![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 months ago
Closed 2 months ago
#18476 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-13.4.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00000001f6511e00 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.mlp._mlp, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lxml._elementpath, lxml.etree, chimerax.atom_search.ast, lxml.builder (total: 61)
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_glu88ala_run2/fold_lrba_glu88ala_run2_full_data_0.json"
Opening an AlphaFold PAE file requires first opening the predicted atomic
model. Did not find an open atomic model from the same directory. If the
atomic model is already open choose it using menu
Tools / Structure Prediction / AlphaFold Error Plot
or use the open command structure option, for example
open /Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
defect/fold_lrba_glu88ala_run2/fold_lrba_glu88ala_run2_full_data_0.json
structure #1
If you are trying to open a JSON file that is not AlphaFold PAE data then you
need to specify the specific JSON format such as
open mole_channels.json format mole
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_glu88ala_run2/fold_lrba_glu88ala_run2_full_data_1.json"
> format pae
Opening an AlphaFold PAE file requires first opening the predicted atomic
model. Did not find an open atomic model from the same directory. If the
atomic model is already open choose it using menu
Tools / Structure Prediction / AlphaFold Error Plot
or use the open command structure option, for example
open /Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
defect/fold_lrba_glu88ala_run2/fold_lrba_glu88ala_run2_full_data_1.json
structure #1
If you are trying to open a JSON file that is not AlphaFold PAE data then you
need to specify the specific JSON format such as
open mole_channels.json format mole
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_glu88ala_run2/fold_lrba_glu88ala_run2_model_0.cif"
Chain information for fold_lrba_glu88ala_run2_model_0.cif #1
---
Chain | Description
A | .
Computing secondary structure
> set bgColor white
> view clip false
> log metadata #1
The model has no metadata
> log chains #1
Chain information for fold_lrba_glu88ala_run2_model_0.cif #1
---
Chain | Description
A | .
Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.
> hide ~coil target ar
> undo
> hide dust
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> select @@ss=H,S
22421 atoms, 22875 bonds, 2863 residues, 1 model selected
> hide ~sel
> select subtract #1
Nothing selected
> select backbone
11453 atoms, 11452 bonds, 2863 residues, 1 model selected
> select main
22421 atoms, 22875 bonds, 2863 residues, 1 model selected
> select subtract #1
Nothing selected
> select coil
11465 atoms, 11549 bonds, 1509 residues, 1 model selected
> hide ~sel
> hide sel target a
> hide target m
> show #1 models
> delete atoms sel
> delete bonds sel
> select /A
10956 atoms, 11030 bonds, 147 pseudobonds, 1354 residues, 2 models selected
> select subtract #1
Nothing selected
> select sideonly
5540 atoms, 4413 bonds, 1320 residues, 1 model selected
> select add #1
10956 atoms, 11030 bonds, 147 pseudobonds, 1354 residues, 2 models selected
> select subtract #1
Nothing selected
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> show surfaces
> show atoms
> undo
> show surfaces
> hide surfaces
> show cartoons
> hide cartoons
> show cartoons
> mlp
Map values for surface "fold_lrba_glu88ala_run2_model_0.cif_A SES surface":
minimum -28.91, mean -2.131, maximum 24.02
To also show corresponding color key, enter the above mlp command and add key
true
> hide surfaces
> color bychain
> color byhetero
> color bynucleotide
> lighting flat
> set bgColor white
> set bgColor gray
> set bgColor white
> color #1 #d6d6d6ff
> color #1 silver
> color #1 darkgrey
> save
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_glu88ala_run2/Session 1 - WT.cxs"
> color black pseudobonds
> select pseudobonds
Expected an objects specifier or a keyword
> pseudobonds style dashed
Unknown command: pseudobonds style dashed
> color halfbond true
> color halfbond false
> color black pseudobonds
> color red pseudobonds
> color #1 #424242ff
> color #1 #5e5e5eff
> color #1 silver
> color #5e5e5eff pseudobonds
> pseudobonds radius 0.1
Unknown command: pseudobonds radius 0.1
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/ChimeraX-wild_type_comparison-CTLA4_in_red.cxs" format session
opened ChimeraX session
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/ChimeraX-CTLA4_WT.cxs" format session
opened ChimeraX session
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_1.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_1.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
> hide #1 models
> select coil
13132 atoms, 13250 bonds, 1723 residues, 2 models selected
> delete atoms sel
> delete bonds sel
> set bgColor white
> lighting flat
> color #1 darkgrey
> color #2 darkgrey
> color halfbond false
> color #5e5e5eff pseudobonds
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> set bgColor white
> lighting simple
> hide #!2 atoms
> hide #!2 cartoons
> show #!2 cartoons
> graphics silhouettes false
> lighting simple
> lighting flat
> lighting soft
> lighting flat
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting flat
> color #1 #ff2600ff
> color #1 #fffb00ff
> color #1 #fffc79ff
> show #!1 models
> close #1
> pseudobonds style dashed
Unknown command: pseudobonds style dashed
> style dashed pseudobonds
Expected a keyword
> style pseudobonds dashes
Expected a keyword
> size pseudobondRadius 0.5
Changed 156 pseudobond radii
> size pseudobondRadius 0.1
Changed 156 pseudobond radii
> size pseudobondRadius 0.05
Changed 156 pseudobond radii
> size pseudobondRadius 0.1
Changed 156 pseudobond radii
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_0.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #1
> close #2
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_0.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_summary_confidences_1.json"
JSON file
"/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_summary_confidences_1.json"
is not AlphaFold predicted aligned error data, expected a top level list
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_1.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_1.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #1
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_2.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_2.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #2
> show target m
> view clip false
Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.
> select #1/A:1-2863
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.
> select #1/B:1-223
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> lighting flat A
Expected a keyword
> lighting flat
> select add #1
24153 atoms, 24651 bonds, 3086 residues, 1 model selected
> select subtract #1
Nothing selected
> set bgColor white
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> color darkgrey
> color /A darkgrey
> color /B red
> color #1 #ff9300ff
> color /A darkgrey
> color /B #ff9300ff
> select /A coil
Expected a keyword
> select add #1
24153 atoms, 24651 bonds, 3086 residues, 1 model selected
> select subtract #1
Nothing selected
> select /A coil
Expected a keyword
> select /A coil
Expected a keyword
> select /A coil
Expected a keyword
> select coil /A
Expected a keyword
> select coil
12465 atoms, 12572 bonds, 1637 residues, 1 model selected
> select /A@@ss=C
Nothing selected
> select /A@@ss=C
Nothing selected
> select /A @@ss=C
Nothing selected
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select /A@@ss=C
Nothing selected
> select /A@@ss=H
Nothing selected
> select /A@ss=C
Expected an objects specifier or a keyword
> select /A @ss=C
Expected a keyword
> select /A coil
Expected a keyword
> select #1/A@@ss=C
Nothing selected
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select coil
12465 atoms, 12572 bonds, 1637 residues, 1 model selected
> select coil /A
Expected a keyword
> select /A coil
Expected a keyword
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> hide (sel-residues & (protein|nucleic)) target a
> cartoon hide sel-residues
> show (sel-residues & ((protein&@ca)|(nucleic&@p))) target ab
> undo
> select coil target a
Expected a keyword
> info models
model id #1 type AtomicStructure name fold_lrba_wt_vs_ctla4_wt_model_2.cif
> info models
model id #1 type AtomicStructure name fold_lrba_wt_vs_ctla4_wt_model_2.cif
> listinfo /A
1 models
#1, fold_lrba_wt_vs_ctla4_wt_model_2.cif, shown
24153 atoms, 24651 bonds, 3086 residues, 2 chains (A,B)
> select @@ss=C
Nothing selected
> select #1/A@@ss=C
Nothing selected
> select /A@ss=C
Expected an objects specifier or a keyword
> select #1/A@ss=C
Expected an objects specifier or a keyword
> select #1 /A @ss=C
Expected a keyword
> select #1 @ss=C
Expected a keyword
> select /A:1-100@@ss=C
Nothing selected
> info secondaryStructure
Expected a models specifier or a keyword
> select chain A & ss coil
Expected an objects specifier or a keyword
> select /A & @ss=C
Expected a keyword
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select sel & @@ss=C
Nothing selected
> select @@ss=C
Nothing selected
> select sideonly
11807 atoms, 9250 bonds, 2913 residues, 1 model selected
> elect sideonly /A
Unknown command: elect sideonly /A
> select sideonly /A
Expected a keyword
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select sel & coil
11525 atoms, 11614 bonds, 1515 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> color halfbond false
> color #5e5e5eff pseudobonds
> save
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/Session-03-WT_with_CTLA4.cxs"
> pseudobonds style dash
Unknown command: pseudobonds style dash
> pseudobonds style dash
Unknown command: pseudobonds style dash
> select sel hbonds
Expected a keyword
> select sel pseudobonds
Expected a keyword
> select sel pseudo
Expected a keyword
> pseudo
Unknown command: pseudo
> pseudobond radius 0.02
Unknown command: pseudobond radius 0.02
> style pseudobond radius 0.02
Expected a keyword
> style pseudobond radius 0.02 /A
Expected a keyword
> style pseudobond dashes
Expected a keyword
> style pseudobond dashes 1
Expected a keyword
> select pseudobond
Expected an objects specifier or a keyword
> select pseudobonds
Expected an objects specifier or a keyword
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> undo
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "molecular surfaces" "ghostly white"
Using preset: Molecular Surfaces / Ghostly White
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color white targ s trans 80
> undo
> hide cartoons
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> hide surfaces
> show surfaces
> show cartoons
> hide surfaces
> preset "overall look" interactive
Using preset: Overall Look / Interactive
Preset expands to these ChimeraX commands:
~set bg
graphics silhouettes f
lighting depthCue t
> undo
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> style dashes 0
Changed 1 pseudobond dash
> style dashes 2
Changed 1 pseudobond dash
> style dashes 0.1
Invalid "dashes" argument: Expected an integer
> style dashes 1
Changed 1 pseudobond dash
> style dashes 2
Changed 1 pseudobond dash
> style dashes 3
Changed 1 pseudobond dash
> style dashes 4
Changed 1 pseudobond dash
> style dashes 5
Changed 1 pseudobond dash
> style dashes 8
Changed 1 pseudobond dash
> style dashes 14
Changed 1 pseudobond dash
> style dashes 1
Changed 1 pseudobond dash
> style radius 1
Expected a keyword
> style radius 0.1
Expected a keyword
> color halfbond false
> color #5e5e5eff pseudobonds
> style dashes pseudobonds
Invalid "dashes" argument: Expected an integer
> style pseudobonds dash 1
Expected a keyword
> style dashes 1
Changed 1 pseudobond dash
> style radius 0.1
Expected a keyword
> pseudobonds radius 0.05
Unknown command: pseudobonds radius 0.05
> style pseudobonds radius 0.05
Expected a keyword
> style pseudobonds radius 0.05
Expected a keyword
> pbond radius 0.05
Missing or invalid "atoms" argument: invalid atoms specifier
> style #1 pseudobonds radius 0.05
Expected a keyword
> style /A pseudobonds radius 0.05
Expected a keyword
> ui tool show "Model Panel"
> ui tool show "Scale Bar"
> scalebar
> scalebar off
> pbonds radius 0.05
Unknown command: pbonds radius 0.05
> size pseudobondRadius 0.1
Changed 144 pseudobond radii
> size pseudobondRadius 2
Changed 144 pseudobond radii
> size pseudobondRadius 0.001
Changed 144 pseudobond radii
> size pseudobondRadius 0.05
Changed 144 pseudobond radii
> size pseudobondRadius 0.07
Changed 144 pseudobond radii
> size pseudobondRadius 0.01
Changed 144 pseudobond radii
> size pseudobondRadius 0.02
Changed 144 pseudobond radii
> save
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/Session-04-WT_with_CTLA4-ver2.cxs"
> save
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/Session-05-WT_with_CTLA4-connection.cxs"
> ui tool show Contacts
> contacts sel ignoreHiddenModels true color #fffb00 log true
No atoms match given atom specifier
> ui tool show Contacts
> contacts sel distanceOnly 3.4999999999999996 ignoreHiddenModels true color
> #fffb00 log true
No atoms match given atom specifier
> ui tool show Contacts
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> ui tool show Contacts
> contacts sel distanceOnly 3.5 ignoreHiddenModels true color #fffb00 log true
Ignore distances between atoms separated by 4 bonds or less
Detect intra-residue distances: False
Detect intra-molecule distances: True
510 distances
atom1 atom2 distance
/B CYS 103 SG /B CYS 85 SG 1.925
/B CYS 58 SG /B CYS 129 SG 2.017
/B GLU 132 OE1 /B LYS 130 NZ 2.343
/B GLU 155 OE1 /A ARG 854 CB 2.355
/B LYS 213 NZ /A ASP 1817 OD2 2.415
/B ARG 75 NH2 /B MET 122 O 2.416
/B GLU 155 OE1 /A ARG 854 N 2.456
/B SER 62 OG /B GLY 64 O 2.487
/B GLU 155 OE2 /A ARG 854 CB 2.490
/B VAL 200 N /A GLU 1876 OE2 2.506
/B ILE 53 O /B SER 49 N 2.541
/B THR 147 OG1 /B GLN 42 NE2 2.543
/B VAL 33 O /B CYS 35 N 2.574
/B GLN 42 NE2 /B THR 147 N 2.598
/B LEU 74 O /B ILE 128 N 2.629
/B ILE 152 CG2 /A ASN 851 O 2.636
/B GLU 155 OE2 /A ARG 854 CD 2.642
/B ASP 123 O /B TYR 127 OH 2.649
/B THR 104 O /B THR 115 N 2.650
/B PRO 43 O /B THR 147 OG1 2.655
/B TYR 218 OH /A ARG 1516 CD 2.660
/B ILE 31 O /B VAL 33 N 2.671
/B TYR 218 N /A PHE 1419 O 2.676
/B LEU 25 O /B PHE 27 N 2.687
/B LEU 126 O /B GLN 76 N 2.690
/B SER 178 O /B THR 182 OG1 2.691
/B CYS 35 O /B ALA 37 N 2.694
/B VAL 184 O /B SER 187 OG 2.705
/B THR 197 O /B GLY 199 N 2.707
/B CYS 129 CB /B CYS 58 SG 2.709
/B GLU 59 O /B ALA 41 N 2.711
/B THR 147 N /B TYR 127 O 2.714
/B THR 82 O /B ARG 75 N 2.718
/B LEU 28 O /B PHE 30 N 2.722
/B THR 115 O /B THR 104 N 2.726
/B TYR 150 CB /A ASN 851 ND2 2.729
/B GLU 155 CD /A ARG 854 CB 2.743
/B LEU 29 O /B ILE 31 N 2.752
/B GLN 42 NE2 /B TYR 127 O 2.754
/B LEU 15 O /B ALA 16 O 2.756
/B CYS 85 O /B VAL 73 N 2.765
/B TYR 127 N /B THR 147 O 2.766
/B THR 67 N /B TYR 135 O 2.771
/B ALA 54 O /B ILE 116 N 2.774
/B SER 50 OG /A LYS 903 NZ 2.774
/B ILE 152 CG1 /A ASN 851 OD1 2.775
/B ILE 102 O /B GLN 117 N 2.783
/B ARG 70 O /B GLU 132 N 2.784
/B ALA 87 O /B VAL 71 N 2.785
/B GLN 111 O /B SER 108 N 2.788
/B VAL 112 O /B CYS 58 N 2.789
/B CYS 103 CB /B CYS 85 SG 2.789
/B LYS 130 O /B THR 72 N 2.793
/B THR 106 O /B ASN 113 N 2.795
/B GLU 132 O /B ARG 70 N 2.797
/B ILE 102 CG2 /B GLN 117 O 2.798
/B GLN 42 OE1 /B CYS 129 N 2.804
/B ALA 121 O /B THR 124 OG1 2.805
/B ARG 120 O /B ASP 123 N 2.806
/B THR 72 O /B LYS 130 N 2.807
/B GLU 132 OE1 /B TYR 139 OH 2.808
/B ARG 75 O /B THR 82 N 2.808
/B PHE 26 O /B LEU 28 N 2.808
/B PHE 34 O /B LYS 36 N 2.809
/B LYS 130 CE /B GLU 132 OE1 2.809
/B TYR 201 O /A LYS 1527 CE 2.812
/B ALA 48 N /B TYR 150 O 2.812
/B PRO 32 O /B PHE 34 N 2.821
/B VAL 73 O /B VAL 84 N 2.823
/B PRO 205 O /B THR 207 N 2.824
/B VAL 131 O /B GLY 142 N 2.825
/B ALA 77 O /B GLN 80 N 2.827
/B TYR 89 CD1 /B LEU 95 CD1 2.828
/B ASP 153 OD1 /B ALA 121 N 2.832
/B LEU 74 N /B ILE 128 O 2.838
/B GLY 142 O /B VAL 131 N 2.840
/B ALA 41 O /B GLU 59 N 2.842
/B PHE 56 O /B LEU 114 N 2.848
/B TYR 60 OH /B MET 91 CE 2.850
/B VAL 71 O /B ALA 87 N 2.857
/B CYS 58 O /B VAL 112 N 2.859
/B CYS 129 O /B GLY 144 N 2.860
/B ARG 120 N /B ASP 123 OD2 2.861
/B GLY 125 O /B ILE 149 N 2.865
/B THR 67 O /B MET 91 N 2.871
/B LEU 114 O /B PHE 56 N 2.878
/B GLN 80 O /B ALA 77 N 2.881
/B SER 49 O /B GLY 52 N 2.882
/B ALA 44 O /B GLN 148 N 2.884
/B VAL 69 N /B TYR 89 O 2.885
/B TYR 150 C /A ASN 851 ND2 2.889
/B CYS 58 CB /B CYS 129 SG 2.890
/B ILE 116 O /B ALA 54 N 2.890
/B TYR 150 CD1 /A ILE 847 CG2 2.898
/B GLN 148 O /B VAL 46 N 2.899
/B GLY 64 O /B ALA 66 N 2.899
/B PHE 6 O /B GLN 7 O 2.904
/B PRO 209 O /B CYS 211 N 2.905
/B TYR 140 O /B LEU 133 N 2.905
/B TYR 135 O /B GLU 68 N 2.908
/B PHE 27 O /B LEU 29 N 2.908
/B TYR 60 OH /B TYR 89 OH 2.908
/B SER 194 O /B LEU 196 N 2.908
/B VAL 69 O /B TYR 89 N 2.919
/B MET 90 O /B ASN 93 N 2.920
/B CYS 85 CB /B CYS 103 SG 2.927
/B LEU 13 O /B ASN 14 O 2.927
/B ALA 77 O /B SER 79 N 2.930
/B ASP 100 O /B ILE 102 N 2.931
/B TYR 135 O /B THR 67 OG1 2.932
/B PHE 30 O /B PRO 32 N 2.942
/B ASN 113 O /B THR 106 N 2.944
/B GLU 155 OE1 /A ARG 854 CA 2.947
/B LEU 24 O /B PHE 26 N 2.958
/B ILE 220 CD1 /A PHE 1419 CD2 2.964
/B SER 49 O /B ARG 51 N 2.972
/B GLU 68 O /B MET 134 N 2.978
/B ILE 53 CD1 /A MET 1332 CE 2.983
/B GLN 42 NE2 /B GLY 146 C 2.990
/B ARG 51 CD /A MET 1332 CE 2.991
/B THR 67 O /B MET 90 CA 2.992
/B VAL 46 O /B TYR 150 N 2.994
/B ASP 153 O /B GLU 155 N 2.996
/B LYS 36 O /B MET 38 N 2.996
/B LYS 213 NZ /A GLU 1813 OE1 2.997
/B GLY 52 O /B LEU 119 N 3.000
/B LEU 95 CD2 /B PHE 97 CE2 3.005
/B THR 115 O /B THR 104 O 3.010
/B VAL 151 N /A ASN 851 ND2 3.016
/B LEU 196 O /B THR 198 N 3.017
/B HIS 39 O /B ALA 61 N 3.019
/B LEU 95 O /B GLY 105 O 3.023
/B GLU 83 OE1 /B ALA 86 CB 3.023
/B ALA 61 O /B PRO 63 CD 3.034
/B VAL 200 O /B MET 204 N 3.040
/B LYS 130 CE /B LEU 141 CD1 3.041
/B TYR 150 CE1 /A ILE 847 CG2 3.043
/B LYS 192 O /B SER 194 N 3.047
/B GLY 105 CA /B ASN 113 O 3.049
/B ASN 110 O /B TYR 60 N 3.054
/B SER 55 OG /B THR 115 OG1 3.058
/B PRO 156 O /B PRO 158 N 3.059
/B LYS 65 O /B PRO 136 CD 3.066
/B ILE 222 CD1 /A ARG 1334 NH1 3.069
/B TYR 150 CG /A ILE 847 CG2 3.071
/B ARG 8 O /B HIS 9 O 3.071
/B GLY 125 N /B ILE 149 O 3.071
/B ALA 37 O /B HIS 39 N 3.073
/B GLY 146 N /B GLY 144 O 3.074
/B MET 204 SD /A PHE 1821 CZ 3.076
/B ARG 75 NH1 /B ASP 123 OD1 3.082
/B TYR 218 O /A PHE 1419 O 3.086
/B SER 108 O /B GLN 111 N 3.087
/B LYS 10 O /B ALA 11 O 3.090
/B GLY 199 O /B VAL 202 N 3.092
/B TYR 60 O /B SER 62 N 3.093
/B ASN 93 O /B SER 107 OG 3.094
/B PRO 158 O /B SER 160 N 3.095
/B GLU 155 OE2 /A ARG 854 CG 3.099
/B MET 38 CE /B VAL 131 O 3.100
/B THR 198 O /B GLY 199 O 3.104
/B GLU 155 O /B CYS 157 N 3.104
/B THR 207 OG1 /A GLN 1530 NE2 3.106
/B ILE 222 CD1 /A ARG 1334 CZ 3.107
/B SER 171 OG /B ALA 168 O 3.110
/B THR 124 OG1 /B VAL 151 N 3.117
/B TYR 218 O /A PHE 1419 C 3.120
/B PRO 21 O /B THR 23 N 3.122
/B ALA 121 O /B THR 124 N 3.124
/B THR 207 O /B PRO 209 N 3.128
/B GLU 68 OE1 /B THR 88 CG2 3.128
/B SER 171 O /B PHE 175 CD2 3.131
/B CYS 22 O /B THR 23 O 3.132
/B PRO 195 O /B LEU 196 O 3.135
/B PRO 221 O /B ASN 223 N 3.141
/B ARG 120 O /B VAL 151 CB 3.141
/B LYS 203 CE /B THR 198 OG1 3.143
/B CYS 3 O /B LEU 4 O 3.144
/B LEU 47 CD2 /A ILE 896 CG1 3.145
/B VAL 84 O /B ASP 100 OD2 3.146
/B PRO 138 O /B TYR 140 CD2 3.146
/B SER 50 O /B PRO 154 CB 3.146
/B LYS 191 N /B MET 189 O 3.149
/B ILE 222 CD1 /A ARG 1334 NH2 3.151
/B SER 55 CA /B LEU 114 O 3.152
/B THR 207 O /B PRO 209 CD 3.154
/B ILE 149 N /B THR 147 O 3.157
/B ASP 123 O /B TYR 127 CE2 3.158
/B ARG 120 O /B MET 122 N 3.161
/B TRP 20 O /B PRO 21 O 3.164
/B LYS 203 O /B PRO 205 N 3.164
/B LEU 196 O /B THR 197 O 3.169
/B GLN 80 O /B ALA 77 O 3.169
/B TYR 201 CE2 /A GLN 1528 OE1 3.170
/B ALA 169 O /B SER 172 OG 3.171
/B CYS 211 O /B LYS 213 N 3.171
/B THR 182 O /B LEU 186 N 3.177
/B ARG 18 O /B THR 19 O 3.180
/B PRO 43 CD /B VAL 57 O 3.181
/B ALA 66 O /B MET 91 SD 3.182
/B GLN 214 O /B GLN 216 N 3.183
/B PRO 205 O /A GLN 1530 OE1 3.185
/B ARG 75 NH2 /B ASP 123 CA 3.186
/B MET 90 O /B GLY 92 N 3.186
/B ALA 61 O /B PRO 63 N 3.187
/B LYS 213 CE /A ASP 1817 OD2 3.187
/B GLN 42 NE2 /B THR 147 CB 3.188
/B GLN 76 OE1 /B ILE 128 CD1 3.189
/B PHE 97 CZ /B LEU 114 CD2 3.190
/B SER 50 OG /A TYR 899 OH 3.193
/B ALA 121 CB /B ASP 153 OD2 3.196
/B GLN 148 O /B VAL 46 O 3.196
/B PRO 43 O /B THR 147 CB 3.199
/B LEU 119 N /B GLN 117 O 3.200
/B ALA 48 CA /B ILE 53 O 3.201
/B GLY 199 O /B TYR 201 N 3.203
/B ILE 152 CD1 /A ASN 851 OD1 3.203
/B VAL 131 O /B GLY 142 O 3.204
/B THR 198 O /B LYS 203 CE 3.205
/B TYR 89 O /B VAL 69 O 3.209
/B GLY 199 O /B LYS 203 N 3.209
/B TYR 150 CA /A ASN 851 ND2 3.210
/B ALA 121 O /B THR 124 CB 3.212
/B ALA 121 O /B ASP 123 N 3.212
/B PHE 30 O /B PRO 32 CD 3.215
/B PRO 43 O /B THR 147 CG2 3.215
/B GLU 132 CD /B TYR 139 OH 3.216
/B CYS 3 O /B GLY 5 N 3.218
/B ALA 2 O /B LEU 4 N 3.222
/B PHE 219 O /B PRO 221 CD 3.227
/B LEU 47 O /A ARG 895 NH2 3.228
/B MET 38 CG /B ALA 61 O 3.231
/B VAL 200 CB /A GLU 1876 OE2 3.232
/B MET 38 SD /B LEU 133 CD1 3.233
/B ILE 152 CG1 /A ASN 851 CG 3.234
/B SER 160 O /B PHE 162 N 3.234
/B VAL 151 CG1 /B ARG 120 O 3.236
/B PHE 215 O /B GLN 216 CG 3.237
/B SER 185 O /B LYS 188 N 3.238
/B THR 207 O /A GLN 1530 NE2 3.238
/B LYS 203 N /B VAL 200 O 3.238
/B MET 38 O /B GLY 142 CA 3.239
/B GLN 42 OE1 /B GLY 144 CA 3.249
/B ARG 120 CA /B ASP 153 OD1 3.251
/B GLN 148 CG /B TYR 150 CE2 3.251
/B THR 124 CA /B ILE 149 O 3.252
/B PRO 136 O /B PRO 137 O 3.253
/B MET 204 SD /A PHE 1821 CE2 3.253
/B VAL 170 O /B SER 172 N 3.254
/B ILE 53 CG2 /B THR 115 CG2 3.256
/B VAL 46 O /B ILE 149 CA 3.258
/B ILE 116 O /B ILE 53 CA 3.258
/B GLY 146 CA /B GLN 42 NE2 3.259
/B GLY 52 CA /B LEU 119 O 3.260
/B ILE 220 CD1 /A ARG 1514 CG 3.260
/B LYS 188 N /B LEU 186 O 3.263
/B TYR 89 OH /B VAL 112 CG2 3.264
/B PRO 138 CG /B TYR 140 OH 3.266
/B GLY 52 O /B LEU 119 CB 3.268
/B TYR 60 O /B ASN 110 CB 3.268
/B GLY 199 C /A GLU 1876 OE2 3.269
/B ALA 87 O /B VAL 71 O 3.272
/B THR 115 CG2 /B SER 55 OG 3.275
/B SER 108 O /B ASN 110 N 3.275
/B GLY 52 O /B GLY 118 N 3.276
/B VAL 71 O /B ALA 86 CA 3.276
/B ALA 48 O /B SER 49 O 3.276
/B LEU 74 O /B TYR 127 CA 3.277
/B PRO 156 O /B PRO 158 CD 3.278
/B LYS 130 O /B THR 72 O 3.279
/B MET 204 N /B TYR 201 O 3.279
/B TYR 89 CD2 /B MET 90 O 3.280
/B ASP 123 O /B GLY 125 N 3.280
/B ARG 193 O /B SER 194 O 3.282
/B LEU 174 O /B PHE 176 N 3.283
/B MET 1 O /B ALA 2 O 3.287
/B MET 134 N /B GLU 132 O 3.287
/B ILE 152 CG2 /A ARG 857 NH1 3.288
/B SER 187 N /B SER 185 O 3.290
/B ASP 159 O /B ASP 161 N 3.293
/B ARG 120 O /B ASP 123 CB 3.295
/B GLN 42 OE1 /B CYS 129 CB 3.296
/B PRO 154 O /B PRO 156 N 3.296
/B MET 38 O /B VAL 40 N 3.299
/B VAL 200 CA /A GLU 1876 OE2 3.300
/B GLY 5 O /B GLN 7 N 3.304
/B SER 49 OG /B ILE 53 N 3.305
/B ILE 128 CG2 /B ILE 143 CG2 3.305
/B SER 178 O /B LEU 180 N 3.306
/B ARG 75 O /B VAL 81 CA 3.308
/B GLU 59 O /B ALA 41 O 3.308
/B PHE 56 O /B ASN 113 OD1 3.310
/B LEU 133 O /B TYR 140 N 3.311
/B ASN 110 O /B TYR 60 CD1 3.311
/B LEU 95 CD1 /B TYR 89 CE1 3.311
/B ILE 152 CB /A ASN 851 O 3.311
/B PRO 43 O /B THR 147 CA 3.313
/B ILE 53 O /B ALA 48 C 3.313
/B SER 62 O /B GLY 64 N 3.315
/B ALA 121 N /B ASP 153 CG 3.319
/B VAL 200 O /B MET 204 CG 3.320
/B ARG 51 N /B SER 49 OG 3.320
/B THR 67 OG1 /B TYR 135 C 3.321
/B THR 67 OG1 /B TYR 135 CD1 3.323
/B CYS 157 O /B ASP 159 N 3.324
/B PRO 209 CD /A SER 1526 CB 3.325
/B LEU 114 O /B PHE 56 O 3.325
/B TYR 150 O /A ASN 851 ND2 3.326
/B ARG 193 O /B PRO 195 N 3.326
/B GLY 199 CA /A GLU 1876 OE1 3.327
/B LYS 130 NZ /B GLU 132 CD 3.329
/B PHE 97 CB /B CYS 103 O 3.331
/B ASP 123 O /B TYR 127 CZ 3.332
/B GLN 42 O /B PRO 43 O 3.336
/B TYR 150 CZ /A ILE 847 CG2 3.336
/B GLU 210 O /B GLU 212 N 3.339
/B GLN 216 O /B TYR 218 N 3.339
/B GLY 199 O /B VAL 200 O 3.341
/B TYR 201 O /B MET 204 CB 3.342
/B ASN 145 O /B GLY 146 O 3.343
/B LEU 74 CA /B THR 82 O 3.343
/B ALA 54 O /B THR 115 CA 3.344
/B ILE 152 O /B PRO 154 N 3.344
/B LYS 192 N /B LEU 190 O 3.344
/B VAL 45 O /B VAL 46 CG2 3.345
/B GLU 132 CG /B TYR 139 OH 3.347
/B ALA 168 N /B ILE 166 O 3.348
/B ILE 149 O /B THR 124 CG2 3.350
/B GLU 132 CA /B TYR 140 O 3.351
/B CYS 22 O /B LEU 24 N 3.353
/B GLY 125 O /B TYR 127 CD2 3.354
/B VAL 184 N /B THR 182 O 3.354
/B LEU 186 O /B LEU 190 N 3.354
/B ILE 166 O /B ALA 169 N 3.355
/B TYR 218 O /A PHE 1419 CB 3.355
/B ILE 128 CG2 /B GLY 144 O 3.356
/B LEU 167 O /B SER 171 OG 3.358
/B TYR 201 OH /A GLN 1528 OE1 3.359
/B VAL 151 CG1 /B ARG 120 C 3.360
/B LYS 203 O /B PRO 205 CD 3.360
/B THR 182 O /B LEU 186 CB 3.362
/B LYS 65 O /B PRO 136 CG 3.362
/B PRO 217 C /A PHE 1419 O 3.362
/B ALA 66 CB /B LEU 133 CD2 3.363
/B VAL 69 O /B TYR 89 CD1 3.364
/B ARG 70 CA /B ALA 87 O 3.365
/B LEU 163 O /B TRP 165 N 3.365
/B LEU 119 O /B VAL 151 CG1 3.366
/B VAL 151 C /A ASN 851 ND2 3.367
/B GLU 212 O /B GLN 214 N 3.368
/B PHE 175 O /B SER 178 OG 3.368
/B ALA 44 O /B VAL 45 CG2 3.369
/B CYS 103 O /B PHE 97 CG 3.371
/B ARG 70 CD /B GLU 132 OE2 3.371
/B CYS 103 O /B PHE 97 CD2 3.373
/B ALA 87 CB /B PHE 97 CD1 3.373
/B TYR 150 CD2 /A ILE 847 CG2 3.376
/B PRO 136 CD /B THR 67 OG1 3.376
/B VAL 57 CA /B VAL 112 O 3.376
/B PRO 154 O /B GLU 155 O 3.380
/B ILE 220 CD1 /A ASP 1415 OD1 3.380
/B SER 178 O /B THR 182 N 3.380
/B ASN 113 OD1 /B VAL 57 CG2 3.381
/B ALA 169 N /B LEU 167 O 3.381
/B PRO 138 O /B TYR 140 CE2 3.382
/B GLN 111 N /B GLY 109 O 3.383
/B CYS 85 CB /B CYS 103 CB 3.384
/B MET 204 CE /A PHE 1821 CZ 3.384
/B GLY 146 CA /B TYR 127 O 3.385
/B VAL 45 CA /B GLN 148 O 3.386
/B SER 185 OG /B THR 182 O 3.388
/B VAL 200 N /A GLU 1876 CD 3.391
/B VAL 46 CG1 /B SER 55 O 3.391
/B TYR 218 CZ /A ARG 1516 CD 3.393
/B PRO 217 CA /A PHE 1419 O 3.393
/B PHE 179 O /B ALA 183 N 3.394
/B LEU 164 O /B ALA 168 N 3.396
/B ARG 75 CB /B VAL 84 CG2 3.397
/B GLY 146 N /B GLN 42 OE1 3.398
/B GLY 173 O /B PHE 175 N 3.399
/B MET 189 O /B LYS 192 N 3.399
/B LEU 181 O /B SER 185 OG 3.399
/B TYR 140 CE2 /B PRO 138 CG 3.399
/B VAL 151 O /A ASN 851 ND2 3.401
/B CYS 103 CA /B THR 115 O 3.402
/B ARG 75 NH2 /B MET 122 C 3.403
/B TYR 135 CD1 /B PRO 136 N 3.404
/B ARG 120 O /B ALA 121 O 3.405
/B LEU 74 O /B TYR 127 C 3.406
/B GLN 76 CA /B GLN 80 O 3.406
/B VAL 40 CA /B GLU 59 O 3.406
/B VAL 202 N /B VAL 200 O 3.407
/B GLU 94 O /B THR 96 N 3.408
/B GLN 42 CD /B GLY 146 N 3.409
/B GLY 144 O /B ILE 143 O 3.410
/B THR 67 O /B MET 90 C 3.411
/B GLN 42 NE2 /B THR 147 CA 3.412
/B GLY 199 CA /A GLU 1876 OE2 3.412
/B THR 207 O /A SER 1526 OG 3.414
/B THR 115 CA /B THR 104 O 3.414
/B LEU 98 O /B ASP 99 O 3.415
/B THR 72 CG2 /B GLU 83 OE1 3.415
/B ASP 123 CA /B ARG 120 O 3.416
/B ASP 153 OD1 /B ARG 120 CB 3.416
/B LEU 133 CD1 /B PRO 63 CD 3.417
/B THR 72 CA /B CYS 85 O 3.419
/B LEU 133 O /B TYR 139 CA 3.419
/B TYR 201 O /A LYS 1527 NZ 3.420
/B LYS 203 N /B TYR 201 O 3.421
/B TYR 177 O /B PHE 179 N 3.421
/B ARG 75 O /B THR 82 OG1 3.422
/B ARG 51 NH1 /A MET 1332 SD 3.422
/B LYS 130 CA /B GLY 142 O 3.424
/B TYR 135 CG /B PRO 136 CA 3.425
/B GLU 155 O /B PRO 156 O 3.426
/B PRO 138 CG /B TYR 140 CZ 3.427
/B SER 49 OG /B ILE 53 CB 3.427
/B TYR 140 N /B PRO 138 O 3.429
/B ASP 161 O /B LEU 163 N 3.429
/B LYS 36 O /B ALA 37 O 3.430
/B THR 182 O /B ALA 183 O 3.432
/B GLN 42 CD /B THR 147 OG1 3.432
/B VAL 69 CA /B GLU 132 O 3.435
/B GLN 111 O /B SER 108 O 3.435
/B ILE 220 O /B ILE 222 N 3.436
/B PHE 56 CE2 /B CYS 58 SG 3.436
/B THR 67 O /B MET 90 CB 3.436
/B MET 1 O /B CYS 3 N 3.436
/B PRO 206 O /B GLU 208 N 3.439
/B TYR 201 N /A GLU 1876 OE2 3.440
/B PRO 158 O /B ASP 159 O 3.441
/B ILE 53 O /B SER 49 OG 3.441
/B SER 171 O /B GLY 173 N 3.443
/B GLY 125 C /B GLN 148 NE2 3.443
/B GLN 76 O /B LEU 126 N 3.445
/B ASP 153 CG /B ALA 121 CB 3.445
/B GLY 125 O /B GLN 148 CA 3.446
/B VAL 69 O /B THR 88 CA 3.447
/B THR 115 O /B THR 104 OG1 3.447
/B LEU 47 CD2 /A ASN 851 OD1 3.451
/B TYR 218 O /B ILE 220 N 3.451
/B ILE 152 CG1 /A ASN 851 O 3.451
/B ARG 75 CA /B LEU 126 O 3.452
/B LEU 119 C /B VAL 151 CG1 3.455
/B GLU 208 O /B GLU 210 N 3.455
/B TYR 89 CE2 /B SER 107 CB 3.459
/B VAL 200 O /B TYR 201 O 3.459
/B PHE 30 O /B ILE 31 O 3.461
/B GLN 214 O /B PHE 215 O 3.461
/B GLN 148 CG /B TYR 150 CZ 3.461
/B MET 91 CE /B ASN 110 OD1 3.462
/B GLU 59 CA /B ASN 110 O 3.463
/B LEU 133 CD2 /B VAL 69 CG2 3.464
/B THR 124 CG2 /B TYR 150 CD1 3.464
/B LEU 126 O /B GLN 76 O 3.467
/B LYS 130 N /B ILE 128 O 3.468
/B THR 207 O /A SER 1526 CB 3.469
/B TYR 89 CG /B LEU 95 CD1 3.469
/B THR 82 O /B LEU 74 C 3.469
/B VAL 184 O /B SER 187 N 3.470
/B VAL 84 N /B THR 82 O 3.470
/B LYS 213 NZ /A ASP 1817 CG 3.470
/B PHE 175 O /B TYR 177 N 3.472
/B THR 104 OG1 /B THR 115 CB 3.472
/B LEU 25 O /B PHE 27 CD2 3.472
/B TYR 127 CD2 /B ILE 149 CD1 3.472
/B ALA 183 N /B LEU 181 O 3.473
/B LEU 164 O /B ILE 166 N 3.474
/B ASP 123 O /B THR 124 O 3.474
/B LYS 188 O /B LYS 191 N 3.474
/B THR 182 OG1 /B PHE 179 O 3.475
/B GLU 68 O /B TYR 135 N 3.476
/B THR 82 O /B ARG 75 O 3.476
/B MET 204 N /B VAL 202 O 3.476
/B ILE 152 CA /A ASN 851 O 3.477
/B LEU 181 O /B VAL 184 N 3.478
/B ALA 16 O /B THR 17 O 3.479
/B GLU 59 CD /B GLN 111 NE2 3.480
/B ARG 51 CB /A MET 1332 CE 3.480
/B MET 122 O /B THR 124 N 3.480
/B GLY 52 O /B ILE 116 O 3.484
/B ARG 75 NH2 /B ASP 123 C 3.484
/B ASP 123 CB /B TYR 127 OH 3.486
/B ASP 153 OD1 /B ARG 120 C 3.487
/B GLN 111 NE2 /B GLU 59 OE1 3.487
/B LEU 47 CD1 /A ALA 892 O 3.488
/B LEU 186 O /B MET 189 N 3.488
/B SER 107 CA /B GLN 111 O 3.488
/B PRO 43 O /B VAL 45 N 3.489
/B LEU 114 O /B SER 55 C 3.489
/B CYS 58 O /B GLN 111 CA 3.489
/B ILE 53 O /B SER 49 CB 3.490
/B TYR 218 CB /A ALA 1517 CB 3.491
/B VAL 71 CA /B LYS 130 O 3.491
/B GLN 111 NE2 /B GLU 59 OE2 3.491
/B PHE 179 O /B ALA 183 CB 3.492
/B LEU 95 CD2 /B GLY 105 CA 3.492
/B ARG 70 O /B VAL 131 CA 3.492
/B ILE 116 O /B ALA 54 O 3.493
/B CYS 157 O /B PRO 158 O 3.493
/B THR 72 O /B LYS 130 CB 3.493
/B MET 90 O /B MET 91 O 3.493
/B VAL 45 CG1 /A ALA 892 CB 3.493
/B GLN 42 CD /B GLY 146 CA 3.494
/B TYR 127 O /B THR 147 O 3.495
/B PHE 162 O /B LEU 164 N 3.495
/B TYR 150 O /B ALA 48 CB 3.496
/B ASP 100 O /B CYS 103 N 3.496
/B ASN 110 O /B TYR 60 CE1 3.499
/B THR 106 O /B VAL 112 CA 3.500
510 distances
> contacts sel distanceOnly 3.5 ignoreHiddenModels true color #fffb00 log true
Ignore distances between atoms separated by 4 bonds or less
Detect intra-residue distances: False
Detect intra-molecule distances: True
510 distances
atom1 atom2 distance
/B CYS 103 SG /B CYS 85 SG 1.925
/B CYS 58 SG /B CYS 129 SG 2.017
/B GLU 132 OE1 /B LYS 130 NZ 2.343
/B GLU 155 OE1 /A ARG 854 CB 2.355
/B LYS 213 NZ /A ASP 1817 OD2 2.415
/B ARG 75 NH2 /B MET 122 O 2.416
/B GLU 155 OE1 /A ARG 854 N 2.456
/B SER 62 OG /B GLY 64 O 2.487
/B GLU 155 OE2 /A ARG 854 CB 2.490
/B VAL 200 N /A GLU 1876 OE2 2.506
/B ILE 53 O /B SER 49 N 2.541
/B THR 147 OG1 /B GLN 42 NE2 2.543
/B VAL 33 O /B CYS 35 N 2.574
/B GLN 42 NE2 /B THR 147 N 2.598
/B LEU 74 O /B ILE 128 N 2.629
/B ILE 152 CG2 /A ASN 851 O 2.636
/B GLU 155 OE2 /A ARG 854 CD 2.642
/B ASP 123 O /B TYR 127 OH 2.649
/B THR 104 O /B THR 115 N 2.650
/B PRO 43 O /B THR 147 OG1 2.655
/B TYR 218 OH /A ARG 1516 CD 2.660
/B ILE 31 O /B VAL 33 N 2.671
/B TYR 218 N /A PHE 1419 O 2.676
/B LEU 25 O /B PHE 27 N 2.687
/B LEU 126 O /B GLN 76 N 2.690
/B SER 178 O /B THR 182 OG1 2.691
/B CYS 35 O /B ALA 37 N 2.694
/B VAL 184 O /B SER 187 OG 2.705
/B THR 197 O /B GLY 199 N 2.707
/B CYS 129 CB /B CYS 58 SG 2.709
/B GLU 59 O /B ALA 41 N 2.711
/B THR 147 N /B TYR 127 O 2.714
/B THR 82 O /B ARG 75 N 2.718
/B LEU 28 O /B PHE 30 N 2.722
/B THR 115 O /B THR 104 N 2.726
/B TYR 150 CB /A ASN 851 ND2 2.729
/B GLU 155 CD /A ARG 854 CB 2.743
/B LEU 29 O /B ILE 31 N 2.752
/B GLN 42 NE2 /B TYR 127 O 2.754
/B LEU 15 O /B ALA 16 O 2.756
/B CYS 85 O /B VAL 73 N 2.765
/B TYR 127 N /B THR 147 O 2.766
/B THR 67 N /B TYR 135 O 2.771
/B ALA 54 O /B ILE 116 N 2.774
/B SER 50 OG /A LYS 903 NZ 2.774
/B ILE 152 CG1 /A ASN 851 OD1 2.775
/B ILE 102 O /B GLN 117 N 2.783
/B ARG 70 O /B GLU 132 N 2.784
/B ALA 87 O /B VAL 71 N 2.785
/B GLN 111 O /B SER 108 N 2.788
/B VAL 112 O /B CYS 58 N 2.789
/B CYS 103 CB /B CYS 85 SG 2.789
/B LYS 130 O /B THR 72 N 2.793
/B THR 106 O /B ASN 113 N 2.795
/B GLU 132 O /B ARG 70 N 2.797
/B ILE 102 CG2 /B GLN 117 O 2.798
/B GLN 42 OE1 /B CYS 129 N 2.804
/B ALA 121 O /B THR 124 OG1 2.805
/B ARG 120 O /B ASP 123 N 2.806
/B THR 72 O /B LYS 130 N 2.807
/B GLU 132 OE1 /B TYR 139 OH 2.808
/B ARG 75 O /B THR 82 N 2.808
/B PHE 26 O /B LEU 28 N 2.808
/B PHE 34 O /B LYS 36 N 2.809
/B LYS 130 CE /B GLU 132 OE1 2.809
/B TYR 201 O /A LYS 1527 CE 2.812
/B ALA 48 N /B TYR 150 O 2.812
/B PRO 32 O /B PHE 34 N 2.821
/B VAL 73 O /B VAL 84 N 2.823
/B PRO 205 O /B THR 207 N 2.824
/B VAL 131 O /B GLY 142 N 2.825
/B ALA 77 O /B GLN 80 N 2.827
/B TYR 89 CD1 /B LEU 95 CD1 2.828
/B ASP 153 OD1 /B ALA 121 N 2.832
/B LEU 74 N /B ILE 128 O 2.838
/B GLY 142 O /B VAL 131 N 2.840
/B ALA 41 O /B GLU 59 N 2.842
/B PHE 56 O /B LEU 114 N 2.848
/B TYR 60 OH /B MET 91 CE 2.850
/B VAL 71 O /B ALA 87 N 2.857
/B CYS 58 O /B VAL 112 N 2.859
/B CYS 129 O /B GLY 144 N 2.860
/B ARG 120 N /B ASP 123 OD2 2.861
/B GLY 125 O /B ILE 149 N 2.865
/B THR 67 O /B MET 91 N 2.871
/B LEU 114 O /B PHE 56 N 2.878
/B GLN 80 O /B ALA 77 N 2.881
/B SER 49 O /B GLY 52 N 2.882
/B ALA 44 O /B GLN 148 N 2.884
/B VAL 69 N /B TYR 89 O 2.885
/B TYR 150 C /A ASN 851 ND2 2.889
/B CYS 58 CB /B CYS 129 SG 2.890
/B ILE 116 O /B ALA 54 N 2.890
/B TYR 150 CD1 /A ILE 847 CG2 2.898
/B GLN 148 O /B VAL 46 N 2.899
/B GLY 64 O /B ALA 66 N 2.899
/B PHE 6 O /B GLN 7 O 2.904
/B PRO 209 O /B CYS 211 N 2.905
/B TYR 140 O /B LEU 133 N 2.905
/B TYR 135 O /B GLU 68 N 2.908
/B PHE 27 O /B LEU 29 N 2.908
/B TYR 60 OH /B TYR 89 OH 2.908
/B SER 194 O /B LEU 196 N 2.908
/B VAL 69 O /B TYR 89 N 2.919
/B MET 90 O /B ASN 93 N 2.920
/B CYS 85 CB /B CYS 103 SG 2.927
/B LEU 13 O /B ASN 14 O 2.927
/B ALA 77 O /B SER 79 N 2.930
/B ASP 100 O /B ILE 102 N 2.931
/B TYR 135 O /B THR 67 OG1 2.932
/B PHE 30 O /B PRO 32 N 2.942
/B ASN 113 O /B THR 106 N 2.944
/B GLU 155 OE1 /A ARG 854 CA 2.947
[deleted to fit within ticket limits]
/B PRO 217 CG /A MET 1342 SD 4.640
/B GLN 216 N /A PHE 1520 O 4.642
/B GLU 155 CG /A ARG 854 N 4.644
/B VAL 202 N /A LYS 1527 CE 4.645
/B PRO 205 CD /A GLN 1530 OE1 4.645
/B SER 50 N /A TYR 899 CE1 4.645
/B ARG 51 CZ /A MET 1332 CG 4.646
/B TYR 150 CD1 /A LYS 848 CG 4.648
/B TYR 218 N /A PHE 1419 CA 4.651
/B TYR 201 OH /A LYS 1527 CG 4.652
/B TYR 201 CE2 /A ARG 1441 CZ 4.653
/B TYR 218 O /A PHE 1419 CG 4.653
/B VAL 200 CG2 /A LEU 1872 CA 4.656
/B TYR 218 CD2 /A ALA 1517 CB 4.656
/B ARG 51 NH2 /A PHE 1344 CD1 4.656
/B VAL 202 N /A GLU 1876 OE1 4.658
/B LEU 47 CD1 /A ARG 895 CB 4.659
/B LEU 47 CD2 /A ASN 851 ND2 4.660
/B TYR 201 CE2 /A LYS 1527 CE 4.661
/B VAL 202 N /A LYS 1527 NZ 4.662
/B TYR 150 CD1 /A LYS 848 N 4.663
/B ILE 220 CD1 /A ARG 1514 NE 4.666
/B TYR 150 CG /A ASN 851 CG 4.669
/B TYR 201 CG /A PHE 1531 CE2 4.672
/B ILE 222 CG2 /A MET 1510 SD 4.672
/B ARG 51 NE /A MET 1332 CB 4.674
/B GLU 155 OE2 /A ARG 854 CZ 4.677
/B VAL 46 CA /A ARG 895 NH1 4.679
/B PRO 206 O /A SER 1526 OG 4.681
/B THR 124 OG1 /A ASN 851 ND2 4.683
/B PRO 205 CG /A PHE 1821 CD2 4.683
/B TYR 218 CB /A PHE 1419 CB 4.684
/B PRO 217 CB /A PHE 1419 C 4.688
/B TYR 201 CG /A LYS 1527 CE 4.689
/B ASN 223 CB /A MET 1510 CG 4.691
/B TYR 201 CA /A GLU 1876 CD 4.694
/B SER 50 OG /A TYR 899 CE1 4.697
/B PRO 206 CB /A SER 1526 OG 4.702
/B VAL 151 CA /A ASN 851 CG 4.703
/B PRO 205 CG /A PHE 1821 CE2 4.703
/B TYR 218 CE1 /A ARG 1516 CB 4.707
/B TYR 201 OH /A ARG 1441 CZ 4.707
/B ILE 220 CG1 /A PHE 1419 CG 4.709
/B CYS 211 SG /A ASP 1817 C 4.711
/B ASN 223 CG /A ASP 1509 CB 4.713
/B PRO 209 CD /A GLN 1530 NE2 4.714
/B GLU 210 OE2 /A PRO 1820 CG 4.714
/B MET 204 C /A LYS 1527 CG 4.715
/B ARG 51 CD /A MET 1332 CB 4.716
/B PHE 219 CD2 /A MET 1342 SD 4.717
/B ILE 152 N /A ASN 851 CB 4.717
/B VAL 200 CG1 /A ALA 1873 N 4.720
/B VAL 200 CG1 /A PHE 1531 CD2 4.721
/B GLU 155 OE1 /A ASN 852 O 4.723
/B VAL 200 CG2 /A LEU 1872 CD2 4.723
/B LYS 213 CG /A ASP 1817 OD2 4.724
/B PRO 217 O /A MET 1342 SD 4.725
/B ILE 152 CD1 /A ASN 851 C 4.725
/B TYR 150 CE1 /A ILE 847 CG1 4.725
/B TYR 201 CE1 /A LYS 1527 CD 4.727
/B ILE 222 CA /A MET 1510 CE 4.728
/B PRO 217 C /A MET 1342 CE 4.728
/B TYR 201 CE2 /A GLN 1528 CB 4.728
/B ILE 152 CD1 /A ILE 896 CG1 4.728
/B TYR 150 CD1 /A ILE 847 O 4.729
/B ILE 152 CA /A ASN 851 CA 4.729
/B PHE 219 CG /A MET 1342 CG 4.729
/B TYR 201 CE1 /A ARG 1441 CZ 4.730
/B VAL 200 CG2 /A LEU 1872 CG 4.730
/B VAL 200 C /A PHE 1531 CD2 4.732
/B TYR 218 CE1 /A ALA 1517 N 4.732
/B LEU 47 CD1 /A ILE 896 N 4.734
/B PRO 205 CG /A GLN 1530 OE1 4.735
/B VAL 151 O /A ASN 851 C 4.742
/B TYR 218 CZ /A ARG 1516 NE 4.745
/B TYR 150 CB /A ASN 851 CB 4.747
/B MET 204 SD /A PHE 1531 CA 4.749
/B VAL 46 CG1 /A ARG 895 NH1 4.749
/B LEU 47 CG /A ALA 892 O 4.750
/B ILE 220 CD1 /A PHE 1419 CZ 4.750
/B VAL 200 CG1 /A PHE 1531 CE2 4.751
/B MET 204 CG /A PHE 1531 CD2 4.755
/B GLN 216 O /A PHE 1520 O 4.756
/B PRO 205 CD /A PHE 1821 CD2 4.758
/B TYR 201 CA /A PHE 1531 CG 4.763
/B TYR 201 CZ /A GLN 1528 CD 4.765
/B TYR 218 CD2 /A ALA 1517 N 4.765
/B PRO 221 O /A MET 1510 CE 4.765
/B SER 50 N /A TYR 899 CZ 4.765
/B GLY 199 O /A GLU 1876 CD 4.766
/B LYS 213 NZ /A ASP 1817 CB 4.767
/B ILE 152 CB /A ASN 851 ND2 4.767
/B ILE 152 CB /A ASN 851 CB 4.768
/B ILE 152 CD1 /A ASN 851 CB 4.775
/B VAL 45 CB /A GLU 888 C 4.776
/B TYR 201 CD2 /A PHE 1531 CZ 4.777
/B VAL 200 C /A PHE 1531 CE2 4.779
/B TYR 218 CB /A PHE 1419 C 4.780
/B MET 204 SD /A GLN 1530 C 4.784
/B SER 50 N /A ASP 1329 OD1 4.786
/B ASN 223 ND2 /A ASN 1513 ND2 4.786
/B TYR 218 C /A PHE 1419 CA 4.788
/B GLU 155 CG /A ARG 857 NH2 4.789
/B LYS 213 CE /A PHE 1520 CE1 4.789
/B TYR 201 OH /A LYS 1527 CE 4.789
/B MET 204 CB /A GLN 1530 OE1 4.790
/B MET 204 CE /A LEU 1534 CG 4.791
/B GLY 199 N /A GLU 1876 OE2 4.792
/B THR 207 N /A GLN 1530 OE1 4.792
/B ILE 220 N /A ASP 1415 O 4.794
/B PRO 217 N /A PHE 1419 O 4.795
/B PHE 219 CE2 /A VAL 1341 CG2 4.795
/B ARG 51 CG /A MET 1332 SD 4.796
/B PRO 221 CD /A ASN 1513 CG 4.796
/B LEU 47 CD1 /A ARG 895 CG 4.796
/B ALA 121 CB /A ASN 852 ND2 4.797
/B TYR 150 CE1 /A ILE 847 CA 4.797
/B TYR 201 CD1 /A ARG 1441 NH1 4.801
/B GLU 208 N /A SER 1526 OG 4.803
/B LEU 47 CG /A ASN 851 ND2 4.803
/B VAL 57 CG2 /A PRO 1489 CD 4.806
/B MET 204 CA /A LYS 1527 CG 4.809
/B ASN 113 ND2 /A PRO 1489 O 4.809
/B VAL 151 O /A ASN 851 OD1 4.809
/B CYS 211 CB /A ASP 1817 C 4.813
/B ILE 220 CG2 /A ARG 1514 NE 4.816
/B PRO 205 N /A GLN 1530 OE1 4.820
/B TYR 150 CD1 /A ASN 851 CG 4.820
/B TYR 201 CD2 /A LYS 1527 CE 4.823
/B TYR 201 CZ /A GLN 1528 CA 4.824
/B VAL 200 N /A GLU 1876 CG 4.824
/B MET 204 CB /A LYS 1527 CB 4.825
/B GLU 155 OE1 /A ARG 857 CZ 4.826
/B PHE 219 CE2 /A VAL 1341 CG1 4.826
/B TYR 201 CE2 /A LYS 1527 CD 4.828
/B ILE 220 CG2 /A MET 1510 CG 4.832
/B SER 49 CB /A THR 1328 CB 4.834
/B LEU 47 CD2 /A ALA 892 O 4.836
/B ILE 222 CG1 /A MET 1510 CE 4.837
/B GLY 199 N /A GLU 1876 CD 4.837
/B LYS 213 NZ /A GLU 1813 OE2 4.841
/B ILE 152 CD1 /A ASN 851 ND2 4.841
/B TYR 150 OH /A SER 844 C 4.843
/B VAL 200 CG2 /A ALA 1873 CB 4.845
/B ILE 220 CG1 /A ASP 1415 CG 4.845
/B ILE 220 CG2 /A MET 1510 CA 4.846
/B TYR 218 O /A ALA 1517 CB 4.847
/B THR 207 O /A GLN 1530 OE1 4.851
/B PHE 219 N /A MET 1342 SD 4.852
/B VAL 45 CG1 /A GLU 888 O 4.852
/B SER 50 CB /A ASP 1329 OD1 4.852
/B ILE 152 CD1 /A ARG 857 CZ 4.852
/B ILE 220 CB /A ASN 1513 CB 4.853
/B ILE 152 CG2 /A ASN 852 N 4.856
/B THR 207 O /A SER 1526 CA 4.860
/B TYR 218 CA /A ALA 1517 CB 4.860
/B THR 207 OG1 /A PHE 1821 CD2 4.863
/B LYS 213 NZ /A PHE 1520 CE2 4.863
/B TYR 201 CE1 /A GLN 1528 OE1 4.864
/B LEU 47 O /A ARG 895 NE 4.867
/B CYS 211 CA /A ASP 1817 O 4.868
/B VAL 200 CG2 /A GLU 1876 CD 4.868
/B MET 204 CG /A PHE 1821 CZ 4.869
/B GLU 208 CA /A SER 1526 OG 4.873
/B TYR 201 CE2 /A ARG 1441 CD 4.873
/B ILE 220 CG2 /A ARG 1514 N 4.874
/B ILE 220 CB /A ASP 1415 OD2 4.880
/B TYR 201 CZ /A LYS 1527 NZ 4.880
/B THR 207 OG1 /A PHE 1821 CB 4.881
/B MET 204 CB /A LYS 1527 CA 4.881
/B ASN 223 ND2 /A ASP 1509 CA 4.881
/B VAL 45 CG1 /A ALA 892 CA 4.885
/B TYR 218 CB /A ALA 1517 N 4.886
/B GLU 208 CA /A SER 1526 CB 4.887
/B TYR 218 CE1 /A ALA 1517 CB 4.888
/B VAL 151 C /A ASN 852 OD1 4.890
/B TYR 201 CG /A PHE 1531 CB 4.891
/B TYR 201 CG /A PHE 1531 CD1 4.892
/B VAL 200 CG1 /A ASN 1869 O 4.894
/B SER 50 CB /A LYS 903 CD 4.895
/B ILE 220 CD1 /A ASP 1415 OD2 4.897
/B LEU 47 CG /A ARG 895 CZ 4.898
/B GLU 210 N /A PRO 1820 CG 4.899
/B ARG 51 CB /A MET 1332 SD 4.899
/B TYR 201 CD2 /A ARG 1441 CD 4.901
/B TYR 150 CZ /A SER 844 OG 4.901
/B VAL 57 CG2 /A PRO 1489 N 4.902
/B TYR 218 CB /A ALA 1517 O 4.904
/B TYR 218 CB /A ALA 1517 C 4.905
/B ILE 220 CD1 /A ARG 1514 C 4.907
/B VAL 45 CG2 /A ALA 892 CB 4.907
/B ILE 220 CG1 /A PHE 1419 CE2 4.908
/B TYR 201 OH /A GLN 1528 CG 4.908
/B VAL 45 CB /A GLU 888 CB 4.908
/B GLY 199 CA /A GLU 1876 CG 4.908
/B ILE 222 C /A MET 1510 SD 4.909
/B ARG 51 CG /A MET 1332 CG 4.909
/B TYR 218 CE1 /A ALA 1517 CA 4.910
/B ALA 44 CB /A LYS 885 CE 4.911
/B PHE 219 CA /A MET 1342 SD 4.913
/B CYS 211 CB /A ASP 1817 CB 4.914
/B ILE 152 CG2 /A ASN 851 OD1 4.914
/B LEU 47 CG /A ARG 895 NE 4.916
/B PRO 209 CB /A ASP 1817 O 4.916
/B MET 204 CG /A LYS 1527 CE 4.918
/B VAL 151 N /A ASN 851 OD1 4.919
/B TYR 150 CZ /A SER 844 O 4.919
/B LEU 47 CD2 /A ILE 896 CG2 4.920
/B TYR 201 CE2 /A PHE 1531 CD2 4.921
/B LEU 47 CD1 /A ASN 851 OD1 4.922
/B ARG 51 CA /A MET 1332 CE 4.924
/B VAL 200 CG2 /A ASN 1869 O 4.925
/B VAL 200 CB /A LEU 1872 C 4.925
/B LYS 213 CE /A PHE 1520 CD1 4.926
/B TYR 218 CA /A PHE 1419 CB 4.926
/B ALA 121 O /A ASN 852 OD1 4.926
/B MET 204 CG /A PHE 1821 CE2 4.927
/B VAL 200 CB /A GLU 1876 OE1 4.928
/B THR 124 OG1 /A ASN 852 OD1 4.931
/B LEU 47 CG /A ARG 895 CD 4.935
/B VAL 45 CG2 /A MET 889 CB 4.937
/B VAL 200 CB /A PHE 1531 CD2 4.937
/B VAL 151 O /A ASN 852 CG 4.937
/B LEU 47 CG /A ASN 851 CG 4.938
/B TYR 218 N /A PHE 1419 CB 4.939
/B PRO 209 CB /A GLN 1530 NE2 4.940
/B LEU 47 CD1 /A ARG 895 NE 4.940
/B TYR 201 CG /A GLU 1876 OE1 4.942
/B MET 204 SD /A PHE 1531 CB 4.943
/B LYS 213 NZ /A PHE 1520 CG 4.943
/B TYR 150 CD1 /A ILE 847 CA 4.944
/B PRO 209 N /A GLN 1530 NE2 4.944
/B TYR 150 CD2 /A ILE 847 CG1 4.945
/B MET 204 SD /A LYS 1527 O 4.946
/B ILE 220 CB /A ASP 1415 O 4.948
/B PHE 215 CA /A PHE 1520 O 4.950
/B TYR 201 CD2 /A LYS 1527 CG 4.951
/B VAL 200 CG2 /A LEU 1872 CD1 4.951
/B ILE 222 CA /A MET 1510 CG 4.951
/B TYR 218 CE2 /A ALA 1517 CA 4.952
/B MET 204 CG /A PHE 1531 N 4.953
/B PRO 209 CB /A SER 1526 CB 4.953
/B GLU 155 OE2 /A ARG 854 C 4.954
/B TYR 201 CZ /A GLN 1528 N 4.955
/B TYR 201 CE1 /A ARG 1441 NH2 4.959
/B GLU 155 CD /A ARG 854 C 4.961
/B PRO 221 O /A ASN 1513 ND2 4.963
/B TYR 201 CG /A ARG 1441 NH1 4.964
/B MET 204 CG /A PHE 1531 CA 4.965
/B ILE 220 CG1 /A ASP 1415 O 4.965
/B TYR 201 C /A GLU 1876 OE1 4.970
/B LEU 47 CD1 /A ILE 896 CB 4.972
/B ASP 153 O /A ASN 851 O 4.972
/B PHE 219 CB /A MET 1342 CE 4.975
/B ILE 220 CD1 /A ASP 1415 O 4.975
/B PHE 219 N /A PHE 1419 C 4.975
/B TYR 218 CE2 /A PHE 1520 CB 4.978
/B ILE 220 CG2 /A ASN 1513 ND2 4.979
/B PRO 206 CA /A LYS 1527 CB 4.980
/B ILE 222 CG2 /A MET 1510 CE 4.982
/B ASN 223 ND2 /A ASP 1509 C 4.982
/B CYS 211 CB /A ASP 1817 CA 4.984
/B SER 55 C /A PHE 1324 CZ 4.986
/B VAL 151 O /A ASN 851 CA 4.986
/B ARG 51 NH1 /A MET 1332 C 4.989
/B MET 204 C /A LYS 1527 CD 4.989
/B ARG 51 O /A MET 1332 CE 4.991
/B TYR 201 CB /A PHE 1531 CD1 4.992
/B LEU 47 CG /A ARG 895 NH1 4.993
/B PHE 219 CE2 /A MET 1342 CG 4.997
/B GLU 210 CB /A PRO 1820 CG 4.997
/B TYR 150 CD1 /A LYS 848 CA 4.998
/B TYR 201 OH /A LYS 1527 C 4.998
/B PRO 217 C /A MET 1342 SD 4.999
791 distances
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 4 models selected
> select subtract #1
2 models selected
> label @@display residues bgColor white
> ui tool show "Side View"
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> transparency 80 ~sel
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> select /A
10900 atoms, 10975 bonds, 144 pseudobonds, 1348 residues, 2 models selected
> transparency 50 ~sel
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 4 models selected
> select subtract #1
2 models selected
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> zone sel 15
Expected a keyword
> transparency 70 ~sel
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> zone sel 25
Expected a keyword
> transparency /A 50
> transparency /A 80
> transparency /A 85
> transparency /A ribbon 85
Missing or invalid "percent" argument: Expected a number
> transparency 95 target s
> transparency 90 target s
> clip near -10
> clip far 20
> clip near 0
> clip far 10
> clip near -100
> clip near -40
> clip near -50
> clip near -40
> clip near -10
> clip far 10
> clip far 40
> clip far 100
> clip near 10
> clip near -10
> clip near -100
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 6 models selected
> select subtract #1
2 models selected
> clip near -100
> clip near -10
> clip
> clip near -10
> clip far 20
> clip near -40
> clip near -40 clip far 40
Expected a keyword
> clip near -40 clip far 10
Expected a keyword
> clip near -40
> clip far 10
> clip
> select A
Expected an objects specifier or a keyword
> clip reset
Expected a keyword
> clip front 0
> ui tool show "Side View"
> view
> graphics silhouettes false
> graphics silhouettes true
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_0.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
Cell requested for row 1 is out of bounds for table with 6 rows! Resizing
table model.
> close #2
> close #1
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_2.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_2.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> set bgColor white
> lighting gentle
> graphics silhouettes true width 1
> surface /A
> color /A darkgrey
> color /B light salmon
> transparency 90 target s
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select sel & coil
11525 atoms, 11614 bonds, 1515 residues, 1 model selected
> delete atoms sel
> color halfbond false
> color #5e5e5eff pseudobonds
> style dashes 1
Changed 1 pseudobond dash
> size pseudobondRadius 0.02
Changed 144 pseudobond radii
> size pseudobondRadius 0.02
Changed 144 pseudobond radii
> size pseudobondRadius 0.02
Changed 144 pseudobond radii
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> ui tool show Contacts
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff log true
Ignore distances between atoms separated by 4 bonds or less
Detect intra-residue distances: False
Detect intra-molecule distances: True
791 distances
atom1 atom2 distance
/B GLU 155 OE1 /A ARG 854 CB 2.355
/B LYS 213 NZ /A ASP 1817 OD2 2.415
/B GLU 155 OE1 /A ARG 854 N 2.456
/B GLU 155 OE2 /A ARG 854 CB 2.490
/B VAL 200 N /A GLU 1876 OE2 2.506
/B ILE 152 CG2 /A ASN 851 O 2.636
/B GLU 155 OE2 /A ARG 854 CD 2.642
/B TYR 218 OH /A ARG 1516 CD 2.660
/B TYR 218 N /A PHE 1419 O 2.676
/B TYR 150 CB /A ASN 851 ND2 2.729
/B GLU 155 CD /A ARG 854 CB 2.743
/B SER 50 OG /A LYS 903 NZ 2.774
/B ILE 152 CG1 /A ASN 851 OD1 2.775
/B TYR 201 O /A LYS 1527 CE 2.812
/B TYR 150 C /A ASN 851 ND2 2.889
/B TYR 150 CD1 /A ILE 847 CG2 2.898
/B GLU 155 OE1 /A ARG 854 CA 2.947
/B ILE 220 CD1 /A PHE 1419 CD2 2.964
/B ILE 53 CD1 /A MET 1332 CE 2.983
/B ARG 51 CD /A MET 1332 CE 2.991
/B LYS 213 NZ /A GLU 1813 OE1 2.997
/B VAL 151 N /A ASN 851 ND2 3.016
/B TYR 150 CE1 /A ILE 847 CG2 3.043
/B ILE 222 CD1 /A ARG 1334 NH1 3.069
/B TYR 150 CG /A ILE 847 CG2 3.071
/B MET 204 SD /A PHE 1821 CZ 3.076
/B TYR 218 O /A PHE 1419 O 3.086
/B GLU 155 OE2 /A ARG 854 CG 3.099
/B THR 207 OG1 /A GLN 1530 NE2 3.106
/B ILE 222 CD1 /A ARG 1334 CZ 3.107
/B TYR 218 O /A PHE 1419 C 3.120
/B LEU 47 CD2 /A ILE 896 CG1 3.145
/B ILE 222 CD1 /A ARG 1334 NH2 3.151
/B TYR 201 CE2 /A GLN 1528 OE1 3.170
/B PRO 205 O /A GLN 1530 OE1 3.185
/B LYS 213 CE /A ASP 1817 OD2 3.187
/B SER 50 OG /A TYR 899 OH 3.193
/B ILE 152 CD1 /A ASN 851 OD1 3.203
/B TYR 150 CA /A ASN 851 ND2 3.210
/B LEU 47 O /A ARG 895 NH2 3.228
/B VAL 200 CB /A GLU 1876 OE2 3.232
/B ILE 152 CG1 /A ASN 851 CG 3.234
/B THR 207 O /A GLN 1530 NE2 3.238
/B MET 204 SD /A PHE 1821 CE2 3.253
/B ILE 220 CD1 /A ARG 1514 CG 3.260
/B GLY 199 C /A GLU 1876 OE2 3.269
/B ILE 152 CG2 /A ARG 857 NH1 3.288
/B VAL 200 CA /A GLU 1876 OE2 3.300
/B ILE 152 CB /A ASN 851 O 3.311
/B PRO 209 CD /A SER 1526 CB 3.325
/B TYR 150 O /A ASN 851 ND2 3.326
/B GLY 199 CA /A GLU 1876 OE1 3.327
/B TYR 150 CZ /A ILE 847 CG2 3.336
/B TYR 218 O /A PHE 1419 CB 3.355
/B TYR 201 OH /A GLN 1528 OE1 3.359
/B PRO 217 C /A PHE 1419 O 3.362
/B VAL 151 C /A ASN 851 ND2 3.367
/B TYR 150 CD2 /A ILE 847 CG2 3.376
/B ILE 220 CD1 /A ASP 1415 OD1 3.380
/B MET 204 CE /A PHE 1821 CZ 3.384
/B VAL 200 N /A GLU 1876 CD 3.391
/B TYR 218 CZ /A ARG 1516 CD 3.393
/B PRO 217 CA /A PHE 1419 O 3.393
/B VAL 151 O /A ASN 851 ND2 3.401
/B GLY 199 CA /A GLU 1876 OE2 3.412
/B THR 207 O /A SER 1526 OG 3.414
/B TYR 201 O /A LYS 1527 NZ 3.420
/B ARG 51 NH1 /A MET 1332 SD 3.422
/B TYR 201 N /A GLU 1876 OE2 3.440
/B LEU 47 CD2 /A ASN 851 OD1 3.451
/B ILE 152 CG1 /A ASN 851 O 3.451
/B THR 207 O /A SER 1526 CB 3.469
/B LYS 213 NZ /A ASP 1817 CG 3.470
/B ILE 152 CA /A ASN 851 O 3.477
/B ARG 51 CB /A MET 1332 CE 3.480
/B LEU 47 CD1 /A ALA 892 O 3.488
/B TYR 218 CB /A ALA 1517 CB 3.491
/B VAL 45 CG1 /A ALA 892 CB 3.493
/B TYR 150 CE2 /A ILE 847 CG2 3.503
/B TYR 201 N /A GLU 1876 OE1 3.509
/B VAL 200 N /A GLU 1876 OE1 3.521
/B ILE 220 CD1 /A PHE 1419 CE2 3.527
/B LYS 213 CD /A ASP 1817 OD2 3.529
/B GLY 199 C /A GLU 1876 OE1 3.529
/B ASN 223 ND2 /A ASP 1509 CB 3.548
/B TYR 218 C /A PHE 1419 O 3.550
/B TYR 201 CD2 /A PHE 1531 CG 3.554
/B LEU 47 N /A ARG 895 NH1 3.556
/B TYR 218 OH /A ARG 1516 CG 3.558
/B TYR 218 CA /A PHE 1419 O 3.564
/B GLU 155 CD /A ARG 854 N 3.566
/B TYR 201 CZ /A ARG 1441 NH1 3.594
/B TYR 201 OH /A ARG 1441 NH1 3.600
/B ARG 51 CD /A MET 1332 SD 3.609
/B TYR 201 CZ /A GLN 1528 OE1 3.610
/B VAL 200 CG2 /A GLU 1876 OE2 3.624
/B SER 50 CB /A TYR 899 OH 3.630
/B TYR 201 CB /A GLU 1876 OE1 3.632
/B LYS 213 NZ /A GLU 1813 CG 3.641
/B GLY 199 CA /A GLU 1876 CD 3.644
/B SER 50 CB /A LYS 903 NZ 3.648
/B LEU 47 CB /A ARG 895 CZ 3.651
/B SER 50 OG /A ASP 1329 OD1 3.657
/B ILE 220 CD1 /A ARG 1514 CA 3.664
/B LEU 47 CD1 /A ILE 896 CG1 3.673
/B PRO 217 CB /A PHE 1419 O 3.674
/B MET 204 CB /A LYS 1527 CG 3.683
/B LYS 213 NZ /A GLU 1813 CD 3.686
/B ALA 121 CB /A ASN 852 OD1 3.688
/B MET 204 CE /A LEU 1534 CD2 3.701
/B TYR 201 CD2 /A PHE 1531 CB 3.715
/B TYR 150 CE1 /A ILE 847 CB 3.719
/B VAL 151 CA /A ASN 851 ND2 3.720
/B VAL 151 O /A ASN 852 OD1 3.726
/B TYR 218 N /A PHE 1419 C 3.726
/B VAL 202 O /A LYS 1527 NZ 3.730
/B TYR 150 CB /A ASN 851 CG 3.736
/B LEU 47 CB /A ARG 895 NH1 3.737
/B GLU 155 CD /A ARG 854 CD 3.744
/B GLU 155 OE1 /A ARG 854 CG 3.765
/B GLU 155 CD /A ARG 854 CA 3.766
/B ILE 152 N /A ASN 851 ND2 3.772
/B MET 204 O /A LYS 1527 CE 3.778
/B TYR 150 OH /A ILE 847 CD1 3.779
/B TYR 218 OH /A ARG 1516 NE 3.780
/B ILE 152 CG1 /A ASN 851 CA 3.789
/B TYR 201 N /A GLU 1876 CD 3.792
/B ILE 152 CG2 /A ASN 851 C 3.794
/B TYR 218 CZ /A ARG 1516 CG 3.795
/B GLY 199 C /A GLU 1876 CD 3.798
/B LEU 47 CD1 /A ALA 892 CB 3.798
/B TYR 218 CG /A ALA 1517 CB 3.800
/B ILE 152 CG1 /A ASN 851 ND2 3.803
/B TYR 201 CE2 /A ARG 1441 NH1 3.806
/B TYR 150 CE2 /A ILE 847 CD1 3.807
/B TYR 218 O /A PHE 1419 CA 3.811
/B TYR 150 CZ /A ILE 847 CD1 3.816
/B LEU 47 O /A ARG 895 NH1 3.816
/B LEU 47 O /A ARG 895 CZ 3.822
/B TYR 201 CD2 /A PHE 1531 CD2 3.825
/B ILE 222 CD1 /A ARG 1334 NE 3.827
/B VAL 200 CG2 /A LEU 1872 CB 3.828
/B ARG 51 CG /A MET 1332 CE 3.828
/B GLU 155 CD /A ARG 854 CG 3.831
/B VAL 57 CG2 /A PRO 1489 CB 3.832
/B LYS 213 NZ /A ASP 1817 OD1 3.834
/B TYR 150 CG /A ASN 851 ND2 3.838
/B TYR 150 OH /A SER 844 OG 3.838
/B TYR 150 CZ /A ILE 847 CB 3.851
/B THR 207 OG1 /A GLN 1530 OE1 3.856
/B TYR 150 CB /A ILE 847 CG2 3.866
/B GLU 155 OE2 /A ARG 854 CA 3.866
/B PRO 209 CG /A SER 1526 CB 3.868
/B VAL 200 C /A GLU 1876 OE2 3.876
/B CYS 211 SG /A ASP 1817 CB 3.887
/B TYR 201 CB /A PHE 1531 CD2 3.893
/B TYR 218 CG /A ALA 1517 CA 3.897
/B THR 207 OG1 /A GLN 1530 CD 3.898
/B LEU 47 CB /A ARG 895 NH2 3.899
/B MET 204 CE /A PHE 1531 CA 3.901
/B TYR 201 CB /A PHE 1531 CE2 3.903
/B PRO 217 CG /A MET 1342 CE 3.903
/B ILE 220 CD1 /A PHE 1419 CG 3.905
/B CYS 211 SG /A ASP 1817 CG 3.910
/B TYR 218 CB /A ALA 1517 CA 3.914
/B ARG 51 NH2 /A PHE 1344 CE1 3.917
/B LEU 47 CG /A ILE 896 CG1 3.928
/B LYS 213 NZ /A PHE 1520 CE1 3.930
/B LEU 47 CD1 /A ALA 892 CA 3.931
/B MET 204 CB /A LYS 1527 CE 3.933
/B CYS 211 CB /A ASP 1817 O 3.937
/B ILE 53 CD1 /A MET 1332 CG 3.938
/B ILE 53 CG1 /A MET 1332 CE 3.939
/B ILE 152 CG1 /A ASN 851 CB 3.940
/B TYR 218 C /A PHE 1419 C 3.941
/B TYR 218 CD1 /A ALA 1517 CB 3.950
/B TYR 201 C /A LYS 1527 CE 3.951
/B ASN 223 ND2 /A ASP 1509 OD2 3.959
/B LYS 213 CE /A ASP 1817 CG 3.961
/B VAL 151 O /A ASN 851 CG 3.965
/B SER 49 CB /A THR 1328 CG2 3.966
/B TYR 201 CA /A PHE 1531 CD2 3.969
/B TYR 201 CD2 /A PHE 1531 CD1 3.977
/B LEU 47 CB /A ARG 895 NE 3.978
/B ILE 220 CD1 /A ARG 1514 N 3.979
/B ARG 51 NH1 /A MET 1332 CE 3.981
/B ILE 53 CD1 /A MET 1332 SD 3.991
/B SER 50 OG /A LYS 903 CE 3.997
/B MET 204 CE /A PHE 1531 CD2 4.007
/B VAL 151 C /A ASN 851 CG 4.014
/B LEU 47 CD2 /A ILE 896 CD1 4.014
/B TYR 218 CE1 /A ARG 1516 CD 4.014
/B GLU 155 OE1 /A ARG 857 NH2 4.017
/B LEU 47 CD1 /A ALA 892 C 4.018
/B ILE 220 CD1 /A ARG 1514 CB 4.020
/B CYS 211 SG /A ASP 1817 OD1 4.024
/B GLU 155 OE2 /A ARG 854 NE 4.032
/B ILE 152 CG1 /A ASN 851 C 4.037
/B TYR 150 CD1 /A ILE 847 CB 4.043
/B ILE 222 CG1 /A ARG 1334 NH2 4.045
/B TYR 201 N /A PHE 1531 CE2 4.046
/B VAL 202 CA /A LYS 1527 NZ 4.047
/B LEU 47 CD1 /A ILE 896 CD1 4.048
/B SER 50 CB /A TYR 904 OH 4.051
/B ARG 51 CD /A MET 1332 CG 4.058
/B PRO 221 O /A MET 1510 CG 4.058
/B ILE 152 CD1 /A ASN 851 CG 4.062
/B ARG 51 CZ /A MET 1332 SD 4.066
/B LYS 213 CE /A ASP 1817 OD1 4.075
/B PRO 205 O /A GLN 1530 CD 4.076
/B ILE 220 CD1 /A ASP 1415 CG 4.087
/B TYR 150 CD1 /A ASN 851 ND2 4.090
/B LEU 47 CA /A ARG 895 NH1 4.091
/B GLU 155 OE1 /A ARG 854 C 4.092
/B VAL 151 O /A ASN 851 CB 4.094
/B ILE 220 CG1 /A PHE 1419 CD2 4.095
/B ILE 152 N /A ASN 851 CG 4.095
/B TYR 150 OH /A SER 844 CA 4.100
/B ARG 51 NE /A MET 1332 CE 4.103
/B PRO 217 O /A MET 1342 CE 4.105
/B VAL 200 CG2 /A ALA 1873 N 4.107
/B SER 50 N /A TYR 899 OH 4.108
/B LEU 47 C /A ARG 895 NH2 4.110
/B TYR 201 N /A PHE 1531 CD2 4.112
/B ASN 223 ND2 /A ASP 1509 CG 4.113
/B GLU 155 OE2 /A ARG 854 N 4.124
/B MET 204 O /A LYS 1527 CD 4.126
/B VAL 45 CG2 /A MET 889 CG 4.127
/B ILE 152 CD1 /A ARG 857 NH1 4.128
/B TYR 218 CB /A PHE 1419 O 4.129
/B GLU 155 CD /A ARG 857 NH2 4.129
/B GLU 155 OE1 /A ARG 854 CD 4.140
/B TYR 150 C /A ASN 851 CG 4.141
/B PRO 221 CD /A ASN 1513 ND2 4.142
/B PRO 205 O /A GLN 1530 NE2 4.147
/B TYR 201 CE2 /A PHE 1531 CB 4.147
/B TYR 201 CE1 /A ARG 1441 NH1 4.148
/B VAL 200 CG1 /A ALA 1873 CB 4.149
/B TYR 201 CE2 /A GLN 1528 CA 4.149
/B TYR 201 CE2 /A LYS 1527 O 4.149
/B ILE 152 CD1 /A ASN 851 O 4.149
/B ARG 51 NE /A MET 1332 SD 4.151
/B PRO 221 CG /A ASN 1513 ND2 4.155
/B TYR 150 OH /A MET 889 CE 4.160
/B TYR 201 O /A LYS 1527 CD 4.160
/B VAL 200 CG2 /A LEU 1872 C 4.167
/B MET 204 O /A LYS 1527 CG 4.169
/B TYR 218 CE2 /A ARG 1516 CD 4.171
/B VAL 202 O /A LYS 1527 CE 4.171
/B TYR 201 CA /A GLU 1876 OE1 4.171
/B PRO 209 CD /A SER 1526 OG 4.174
/B MET 204 CE /A PHE 1821 CE2 4.174
/B ILE 152 CB /A ASN 851 OD1 4.179
/B ILE 220 CG2 /A ASN 1513 CB 4.183
/B TYR 201 CE1 /A LYS 1527 CE 4.183
/B LEU 47 CG /A ASN 851 OD1 4.191
/B TYR 150 CE1 /A LYS 848 CG 4.192
/B ILE 220 CD1 /A ALA 1517 CB 4.193
/B GLU 155 OE2 /A ARG 857 NH2 4.194
/B ILE 220 CD1 /A PHE 1419 CB 4.196
/B TYR 150 OH /A ILE 847 CG2 4.197
/B THR 207 C /A SER 1526 OG 4.202
/B TYR 218 OH /A ARG 1516 NH1 4.202
/B MET 204 SD /A PHE 1821 CE1 4.203
/B TYR 201 CD2 /A GLN 1528 OE1 4.203
/B TYR 150 CB /A ASN 851 OD1 4.209
/B TYR 218 CE2 /A ARG 1516 CG 4.213
/B LYS 213 CD /A PHE 1520 CD1 4.213
/B PHE 219 CD2 /A MET 1342 CG 4.215
/B PRO 206 CA /A SER 1526 OG 4.216
/B VAL 202 C /A LYS 1527 NZ 4.217
/B TYR 201 CA /A PHE 1531 CE2 4.223
/B GLU 155 CG /A ARG 854 CB 4.224
/B LEU 47 N /A ARG 895 CZ 4.225
/B GLU 155 OE1 /A GLU 855 N 4.228
/B MET 204 CE /A PHE 1821 CE1 4.230
/B LYS 213 CE /A GLU 1813 OE1 4.232
/B ILE 152 CG2 /A ARG 857 CZ 4.232
/B MET 204 CE /A PHE 1531 N 4.234
/B THR 207 C /A GLN 1530 NE2 4.235
/B ILE 152 CB /A ASN 851 C 4.235
/B LYS 213 NZ /A PHE 1520 CZ 4.236
/B MET 204 CE /A PHE 1531 CB 4.236
/B VAL 151 N /A ASN 851 CG 4.237
/B TYR 150 OH /A ILE 847 CB 4.241
/B THR 207 CB /A GLN 1530 NE2 4.241
/B PRO 217 CB /A MET 1342 CE 4.244
/B TYR 218 CD1 /A ALA 1517 CA 4.248
/B ARG 51 NH2 /A TRP 1333 CD1 4.249
/B CYS 211 SG /A ASP 1817 O 4.253
/B ILE 220 CD1 /A ASN 1513 O 4.255
/B LYS 213 CD /A ASP 1817 CG 4.255
/B ILE 152 CA /A ASN 851 C 4.256
/B GLY 199 N /A GLU 1876 OE1 4.258
/B PRO 206 C /A SER 1526 OG 4.262
/B LEU 47 CD2 /A ILE 896 CB 4.278
/B TYR 201 CB /A GLU 1876 CD 4.280
/B VAL 200 CA /A GLU 1876 CD 4.282
/B ILE 220 CD1 /A ASN 1513 C 4.283
/B GLY 199 O /A GLU 1876 OE1 4.286
/B VAL 45 CB /A ALA 892 CB 4.295
/B SER 50 OG /A ASP 1329 OD2 4.295
/B TYR 218 CD2 /A ALA 1517 CA 4.296
/B ILE 152 CD1 /A ASN 851 CA 4.300
/B TYR 150 CE2 /A ILE 847 CB 4.301
/B SER 55 CB /A PHE 1324 CZ 4.301
/B TYR 150 OH /A SER 844 CB 4.301
/B ILE 220 CG1 /A ASN 1513 O 4.308
/B THR 207 CG2 /A ARG 1824 NH1 4.317
/B ALA 121 CB /A ASN 852 CG 4.321
/B LYS 213 NZ /A PHE 1520 CD1 4.321
/B TYR 218 CD1 /A ASN 1513 O 4.321
/B TYR 201 O /A LYS 1527 CG 4.322
/B GLY 199 O /A GLU 1876 OE2 4.323
/B SER 55 O /A PHE 1324 CZ 4.323
/B TYR 201 CE2 /A PHE 1531 CG 4.324
/B TYR 218 CA /A PHE 1419 C 4.326
/B TYR 201 OH /A GLN 1528 CD 4.329
/B LEU 47 CA /A ARG 895 CZ 4.332
/B TYR 218 CE1 /A ARG 1516 CG 4.334
/B TYR 201 CZ /A LYS 1527 CE 4.339
/B VAL 57 CG2 /A PRO 1489 CA 4.340
/B ALA 44 CB /A GLU 888 CB 4.340
/B LEU 47 CD2 /A ILE 896 CA 4.341
/B ILE 152 CA /A ASN 851 CG 4.341
/B PRO 205 CD /A PHE 1821 CE2 4.342
/B ALA 44 CB /A GLU 888 CG 4.342
/B VAL 200 CG1 /A LEU 1534 CD2 4.344
/B ASN 223 N /A MET 1510 SD 4.344
/B TYR 201 OH /A GLN 1528 CB 4.347
/B LEU 47 CB /A ARG 895 CD 4.348
/B TYR 201 CE2 /A GLN 1528 CD 4.349
/B ILE 222 CG1 /A ARG 1334 CZ 4.351
/B ARG 51 NH2 /A PHE 1344 CZ 4.353
/B THR 207 N /A GLN 1530 NE2 4.356
/B ILE 152 CB /A ASN 851 CG 4.359
/B TYR 201 C /A LYS 1527 NZ 4.361
/B PHE 219 CE2 /A VAL 1341 CB 4.363
/B TYR 201 CD1 /A LYS 1527 CE 4.365
/B TYR 201 CE1 /A LYS 1527 NZ 4.366
/B CYS 211 SG /A ASP 1817 CA 4.366
/B CYS 211 SG /A ASP 1817 OD2 4.370
/B GLU 155 OE2 /A ARG 854 NH1 4.371
/B ASN 223 N /A MET 1510 CG 4.372
/B TYR 218 OH /A ARG 1516 CZ 4.372
/B VAL 200 CB /A GLU 1876 CD 4.373
/B TYR 201 CG /A PHE 1531 CD2 4.375
/B LYS 213 CD /A PHE 1520 CE1 4.376
/B SER 50 OG /A TYR 899 CZ 4.379
/B SER 50 CB /A TYR 899 CE1 4.380
/B ARG 51 NH2 /A TRP 1333 NE1 4.383
/B TYR 150 O /A ASN 851 CG 4.383
/B ASP 153 N /A ASN 851 O 4.383
/B VAL 45 CG2 /A MET 889 N 4.389
/B PRO 205 C /A GLN 1530 OE1 4.389
/B ILE 152 N /A ASN 851 OD1 4.393
/B MET 204 CG /A LYS 1527 O 4.396
/B LEU 47 CA /A ARG 895 NH2 4.396
/B MET 204 SD /A GLN 1530 OE1 4.396
/B ILE 152 CG2 /A ARG 857 NH2 4.397
/B ILE 152 C /A ASN 851 O 4.399
/B VAL 200 CB /A ALA 1873 CA 4.403
/B ILE 152 CD1 /A ILE 896 CG2 4.405
/B MET 204 SD /A GLN 1530 CB 4.408
/B ILE 220 CG1 /A ASN 1513 C 4.411
/B MET 204 CB /A LYS 1527 CD 4.413
/B PRO 217 CB /A MET 1342 SD 4.416
/B ILE 220 CG2 /A ARG 1514 CG 4.416
/B SER 50 OG /A ASP 1329 CG 4.417
/B TYR 150 CZ /A ILE 847 CG1 4.419
/B VAL 202 CA /A LYS 1527 CE 4.427
/B PHE 219 CB /A MET 1342 SD 4.428
/B ILE 152 CA /A ASN 851 ND2 4.428
/B LEU 47 C /A ARG 895 NH1 4.431
/B THR 207 O /A GLN 1530 CD 4.432
/B VAL 200 CG2 /A ALA 1873 CA 4.433
/B TYR 218 CE1 /A ASN 1513 O 4.433
/B PRO 217 O /A PHE 1419 O 4.434
/B ILE 220 CG1 /A ALA 1517 CB 4.437
/B ILE 152 CG2 /A ASN 851 CA 4.437
/B VAL 45 CG2 /A GLU 888 C 4.438
/B ILE 220 CG2 /A ASP 1415 OD1 4.439
/B TYR 201 CD2 /A PHE 1531 CE2 4.441
/B TYR 201 CE2 /A GLN 1528 N 4.442
/B ILE 220 CB /A ASP 1415 OD1 4.442
/B ILE 220 CG2 /A MET 1510 O 4.443
/B TYR 218 O /A ASP 1415 O 4.443
/B VAL 200 C /A GLU 1876 OE1 4.444
/B ARG 51 NH1 /A MET 1332 CG 4.447
/B LEU 47 CG /A ILE 896 CD1 4.448
/B MET 204 O /A LYS 1527 NZ 4.450
/B LEU 47 CD2 /A ASN 851 CG 4.451
/B VAL 200 CG2 /A LEU 1872 O 4.451
/B ILE 220 CB /A ASP 1415 CG 4.451
/B TYR 201 CE2 /A LYS 1527 CG 4.452
/B TYR 218 CD1 /A ALA 1517 N 4.452
/B VAL 45 CB /A GLU 888 O 4.454
/B ILE 220 CD1 /A ASP 1415 CA 4.454
/B TYR 201 CE2 /A LYS 1527 C 4.456
/B TYR 218 C /A PHE 1419 CB 4.457
/B ILE 220 CG1 /A ASP 1415 OD1 4.459
/B TYR 150 CG /A ILE 847 CB 4.459
/B ILE 220 CG2 /A ASP 1415 CG 4.461
/B MET 204 SD /A PHE 1821 CD2 4.461
/B PRO 209 CD /A SER 1526 CA 4.465
/B ARG 51 CZ /A MET 1332 CE 4.466
/B TYR 201 OH /A GLN 1528 CA 4.466
/B TYR 218 CG /A ALA 1517 N 4.467
/B TYR 150 CA /A ASN 851 CG 4.467
/B VAL 200 CA /A GLU 1876 OE1 4.469
/B MET 204 CE /A GLN 1530 O 4.469
/B TYR 201 CB /A PHE 1531 CG 4.470
/B VAL 202 C /A LYS 1527 CE 4.476
/B ILE 222 CA /A MET 1510 SD 4.478
/B VAL 45 CG2 /A GLU 888 O 4.481
/B VAL 45 CG2 /A MET 889 CA 4.483
/B TYR 201 CZ /A ARG 1441 CZ 4.483
/B ILE 220 CG1 /A ARG 1514 CG 4.484
/B TYR 201 CB /A PHE 1531 CZ 4.485
/B ARG 51 NE /A MET 1332 CG 4.488
/B LEU 47 C /A ARG 895 CZ 4.489
/B TYR 201 CG /A PHE 1531 CG 4.489
/B TYR 201 CZ /A LYS 1527 CD 4.491
/B ALA 121 CA /A ASN 852 OD1 4.499
/B PRO 217 C /A PHE 1419 C 4.500
/B MET 204 CE /A GLN 1530 C 4.502
/B SER 50 CB /A TYR 899 CZ 4.503
/B TYR 150 CE1 /A LYS 848 N 4.503
/B TYR 201 CD2 /A ARG 1441 NH1 4.506
/B THR 207 C /A SER 1526 CB 4.506
/B ILE 220 CG1 /A ARG 1514 N 4.511
/B SER 49 OG /A THR 1328 CG2 4.512
/B ILE 222 CG1 /A ARG 1334 NH1 4.512
/B ILE 220 CD1 /A ASP 1415 CB 4.513
/B LEU 47 CD1 /A ARG 895 CD 4.514
/B ILE 152 CB /A ARG 857 NH1 4.514
/B ARG 51 NH1 /A MET 1332 CB 4.516
/B THR 207 CA /A GLN 1530 NE2 4.516
/B VAL 200 CG1 /A ALA 1873 CA 4.517
/B VAL 45 CG2 /A GLU 888 CB 4.517
/B LEU 47 N /A ARG 895 NH2 4.520
/B TYR 150 CE1 /A SER 844 O 4.521
/B PRO 209 N /A SER 1526 CB 4.521
/B ILE 152 CG1 /A ARG 857 NH1 4.525
/B ILE 152 CB /A ASN 851 CA 4.528
/B ILE 220 CG1 /A PHE 1419 CB 4.529
/B TYR 150 CD2 /A ILE 847 CD1 4.529
/B TYR 150 OH /A SER 844 O 4.529
/B SER 50 CA /A TYR 899 OH 4.530
/B MET 204 CB /A LYS 1527 O 4.530
/B GLN 214 O /A PHE 1520 O 4.532
/B THR 207 N /A SER 1526 OG 4.535
/B SER 49 CB /A ASP 1329 OD1 4.535
/B TYR 201 CZ /A LYS 1527 CG 4.542
/B TYR 201 OH /A LYS 1527 CD 4.542
/B VAL 200 CB /A ALA 1873 CB 4.542
/B TYR 150 O /A ASN 851 OD1 4.542
/B VAL 151 C /A ASN 851 CB 4.543
/B ALA 44 CB /A LYS 885 CG 4.546
/B ILE 220 CG2 /A ASP 1415 OD2 4.547
/B TYR 150 CE2 /A ILE 847 CG1 4.547
/B TYR 150 CD1 /A ILE 847 C 4.547
/B ILE 220 CD1 /A ARG 1514 CD 4.548
/B SER 50 CB /A LYS 903 CE 4.551
/B VAL 200 C /A GLU 1876 CD 4.554
/B SER 55 O /A PHE 1324 CE1 4.555
/B ILE 220 CB /A ASP 1415 CB 4.555
/B PRO 209 CG /A SER 1526 CA 4.556
/B TYR 150 CE1 /A ILE 847 CD1 4.559
/B TYR 201 OH /A GLN 1528 N 4.560
/B TYR 201 CD2 /A LYS 1527 O 4.565
/B ILE 152 CA /A ASN 851 OD1 4.567
/B TYR 218 OH /A ARG 1516 CB 4.568
/B VAL 200 CB /A ALA 1873 N 4.568
/B ILE 152 N /A ASN 851 O 4.569
/B LEU 47 CD2 /A ILE 896 N 4.569
/B ILE 222 CD1 /A ARG 1334 CD 4.572
/B TYR 201 CD1 /A LYS 1527 NZ 4.573
/B TYR 201 CD2 /A PHE 1531 CE1 4.573
/B TYR 201 CE2 /A PHE 1531 CD1 4.573
/B MET 204 SD /A PHE 1531 N 4.578
/B TYR 150 N /A ASN 851 ND2 4.578
/B ARG 51 CZ /A MET 1332 CB 4.578
/B MET 204 CE /A LEU 1534 CB 4.580
/B MET 204 CG /A LYS 1527 CG 4.580
/B TYR 150 CD2 /A ILE 847 CB 4.582
/B ILE 220 CG1 /A ASN 1513 CB 4.582
/B TYR 150 CE1 /A LYS 848 CE 4.584
/B MET 204 CG /A PHE 1531 CB 4.590
/B MET 204 N /A LYS 1527 CE 4.593
/B VAL 46 C /A ARG 895 NH1 4.593
/B PRO 217 CA /A PHE 1419 C 4.593
/B VAL 200 CB /A PHE 1531 CE2 4.595
/B ASN 223 O /A MET 1510 SD 4.600
/B ARG 51 NH1 /A MET 1332 O 4.603
/B LYS 213 CD /A ASP 1817 OD1 4.604
/B TYR 201 CB /A GLU 1876 OE2 4.605
/B MET 204 C /A LYS 1527 CE 4.606
/B VAL 57 CG2 /A PRO 1489 CG 4.608
/B PHE 219 CB /A MET 1342 CG 4.609
/B ILE 220 CG1 /A ARG 1514 CA 4.611
/B TYR 150 CE1 /A ILE 847 C 4.612
/B MET 204 CA /A LYS 1527 CE 4.612
/B TYR 218 CZ /A ARG 1516 CB 4.613
/B SER 50 OG /A TYR 904 OH 4.616
/B ILE 152 CA /A ASN 851 CB 4.617
/B VAL 151 C /A ASN 851 OD1 4.618
/B TYR 150 C /A ASN 851 OD1 4.619
/B VAL 200 CG1 /A GLU 1876 OE2 4.620
/B ILE 220 CG2 /A MET 1510 CE 4.621
/B PRO 221 O /A MET 1510 SD 4.623
/B MET 204 CE /A PHE 1531 CG 4.624
/B SER 50 OG /A LYS 903 CD 4.624
/B TYR 150 OH /A ILE 847 CG1 4.627
/B PHE 219 N /A PHE 1419 O 4.628
/B TYR 201 CA /A GLU 1876 OE2 4.630
/B VAL 151 O /A ASN 851 O 4.637
/B PRO 217 CG /A MET 1342 SD 4.640
/B GLN 216 N /A PHE 1520 O 4.642
/B GLU 155 CG /A ARG 854 N 4.644
/B VAL 202 N /A LYS 1527 CE 4.645
/B PRO 205 CD /A GLN 1530 OE1 4.645
/B SER 50 N /A TYR 899 CE1 4.645
/B ARG 51 CZ /A MET 1332 CG 4.646
/B TYR 150 CD1 /A LYS 848 CG 4.648
/B TYR 218 N /A PHE 1419 CA 4.651
/B TYR 201 OH /A LYS 1527 CG 4.652
/B TYR 201 CE2 /A ARG 1441 CZ 4.653
/B TYR 218 O /A PHE 1419 CG 4.653
/B VAL 200 CG2 /A LEU 1872 CA 4.656
/B TYR 218 CD2 /A ALA 1517 CB 4.656
/B ARG 51 NH2 /A PHE 1344 CD1 4.656
/B VAL 202 N /A GLU 1876 OE1 4.658
/B LEU 47 CD1 /A ARG 895 CB 4.659
/B LEU 47 CD2 /A ASN 851 ND2 4.660
/B TYR 201 CE2 /A LYS 1527 CE 4.661
/B VAL 202 N /A LYS 1527 NZ 4.662
/B TYR 150 CD1 /A LYS 848 N 4.663
/B ILE 220 CD1 /A ARG 1514 NE 4.666
/B TYR 150 CG /A ASN 851 CG 4.669
/B TYR 201 CG /A PHE 1531 CE2 4.672
/B ILE 222 CG2 /A MET 1510 SD 4.672
/B ARG 51 NE /A MET 1332 CB 4.674
/B GLU 155 OE2 /A ARG 854 CZ 4.677
/B VAL 46 CA /A ARG 895 NH1 4.679
/B PRO 206 O /A SER 1526 OG 4.681
/B THR 124 OG1 /A ASN 851 ND2 4.683
/B PRO 205 CG /A PHE 1821 CD2 4.683
/B TYR 218 CB /A PHE 1419 CB 4.684
/B PRO 217 CB /A PHE 1419 C 4.688
/B TYR 201 CG /A LYS 1527 CE 4.689
/B ASN 223 CB /A MET 1510 CG 4.691
/B TYR 201 CA /A GLU 1876 CD 4.694
/B SER 50 OG /A TYR 899 CE1 4.697
/B PRO 206 CB /A SER 1526 OG 4.702
/B VAL 151 CA /A ASN 851 CG 4.703
/B PRO 205 CG /A PHE 1821 CE2 4.703
/B TYR 218 CE1 /A ARG 1516 CB 4.707
/B TYR 201 OH /A ARG 1441 CZ 4.707
/B ILE 220 CG1 /A PHE 1419 CG 4.709
/B CYS 211 SG /A ASP 1817 C 4.711
/B ASN 223 CG /A ASP 1509 CB 4.713
/B PRO 209 CD /A GLN 1530 NE2 4.714
/B GLU 210 OE2 /A PRO 1820 CG 4.714
/B MET 204 C /A LYS 1527 CG 4.715
/B ARG 51 CD /A MET 1332 CB 4.716
/B PHE 219 CD2 /A MET 1342 SD 4.717
/B ILE 152 N /A ASN 851 CB 4.717
/B VAL 200 CG1 /A ALA 1873 N 4.720
/B VAL 200 CG1 /A PHE 1531 CD2 4.721
/B GLU 155 OE1 /A ASN 852 O 4.723
/B VAL 200 CG2 /A LEU 1872 CD2 4.723
/B LYS 213 CG /A ASP 1817 OD2 4.724
/B PRO 217 O /A MET 1342 SD 4.725
/B ILE 152 CD1 /A ASN 851 C 4.725
/B TYR 150 CE1 /A ILE 847 CG1 4.725
/B TYR 201 CE1 /A LYS 1527 CD 4.726
/B ILE 222 CA /A MET 1510 CE 4.728
/B PRO 217 C /A MET 1342 CE 4.728
/B TYR 201 CE2 /A GLN 1528 CB 4.728
/B ILE 152 CD1 /A ILE 896 CG1 4.728
/B TYR 150 CD1 /A ILE 847 O 4.729
/B ILE 152 CA /A ASN 851 CA 4.729
/B PHE 219 CG /A MET 1342 CG 4.729
/B TYR 201 CE1 /A ARG 1441 CZ 4.730
/B VAL 200 CG2 /A LEU 1872 CG 4.730
/B VAL 200 C /A PHE 1531 CD2 4.732
/B TYR 218 CE1 /A ALA 1517 N 4.732
/B LEU 47 CD1 /A ILE 896 N 4.734
/B PRO 205 CG /A GLN 1530 OE1 4.735
/B VAL 151 O /A ASN 851 C 4.742
/B TYR 218 CZ /A ARG 1516 NE 4.745
/B TYR 150 CB /A ASN 851 CB 4.747
/B MET 204 SD /A PHE 1531 CA 4.749
/B VAL 46 CG1 /A ARG 895 NH1 4.749
/B LEU 47 CG /A ALA 892 O 4.750
/B ILE 220 CD1 /A PHE 1419 CZ 4.750
/B VAL 200 CG1 /A PHE 1531 CE2 4.751
/B MET 204 CG /A PHE 1531 CD2 4.755
/B GLN 216 O /A PHE 1520 O 4.756
/B PRO 205 CD /A PHE 1821 CD2 4.758
/B TYR 201 CA /A PHE 1531 CG 4.763
/B TYR 201 CZ /A GLN 1528 CD 4.765
/B TYR 218 CD2 /A ALA 1517 N 4.765
/B PRO 221 O /A MET 1510 CE 4.765
/B SER 50 N /A TYR 899 CZ 4.765
/B GLY 199 O /A GLU 1876 CD 4.766
/B LYS 213 NZ /A ASP 1817 CB 4.767
/B ILE 152 CB /A ASN 851 ND2 4.767
/B ILE 152 CB /A ASN 851 CB 4.768
/B ILE 152 CD1 /A ASN 851 CB 4.775
/B VAL 45 CB /A GLU 888 C 4.776
/B TYR 201 CD2 /A PHE 1531 CZ 4.777
/B VAL 200 C /A PHE 1531 CE2 4.779
/B TYR 218 CB /A PHE 1419 C 4.780
/B MET 204 SD /A GLN 1530 C 4.784
/B SER 50 N /A ASP 1329 OD1 4.786
/B ASN 223 ND2 /A ASN 1513 ND2 4.786
/B TYR 218 C /A PHE 1419 CA 4.788
/B GLU 155 CG /A ARG 857 NH2 4.789
/B LYS 213 CE /A PHE 1520 CE1 4.789
/B TYR 201 OH /A LYS 1527 CE 4.789
/B MET 204 CB /A GLN 1530 OE1 4.790
/B MET 204 CE /A LEU 1534 CG 4.791
/B GLY 199 N /A GLU 1876 OE2 4.792
/B THR 207 N /A GLN 1530 OE1 4.792
/B ILE 220 N /A ASP 1415 O 4.794
/B PRO 217 N /A PHE 1419 O 4.795
/B PHE 219 CE2 /A VAL 1341 CG2 4.795
/B ARG 51 CG /A MET 1332 SD 4.796
/B PRO 221 CD /A ASN 1513 CG 4.796
/B LEU 47 CD1 /A ARG 895 CG 4.796
/B ALA 121 CB /A ASN 852 ND2 4.797
/B TYR 150 CE1 /A ILE 847 CA 4.797
/B TYR 201 CD1 /A ARG 1441 NH1 4.801
/B GLU 208 N /A SER 1526 OG 4.803
/B LEU 47 CG /A ASN 851 ND2 4.803
/B VAL 57 CG2 /A PRO 1489 CD 4.806
/B MET 204 CA /A LYS 1527 CG 4.809
/B ASN 113 ND2 /A PRO 1489 O 4.809
/B VAL 151 O /A ASN 851 OD1 4.809
/B CYS 211 CB /A ASP 1817 C 4.813
/B ILE 220 CG2 /A ARG 1514 NE 4.816
/B PRO 205 N /A GLN 1530 OE1 4.820
/B TYR 150 CD1 /A ASN 851 CG 4.820
/B TYR 201 CD2 /A LYS 1527 CE 4.823
/B TYR 201 CZ /A GLN 1528 CA 4.824
/B VAL 200 N /A GLU 1876 CG 4.824
/B MET 204 CB /A LYS 1527 CB 4.825
/B GLU 155 OE1 /A ARG 857 CZ 4.826
/B PHE 219 CE2 /A VAL 1341 CG1 4.826
/B TYR 201 CE2 /A LYS 1527 CD 4.828
/B ILE 220 CG2 /A MET 1510 CG 4.832
/B SER 49 CB /A THR 1328 CB 4.834
/B LEU 47 CD2 /A ALA 892 O 4.836
/B ILE 222 CG1 /A MET 1510 CE 4.837
/B GLY 199 N /A GLU 1876 CD 4.837
/B LYS 213 NZ /A GLU 1813 OE2 4.841
/B ILE 152 CD1 /A ASN 851 ND2 4.841
/B TYR 150 OH /A SER 844 C 4.843
/B VAL 200 CG2 /A ALA 1873 CB 4.845
/B ILE 220 CG1 /A ASP 1415 CG 4.845
/B ILE 220 CG2 /A MET 1510 CA 4.846
/B TYR 218 O /A ALA 1517 CB 4.847
/B THR 207 O /A GLN 1530 OE1 4.851
/B PHE 219 N /A MET 1342 SD 4.852
/B VAL 45 CG1 /A GLU 888 O 4.852
/B SER 50 CB /A ASP 1329 OD1 4.852
/B ILE 152 CD1 /A ARG 857 CZ 4.852
/B ILE 220 CB /A ASN 1513 CB 4.853
/B ILE 152 CG2 /A ASN 852 N 4.856
/B THR 207 O /A SER 1526 CA 4.860
/B TYR 218 CA /A ALA 1517 CB 4.860
/B THR 207 OG1 /A PHE 1821 CD2 4.863
/B LYS 213 NZ /A PHE 1520 CE2 4.863
/B TYR 201 CE1 /A GLN 1528 OE1 4.864
/B LEU 47 O /A ARG 895 NE 4.867
/B CYS 211 CA /A ASP 1817 O 4.868
/B VAL 200 CG2 /A GLU 1876 CD 4.868
/B MET 204 CG /A PHE 1821 CZ 4.869
/B GLU 208 CA /A SER 1526 OG 4.873
/B TYR 201 CE2 /A ARG 1441 CD 4.873
/B ILE 220 CG2 /A ARG 1514 N 4.874
/B ILE 220 CB /A ASP 1415 OD2 4.880
/B TYR 201 CZ /A LYS 1527 NZ 4.880
/B THR 207 OG1 /A PHE 1821 CB 4.881
/B MET 204 CB /A LYS 1527 CA 4.881
/B ASN 223 ND2 /A ASP 1509 CA 4.881
/B VAL 45 CG1 /A ALA 892 CA 4.885
/B TYR 218 CB /A ALA 1517 N 4.886
/B GLU 208 CA /A SER 1526 CB 4.887
/B TYR 218 CE1 /A ALA 1517 CB 4.888
/B VAL 151 C /A ASN 852 OD1 4.890
/B TYR 201 CG /A PHE 1531 CB 4.891
/B TYR 201 CG /A PHE 1531 CD1 4.892
/B VAL 200 CG1 /A ASN 1869 O 4.894
/B SER 50 CB /A LYS 903 CD 4.895
/B ILE 220 CD1 /A ASP 1415 OD2 4.897
/B LEU 47 CG /A ARG 895 CZ 4.898
/B GLU 210 N /A PRO 1820 CG 4.899
/B ARG 51 CB /A MET 1332 SD 4.899
/B TYR 201 CD2 /A ARG 1441 CD 4.901
/B TYR 150 CZ /A SER 844 OG 4.901
/B VAL 57 CG2 /A PRO 1489 N 4.902
/B TYR 218 CB /A ALA 1517 O 4.904
/B TYR 218 CB /A ALA 1517 C 4.905
/B ILE 220 CD1 /A ARG 1514 C 4.907
/B VAL 45 CG2 /A ALA 892 CB 4.907
/B ILE 220 CG1 /A PHE 1419 CE2 4.908
/B TYR 201 OH /A GLN 1528 CG 4.908
/B VAL 45 CB /A GLU 888 CB 4.908
/B GLY 199 CA /A GLU 1876 CG 4.908
/B ILE 222 C /A MET 1510 SD 4.909
/B ARG 51 CG /A MET 1332 CG 4.909
/B TYR 218 CE1 /A ALA 1517 CA 4.910
/B ALA 44 CB /A LYS 885 CE 4.911
/B PHE 219 CA /A MET 1342 SD 4.913
/B CYS 211 CB /A ASP 1817 CB 4.914
/B ILE 152 CG2 /A ASN 851 OD1 4.914
/B LEU 47 CG /A ARG 895 NE 4.916
/B PRO 209 CB /A ASP 1817 O 4.916
/B MET 204 CG /A LYS 1527 CE 4.918
/B VAL 151 N /A ASN 851 OD1 4.919
/B TYR 150 CZ /A SER 844 O 4.919
/B LEU 47 CD2 /A ILE 896 CG2 4.920
/B TYR 201 CE2 /A PHE 1531 CD2 4.921
/B LEU 47 CD1 /A ASN 851 OD1 4.922
/B ARG 51 CA /A MET 1332 CE 4.924
/B VAL 200 CG2 /A ASN 1869 O 4.925
/B VAL 200 CB /A LEU 1872 C 4.925
/B LYS 213 CE /A PHE 1520 CD1 4.926
/B TYR 218 CA /A PHE 1419 CB 4.926
/B ALA 121 O /A ASN 852 OD1 4.926
/B MET 204 CG /A PHE 1821 CE2 4.927
/B VAL 200 CB /A GLU 1876 OE1 4.928
/B THR 124 OG1 /A ASN 852 OD1 4.931
/B LEU 47 CG /A ARG 895 CD 4.935
/B VAL 45 CG2 /A MET 889 CB 4.937
/B VAL 200 CB /A PHE 1531 CD2 4.937
/B VAL 151 O /A ASN 852 CG 4.937
/B LEU 47 CG /A ASN 851 CG 4.938
/B TYR 218 N /A PHE 1419 CB 4.939
/B PRO 209 CB /A GLN 1530 NE2 4.940
/B LEU 47 CD1 /A ARG 895 NE 4.940
/B TYR 201 CG /A GLU 1876 OE1 4.942
/B MET 204 SD /A PHE 1531 CB 4.943
/B LYS 213 NZ /A PHE 1520 CG 4.943
/B TYR 150 CD1 /A ILE 847 CA 4.944
/B PRO 209 N /A GLN 1530 NE2 4.944
/B TYR 150 CD2 /A ILE 847 CG1 4.945
/B MET 204 SD /A LYS 1527 O 4.946
/B ILE 220 CB /A ASP 1415 O 4.948
/B PHE 215 CA /A PHE 1520 O 4.950
/B TYR 201 CD2 /A LYS 1527 CG 4.951
/B VAL 200 CG2 /A LEU 1872 CD1 4.951
/B ILE 222 CA /A MET 1510 CG 4.951
/B TYR 218 CE2 /A ALA 1517 CA 4.952
/B MET 204 CG /A PHE 1531 N 4.953
/B PRO 209 CB /A SER 1526 CB 4.953
/B GLU 155 OE2 /A ARG 854 C 4.954
/B TYR 201 CZ /A GLN 1528 N 4.955
/B TYR 201 CE1 /A ARG 1441 NH2 4.959
/B GLU 155 CD /A ARG 854 C 4.961
/B PRO 221 O /A ASN 1513 ND2 4.963
/B TYR 201 CG /A ARG 1441 NH1 4.964
/B MET 204 CG /A PHE 1531 CA 4.965
/B ILE 220 CG1 /A ASP 1415 O 4.965
/B TYR 201 C /A GLU 1876 OE1 4.970
/B LEU 47 CD1 /A ILE 896 CB 4.972
/B ASP 153 O /A ASN 851 O 4.972
/B PHE 219 CB /A MET 1342 CE 4.975
/B ILE 220 CD1 /A ASP 1415 O 4.975
/B PHE 219 N /A PHE 1419 C 4.975
/B TYR 218 CE2 /A PHE 1520 CB 4.978
/B ILE 220 CG2 /A ASN 1513 ND2 4.979
/B PRO 206 CA /A LYS 1527 CB 4.980
/B ILE 222 CG2 /A MET 1510 CE 4.982
/B ASN 223 ND2 /A ASP 1509 C 4.982
/B CYS 211 CB /A ASP 1817 CA 4.984
/B SER 55 C /A PHE 1324 CZ 4.986
/B VAL 151 O /A ASN 851 CA 4.986
/B ARG 51 NH1 /A MET 1332 C 4.989
/B MET 204 C /A LYS 1527 CD 4.989
/B ARG 51 O /A MET 1332 CE 4.991
/B TYR 201 CB /A PHE 1531 CD1 4.992
/B LEU 47 CG /A ARG 895 NH1 4.993
/B PHE 219 CE2 /A MET 1342 CG 4.997
/B GLU 210 CB /A PRO 1820 CG 4.997
/B TYR 150 CD1 /A LYS 848 CA 4.998
/B TYR 201 OH /A LYS 1527 C 4.998
/B PRO 217 C /A MET 1342 SD 4.999
791 distances
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
791 distances
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
791 distances
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 3 models selected
> select subtract #1
1 model selected
> save
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/Session-06-WT_with_CTLA4.cxs"
> select add #1.3
791 pseudobonds, 1 model selected
> select subtract #1.3
Nothing selected
> select add #1.3
791 pseudobonds, 1 model selected
No visible residues selected
No visible atoms selected
> label sel residues
> label sel residues text {0.name}
> 2dlabels color black
> 2dlabels size 12
> 2dlabels bold true
> label sel atoms text {0.residue.chain_id}{0.residue.number}
> info labels
Expected a models specifier or a keyword
> label sel residues
> 2dlabels size 30
> 2dlabels color yellow
> show 2dlabels
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> listinfo sel
> view #1 clip false
> select subtract #1.3
Nothing selected
> show #1.3 target m
> ui tool show "Selection Inspector"
Alignment identifier is 1/A
Alignment identifier is 1/B
> ui tool show "Blast Protein"
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Destroying pre-existing alignment with identifier 1/A
Alignment identifier is 1/A
> select /B:2-53
406 atoms, 417 bonds, 52 residues, 1 model selected
> select /B:2-206
1573 atoms, 1611 bonds, 205 residues, 1 model selected
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 3 models selected
> select subtract #1
1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:318
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:299-318
121 atoms, 123 bonds, 1 pseudobond, 14 residues, 2 models selected
> select clear
> select /A:2492-2734
822 atoms, 818 bonds, 20 pseudobonds, 107 residues, 2 models selected
> select
> /A:205-367,417-459,1980-1997,2080-2108,2132-2134,2138-2166,2508-2549,2601-2646,2655-2849
2351 atoms, 2362 bonds, 42 pseudobonds, 292 residues, 2 models selected
> select /A:2862
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:2573-2862
1151 atoms, 1149 bonds, 27 pseudobonds, 145 residues, 2 models selected
> select clear
> select /A:44-239
1062 atoms, 1067 bonds, 11 pseudobonds, 133 residues, 2 models selected
> select clear
> select /A:317-367
196 atoms, 196 bonds, 4 pseudobonds, 24 residues, 2 models selected
> select /A:317-661
1631 atoms, 1642 bonds, 23 pseudobonds, 203 residues, 2 models selected
> select /A:676-677
17 atoms, 16 bonds, 2 residues, 1 model selected
> select /A:676-949
1714 atoms, 1732 bonds, 14 pseudobonds, 208 residues, 2 models selected
> select clear
> select /A:1313-1415
610 atoms, 615 bonds, 4 pseudobonds, 76 residues, 2 models selected
> select clear
> select /A:1410-1419
79 atoms, 79 bonds, 10 residues, 1 model selected
> select add #1.3
79 atoms, 79 bonds, 791 pseudobonds, 10 residues, 3 models selected
> select subtract #1.1
1 model selected
> select add #1.3
791 pseudobonds, 1 model selected
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 3 models selected
> select subtract #1
1 model selected
> select add #1.3
791 pseudobonds, 1 model selected
No visible atoms selected
No visible residues selected
> select subtract #1.3
Nothing selected
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> label sel attribute name
> ~label sel atoms
> hide #1.4 models
> close #1.4
> select add #1.3
1728 atoms, 1772 bonds, 791 pseudobonds, 223 residues, 2 models selected
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 3 models selected
> select subtract #1
1 model selected
> select add #1.3
791 pseudobonds, 1 model selected
> select add #1
12628 atoms, 12747 bonds, 935 pseudobonds, 1571 residues, 3 models selected
> select subtract #1
1 model selected
> select add #1.3
791 pseudobonds, 1 model selected
No visible residues selected
> ui tool show Clashes
> clashes sel restrict cross distanceOnly 4.0 ignoreHiddenModels true
No atoms match given atom specifier
> select subtract #1.3
Nothing selected
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> ui tool show Clashes
> clashes sel restrict cross distanceOnly 4.0 ignoreHiddenModels true
188 distances
> clashes sel restrict cross distanceOnly 4.9999999999999964
> ignoreHiddenModels true
791 distances
> clashes sel restrict cross distanceOnly 4.9999999999999964
> ignoreHiddenModels true
791 distances
> select contacts
Expected an objects specifier or a keyword
> select add #1
12628 atoms, 12747 bonds, 1726 pseudobonds, 1571 residues, 4 models selected
> select subtract #1
1 model selected
> hide #1.4 models
> select contacts
Expected an objects specifier or a keyword
> close #1.4
> select add #1.3
791 pseudobonds, 1 model selected
> select #1.3
791 pseudobonds, 1 model selected
> label sel text "{0.chain_id} {0.name} {0.number}"
> color sel byhetero
> contacts #1 reveal true showDist true
6982 contacts
> label height 1
> contacts #1.3 reveal true showDist true
No atoms match given atom specifier
> close #1.3.1
> close #1.3
> ui tool show Contacts
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
No atoms match given atom specifier
> select /b
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> ui tool show Contacts
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
791 distances
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
791 distances
> ui tool show Contacts
> close #1.3
> ui tool show Contacts
> contacts sel restrict both distanceOnly 4.0000000000000036
> ignoreHiddenModels true color #ff40ff
1338 distances
> contacts sel restrict cross distanceOnly 4.0000000000000036
> ignoreHiddenModels true color #ff40ff
188 distances
> select add #1
12628 atoms, 12747 bonds, 332 pseudobonds, 1571 residues, 3 models selected
> select subtract #1
1 model selected
> view clip false
> volume planes z style image imageMode "full region"
No volumes specified
> volume showOutlineBox true
No volumes specified
> ui mousemode right "mark maximum"
> ui mousemode right "mark plane"
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_0.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #1
> log metadata #2
The model has no metadata
> log chains #2
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #2
---
Chain | Description
A | .
B | .
> log metadata #2
The model has no metadata
> log chains #2
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #2
---
Chain | Description
A | .
B | .
> view clip false
> set bgColor white
> lighting gentle
> graphics silhouettes true width 1
> surface /A
> color /A darkgrey
> color /B light salmon
> transparency 90 target s
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select sel & coil
11355 atoms, 11443 bonds, 1493 residues, 1 model selected
> delete atoms sel
> color halfbond false
> color #5e5e5eff pseudobonds
> style dashes 1
Changed 1 pseudobond dash
> size pseudobondRadius 0.02
Changed 145 pseudobond radii
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
615 distances
> contacts label distance
Expected a keyword
> select #2.3
615 pseudobonds, 1 model selected
> label sel text {0.label_one_letter_code}{0.number}
> ~select
Nothing selected
> hide #2.3.1 models
> show #2.3.1 models
> view #2.3.1 clip false
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_0.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #2
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
842 distances
> contacts (/A & /B) restrict (/B & protein) select true reveal true
No atoms match given atom specifier
> contacts (/A & protein) restrict (/B & protein) select true reveal true
142 contacts
> label sel text {0.label_one_letter_code}{0.number}
> ~select
Nothing selected
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_0.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_0.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #1
> set bgColor white
> lighting gentle
> graphics silhouettes true width 1
> surface /A
> color /A darkgrey
> color /B light salmon
> transparency 90 target s
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select sel & coil
11355 atoms, 11443 bonds, 1493 residues, 1 model selected
> delete atoms sel
> color halfbond false
> color #5e5e5eff pseudobonds
> style dashes 1
Changed 1 pseudobond dash
> size pseudobondRadius 0.02
Changed 145 pseudobond radii
> contacts (/A & protein) restrict (/B & protein) select true reveal true
107 contacts
> label sel text {0.label_one_letter_code}{0.number} ~select
Expected a keyword
> view clip false
> color #2.3 #ff40ffff models
> select add #2
12798 atoms, 12916 bonds, 252 pseudobonds, 1593 residues, 4 models selected
> select subtract #2
1 model selected
> close #2
> open
> "/Users/mbarnkob/Library/CloudStorage/Dropbox/Forskning/2024/Projects/LRBA
> defect/fold_lrba_wt_vs_ctla4_wt/fold_lrba_wt_vs_ctla4_wt_model_1.cif"
Chain information for fold_lrba_wt_vs_ctla4_wt_model_1.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff
740 distances
> label sel text {0.label_one_letter_code}{0.number} ~select
Expected a keyword
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff reveal true
740 distances
> label sel text {0.label_one_letter_code}{0.number} ~select
Expected a keyword
> contacts (/A & protein) restrict (/B & protein) select true reveal true
117 contacts
> label sel text {0.label_one_letter_code}{0.number} ~select
Expected a keyword
> label sel text {0.label_one_letter_code}{0.number} ~select
Expected a keyword
> label sel text {0.label_one_letter_code}{0.number}
> contacts (/A & protein) restrict (/B & protein) select true reveal true
117 contacts
> color #1.1 #ff40ffff models
> close #1.1
> close #1.2
> set bgColor white
> lighting gentle
> graphics silhouettes true width 1
> surface /A
> color /A darkgrey
> color /B light salmon
> transparency 90 target s
> select /A
22425 atoms, 22879 bonds, 2863 residues, 1 model selected
> select sel & coil
11332 atoms, 11418 bonds, 1490 residues, 1 model selected
> delete atoms sel
> color halfbond false
> color #5e5e5eff pseudobonds
> style dashes 1
Changed 1 pseudobond dash
> size pseudobondRadius 0.02
Changed 145 pseudobond radii
> select /B
1728 atoms, 1772 bonds, 223 residues, 1 model selected
> contacts sel restrict cross distanceOnly 5.0 ignoreHiddenModels true color
> #ff40ff reveal true
485 distances
> contacts distanceOnly 5.0 (/A & protein) restrict (/B & protein) sel true
> reveal true
Expected a keyword
> label sel text {0.label_one_letter_code}{0.number} ~select
Expected a keyword
> label sel text {0.label_one_letter_code}{0.number}
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Model Number: MGN73DK/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 8422.121.1
OS Loader Version: 8422.121.1
Software:
System Software Overview:
System Version: macOS 13.4.1 (c) (22F770820d)
Kernel Version: Darwin 22.5.0
Time since boot: 23 timer og 57 minutter
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
LEN T2424pA:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 2 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 2 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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