ArrayMemoryError saving image

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22523
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/INTERFACE MAP.cxs"

Opened Data_map_1.mrc as #1, grid size 512,512,512, pixel 1.05, shown at level
0.00157, step 2, values float32  
Opened Data_map_1.mrc as #2, grid size 512,512,512, pixel 1.05, shown at level
1.77e-06, step 2, values float32  
Log from Wed Aug 27 18:48:25 2025UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/INTERFACE MAP.cxs"

Opened Data_map_1.mrc as #1, grid size 512,512,512, pixel 1.05, shown at level
0.00157, step 2, values float32  
Opened Data_map_1.mrc as #2, grid size 512,512,512, pixel 1.05, shown at level
1.77e-06, step 2, values float32  
Log from Wed Aug 27 18:08:40 2025UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui tool show Registration

Thank you for registering your copy of ChimeraX. By providing the information
requested you will be helping us document the impact this software is having
in the scientific community. The information you supplied will only be used
for reporting summary usage statistics; no individual data will be released.  
reshma.ramesh@mpinat.mpg.de has been invited to the ChimeraX announcements
list  

> open "G:\Folder_F\ERK2htau23\Cryo-em Data
> ERK2phtau23\Tau_ZweckstetterAG\Tau_ZweckstetterAG\final_data_for_Zweckstetter_AG\compare_density_map\Data_map_1.mrc"
> format mrc

Opened Data_map_1.mrc as #1, grid size 512,512,512, pixel 1.05, shown at level
1.77e-06, step 2, values float32  

> open "G:\Folder_F\ERK2htau23\Cryo-em Data
> ERK2phtau23\Tau_ZweckstetterAG\Tau_ZweckstetterAG\final_data_for_Zweckstetter_AG\compare_density_map\Data_map_1.mrc"
> format mrc

Opened Data_map_1.mrc as #2, grid size 512,512,512, pixel 1.05, shown at level
1.77e-06, step 2, values float32  

> open "G:/Folder_F/ERK2htau23/Cryo-em Data
> ERK2phtau23/Tau_ZweckstetterAG/Tau_ZweckstetterAG/final_data_for_Zweckstetter_AG/Data2/9cgx_v42_l3_renamed.pdb"

Chain information for 9cgx_v42_l3_renamed.pdb #3  
---  
Chain | Description  
A B C D E F | No description available  
  

> hide #!2 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> style stick

Changed 6960 atom styles  

> color #3 #00007fff

> open G:/6hre_E_F.pdb

Chain information for 6hre_E_F.pdb #4  
---  
Chain | Description  
E F | No description available  
  
Computing secondary structure  

> open G:/9CGX_C_D.pdb

Summary of feedback from opening G:/9CGX_C_D.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 1 1 ILE A 308 TYR A 310 0  
Start residue of secondary structure not found: SHEET 2 2 1 VAL A 313 ASP A
314 0  
Start residue of secondary structure not found: SHEET 3 3 1 LYS A 317 CYS A
322 0  
Start residue of secondary structure not found: SHEET 4 4 1 ILE A 328 HIS A
330 0  
Start residue of secondary structure not found: SHEET 5 5 1 GLN A 336 LYS A
340 0  
34 messages similar to the above omitted  
  
Chain information for 9CGX_C_D.pdb #5  
---  
Chain | Description  
C D | No description available  
  

> open G:/data2_B_C.pdb

Summary of feedback from opening G:/data2_B_C.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 1 1 ILE A 308 TYR A 310 0  
Start residue of secondary structure not found: SHEET 2 2 1 VAL A 313 ASP A
314 0  
Start residue of secondary structure not found: SHEET 3 3 1 LYS A 317 CYS A
322 0  
Start residue of secondary structure not found: SHEET 4 4 1 ILE A 328 HIS A
330 0  
Start residue of secondary structure not found: SHEET 5 5 1 GLN A 336 LYS A
340 0  
33 messages similar to the above omitted  
  
Chain information for data2_B_C.pdb #6  
---  
Chain | Description  
B C | No description available  
  

> hide #3 models

> view

> style #4-6 stick

Changed 5814 atom styles  

> hide #4-6 cartoons

> style #4-6 stick

Changed 5814 atom styles  

> style #4-6 ball

Changed 5814 atom styles  

> show #4-6 target ab

> color #4 yellow

> color #5 #55aa00ff

> color #6 blue

> select #6/C:348@CG

1 atom, 1 residue, 1 model selected  

> select add #6/C:349@NH2

2 atoms, 2 residues, 1 model selected  

> ui tool show Distances

> distance #6/C:348@CG #6/C:349@NH2

Distance between data2_B_C.pdb #6/C ASP 348 CG and ARG 349 NH2: 8.143Å  

> select #4/E:348@CG

1 atom, 1 residue, 1 model selected  

> select add #5/D:349@NH1

2 atoms, 2 residues, 2 models selected  

> distance #4/E:348@CG #5/D:349@NH1

Distance between 6hre_E_F.pdb #4/E ASP 348 CG and 9CGX_C_D.pdb #5/D ARG 349
NH1: 3.345Å  

> select #4/E:348@CG

1 atom, 1 residue, 1 model selected  

> select add #4/E:349@CZ

2 atoms, 2 residues, 1 model selected  

> distance #4/E:348@CG #4/E:349@CZ

Distance between 6hre_E_F.pdb #4/E ASP 348 CG and ARG 349 CZ: 6.741Å  

> select #6/C:345@CG

1 atom, 1 residue, 1 model selected  

> select add #6/C:347@CE

2 atoms, 2 residues, 1 model selected  

> select #6/C:347@NZ

1 atom, 1 residue, 1 model selected  

> select #6/C:345@CG

1 atom, 1 residue, 1 model selected  

> select #6/C:345@OD2

1 atom, 1 residue, 1 model selected  
Drag select of 2 atoms, 1 bonds  

> select #6/C:347@NZ

1 atom, 1 residue, 1 model selected  

> select add #6/C:345@OD2

2 atoms, 2 residues, 1 model selected  

> distance #6/C:347@NZ #6/C:345@OD2

Distance between data2_B_C.pdb #6/C LYS 347 NZ and ASP 345 OD2: 3.791Å  

> select #4/E:345@CG

1 atom, 1 residue, 1 model selected  

> select add #4/E:347@NZ

2 atoms, 2 residues, 1 model selected  

> select #4/E:345@OD2

1 atom, 1 residue, 1 model selected  

> select add #4/E:347@NZ

2 atoms, 2 residues, 1 model selected  

> distance #4/E:345@OD2 #4/E:347@NZ

Distance between 6hre_E_F.pdb #4/E ASP 345 OD2 and LYS 347 NZ: 7.544Å  

> select #4/E:348@OD2

1 atom, 1 residue, 1 model selected  

> select add #4/E:347@NZ

2 atoms, 2 residues, 1 model selected  

> distance #4/E:348@OD2 #4/E:347@NZ

Distance between 6hre_E_F.pdb #4/E ASP 348 OD2 and LYS 347 NZ: 7.648Å  

> hide #5 models

> hide #6 models

> hide #!7 models

> show #5 models

> show #6 models

> hide #4 models

> select #6/C:375@NZ

1 atom, 1 residue, 1 model selected  

> select #6/C:380@OE2

1 atom, 1 residue, 1 model selected  

> select add #6/C:375@NZ

2 atoms, 2 residues, 1 model selected  

> distance #6/C:380@OE2 #6/C:375@NZ

Distance between data2_B_C.pdb #6/C GLU 380 OE2 and LYS 375 NZ: 10.282Å  

> distance #6/C:380@OE2 #6/C:375@NZ

Distance already exists; modify distance properties with 'distance style'  

> distance #6/C:380@OE2 #6/C:375@NZ

Distance already exists; modify distance properties with 'distance style'  

> show #!7 models

> select #5/D:375@NZ

1 atom, 1 residue, 1 model selected  

> select add #5/D:380@OE1

2 atoms, 2 residues, 1 model selected  

> distance #5/D:375@NZ #5/D:380@OE1

Distance between 9CGX_C_D.pdb #5/D LYS 375 NZ and GLU 380 OE1: 2.719Å  

> show #4 models

> select clear

> select #4/E:378@CE1

1 atom, 1 residue, 1 model selected  

> select #4/E:306@CG1

1 atom, 1 residue, 1 model selected  

> select add #4/E:378@CE1

2 atoms, 2 residues, 1 model selected  

> distance #4/E:306@CG1 #4/E:378@CE1

Distance between 6hre_E_F.pdb #4/E VAL 306 CG1 and PHE 378 CE1: 4.440Å  

> select #4/E:308@CD1

1 atom, 1 residue, 1 model selected  

> select add #4/E:378@CD1

2 atoms, 2 residues, 1 model selected  

> distance #4/E:308@CD1 #4/E:378@CD1

Distance between 6hre_E_F.pdb #4/E ILE 308 CD1 and PHE 378 CD1: 4.232Å  

> open G:/503l_E_F.pdb

Chain information for 503l_E_F.pdb #8  
---  
Chain | Description  
E F | No description available  
  
Computing secondary structure  

> hide #4 models

> hide #5 models

> hide #6 models

> hide #8 models

> show #8 models

> style #8 stick

Changed 2272 atom styles  

> hide #!7 models

> hide #8 models

> show #8 models

> hide #8 cartoons

> show #8 target ab

> style #8 stick

Changed 2272 atom styles  

> show #!7 models

> hide #!7 models

> show #6 models

> show #!2 models

> hide #!2 models

> hide #8 models

> hide #6 models

> show #!2 models

> view

> volume #1 level 0.002038

> volume #1 level 0.0001584

> hide #!2 models

> volume #1 level 0.004387

> volume #1 level 0.001568

> hide #!1 models

> show #8 models

> show #6 models

> view

> show #5 models

> hide #8 models

> show #4 models

> open 80re

Fetching url http://files.rcsb.org/download/80re.cif failed:  
HTTP Error 404: Not Found  

> open 8ore

Summary of feedback from opening 8ore fetched from pdb  
---  
note | Fetching compressed mmCIF 8ore from http://files.rcsb.org/download/8ore.cif  
  
8ore title:  
Cryo-EM structure of SH-SY5Y seeded with filaments from Alzheimer's Disease
[more info...]  
  
Chain information for 8ore #9  
---  
Chain | Description | UniProt  
A B C | Microtubule-associated protein tau | TAU_HUMAN 30-441  
  

> hide #6 models

> hide #5 models

> hide #4 models

> style #9 stick

Changed 3615 atom styles  

> hide #9 target a

> hide #9 cartoons

> show #9 target ab

> color #9 #ff007fff

> ui tool show Matchmaker

> matchmaker #9 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker data2_B_C.pdb, chain B (#6) with 8ore, chain A (#9), sequence
alignment score = 235.1  
RMSD between 57 pruned atom pairs is 0.907 angstroms; (across all 74 pairs:
2.071)  
  

> matchmaker #9 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker data2_B_C.pdb, chain B (#6) with 8ore, chain A (#9), sequence
alignment score = 235.1  
RMSD between 57 pruned atom pairs is 0.907 angstroms; (across all 74 pairs:
2.071)  
  

> show #6 models

> show #5 models

> hide #9 models

> show #9 models

> hide #6 models

> hide #5 models

> hide #9 models

> show #5 models

> show #6 models

> hide #5 models

> show #4 models

> select #4/E:331@NZ

1 atom, 1 residue, 1 model selected  

> select add #4/F:336@NE2

2 atoms, 2 residues, 1 model selected  

> distance #4/E:331@NZ #4/F:336@NE2

Distance between 6hre_E_F.pdb #4/E LYS 331 NZ and /F GLN 336 NE2: 4.617Å  

> show #8 models

> show #!7 models

> hide #8 models

> select #4/F:338@OE2

1 atom, 1 residue, 1 model selected  

> select add #4/E:331@NZ

2 atoms, 2 residues, 1 model selected  

> distance #4/F:338@OE2 #4/E:331@NZ

Distance between 6hre_E_F.pdb #4/F GLU 338 OE2 and /E LYS 331 NZ: 5.090Å  

> select #6/C:331@NZ

1 atom, 1 residue, 1 model selected  

> select add #6/B:336@HE22

2 atoms, 2 residues, 1 model selected  

> distance #6/C:331@NZ #6/B:336@HE22

Distance between data2_B_C.pdb #6/C LYS 331 NZ and /B GLN 336 HE22: 5.991Å  

> select #6/C:331@NZ

1 atom, 1 residue, 1 model selected  

> select add #6/B:338@OE2

2 atoms, 2 residues, 1 model selected  

> distance #6/C:331@NZ #6/B:338@OE2

Distance between data2_B_C.pdb #6/C LYS 331 NZ and /B GLU 338 OE2: 6.752Å  

> show #9 models

> hide #!7 models

> hide #6 models

> style #4,9 ball

Changed 4789 atom styles  

> show #5 models

> hide #5 models

> show #6 models

> show #5 models

> hide #6 models

> hide #5 models

> hide #4 models

> show #5 models

> hide #5 models

> open 5o3t

Summary of feedback from opening 5o3t fetched from pdb  
---  
note | Fetching compressed mmCIF 5o3t from http://files.rcsb.org/download/5o3t.cif  
  
5o3t title:  
Straight filament in Alzheimer's disease brain [more info...]  
  
Chain information for 5o3t #10  
---  
Chain | Description | UniProt  
A B C D E F G H I J | Microtubule-associated protein tau | TAU_HUMAN 306-378  
  

> hide #9 models

> hide #10 cartoons

> show #10 cartoons

> style #10 stick

Changed 11360 atom styles  

> show #5 models

> hide #5 models

> ui tool show Matchmaker

QWindowsWindow::setGeometry: Unable to set geometry 640x591+880+494 (frame:
658x638+871+456) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 638x583+881+501 (frame: 656x630+872+463)
margins: 9, 38, 9, 9 minimum size: 486x330 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=655377, y=655406), mintrack=POINT(x=626, y=460)))  

> matchmaker #10 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker data2_B_C.pdb, chain B (#6) with 5o3t, chain A (#10), sequence
alignment score = 339.7  
RMSD between 63 pruned atom pairs is 0.844 angstroms; (across all 72 pairs:
1.178)  
  

> matchmaker #10 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker data2_B_C.pdb, chain B (#6) with 5o3t, chain A (#10), sequence
alignment score = 339.7  
RMSD between 63 pruned atom pairs is 0.844 angstroms; (across all 72 pairs:
1.178)  
  

> show #9 models

> cartoon hide #9-10

> show #4 models

> show #6 models

> hide #9 models

> hide #4 models

> show #9 models

> select #9/A

1205 atoms, 1214 bonds, 77 residues, 1 model selected  

> save G:\8ORE_A.pdb selectedOnly true

Computing secondary structure  

> select #10/A,B

2272 atoms, 2290 bonds, 146 residues, 1 model selected  

> save G:\5O3T_A_B.pdb selectedOnly true

> hide #10 models

> hide #9 models

> show #5 models

> hide #5 models

> show #5 models

> show #4 models

> open G:/8ORE_A.pdb

Chain information for 8ORE_A.pdb #11  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open G:/5O3T_A_B.pdb

Summary of feedback from opening G:/5O3T_A_B.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 13 13 1 ILE C 328 HIS C 330 0  
Start residue of secondary structure not found: SHEET 14 14 1 GLN C 336 LYS C
340 0  
Start residue of secondary structure not found: SHEET 15 15 1 LYS C 343 PHE C
346 0  
Start residue of secondary structure not found: SHEET 16 16 1 GLN C 351 LYS C
353 0  
Start residue of secondary structure not found: SHEET 17 17 1 GLY C 355 HIS C
362 0  
19 messages similar to the above omitted  
  
Chain information for 5O3T_A_B.pdb #12  
---  
Chain | Description  
A B | No description available  
  

> hide #11 models

> hide #12 models

> align #11/A:307-380@N,CA,C,O toAtoms #7/B:307-380@N,CA,C,O

Unequal number of atoms to pair, 296 and 0  

> ui tool show "Show Sequence Viewer"

QWindowsWindow::setGeometry: Unable to set geometry 343x336+1029+621 (frame:
361x383+1020+583) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 341x328+1030+628 (frame:
359x375+1021+590) margins: 9, 38, 9, 9 minimum size: 184x147 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=655377, y=655406), mintrack=POINT(x=248, y=231)))  

> sequence chain #11/A

Alignment identifier is 11/A  

> align #11/A:307-380@N,CA,C,O toAtoms #6/B:307-380@N,CA,C,O

RMSD between 296 atom pairs is 1.924 angstroms  

> show #9 models

> hide #9 models

> show #11 models

> hide #6 models

> hide #5 models

> hide #4 models

> hide #11 cartoons

> style #11 stick

Changed 1205 atom styles  

> show #11 target ab

> show #4 models

> show #5 models

> show #6 models

> show #8 models

> hide #8 models

> show #!7 models

> show #8 models

> hide #8 models

> show #8 models

> hide #8 models

> show #8 models

> hide #8 models

> show #8 models

> color #8 #00557fff

> style #4-6,8,11 ball

Changed 9291 atom styles  

> select #6/C:340@NZ

1 atom, 1 residue, 1 model selected  

> select add #6/C:342@OE2

2 atoms, 2 residues, 1 model selected  

> distance #6/C:340@NZ #6/C:342@OE2

Distance between data2_B_C.pdb #6/C LYS 340 NZ and GLU 342 OE2: 5.148Å  

> select #4/E:340@NZ

1 atom, 1 residue, 1 model selected  

> select add #4/E:342@OE2

2 atoms, 2 residues, 1 model selected  

> distance #4/E:340@NZ #4/E:342@OE2

Distance between 6hre_E_F.pdb #4/E LYS 340 NZ and GLU 342 OE2: 10.822Å  

> select #6/C:340@HZ1

1 atom, 1 residue, 1 model selected  

> select add #6/C:342@OE2

2 atoms, 2 residues, 1 model selected  

> distance #6/C:340@HZ1 #6/C:342@OE2

Distance between data2_B_C.pdb #6/C LYS 340 HZ1 and GLU 342 OE2: 4.871Å  

> color sel byhetero

> ui tool show "Show Sequence Viewer"

QWindowsWindow::setGeometry: Unable to set geometry 343x336+1029+621 (frame:
361x383+1020+583) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 341x328+1030+628 (frame:
359x375+1021+590) margins: 9, 38, 9, 9 minimum size: 184x147 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=655377, y=655406), mintrack=POINT(x=248, y=231)))  

> sequence chain #12/A

Alignment identifier is 12/A  

> align #12/A:307-378@N,CA,C,O /B:307-378@N,CA,C,O toAtoms
> #6/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O

Unequal number of atoms to pair, 576 and 592  

> align #12/A:307-378@N,CA,C,O /B:307-378@N,CA,C,O toAtoms
> #6/B:307-378@N,CA,C,O /C:307-378@N,CA,C,O

RMSD between 576 atom pairs is 34.711 angstroms  

> show #12 models

> align #12/B:307-378@N,CA,C,O /A:307-378@N,CA,C,O toAtoms
> #6/B:307-378@N,CA,C,O /C:307-378@N,CA,C,O

RMSD between 576 atom pairs is 34.629 angstroms  

> hide sel cartoons

> style sel stick

Changed 2 atom styles  

> style sel ball

Changed 2 atom styles  

> cartoon hide sel

> hide #* target a

> show sel target ab

> undo

> show sel target ab

> hide #11 models

> show #11 models

> hide #11 models

> show #11 models

> undo

[Repeated 5 time(s)]

> hide #12 models

> hide #8 models

> hide #!7 models

> hide #6 models

> hide #5 models

> hide #4 models

> align #12/B:307-378@N,CA,C,O toAtoms #6/B:307-378@N,CA,C,O

RMSD between 288 atom pairs is 1.319 angstroms  

> show #6 models

> show #12 models

> hide #11 models

> hide #6 models

> show #12 atoms

> style #12 ball

Changed 2272 atom styles  

> hide #12 cartoons

> show #11 models

> show #6 models

> hide #11 models

> hide #6 models

> show #5 models

> hide #5 models

> show #4 models

> show #5 models

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> show #6 models

> color #12 #ff5500ff

> align #12/A:307-378@N,CA,C,O toAtoms #6/C:307-378@N,CA,C,O

RMSD between 288 atom pairs is 1.319 angstroms  

> align #12/A:307-378@N,CA,C,O toAtoms #4/F:307-378@N,CA,C,O

RMSD between 288 atom pairs is 1.299 angstroms  

> hide #12 models

> hide #5 models

> align #7/B:336-358@N,CA,C,O /C:336-358@N,CA,C,O toAtoms
> #4/E:336-358@N,CA,C,O /F:336-358@N,CA,C,O

Unequal number of atoms to pair, 0 and 184  

> align #7/B:336-358@N,CA,C,O /C:336-358@N,CA,C,O toAtoms
> #4/E:336-358@N,CA,C,O /F:336-358@N,CA,C,O

Unequal number of atoms to pair, 0 and 184  

> ui tool show "Show Sequence Viewer"

QWindowsWindow::setGeometry: Unable to set geometry 343x336+1029+621 (frame:
361x383+1020+583) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 341x328+1030+628 (frame:
359x375+1021+590) margins: 9, 38, 9, 9 minimum size: 184x147 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=655377, y=655406), mintrack=POINT(x=248, y=231)))  

> sequence chain #4/F

Alignment identifier is 4/F  

> align #7/B:336-358@N,CA,C,O /C:336-358@N,CA,C,O toAtoms
> #4/E:336-358@N,CA,C,O /F:336-358@N,CA,C,O

Unequal number of atoms to pair, 0 and 184  

> align #4/E:336-358@N,CA,C,O /F:336-358@N,CA,C,O toAtoms
> #6/B:336-358@N,CA,C,O /C:336-358@N,CA,C,O

RMSD between 184 atom pairs is 1.262 angstroms  

> align #4/E:307-380@N,CA,C,O /F:307-380@N,CA,C,O toAtoms
> #6/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O

RMSD between 592 atom pairs is 2.426 angstroms  

> align #6/E:307-380@N,CA,C,O /F:307-380@N,CA,C,O toAtoms
> #4/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O

No atoms paired for alignment  

> align #6/E:307-380@N,CA,C,O /F:307-380@N,CA,C,O toAtoms
> #4/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O

No atoms paired for alignment  

> align #6/E:307-380@N,CA,C,O /F:307-380@N,CA,C,O toAtoms
> #4/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O

No atoms paired for alignment  

> align #6/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O toAtoms
> #4/E:307-380@N,CA,C,O /F:307-380@N,CA,C,O

RMSD between 592 atom pairs is 2.426 angstroms  

> align #6/B:307-378@N,CA,C,O /C:307-378@N,CA,C,O toAtoms
> #4/E:307-378@N,CA,C,O /F:307-378@N,CA,C,O

RMSD between 576 atom pairs is 1.740 angstroms  

> show #11 models

> hide #11 models

> show #11 models

> hide #11 models

> show #11 models

> align #4/E:307-378@N,CA,C,O /F:307-378@N,CA,C,O toAtoms
> #6/B:307-378@N,CA,C,O /C:307-378@N,CA,C,O

RMSD between 576 atom pairs is 1.740 angstroms  

> align #4/E:307-380@N,CA,C,O /F:307-380@N,CA,C,O toAtoms
> #6/B:307-380@N,CA,C,O /C:307-380@N,CA,C,O

RMSD between 592 atom pairs is 2.426 angstroms  

> hide #11 models

> hide #4 models

> hide #6 models

> open G:/6hre_E_F.pdb

Summary of feedback from opening G:/6hre_E_F.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 1 1 ILE A 308 TYR A 310 0  
Start residue of secondary structure not found: SHEET 2 2 1 VAL A 313 ASP A
314 0  
Start residue of secondary structure not found: SHEET 3 3 1 LYS A 317 CYS A
322 0  
Start residue of secondary structure not found: SHEET 4 4 1 ILE A 328 HIS A
330 0  
Start residue of secondary structure not found: SHEET 5 5 1 GLN A 336 LYS A
340 0  
34 messages similar to the above omitted  
  
Chain information for 6hre_E_F.pdb #13  
---  
Chain | Description  
E F | No description available  
  

> open G:/data2_B_C.pdb

Summary of feedback from opening G:/data2_B_C.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 1 1 ILE A 308 TYR A 310 0  
Start residue of secondary structure not found: SHEET 2 2 1 VAL A 313 ASP A
314 0  
Start residue of secondary structure not found: SHEET 3 3 1 LYS A 317 CYS A
322 0  
Start residue of secondary structure not found: SHEET 4 4 1 ILE A 328 HIS A
330 0  
Start residue of secondary structure not found: SHEET 5 5 1 GLN A 336 LYS A
340 0  
33 messages similar to the above omitted  
  
Chain information for data2_B_C.pdb #14  
---  
Chain | Description  
B C | No description available  
  

> style #13-14 stick

Changed 3494 atom styles  

> style #13-14 ball

Changed 3494 atom styles  

> show #13-14 atoms

> style #13-14 ball

Changed 3494 atom styles  

> hide atoms

> cartoon hide #13-14

> hide atoms

> show @C,N,CA

> show #14/B:331-338@N,CA,C,O,CB /C:331-338@N,CA,C,O,CB

> style #13-14 ball

Changed 3494 atom styles  

> style #13-14 ball

Changed 3494 atom styles  

> style #13-14 ball

Changed 3494 atom styles  

> style #13-14 ball

Changed 3494 atom styles  

> style #13-14 stick

Changed 3494 atom styles  

> style #13-14 sphere

Changed 3494 atom styles  

> style #13-14 ball

Changed 3494 atom styles  

> show (#13-14 & sidechain) target ab

> style #13-14 stick

Changed 3494 atom styles  

> open G:/9CGX_C_D.pdb

Summary of feedback from opening G:/9CGX_C_D.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 1 1 ILE A 308 TYR A 310 0  
Start residue of secondary structure not found: SHEET 2 2 1 VAL A 313 ASP A
314 0  
Start residue of secondary structure not found: SHEET 3 3 1 LYS A 317 CYS A
322 0  
Start residue of secondary structure not found: SHEET 4 4 1 ILE A 328 HIS A
330 0  
Start residue of secondary structure not found: SHEET 5 5 1 GLN A 336 LYS A
340 0  
34 messages similar to the above omitted  
  
Chain information for 9CGX_C_D.pdb #15  
---  
Chain | Description  
C D | No description available  
  

> open G:/503l_E_F.pdb

Chain information for 503l_E_F.pdb #16  
---  
Chain | Description  
E F | No description available  
  
Computing secondary structure  

> hide #13 models

> hide #14 models

> show #15-16 atoms

> hide atoms

> cartoon hide #15-16

> show @C,N,CA

> style #15-16 stick

Changed 4592 atom styles  

> select up

37 atoms, 35 bonds, 2 residues, 1 model selected  

> select up

112 atoms, 111 bonds, 7 residues, 1 model selected  

> select up

1160 atoms, 1169 bonds, 74 residues, 1 model selected  

> select down

112 atoms, 111 bonds, 7 residues, 1 model selected  

> select down

37 atoms, 35 bonds, 2 residues, 1 model selected  

> select down

2 atoms, 2 residues, 1 model selected  

> select down

2 atoms, 2 residues, 1 model selected  

> select down

2 atoms, 2 residues, 1 model selected  

> select down

2 atoms, 2 residues, 1 model selected  

> select up

37 atoms, 35 bonds, 2 residues, 1 model selected  

> select up

112 atoms, 111 bonds, 7 residues, 1 model selected  

> select up

1160 atoms, 1169 bonds, 74 residues, 1 model selected  

> select up

2320 atoms, 2338 bonds, 148 residues, 1 model selected  

> show (#15-16 & sidechain) target ab

> show #14/B:331-338@N,CA,C,O,CB /C:331-338@N,CA,C,O,CB

> show #15/C:331-338@N,CA,C,O,CB /D:331-338@N,CA,C,O,CB

> hide #15/C:338-370@N,CA,C,O,CB /D:331-338@N,CA,C,O,CB

> hide #15/C:338-370@sidechain /D:331-338@N,CA,C,O,CB

> hide #15/C:338-370@sidechain /D:331-338@sidechain

> hide #16 models

> hide #15/C:338-370@sidechain /D:338-370@N,CA,C,O,CB

> hide #15/C:338-370@sidechain /D:338-370@sidechains

> hide #15/C:338-370@sidechain /D:338-370@O,CB

> hide #15/C:338-370@sidechain /D:338-370@sidechains

> hide #15/C:338-370@sidechain /D:338-370@sidechain

> hide #15/C:33-370@sidechain /D:33-370@sidechain

> hide #15/C:33-370@sidechain /D:339-370@O,CB,CG,CD

> hide #15/C:33-370@sidechain /D:339-370@O,CB,CG,CD,NZ,CE,H

[Repeated 1 time(s)]

> hide #15/C:33-370@sidechain /D:339-370@O,CB,CG,CD,NZ,CE,H,CZ

> show #15/C:33-370@sidechain /D:339-370@Ca,N,C

Drag select of 370 atoms, 347 bonds  
Drag select of 574 atoms, 509 bonds  
Drag select of 201 atoms, 116 bonds  
Drag select of 341 atoms, 334 bonds  

> hide sel atoms

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> hide sel & sideonly

> hide atoms

> show @C,N,CA

Drag select of 3 atoms, 3 bonds  
Drag select of 32 atoms, 31 bonds  
Drag select of 15 atoms, 16 bonds  
Drag select of 3 atoms, 3 bonds  
Drag select of 3 atoms, 4 bonds  
Drag select of 19 atoms, 19 bonds  

> show sideonly

> undo

> show sel & sideonly

> show (sel-residues & sidechain) target ab

Drag select of 17 atoms, 18 bonds  
Drag select of 4 atoms, 5 bonds  

> show (sel-residues & sidechain) target ab

> show #16 models

> hide #15 models

> show #15 models

> hide #15 models

Drag select of 15 atoms, 15 bonds  
Drag select of 7 atoms, 8 bonds  

> show (sel-residues & sidechain) target ab

Drag select of 13 atoms, 13 bonds  
Drag select of 6 atoms, 6 bonds  
Drag select of 2 atoms, 2 bonds  
Drag select of 7 atoms, 6 bonds  

> show (sel-residues & sidechain) target ab

Drag select of 6 atoms, 8 bonds  

> show (sel-residues & sidechain) target ab

> show #15 models

> show #14 models

Drag select of 279 atoms, 287 bonds  

> show (sel-residues & sidechain) target ab

> hide #16 models

> hide #15 models

> show #13 models

> show #15 models

> hide #13 models

Drag select of 12 atoms, 12 bonds  

> show #13 models

> hide #13 models

> show #16 models

Drag select of 19 atoms, 20 bonds  

> hide sel atoms

> undo

> hide sel & sideonly

> hide sel & HA

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show (sel-residues & sidechain) target ab

Drag select of 32 atoms, 35 bonds  
Drag select of 37 atoms, 42 bonds  
Drag select of 28 atoms, 33 bonds  
Drag select of 27 atoms, 31 bonds  
Drag select of 16 atoms, 17 bonds  

> hide sel atoms

> undo

> hide sel & sideonly

> hide sel @HA

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide sel atoms @HA

Expected ',' or a keyword  

> hide sel atoms@HA

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide sel & atoms@HA

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> hide sel target a

> select #16/F:330@HA

1 atom, 1 residue, 1 model selected  

> select add #14/C:330@HA

2 atoms, 2 residues, 2 models selected  
Drag select of 1 bonds  
Drag select of 1 atoms, 1 bonds  

> select #14/C:331@H

1 atom, 1 residue, 1 model selected  

> select #16/F:330@HA

1 atom, 1 residue, 1 model selected  

> select #15/D:330@HA

1 atom, 1 residue, 1 model selected  

> select #14/C:330@HA

1 atom, 1 residue, 1 model selected  

> select add #16/F:330@HA

2 atoms, 2 residues, 2 models selected  

> select add #15/D:330@HA

3 atoms, 3 residues, 3 models selected  

> select subtract #15/D:330@HA

2 atoms, 2 residues, 2 models selected  

> select add #15/D:330@HA

3 atoms, 3 residues, 3 models selected  

> select add #14/C:331@H

4 atoms, 1 bond, 4 residues, 3 models selected  

> hide sel target a

> select #16/F:330@H

1 atom, 1 residue, 1 model selected  

> select add #15/D:330@H

2 atoms, 1 bond, 2 residues, 2 models selected  

> select add #14/C:330@H

3 atoms, 2 bonds, 3 residues, 3 models selected  

> select add #15/D:330@O

4 atoms, 3 bonds, 3 residues, 3 models selected  

> select add #14/C:330@O

5 atoms, 3 bonds, 3 residues, 3 models selected  

> select add #16/F:330@O

6 atoms, 3 bonds, 3 residues, 3 models selected  

> hide sel target a

> hide #16 models

Drag select of 24 atoms, 25 bonds  

> show (sel-residues & sidechain) target ab

Drag select of 9 atoms, 11 bonds  

> show (sel-residues & sidechain) target ab

> hide #15 models

> hide #14 models

> show #16 models

> show #13 models

Drag select of 84 atoms, 85 bonds  

> show (sel-residues & sidechain) target ab

> select clear

Drag select of 51 atoms, 57 bonds  
Drag select of 15 atoms, 14 bonds  

> show (sel-residues & sidechain) target ab

> show #12 models

> hide #12 models

> show #12 models

> hide #13 models

> hide #16 models

> hide atoms

> show @C,N,CA

> style #12 stick

Changed 2272 atom styles  

> show #13 models

> hide #13 models

> show #14 models

> show #15 models

> show #16 models

> hide #12 models

> show #13 models

> hide #13 models

> show #12 models

> show #13 models

Drag select of 87 atoms, 88 bonds  
Drag select of 15 atoms, 15 bonds  
Drag select of 22 atoms, 19 bonds  
Drag select of 13 atoms, 13 bonds  
Drag select of 21 atoms, 20 bonds  
Drag select of 32 atoms, 33 bonds  
Drag select of 35 atoms, 34 bonds  
Drag select of 92 atoms, 93 bonds  
Drag select of 105 atoms, 102 bonds  
Drag select of 40 atoms, 38 bonds  

> select clear

Drag select of 89 atoms, 88 bonds  
Drag select of 32 atoms, 33 bonds  

> show (sel-residues & sidechain) target ab

Drag select of 105 atoms, 100 bonds  
Drag select of 10 atoms, 11 bonds  
Drag select of 96 atoms, 93 bonds  

> show (sel-residues & sidechain) target ab

> select #14/C:358@CA

1 atom, 1 residue, 1 model selected  

> hide #12 models

> show #12 models

> hide #12 models

> color #13 yellow

> color #13 #ffd817ff

> color #13 #ff8d2fff

> color #13 #ffbe25ff

> color #13 #ffc71eff

> color #13 #ffc71dff

> color #14 #6e52feff

> color #14 #6c50f9ff

> color #14 blue

> color #15 #00aa00ff

> color #15 #007500ff

> color #15 #008300ff

> color #15 #007a00ff

> color #15 #008800ff

> color #15 #008a00ff

> color #15 #009900ff

> color #15 #00991fff

> color #15 #009930ff

> color #15 #009f32ff

> color #15 #009e32ff

> color #16 #005518ff

> color #16 #00aa00ff

> color #16 #28aa1fff

> color #16 #23931bff

> color #15 #ff55ffff

> color #15 #bc3fbcff

> color #15 #d948d9ff

> color #15 #ffaaffff

[Repeated 1 time(s)]

> color #15 #ff55ffff

> color #15 magenta

> color #15 #ff55ffff

> color #15 #ff2edcff

> hide #14 models

> hide #15 models

Drag select of 23 atoms, 23 bonds  

> show (#13,16 & sel-residues & sidechain) target ab

> show #15 models

> hide #15 models

> show #15 models

> hide #15 models

> hide #16 models

> show sel & #13 atoms

> style sel & #13 stick

Changed 10 atom styles  

> show (#13 & sel-residues & sidechain) target ab

> show #14 models

> hide #14 models

> show (#13 & sel) target ab

> show @C,N,CA,H

> show #14 models

> hide #14 models

> show #14 models

> hide #14 models

> undo

> hide #14 models

> show #14 models

> undo

[Repeated 6 time(s)]

> show #14 models

> hide #14 models

> style sel & #13 stick

Changed 10 atom styles  

> style sel & #13 stick

Changed 10 atom styles  

> style sel & #13 stick

Changed 10 atom styles  

> style sel & #13 sphere

Changed 10 atom styles  

> style sel & #13 sphere

Changed 10 atom styles  

> style sel & #13 ball

Changed 10 atom styles  

> style sel & #13 stick

Changed 10 atom styles  

> show #14 models

> show #15 models

> show #16 models

> color sel byhetero

> hide #14 models

> show #14 models

> hide #15 models

> hide #16 models

> show #16 models

> hide #14 models

> hide #13 models

> show #13 models

> show #14 models

> hide #14 models

> show #14 models

> show #15 models

> hide #13 models

> hide #14 models

> hide #15 models

> hide #16 models

> show #16 models

> save "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/INTERFACE MAP.cxs"

——— End of log from Wed Aug 27 18:08:40 2025 ———

> view name session-start

opened ChimeraX session  

> ~select

Nothing selected  

> show #15 models

> show #14 models

> show #13 models

> show #12 models

> show #11 models

> hide #12 models

> hide #11 models

> color #13-16 byhetero

> hide #13 models

> hide #14 models

> hide #15 models

> hide #16 models

> show #4 models

> style #4 stick

Changed 1174 atom styles  

> show #4 atoms

> show #14 models

> hide #14 models

> show #14 models

> hide #14 models

> hide atoms

> show @C,N,CA,H

> show @C,N,CA

> show #14 models

> undo

[Repeated 3 time(s)]

> show #13 models

> hide #4 models

> show #4 models

> hide #13 models

> select add #4

1174 atoms, 1192 bonds, 8 pseudobonds, 154 residues, 2 models selected  

> hide (#4 & sel-residues & (protein|nucleic)) target a

> cartoon hide (#4 & sel-residues)

> show (#4 & sel-residues & backbone) target ab

> show @C,N,CA

> hide atoms

> show @C,N,CA

> show #14 models

> hide #14 models

> undo

[Repeated 6 time(s)]

> show #13 models

Drag select of 12 atoms, 12 bonds  
Drag select of 11 atoms, 11 bonds  

> ~select

Nothing selected  
Drag select of 10 atoms, 10 bonds  

> show @C,N,CA,O

> show sel @C,N,CA,O

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show sel & @C,N,CA,O

> show sel & atoms@C,N,CA,O

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show sel & atoms @C,N,CA,O

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show #14 models

> hide #13 models

> hide #14 models

> hide #4 models

> show #4 models

> ~select

Nothing selected  

> show #12 models

> hide #12 models

> show #6 models

> hide #6 models

> hide #4 models

> show #4 models

> view

> show @C,N,CA,O

> show #12 models

> hide #12 models

> show #12 models

> hide #12 models

> hide atoms

> show @C,N,CA,

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show @C,N,CA

> show #12 models

> hide #12 models

> undo

[Repeated 9 time(s)]

> show #13 models

Drag select of 5 atoms, 4 bonds  
Drag select of 9 atoms, 10 bonds  

> show sel target ab

> show (sel-residues & sidechain) target ab

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & ((protein&@ca)|(nucleic&@p))) target ab

> undo

[Repeated 6 time(s)]Drag select of 8 atoms, 10 bonds  

> nucleotides sel fill

> select up

11 atoms, 10 bonds, 5 residues, 1 model selected  

> select up

28 atoms, 28 bonds, 5 residues, 1 model selected  

> select down

11 atoms, 10 bonds, 5 residues, 1 model selected  

> select up

28 atoms, 28 bonds, 5 residues, 1 model selected  

> select up

69 atoms, 69 bonds, 10 residues, 1 model selected  

> select up

587 atoms, 596 bonds, 77 residues, 1 model selected  

> hide atoms

> show @C,N,CA,O

> show #14 models

> show #15 models

> show #16 models

> hide #4 models

> hide @O:360-365

> undo

> ~select

Nothing selected  

> hide @O:360-365

> hide #4 models

> show @O:360-365

> undo

> hide atoms :360-365@O

Expected ',' or a keyword  

> hide :360-365@O

> hide :339-378@O

> hide :339-380@O

> hide :306-330@O

Drag select of 197 atoms, 194 bonds  
Drag select of 15 atoms, 15 bonds  
Drag select of 26 atoms, 24 bonds  

> show (sel-residues & sidechain) target ab

> select #13/F:339@CA

1 atom, 1 residue, 1 model selected  

> hide sel target a

> undo

> select #13/F:339@CG2

1 atom, 1 residue, 1 model selected  

> select add #13/F:339@CG2

1 atom, 1 bond, 1 residue, 1 model selected  

> select add #13/F:339@CG1

2 atoms, 2 bonds, 1 residue, 1 model selected  

> hide sel target ab

> select #13/F:339@CB

1 atom, 1 residue, 1 model selected  

> hide sel target a

> hide #15 models

> show #15 models

> label sel atoms attribute name

> set bgColor white

> lighting simple

> lighting soft

> lighting full

> lighting soft

> lighting simple

> label sel attribute label_one_letter_code

> undo

[Repeated 2 time(s)]

> hide #15 models

> hide sel target a

> ~label sel residues

Drag select of 290 atoms, 301 bonds  
Drag select of 101 atoms, 101 bonds  
Drag select of 275 atoms, 286 bonds  
Drag select of 31 atoms, 31 bonds  

> label sel text "{0.name} {0.number}{0.insertion_code}"

> ~label sel residues

> hide #14 models

> hide #16 models

> hide #!13 models

> show #!13 models

> show #15 models

> show #16 models

> show #14 models

> hide #15 models

> hide #16 models

> hide #!13 models

> label (#14 & sel) text "{0.name} {0.number}{0.insertion_code}"

> ~label (#!14 & sel) residues

> show #15 models

> show #16 models

> hide #15 models

> show #!13 models

> ~select

Nothing selected  

> save "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/INTERFACE MAP.jpg"
> width 9600 height 6617 supersample 3

Traceback (most recent call last):  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\image_formats\\__init__.py", line 56, in save  
save_image(session, path, format_name, **kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\image_formats\save.py", line 134, in save_image  
i = view.image(width, height, supersample=supersample,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 452, in image  
rgba = self.image_rgba(width=width, height=height, supersample=supersample,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 506, in image_rgba  
srgba = zeros((h, w, 4), float32)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 969. MiB for an
array with shape (6617, 9600, 4) and data type float32  
  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 969. MiB for an
array with shape (6617, 9600, 4) and data type float32  
  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 506, in image_rgba  
srgba = zeros((h, w, 4), float32)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> save "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/INTERFACE MAP.cxs"

——— End of log from Wed Aug 27 18:48:25 2025 ———

> view name session-start

opened ChimeraX session  

> save "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/INTERFACE MAP.jpg"
> width 9600 height 6617 supersample 3

Traceback (most recent call last):  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\image_formats\\__init__.py", line 56, in save  
save_image(session, path, format_name, **kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\image_formats\save.py", line 134, in save_image  
i = view.image(width, height, supersample=supersample,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 452, in image  
rgba = self.image_rgba(width=width, height=height, supersample=supersample,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 506, in image_rgba  
srgba = zeros((h, w, 4), float32)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 969. MiB for an
array with shape (6617, 9600, 4) and data type float32  
  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 969. MiB for an
array with shape (6617, 9600, 4) and data type float32  
  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 506, in image_rgba  
srgba = zeros((h, w, 4), float32)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> save "G:/Folder_F/ERK2htau23/Cryo-em Data ERK2phtau23/interfacemap.tif"
> width 9600 height 6617 supersample 3

Traceback (most recent call last):  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\image_formats\\__init__.py", line 56, in save  
save_image(session, path, format_name, **kw)  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\image_formats\save.py", line 134, in save_image  
i = view.image(width, height, supersample=supersample,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 452, in image  
rgba = self.image_rgba(width=width, height=height, supersample=supersample,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 506, in image_rgba  
srgba = zeros((h, w, 4), float32)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 969. MiB for an
array with shape (6617, 9600, 4) and data type float32  
  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 969. MiB for an
array with shape (6617, 9600, 4) and data type float32  
  
File "D:\Chimera\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\view.py", line 506, in image_rgba  
srgba = zeros((h, w, 4), float32)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

QWindowsWindow::setGeometry: Unable to set geometry 750x609+825+485 (frame:
768x656+816+447) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 748x601+826+492 (frame: 766x648+817+454)
margins: 9, 38, 9, 9 minimum size: 600x333 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=655377, y=655406), mintrack=POINT(x=768, y=463)))  




OpenGL version: 3.3.0 NVIDIA 497.33
OpenGL renderer: NVIDIA GeForce GTX 1650 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_IN.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: HP
Model: HP Pavilion Gaming Laptop 15-ec1xxx
OS: Microsoft Windows 11 Home Insider Preview Single Language (Build 22523)
Memory: 7,907,377,152
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 4600H with Radeon Graphics         
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.5.0
    build: 1.2.2.post1
    certifi: 2025.6.15
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.9.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.4
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    nvidia-cuda-cupti-cu12: 12.9.79
    nvidia-cuda-nvcc-cu12: 12.9.86
    nvidia-cuda-nvrtc-cu12: 12.9.86
    nvidia-cuda-runtime-cu12: 12.9.79
    nvidia-cufft-cu12: 11.4.1.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

[Tom Goddard]

User tried to save a 1 GB image and got an out of memory error, working on a Windows computer with only 8 GB of memory.