Opened 2 months ago
Closed 2 months ago
#18494 closed defect (can't reproduce)
Crash in Qt event loop after alphafold prediction
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Structure Prediction | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.10rc202505210000 (2025-05-21 00:00:04 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010d Thread 0x00006358 (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00003aa8 (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00004ebc (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\connection.py", line 878 in wait File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000076f8 (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00004da4 (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000014f8 (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\ssl.py", line 1134 in read File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\ssl.py", line 1278 in recv_into File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\socket.py", line 706 in readinto File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\http\client.py", line 279 in _read_status File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\http\client.py", line 318 in begin File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\http\client.py", line 1378 in getresponse File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 1352 in do_open File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 1391 in https_open File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 496 in _call_chain File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 536 in _open File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 519 in open File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\urllib\request.py", line 216 in urlopen File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\toolshed\available.py", line 62 in load File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py", line 516 in reload_available File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000018bc (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 324 in wait File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 622 in wait File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1392 in run File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\threading.py", line 995 in _bootstrap Current thread 0x000048d8 (most recent call first): File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init File "C:\Program Files\ChimeraX 1.10rc202505210000\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main ===== Log before crash start ===== You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.10rc202505210000 (2025-05-21) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > ui tool show AlphaFold > alphafold search > >MPHRSRGSSRWRFSSRTAARLLVTFYAGLALATASRSSYHNQFPIIPPQIPQEEEGPSRGNGQHEFTLRHIHLRGTHQDPDLHLKLDVTPETRLVTIAEDTGLPEPAETSHLEALSIKSDSIYIQRLADRRPSVIESHLEYARSSGAATVLSDDAWVMDEVDGPDVTSKDTILTLAKMTANDYIEEPGTGDWNIISGRFNWSTNFGWQGDSLRGHIYADATNSTVVISLKGTSPALFDGAETTTNDKVNDNLYFGCCCGQGNSYLSRQACDCSTSVYTANLTCIVEAMRDRNRYYQAAIDLYTNVTALYPQANVWLTGHSLGGAMSGLLGLTFGLPTVTFEAIPDALPAARLGLPTPPGYDPLLPQLRKNTGIFHVGHTADPIYTGTCNGVGATCTWWGYSLESACHAGSMCVYDTVEDKGWRVGIGTHRIKSVIKDVLKAYDEVPPCVPEVECYDCQLWKYFKSNGSEITTTTTTTSTSTSTSITRTSTCQTPGWWGCLDKTTSTSMPITTTEDITTTATTSTSTSTCQTPGWFGCLDKTTSIVSTTAEITTTTAISTPTSTSTCETPGWFGCYDKTTSTGESTTITPEVTATSISDKGKR Missing or invalid "sequence" argument: Sequences argument ">MPHRSRGSSRWRFSSRTAARLLVTFYAGLALATASRSSYHNQFPIIPPQIPQEEEGPSRGNGQHEFTLRHIHLRGTHQDPDLHLKLDVTPETRLVTIAEDTGLPEPAETSHLEALSIKSDSIYIQRLADRRPSVIESHLEYARSSGAATVLSDDAWVMDEVDGPDVTSKDTILTLAKMTANDYIEEPGTGDWNIISGRFNWSTNFGWQGDSLRGHIYADATNSTVVISLKGTSPALFDGAETTTNDKVNDNLYFGCCCGQGNSYLSRQACDCSTSVYTANLTCIVEAMRDRNRYYQAAIDLYTNVTALYPQANVWLTGHSLGGAMSGLLGLTFGLPTVTFEAIPDALPAARLGLPTPPGYDPLLPQLRKNTGIFHVGHTADPIYTGTCNGVGATCTWWGYSLESACHAGSMCVYDTVEDKGWRVGIGTHRIKSVIKDVLKAYDEVPPCVPEVECYDCQLWKYFKSNGSEITTTTTTTSTSTSTSITRTSTCQTPGWWGCLDKTTSTSMPITTTEDITTTATTSTSTSTCQTPGWFGCLDKTTSIVSTTAEITTTTAISTPTSTSTCETPGWFGCYDKTTSTGESTTITPEVTATSISDKGKR" is not a chain specifier, alignment id, UniProt id, or sequence characters > alphafold predict > >MSHEGLKIGVLLTDPVQLLDLAPIDLFNMATPEYLEIWKKASASSLKNENAVQEVTATSGVRLTHTTADEEVSPGNLDLLFLPGPDPNSEPDDEVKEFLRAHNKHKTTFLVICTAAFVAGYSGIYDSKHVTGPRFLIPNLRKLFPKTEWDESVRWKQDGHIWTAGGITNGNDLVAAYIRATYPSSVAETVCTMAEVGDRPMKFDIGLKRNDTIFPELQRAALLSSAAYSGCIGSAFDINITKQIRDIVTDTQGYIGYSEEKKRIAVVMRGSTAPMDLFNDLDTVLVTPKLSGVDFPPDAMIMSGINIPWSAVHDEVIMEVKRLVTKYPDYTLESTGHSLGGALTYLSYVSLCQNFPDKAVTSNALAAFPIGNQAFADFGSSQHGTLNRGNNALDGVPNIYVTPFNFAHYGTEFYSDGSASNTLKCINERDMDCSAGNGMYGITPQHVFSFGVLEMGAGCGSSL Missing or invalid "sequences" argument: Sequences argument ">MSHEGLKIGVLLTDPVQLLDLAPIDLFNMATPEYLEIWKKASASSLKNENAVQEVTATSGVRLTHTTADEEVSPGNLDLLFLPGPDPNSEPDDEVKEFLRAHNKHKTTFLVICTAAFVAGYSGIYDSKHVTGPRFLIPNLRKLFPKTEWDESVRWKQDGHIWTAGGITNGNDLVAAYIRATYPSSVAETVCTMAEVGDRPMKFDIGLKRNDTIFPELQRAALLSSAAYSGCIGSAFDINITKQIRDIVTDTQGYIGYSEEKKRIAVVMRGSTAPMDLFNDLDTVLVTPKLSGVDFPPDAMIMSGINIPWSAVHDEVIMEVKRLVTKYPDYTLESTGHSLGGALTYLSYVSLCQNFPDKAVTSNALAAFPIGNQAFADFGSSQHGTLNRGNNALDGVPNIYVTPFNFAHYGTEFYSDGSASNTLKCINERDMDCSAGNGMYGITPQHVFSFGVLEMGAGCGSSL" is not a chain specifier, alignment id, UniProt id, or sequence characters > alphafold predict > MSHEGLKIGVLLTDPVQLLDLAPIDLFNMATPEYLEIWKKASASSLKNENAVQEVTATSGVRLTHTTADEEVSPGNLDLLFLPGPDPNSEPDDEVKEFLRAHNKHKTTFLVICTAAFVAGYSGIYDSKHVTGPRFLIPNLRKLFPKTEWDESVRWKQDGHIWTAGGITNGNDLVAAYIRATYPSSVAETVCTMAEVGDRPMKFDIGLKRNDTIFPELQRAALLSSAAYSGCIGSAFDINITKQIRDIVTDTQGYIGYSEEKKRIAVVMRGSTAPMDLFNDLDTVLVTPKLSGVDFPPDAMIMSGINIPWSAVHDEVIMEVKRLVTKYPDYTLESTGHSLGGALTYLSYVSLCQNFPDKAVTSNALAAFPIGNQAFADFGSSQHGTLNRGNNALDGVPNIYVTPFNFAHYGTEFYSDGSASNTLKCINERDMDCSAGNGMYGITPQHVFSFGVLEMGAGCGSSL ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10rc202505210000 (2025-05-21) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 - Build 30.0.100.9864 OpenGL renderer: Intel(R) UHD Graphics 600 OpenGL vendor: Intel Python: 3.11.4 Locale: en_US.cp1252 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: windows Manufacturer: ASUSTeK COMPUTER INC. Model: VivoBook_ASUSLaptop X515MA_X515MA OS: Microsoft Windows 11 Home Single Language (Build 26100) Memory: 4,109,103,104 MaxProcessMemory: 137,438,953,344 CPU: 2 Intel(R) Celeron(R) N4020 CPU @ 1.10GHz OSLanguage: en-US Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 asttokens: 3.0.0 auditwheel: 6.3.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.3.3 build: 1.2.2.post1 certifi: 2025.4.26 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.3 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.6 ChimeraX-AtomicLibrary: 14.1.18 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10rc202505210000 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.1 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.10 contourpy: 1.3.2 coverage: 7.8.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.58.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.13.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.3.5 pytest-cov: 6.1.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pywin32: 310 pyzmq: 26.4.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5 traitlets: 5.14.3 typing_extensions: 4.13.2 tzdata: 2025.2 urllib3: 2.4.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 WMI: 1.5.1
Change History (2)
comment:1 by , 2 months ago
Component: | Unassigned → Structure Prediction |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Crash in alphafold predict |
comment:2 by , 2 months ago
Resolution: | → can't reproduce |
---|---|
Status: | assigned → closed |
Summary: | Crash in alphafold predict → Crash in Qt event loop after alphafold prediction |
The crash report only says that it crashed in the Qt event loop. Possibly this was caused by some mouse interaction with the AlphaFold Run window since the log shows some alphafold prediction was started. The AlphaFold Run window is a Qt html window and I suspect that this has some bugs that can lead to crashes. But I have no reproducible case and the bug would be in the Qt project not in ChimeraX.
If the crash happened when you were using the mouse in the AlphaFold Run window or when doing some other mouse interaction with ChimeraX I would like to know what mouse action caused the crash.
Reported by Akshita Rajbhar