Opened 3 months ago
Closed 3 months ago
#18494 closed defect (can't reproduce)
Crash in Qt event loop after alphafold prediction
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Prediction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.10rc202505210000 (2025-05-21 00:00:04 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010d
Thread 0x00006358 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003aa8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004ebc (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000076f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004da4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000014f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\ssl.py", line 1134 in read
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\ssl.py", line 1278 in recv_into
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\socket.py", line 706 in readinto
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\http\client.py", line 279 in _read_status
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\http\client.py", line 318 in begin
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\http\client.py", line 1378 in getresponse
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 1352 in do_open
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 1391 in https_open
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 496 in _call_chain
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 536 in _open
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 519 in open
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 216 in urlopen
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\toolshed\available.py", line 62 in load
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py", line 516 in reload_available
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000018bc (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 324 in wait
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 622 in wait
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1392 in run
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap
Current thread 0x000048d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
===== Log before crash start =====
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.10rc202505210000 (2025-05-21)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show AlphaFold
> alphafold search
> >MPHRSRGSSRWRFSSRTAARLLVTFYAGLALATASRSSYHNQFPIIPPQIPQEEEGPSRGNGQHEFTLRHIHLRGTHQDPDLHLKLDVTPETRLVTIAEDTGLPEPAETSHLEALSIKSDSIYIQRLADRRPSVIESHLEYARSSGAATVLSDDAWVMDEVDGPDVTSKDTILTLAKMTANDYIEEPGTGDWNIISGRFNWSTNFGWQGDSLRGHIYADATNSTVVISLKGTSPALFDGAETTTNDKVNDNLYFGCCCGQGNSYLSRQACDCSTSVYTANLTCIVEAMRDRNRYYQAAIDLYTNVTALYPQANVWLTGHSLGGAMSGLLGLTFGLPTVTFEAIPDALPAARLGLPTPPGYDPLLPQLRKNTGIFHVGHTADPIYTGTCNGVGATCTWWGYSLESACHAGSMCVYDTVEDKGWRVGIGTHRIKSVIKDVLKAYDEVPPCVPEVECYDCQLWKYFKSNGSEITTTTTTTSTSTSTSITRTSTCQTPGWWGCLDKTTSTSMPITTTEDITTTATTSTSTSTCQTPGWFGCLDKTTSIVSTTAEITTTTAISTPTSTSTCETPGWFGCYDKTTSTGESTTITPEVTATSISDKGKR
Missing or invalid "sequence" argument: Sequences argument
">MPHRSRGSSRWRFSSRTAARLLVTFYAGLALATASRSSYHNQFPIIPPQIPQEEEGPSRGNGQHEFTLRHIHLRGTHQDPDLHLKLDVTPETRLVTIAEDTGLPEPAETSHLEALSIKSDSIYIQRLADRRPSVIESHLEYARSSGAATVLSDDAWVMDEVDGPDVTSKDTILTLAKMTANDYIEEPGTGDWNIISGRFNWSTNFGWQGDSLRGHIYADATNSTVVISLKGTSPALFDGAETTTNDKVNDNLYFGCCCGQGNSYLSRQACDCSTSVYTANLTCIVEAMRDRNRYYQAAIDLYTNVTALYPQANVWLTGHSLGGAMSGLLGLTFGLPTVTFEAIPDALPAARLGLPTPPGYDPLLPQLRKNTGIFHVGHTADPIYTGTCNGVGATCTWWGYSLESACHAGSMCVYDTVEDKGWRVGIGTHRIKSVIKDVLKAYDEVPPCVPEVECYDCQLWKYFKSNGSEITTTTTTTSTSTSTSITRTSTCQTPGWWGCLDKTTSTSMPITTTEDITTTATTSTSTSTCQTPGWFGCLDKTTSIVSTTAEITTTTAISTPTSTSTCETPGWFGCYDKTTSTGESTTITPEVTATSISDKGKR"
is not a chain specifier, alignment id, UniProt id, or sequence characters
> alphafold predict
> >MSHEGLKIGVLLTDPVQLLDLAPIDLFNMATPEYLEIWKKASASSLKNENAVQEVTATSGVRLTHTTADEEVSPGNLDLLFLPGPDPNSEPDDEVKEFLRAHNKHKTTFLVICTAAFVAGYSGIYDSKHVTGPRFLIPNLRKLFPKTEWDESVRWKQDGHIWTAGGITNGNDLVAAYIRATYPSSVAETVCTMAEVGDRPMKFDIGLKRNDTIFPELQRAALLSSAAYSGCIGSAFDINITKQIRDIVTDTQGYIGYSEEKKRIAVVMRGSTAPMDLFNDLDTVLVTPKLSGVDFPPDAMIMSGINIPWSAVHDEVIMEVKRLVTKYPDYTLESTGHSLGGALTYLSYVSLCQNFPDKAVTSNALAAFPIGNQAFADFGSSQHGTLNRGNNALDGVPNIYVTPFNFAHYGTEFYSDGSASNTLKCINERDMDCSAGNGMYGITPQHVFSFGVLEMGAGCGSSL
Missing or invalid "sequences" argument: Sequences argument
">MSHEGLKIGVLLTDPVQLLDLAPIDLFNMATPEYLEIWKKASASSLKNENAVQEVTATSGVRLTHTTADEEVSPGNLDLLFLPGPDPNSEPDDEVKEFLRAHNKHKTTFLVICTAAFVAGYSGIYDSKHVTGPRFLIPNLRKLFPKTEWDESVRWKQDGHIWTAGGITNGNDLVAAYIRATYPSSVAETVCTMAEVGDRPMKFDIGLKRNDTIFPELQRAALLSSAAYSGCIGSAFDINITKQIRDIVTDTQGYIGYSEEKKRIAVVMRGSTAPMDLFNDLDTVLVTPKLSGVDFPPDAMIMSGINIPWSAVHDEVIMEVKRLVTKYPDYTLESTGHSLGGALTYLSYVSLCQNFPDKAVTSNALAAFPIGNQAFADFGSSQHGTLNRGNNALDGVPNIYVTPFNFAHYGTEFYSDGSASNTLKCINERDMDCSAGNGMYGITPQHVFSFGVLEMGAGCGSSL"
is not a chain specifier, alignment id, UniProt id, or sequence characters
> alphafold predict
> MSHEGLKIGVLLTDPVQLLDLAPIDLFNMATPEYLEIWKKASASSLKNENAVQEVTATSGVRLTHTTADEEVSPGNLDLLFLPGPDPNSEPDDEVKEFLRAHNKHKTTFLVICTAAFVAGYSGIYDSKHVTGPRFLIPNLRKLFPKTEWDESVRWKQDGHIWTAGGITNGNDLVAAYIRATYPSSVAETVCTMAEVGDRPMKFDIGLKRNDTIFPELQRAALLSSAAYSGCIGSAFDINITKQIRDIVTDTQGYIGYSEEKKRIAVVMRGSTAPMDLFNDLDTVLVTPKLSGVDFPPDAMIMSGINIPWSAVHDEVIMEVKRLVTKYPDYTLESTGHSLGGALTYLSYVSLCQNFPDKAVTSNALAAFPIGNQAFADFGSSQHGTLNRGNNALDGVPNIYVTPFNFAHYGTEFYSDGSASNTLKCINERDMDCSAGNGMYGITPQHVFSFGVLEMGAGCGSSL
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10rc202505210000 (2025-05-21)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 30.0.100.9864
OpenGL renderer: Intel(R) UHD Graphics 600
OpenGL vendor: Intel
Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: ASUSTeK COMPUTER INC.
Model: VivoBook_ASUSLaptop X515MA_X515MA
OS: Microsoft Windows 11 Home Single Language (Build 26100)
Memory: 4,109,103,104
MaxProcessMemory: 137,438,953,344
CPU: 2 Intel(R) Celeron(R) N4020 CPU @ 1.10GHz
OSLanguage: en-US
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.3.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.3.3
build: 1.2.2.post1
certifi: 2025.4.26
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.3
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.6
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10rc202505210000
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.1
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.10
contourpy: 1.3.2
coverage: 7.8.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.0
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.13.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.3.5
pytest-cov: 6.1.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pywin32: 310
pyzmq: 26.4.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5
traitlets: 5.14.3
typing_extensions: 4.13.2
tzdata: 2025.2
urllib3: 2.4.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
WMI: 1.5.1
Change History (2)
comment:1 by , 3 months ago
| Component: | Unassigned → Structure Prediction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in alphafold predict |
comment:2 by , 3 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
| Summary: | Crash in alphafold predict → Crash in Qt event loop after alphafold prediction |
The crash report only says that it crashed in the Qt event loop. Possibly this was caused by some mouse interaction with the AlphaFold Run window since the log shows some alphafold prediction was started. The AlphaFold Run window is a Qt html window and I suspect that this has some bugs that can lead to crashes. But I have no reproducible case and the bug would be in the Qt project not in ChimeraX.
If the crash happened when you were using the mouse in the AlphaFold Run window or when doing some other mouse interaction with ChimeraX I would like to know what mouse action caused the crash.
Reported by Akshita Rajbhar