Opened 2 months ago
Closed 2 months ago
#18431 closed defect (can't reproduce)
Crash in Qt event loop in Mac AutoreleasePoolPage
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Platform | Version: | |
Keywords: | Cc: | pett | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-12.5.1-x86_64-i386-64bit ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000000010a28c600 (most recent call first): File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1057 in init File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1220 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler (total: 41) {"app_name":"ChimeraX","timestamp":"2025-08-14 09:16:24.00 +0800","app_version":"1.10.0","slice_uuid":"f855cdda-9ed8-308a-81a6-2e57ba7af811","build_version":"1.10.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.5.1 (21G83)","incident_id":"6147B6C1-7F60-4A2C-AAB6-D3A76DC01C8E","name":"ChimeraX"} { "uptime" : 460000, "procLaunch" : "2025-08-14 09:15:03.6519 +0800", "procRole" : "Foreground", "version" : 2, "userID" : 501, "deployVersion" : 210, "modelCode" : "MacBookPro15,2", "procStartAbsTime" : 461405568962945, "coalitionID" : 47807, "osVersion" : { "train" : "macOS 12.5.1", "build" : "21G83", "releaseType" : "User" }, "captureTime" : "2025-08-14 09:16:20.2954 +0800", "incident" : "6147B6C1-7F60-4A2C-AAB6-D3A76DC01C8E", "bug_type" : "309", "pid" : 66944, "procExitAbsTime" : 461482183178437, "cpuType" : "X86-64", "procName" : "ChimeraX", "procPath" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX", "bundleInfo" : {"CFBundleShortVersionString":"1.10.0","CFBundleVersion":"1.10.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"}, "storeInfo" : {"deviceIdentifierForVendor":"7474D86D-08EE-5AB7-BEE3-4C4534207785","thirdParty":true}, "parentProc" : "launchd", "parentPid" : 1, "coalitionName" : "edu.ucsf.cgl.ChimeraX", "crashReporterKey" : "C6C3E8A4-6727-9870-8970-EC4AA6F74003", "wakeTime" : 685, "bridgeVersion" : {"build":"19P6066","train":"6.6"}, "sleepWakeUUID" : "7926CCC4-0B80-4DB7-9E58-0CA3710223E3", "sip" : "enabled", "vmRegionInfo" : "0x20 is not in any region. Bytes before following region: 140737488224224\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffffe0000-7ffffffe1000 [ 4K] r-x\/r-x SM=ALI ", "isCorpse" : 1, "exception" : {"codes":"0x0000000000000001, 0x0000000000000020","rawCodes":[1,32],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000020"}, "vmregioninfo" : "0x20 is not in any region. Bytes before following region: 140737488224224\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffffe0000-7ffffffe1000 [ 4K] r-x\/r-x SM=ALI ", "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 0, "threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[72,133,255,116,118,137,248,131,224,1,72,133,192,117,108,72,139,7,72,185,248,255,255,255,255,127,0,0,72,33,193,72,139,81,32,246,194,4,116,84,168,1,116,114,72,185,0,0,0,0,0,0,128,0,72,186,0,0,0,0,0,0,0,1,72,57,200,114,54,72,137,198,72,41,214,114,23,240,72,15,177,55,116,34,168,1,117,232,49,246,186,1,0,0,0,233,70,205,1,0,72,133,200,117,61,72,139,53,24,209,141,65,255,37,218,112,230,63,72,57,206,114,238,195,102,131,121,28,0,121,14,131,226,2,72,133,210,116,6,246,65,40,2,117,31,72,139,53,64,208,141,65,255,37,178,112,230,63,246,65,28,1,116,180,235,213,190,1,0,0,0,233,76,163,0,0,72,139,5,65,140,137,65,255,224,144,144,144,144,144,144,144],"offset":31}},"frames":[{"imageOffset":32782,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":0},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":1},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":2},{"imageOffset":2540852,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":3},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":4},{"imageOffset":0,"imageIndex":5},{"imageOffset":140580,"symbol":"-[__NSArrayM dealloc]","symbolLocation":286,"imageIndex":6},{"imageOffset":562456,"imageIndex":7},{"imageOffset":140770,"symbol":"__RELEASE_OBJECTS_IN_THE_ARRAY__","symbolLocation":119,"imageIndex":6},{"imageOffset":140580,"symbol":"-[__NSArrayM dealloc]","symbolLocation":286,"imageIndex":6},{"imageOffset":53466,"symbol":"AutoreleasePoolPage::releaseUntil(objc_object**)","symbolLocation":164,"imageIndex":8},{"imageOffset":40799,"symbol":"objc_autoreleasePoolPop","symbolLocation":168,"imageIndex":8},{"imageOffset":269210,"symbol":"_CFAutoreleasePoolPop","symbolLocation":22,"imageIndex":6},{"imageOffset":1362747,"symbol":"__CFRunLoopPerCalloutARPEnd","symbolLocation":41,"imageIndex":6},{"imageOffset":524611,"symbol":"__CFRunLoopDoSource0","symbolLocation":228,"imageIndex":6},{"imageOffset":524015,"symbol":"__CFRunLoopDoSources0","symbolLocation":340,"imageIndex":6},{"imageOffset":518312,"symbol":"__CFRunLoopRun","symbolLocation":892,"imageIndex":6},{"imageOffset":515692,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":6},{"imageOffset":189926,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":9},{"imageOffset":188947,"symbol":"ReceiveNextEventCommon","symbolLocation":283,"imageIndex":9},{"imageOffset":188645,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":70,"imageIndex":9},{"imageOffset":257965,"symbol":"_DPSNextEvent","symbolLocation":927,"imageIndex":10},{"imageOffset":251498,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1394,"imageIndex":10},{"imageOffset":195865,"symbol":"-[NSApplication run]","symbolLocation":586,"imageIndex":10},{"imageOffset":94201,"imageIndex":7},{"imageOffset":641430,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":550,"imageIndex":11},{"imageOffset":603336,"symbol":"QCoreApplication::exec()","symbolLocation":152,"imageIndex":11},{"imageOffset":2256252,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":92,"imageIndex":12},{"imageOffset":1044954,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":3},{"imageOffset":630769,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":3},{"imageOffset":1868407,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61255,"imageIndex":3},{"imageOffset":1802218,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":3},{"imageOffset":1779827,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":3},{"imageOffset":1047348,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":3},{"imageOffset":1868159,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61007,"imageIndex":3},{"imageOffset":1892992,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":3},{"imageOffset":2512477,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":3},{"imageOffset":2511137,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":3},{"imageOffset":2515163,"symbol":"pymain_main","symbolLocation":43,"imageIndex":3},{"imageOffset":2515114,"symbol":"Py_Main","symbolLocation":42,"imageIndex":3},{"imageOffset":15848,"symbol":"main","symbolLocation":120,"imageIndex":13},{"imageOffset":21806,"symbol":"start","symbolLocation":462,"imageIndex":14}],"id":7043033,"triggered":true,"threadState":{"r13":{"value":105553141170689},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":11},"rsi":{"value":11},"r8":{"value":2},"cr2":{"value":4353467856},"rdx":{"value":0},"r10":{"value":4465411584,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":14757395258967641293},"r15":{"value":22},"rbx":{"value":4465411584,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703163207694,"matchesCrashFrame":1},"rbp":{"value":140680732989968},"rsp":{"value":140680732989928},"r12":{"value":259},"rcx":{"value":140680732989928},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":7043182,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3470047,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043183,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3470047,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043184,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3470047,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043199,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7043383,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":86688977,"imageIndex":16},{"imageOffset":86688447,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86322109,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043384,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372397,"imageIndex":16},{"imageOffset":86372135,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043385,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372253,"imageIndex":16},{"imageOffset":86372177,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043386,"name":"Chrome_IOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":86688977,"imageIndex":16},{"imageOffset":86688447,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":55741506,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043387,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86121491,"imageIndex":16},{"imageOffset":85749451,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043388,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372397,"imageIndex":16},{"imageOffset":86372135,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043389,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372397,"imageIndex":16},{"imageOffset":86372135,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043390,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372397,"imageIndex":16},{"imageOffset":86372135,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043391,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372397,"imageIndex":16},{"imageOffset":86372135,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043392,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":85749484,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043393,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":86688977,"imageIndex":16},{"imageOffset":86688447,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":136299698,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043394,"name":"CompositorTileWorker1","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":86541385,"imageIndex":16},{"imageOffset":125563013,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043395,"name":"ThreadPoolSingleThreadSharedForeground0","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372445,"imageIndex":16},{"imageOffset":86372197,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043397,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86121491,"imageIndex":16},{"imageOffset":85749451,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043398,"name":"VizCompositorThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86121491,"imageIndex":16},{"imageOffset":85749451,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043399,"name":"NetworkService","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":86688977,"imageIndex":16},{"imageOffset":86688447,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043400,"name":"NetworkNotificationThreadMac","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":525213,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":319,"imageIndex":6},{"imageOffset":518696,"symbol":"__CFRunLoopRun","symbolLocation":1276,"imageIndex":6},{"imageOffset":515692,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":6},{"imageOffset":392458,"symbol":"-[NSRunLoop(NSRunLoop) runMode:beforeDate:]","symbolLocation":216,"imageIndex":17},{"imageOffset":86922134,"imageIndex":16},{"imageOffset":86916035,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043401,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86121491,"imageIndex":16},{"imageOffset":85749451,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043402,"name":"ThreadPoolSingleThreadForegroundBlocking1","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372493,"imageIndex":16},{"imageOffset":86372187,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043485,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86121491,"imageIndex":16},{"imageOffset":85749451,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043487,"name":"Thread (pooled)","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":2384203,"imageIndex":11},{"imageOffset":2383844,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":84,"imageIndex":11},{"imageOffset":2359467,"imageIndex":11},{"imageOffset":2324203,"imageIndex":11},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043490,"name":"Thread (pooled)","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":2384203,"imageIndex":11},{"imageOffset":2383844,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":84,"imageIndex":11},{"imageOffset":2359467,"imageIndex":11},{"imageOffset":2324203,"imageIndex":11},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043530,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372253,"imageIndex":16},{"imageOffset":86372177,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043531,"name":"MemoryInfra","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86121491,"imageIndex":16},{"imageOffset":85749451,"imageIndex":16},{"imageOffset":86266766,"imageIndex":16},{"imageOffset":85981997,"imageIndex":16},{"imageOffset":86433720,"imageIndex":16},{"imageOffset":86434107,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043532,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":86661361,"imageIndex":16},{"imageOffset":86121606,"imageIndex":16},{"imageOffset":86375853,"imageIndex":16},{"imageOffset":86372977,"imageIndex":16},{"imageOffset":86372301,"imageIndex":16},{"imageOffset":86372217,"imageIndex":16},{"imageOffset":86543486,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7043545,"name":"com.apple.NSEventThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":525213,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":319,"imageIndex":6},{"imageOffset":518696,"symbol":"__CFRunLoopRun","symbolLocation":1276,"imageIndex":6},{"imageOffset":515692,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":6},{"imageOffset":1755598,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7044525,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7044526,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7044665,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7044754,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]}], "usedImages" : [ { "source" : "P", "arch" : "x86_64", "base" : 140703163174912, "size" : 229376, "uuid" : "792406fe-2224-3c14-ba9f-f076fd7839d2", "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib", "name" : "libsystem_kernel.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703163404288, "size" : 49152, "uuid" : "f32b6d06-b156-3da0-b086-a31cf011362b", "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib", "name" : "libsystem_pthread.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703162159104, "size" : 561152, "uuid" : "e8499aa8-6800-372f-bd48-82846d88c6cb", "path" : "\/usr\/lib\/system\/libsystem_c.dylib", "name" : "libsystem_c.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4351152128, "CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.", "CFBundleIdentifier" : "org.python.python", "size" : 4030464, "uuid" : "514efc82-c424-3863-84a8-e24ffd50343d", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python", "name" : "Python", "CFBundleVersion" : "3.11.4" }, { "source" : "P", "arch" : "x86_64", "base" : 140703163502592, "size" : 40960, "uuid" : "bd2bd848-f9c9-35ff-9795-32d31977523d", "path" : "\/usr\/lib\/system\/libsystem_platform.dylib", "name" : "libsystem_platform.dylib" }, { "size" : 0, "source" : "A", "base" : 0, "uuid" : "00000000-0000-0000-0000-000000000000" }, { "source" : "P", "arch" : "x86_64h", "base" : 140703163719680, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.CoreFoundation", "size" : 5255168, "uuid" : "c39123bf-9d62-3577-a11f-0a97cc4d9991", "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation", "name" : "CoreFoundation", "CFBundleVersion" : "1866" }, { "source" : "P", "arch" : "x86_64", "base" : 4661637120, "size" : 684032, "uuid" : "3d894e8b-dd80-33bf-9b65-0968588b98fb", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib", "name" : "libqcocoa.dylib" }, { "source" : "P", "arch" : "x86_64h", "base" : 140703161909248, "size" : 237568, "uuid" : "dad86103-17e9-3016-930d-02cad81a5ed9", "path" : "\/usr\/lib\/libobjc.A.dylib", "name" : "libobjc.A.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703311560704, "CFBundleShortVersionString" : "2.1.1", "CFBundleIdentifier" : "com.apple.HIToolbox", "size" : 3096576, "uuid" : "95eab511-8fc1-353a-ac8a-26aa19032e2e", "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox", "name" : "HIToolbox" }, { "source" : "P", "arch" : "x86_64", "base" : 140703208255488, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.AppKit", "size" : 15269888, "uuid" : "bcb46e9b-acd5-3b26-878f-a3988bc5df7e", "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit", "name" : "AppKit", "CFBundleVersion" : "2113.60.148" }, { "source" : "P", "arch" : "x86_64", "base" : 4606070784, "size" : 5300224, "uuid" : "8be7fae3-096a-3bb1-a2c3-8b63cd77a2fc", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore", "name" : "QtCore" }, { "source" : "P", "arch" : "x86_64", "base" : 4453445632, "size" : 2863104, "uuid" : "2f3c783f-90fb-3949-a3e0-84694933d869", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so", "name" : "QtWidgets.abi3.so" }, { "source" : "P", "arch" : "x86_64", "base" : 4335812608, "CFBundleShortVersionString" : "1.10.0", "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX", "size" : 16384, "uuid" : "f855cdda-9ed8-308a-81a6-2e57ba7af811", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX", "name" : "ChimeraX", "CFBundleVersion" : "1.10.0.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4464885760, "size" : 442368, "uuid" : "f71fb3ca-5fcc-3577-9457-b047888a46d1", "path" : "\/usr\/lib\/dyld", "name" : "dyld" }, { "source" : "P", "arch" : "x86_64", "base" : 4465639424, "size" : 66404352, "uuid" : "7048d1fd-b9a9-3f6a-b752-ae8be69f6c3f", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib", "name" : "libopenblas64_.0.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4885921792, "size" : 200445952, "uuid" : "a86c7ae2-0ab4-329f-96a5-799c662db2d5", "path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore", "name" : "QtWebEngineCore" }, { "source" : "P", "arch" : "x86_64", "base" : 140703178907648, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.Foundation", "size" : 3919872, "uuid" : "4cbc4b90-329d-37f0-b94a-0d62254273d0", "path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation", "name" : "Foundation", "CFBundleVersion" : "1866" } ], "sharedCache" : { "base" : 140703160147968, "size" : 19331678208, "uuid" : "4d3a144c-02bb-31f1-bca9-83a5cb058c59" }, "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG backing stores 2160K 4 \nCG image 212K 14 \nColorSync 232K 28 \nCoreAnimation 444K 20 \nCoreGraphics 12K 2 \nCoreUI image data 4504K 32 \nFoundation 40K 2 \nIOKit 7940K 1 \nKernel Alloc Once 8K 1 \nMALLOC 369.0M 183 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 16K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 136K 34 \nStack 197.8M 35 \nStack Guard 56.0M 1 \nVM_ALLOCATE 159.6M 110 \nVM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 41.9M 700 \n__DATA_CONST 42.9M 445 \n__DATA_DIRTY 1806K 240 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 673.2M 128 \n__TEXT 874.6M 697 \n__UNICODE 592K 1 \ndyld private memory 1088K 3 \nmapped file 224.0M 53 \nshared memory 3484K 26 \n=========== ======= ======= \nTOTAL 3.0G 2783 \nTOTAL, minus reserved VM space 2.6G 2783 \n", "legacyInfo" : { "threadTriggered" : { "name" : "CrBrowserMain", "queue" : "com.apple.main-thread" } }, "trialInfo" : { "rollouts" : [ { "rolloutId" : "5fb4245a1bbfe8005e33a1e1", "factorPackIds" : { }, "deploymentId" : 240000021 }, { "rolloutId" : "6112e14f37f5d11121dcd519", "factorPackIds" : { "SIRI_TEXT_TO_SPEECH" : "634710168e8be655c1316aaa" }, "deploymentId" : 240000231 } ], "experiments" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/zln/Downloads/cryosparc_P13_J1762_008_volume_map_sharp.mrc Opened cryosparc_P13_J1762_008_volume_map_sharp.mrc as #1, grid size 256,256,256, pixel 1.09, shown at level 0.0773, step 1, values float32 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > volume #1 level 0.1 > volume #1 level 0.13 > volume #1 level 0.15 > open /Users/zln/Downloads/cryosparc_P13_J1762_008_volume_map_sharp.mrc Opened cryosparc_P13_J1762_008_volume_map_sharp.mrc as #2, grid size 256,256,256, pixel 1.09, shown at level 0.0773, step 1, values float32 > close #2 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/zln/Downloads/cryosparc_P13_J1275_002_volume_map_sharp.mrc Opened cryosparc_P13_J1275_002_volume_map_sharp.mrc as #1, grid size 256,256,256, pixel 1.09, shown at level 0.206, step 1, values float32 OpenGL version: 4.1 INTEL-18.8.4 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.8 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1731.140.2.0.0 (iBridge: 19.16.16066.0.0,0) OS Loader Version: 540.120.3~19 Software: System Software Overview: System Version: macOS 12.5.1 (21G83) Kernel Version: Darwin 21.6.0 Time since boot: 14 days 11:34 Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.4.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.5.0 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.18 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.9.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.58.4 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14
Change History (2)
comment:1 by , 2 months ago
Cc: | added |
---|---|
Component: | Unassigned → Platform |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Crash in Qt event loop in Mac AutoreleasePoolPage |
comment:2 by , 2 months ago
Resolution: | → can't reproduce |
---|---|
Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.