![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Last modified 3 months ago
#18636 assigned defect
Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | chimera-programmers | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.7.6-arm64-arm-64bit
ChimeraX Version: 1.11.dev202508050120 (2025-08-05 01:20:22 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001e5d16140 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1058 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1223 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imaging, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 53)
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{
"uptime" : 680000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 29674,
"osVersion" : {
"train" : "macOS 13.7.6",
"build" : "22H625",
"releaseType" : "User"
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"captureTime" : "2025-08-27 11:58:58.9185 +0900",
"incident" : "3FB11701-5948-4EE9-8DBA-C8EB5AC4BADD",
"pid" : 95382,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-08-27 11:07:27.2068 +0900",
"procStartAbsTime" : 16453697254654,
"procExitAbsTime" : 16527947265952,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.11.0","CFBundleVersion":"1.11.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"8AE4D722-03D5-56AC-94FD-4E0A154B1F9F","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "7A9DCD78-69FC-17A0-A468-9D4666918DF9",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 3342,
"sleepWakeUUID" : "6E47CF51-2710-4CCA-80DC-DAC0616B9F18",
"sip" : "enabled",
"vmRegionInfo" : "0x8 is not in any region. Bytes before following region: 105554055790584\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600038000000-600040000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":95382},
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"faultingThread" : 0,
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===== Log before crash start =====
UCSF ChimeraX version: 1.11.dev202508050120 (2025-08-05)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/gyoon9/Documents/Final structures/GTR1_pOHB_6.0_1237.pdb"
Chain information for GTR1_pOHB_6.0_1237.pdb #1
---
Chain | Description
B | No description available
> open "/Users/gyoon9/Documents/Final structures/GTR1_I3M_6.0_1856.pdb"
Chain information for GTR1_I3M_6.0_1856.pdb #2
---
Chain | Description
B | No description available
> open "/Users/gyoon9/Documents/Final structures/GTR1_4MTB_6.0_1855.pdb"
Chain information for GTR1_4MTB_6.0_1855.pdb #3
---
Chain | Description
B | No description available
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker GTR1_I3M_6.0_1856.pdb, chain B (#2) with GTR1_pOHB_6.0_1237.pdb,
chain B (#1), sequence alignment score = 2790.8
RMSD between 537 pruned atom pairs is 0.377 angstroms; (across all 545 pairs:
0.783)
> matchmaker #3 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker GTR1_I3M_6.0_1856.pdb, chain B (#2) with GTR1_4MTB_6.0_1855.pdb,
chain B (#3), sequence alignment score = 2775
RMSD between 538 pruned atom pairs is 0.380 angstroms; (across all 545 pairs:
0.772)
> hide :2-70 cartoons
> hide :2-700 cartoons
> hide :2-700 cartoons,atoms
> hide H
> open /Users/gyoon9/Documents/Phenix/GTR1/pOHB_IF/J1374-coot-1.pdb
Chain information for J1374-coot-1.pdb #4
---
Chain | Description
B | No description available
> close #1
> matchmaker #4 to 2#
Invalid "to" argument: invalid atoms specifier
> matchmaker #4 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker GTR1_I3M_6.0_1856.pdb, chain B (#2) with J1374-coot-1.pdb, chain B
(#4), sequence alignment score = 2777
RMSD between 538 pruned atom pairs is 0.388 angstroms; (across all 545 pairs:
0.777)
> hide H
> hide :2-700 cartoons,atoms
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting soft
> lighting full
> lighting flat
> color #2:1 #89D973
> color #4:1 #28331A
> color #4:701 #28331A
> color #4:701 #5C7346
> color #3:1 #4f79cb
> color byhetero a
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color byhetero
> show :196, 513
> show :79,196, 513
> hide H
> select :2-700
13577 atoms, 13897 bonds, 1652 residues, 3 models selected
> transparency sel 60 a
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency sel 60 atoms
> select subtract
Nothing selected
> select add #2
4567 atoms, 4682 bonds, 548 residues, 1 model selected
> preset "molecular surfaces" "ghostly white"
Using preset: Molecular Surfaces / Ghostly White
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color white targ s trans 80
> hide surfaces
> select subtract #2
1 model selected
> color #2 #98f088ff
> color #2 #98f08878
> undo
> color :2-280 #4f79cb
> color :281-700 #a0dbe8
> color byhetero
> select :79,196,513@n,o,c
27 atoms, 9 bonds, 9 residues, 3 models selected
> select :79,196,513@n,o,c,ca
36 atoms, 27 bonds, 9 residues, 3 models selected
> hide sel
> show :65-97,175-206,499-527 cartoons
> cartoon style modeHelix default arrows true arrowsHelix false arrowScale 1
> width 1.0 thickness 0.3 sides 12 divisions 20
> show :79,196,513@n,o,c,ca
> select :79,196,513@n,o,c,
Expected an objects specifier or a keyword
> select :79,196,513@n,o,c
27 atoms, 9 bonds, 9 residues, 3 models selected
> select add #2
4585 atoms, 4688 bonds, 554 residues, 6 models selected
> select add #3
9142 atoms, 9346 bonds, 1113 residues, 6 models selected
> select add #4
13699 atoms, 14021 bonds, 1656 residues, 6 models selected
> select subtract #4
9133 atoms, 9343 bonds, 1110 residues, 5 models selected
> select subtract #3
4567 atoms, 4682 bonds, 548 residues, 3 models selected
> select subtract #2
1 model selected
> transparency 70 cartoons
> hide :91-97
> hide :92-97 cartoons
> show :359-393 cartoons
> show :530-560
> show :530-560 cartoons
> hide :530-560 atoms
> hide :359-393 cartoons
> show :359-393 cartoons
> ui tool show "Side View"
> save /Users/gyoon9/Desktop/image55.png supersample 3
> open "/Users/gyoon9/Documents/Final structures/GTR1_pOHB_6.0_1374.mrc"
Opened GTR1_pOHB_6.0_1374.mrc as #1, grid size 240,240,240, pixel 0.901, shown
at level 0.0967, step 1, values float32
> open "/Users/gyoon9/Documents/Final structures/GTR1_I3M_6.0_1856.mrc"
Opened GTR1_I3M_6.0_1856.mrc as #5, grid size 320,320,320, pixel 0.705, shown
at level 0.0525, step 2, values float32
> open "/Users/gyoon9/Documents/Final structures/GTR1_4MTB_6.0_1855.mrc"
Opened GTR1_4MTB_6.0_1855.mrc as #6, grid size 240,240,240, pixel 0.901, shown
at level 0.0682, step 1, values float32
> volume #1 level 0.4737
> volume #5 level 0.1444
> volume #6 level 0.2357
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #!1 models
> show #!4 models
> select add #4
4566 atoms, 4678 bonds, 546 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.37076,0.77006,0.51918,5.2657,-0.39599,0.37459,-0.83838,212.75,-0.84008,-0.51642,0.16605,235.88
> view matrix models
> #4,0.96867,0.24833,0.004466,-22.842,-0.24656,0.96363,-0.10307,44.89,-0.029898,0.098736,0.99466,-18.002
> view matrix models
> #4,0.93675,0.24748,0.24748,-47.224,-0.22247,0.96692,-0.12482,44.384,-0.27018,0.061864,0.96082,16.376
> view matrix models
> #4,0.57169,0.52167,0.63327,-82.807,-0.1486,0.82491,-0.54538,100.83,-0.8069,0.21769,0.54912,104.81
> show cartoons
> view matrix models
> #4,0.98542,0.029318,0.16762,-18.171,0.0010469,0.98398,-0.17826,25.325,-0.17016,0.17583,0.9696,-5.6697
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.98542,0.029318,0.16762,-17.692,0.0010469,0.98398,-0.17826,19.417,-0.17016,0.17583,0.9696,2.8606
> fitmap #4 inMap #1
Fit molecule J1374-coot-1.pdb (#4) to map GTR1_pOHB_6.0_1374.mrc (#1) using
4566 atoms
average map value = 0.8043, steps = 120
shifted from previous position = 3.34
rotated from previous position = 14.2 degrees
atoms outside contour = 1404, contour level = 0.47373
Position of J1374-coot-1.pdb (#4) relative to GTR1_pOHB_6.0_1374.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999996 -0.00011119 0.00025660 -0.01075420
0.00011127 0.99999994 -0.00032196 0.01170214
-0.00025656 0.00032199 0.99999992 -0.00669067
Axis 0.75498411 0.60164358 0.26081409
Axis point 0.00000000 18.50272888 41.61955601
Rotation angle (degrees) 0.02443487
Shift along axis -0.00282375
> hide #!4 models
> select subtract #4
1 model selected
> hide #!1 models
> show #!2 models
> show #!5 models
> volume #5 level 0.1683
> hide #!5 models
> hide #!2 models
> show #!3 models
> show #!6 models
> vop flip #6
Opened GTR1_4MTB_6.0_1855.mrc z flip as #7, grid size 240,240,240, pixel
0.901, shown at step 1, values float32
> volume #7 level 0.533
> select add #3
4566 atoms, 4661 bonds, 562 residues, 1 model selected
> view matrix models
> #3,0.99876,-0.020469,0.045408,1.9639,-0.0028561,0.88662,0.46249,-37.945,-0.049726,-0.46205,0.88546,73.496
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.97756,-0.18766,-0.095748,37.22,0.19279,0.9801,0.047369,-27.615,0.084953,-0.064765,0.99428,3.5003
> view matrix models
> #3,0.98183,-0.18145,-0.055541,31.975,0.18438,0.98141,0.05326,-27.438,0.044844,-0.062534,0.99703,7.3706
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.98183,-0.18145,-0.055541,27.74,0.18438,0.98141,0.05326,-24.333,0.044844,-0.062534,0.99703,3.3331
> fitmap #3 inMap #7
Fit molecule GTR1_4MTB_6.0_1855.pdb (#3) to map GTR1_4MTB_6.0_1855.mrc z flip
(#7) using 4566 atoms
average map value = 0.3852, steps = 88
shifted from previous position = 1.32
rotated from previous position = 11.4 degrees
atoms outside contour = 3203, contour level = 0.53304
Position of GTR1_4MTB_6.0_1855.pdb (#3) relative to GTR1_4MTB_6.0_1855.mrc z
flip (#7) coordinates:
Matrix rotation and translation
1.00000000 -0.00002406 0.00002923 -0.00548832
0.00002406 1.00000000 0.00005577 -0.01505446
-0.00002923 -0.00005577 1.00000000 0.02147230
Axis -0.82736894 0.43368499 0.35690051
Axis point 0.00000000 348.69771816 314.09231327
Rotation angle (degrees) 0.00386198
Shift along axis 0.00567545
> select subtract #3
1 model selected
> hide #!3 models
> hide #!7 models
> hide :1-700 atoms,cartoons
> show #!1 models
> show #!4 models
> volume #1 level 2.028
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.11.dev202508050120 (2025-08-05)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.9
Locale: UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.1
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: Z15G004X2KH/A
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 11881.121.1
OS Loader Version: 8422.141.2.700.1
Software:
System Software Overview:
System Version: macOS 13.7.6 (22H625)
Kernel Version: Darwin 22.6.0
Time since boot: 16 days, 35 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
LG ULTRAWIDE:
Resolution: 2560 x 1080 (UW-UXGA - Ultra Wide - Ultra Extended Graphics Array)
UI Looks like: 2560 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
babel: 2.17.0
beautifulsoup4: 4.13.4
blockdiag: 3.0.0
blosc2: 3.6.1
build: 1.2.2.post1
certifi: 2025.7.14
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.0
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.10
ChimeraX-AtomicLibrary: 14.1.21
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11.dev202508050120
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchAlign: 1.0
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.15
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.4
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.4
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.2
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.47
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.10.2
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.2
debugpy: 1.8.15
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.59.0
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 5.0.0
lxml: 5.3.1
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.2
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.1
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.1
PyQt6_sip: 13.10.2
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.1
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.4
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.5
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.1
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
Change History (3)
comment:1 by , 3 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash involving QWindowContainer::parentWasChanged |
comment:2 by , 3 months ago
| Summary: | Crash involving QWindowContainer::parentWasChanged → Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged |
|---|
comment:3 by , 3 months ago
Note:
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Unlike #18630, this crash is with PyQt and does not involve Render By Attribute AFAICT, so perhaps this is a Qt 6.9 problem rather than a wrapper problem.