![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 months ago
Closed 2 months ago
#18408 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 560000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"coalitionID" : 10529,
"osVersion" : {
"train" : "macOS 15.5",
"build" : "24F74",
"releaseType" : "User"
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"captureTime" : "2025-08-11 13:30:41.9852 -0400",
"codeSigningMonitor" : 1,
"incident" : "02B2C3DB-68FF-4658-88BB-93D064D85F01",
"pid" : 67341,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-08-11 12:56:46.4988 -0400",
"procStartAbsTime" : 13556816418708,
"procExitAbsTime" : 13605666318693,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "EF5AAA9A-F499-B658-7349-1166846932E0",
"appleIntelligenceStatus" : {"state":"unavailable","reasons":["notOptedIn","assetIsNotReady"]},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"IAAg1AAAINQAAEDUIAAg1AAAINQAAEDUIAAg1AAAINQAAEDUIAAg1A==","atPC":"AAAg1AAAQNQgACDUAAAg1AAAQNQgACDUAAAg1AAAQNQgACDUAAAg1A=="},
"bootSessionUUID" : "23B42B46-8B73-42EA-BA82-66C0D3C06720",
"wakeTime" : 15680,
"sleepWakeUUID" : "972AEA01-118F-4956-90A6-C73F68971EAA",
"sip" : "enabled",
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"termination" : {"flags":0,"code":5,"namespace":"SIGNAL","indicator":"Trace\/BPT trap: 5","byProc":"exc handler","byPid":67341},
"os_fault" : {"process":"ChimeraX"},
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"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5918261248,
"size" : 32768,
"uuid" : "77608453-0c22-327c-909a-3e61997f035f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5920571392,
"size" : 229376,
"uuid" : "6ae5d9b1-7feb-31a5-b3c1-09bfbb908790",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5918359552,
"size" : 32768,
"uuid" : "2170e2a2-3e24-3e7d-889f-70bfe1445514",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5938675712,
"size" : 8011776,
"uuid" : "2297c440-bc47-3988-b508-c4f43a12de4c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5918457856,
"size" : 32768,
"uuid" : "aaf72e4f-a4b5-3143-abe4-cd0b9c88e736",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5919080448,
"size" : 32768,
"uuid" : "97f0c601-577c-3e3d-9728-1b67a04a846f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5919178752,
"size" : 32768,
"uuid" : "73065b31-2315-3d94-8ece-5a8b66a743b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5846777856,
"size" : 16384,
"uuid" : "117d4c42-f31b-3051-a57f-edb1c3f20c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5931237376,
"size" : 16384,
"uuid" : "c37482c0-7aab-3517-b3ef-3bd2294eab02",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multiprocessing.cpython-311-darwin.so",
"name" : "_multiprocessing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5931319296,
"size" : 16384,
"uuid" : "8adb9cd8-9a20-315f-9e59-70cbd8d6a9ed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixshmem.cpython-311-darwin.so",
"name" : "_posixshmem.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5947195392,
"size" : 81920,
"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5947375616,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5930074112,
"size" : 32768,
"uuid" : "2c043e84-38d8-33d9-a9a4-ff18ae1f885f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5928304640,
"size" : 16384,
"uuid" : "802f0c32-e7ad-3a81-ac8d-ae72c0022ae6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5973295104,
"size" : 32768,
"uuid" : "f6112c45-e8b3-3787-a9ab-c7209e77530f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5958746112,
"size" : 16384,
"uuid" : "c802abe8-4352-3827-8717-7d4c0f0892ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5986451456,
"size" : 245760,
"uuid" : "c7819f04-9645-3279-a9b2-949ff87e6eea",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/segment\/_segment.cpython-311-darwin.so",
"name" : "_segment.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6628364288,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 21568640,
"uuid" : "5d0da1bd-412c-3ed8-84e9-40ca62fe7b42",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2575.60.5"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6662352896,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 5395200,
"uuid" : "3a386772-a7fe-3359-aac4-1ae9c903cb49",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6559617024,
"size" : 288576,
"uuid" : "8bf83cda-8db1-3d46-94b0-d811bd77e078",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6561878016,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5500928,
"uuid" : "df489a59-b4f6-32b8-9bb4-9b832960aa52",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3502.1.401"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6757224448,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3174368,
"uuid" : "9286e29f-fcee-31d0-acea-2842ea23bedf",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6557597696,
"size" : 636112,
"uuid" : "9cf0401a-a938-389e-a77d-9e9608076ccf",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6561398784,
"size" : 51784,
"uuid" : "647b91fc-96d3-3bbb-af08-970df45257c8",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
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"arch" : "arm64e",
"base" : 6561153024,
"size" : 243284,
"uuid" : "60485b6f-67e5-38c1-aec9-efd6031ff166",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
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"arch" : "arm64e",
"base" : 6560452608,
"size" : 577528,
"uuid" : "875203a1-087b-33a6-93a5-928bb7e9114c",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 6556762112,
"size" : 5047205888,
"uuid" : "d7397d7f-8df9-3920-81a7-c0a144be9c51"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=3.5G written=120.7M(3%) resident=2217K(0%) swapped_out=118.5M(3%) unallocated=3.4G(97%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 544K 24 \nColorSync 656K 33 \nCoreAnimation 2144K 125 \nCoreGraphics 96K 6 \nCoreUI image data 5360K 38 \nFoundation 16K 1 \nKernel Alloc Once 32K 1 \nMALLOC 2.6G 149 \nMALLOC guard page 288K 18 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.9M 56 \nStack 342.4M 56 \nVM_ALLOCATE 517.9M 2510 \nVM_ALLOCATE (reserved) 96.0M 2 reserved VM address space (unallocated)\n__AUTH 5446K 692 \n__AUTH_CONST 76.9M 939 \n__CTF 824 1 \n__DATA 33.7M 1074 \n__DATA_CONST 36.6M 1092 \n__DATA_DIRTY 2777K 341 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 644.6M 147 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1112 \n__TPRO_CONST 128K 2 \ndyld private memory 896K 8 \nmapped file 276.1M 64 \npage table in kernel 2217K 1 \nshared memory 3184K 24 \n=========== ======= ======= \nTOTAL 6.0G 8530 \nTOTAL, minus reserved VM space 5.9G 8530 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "dbae9825e2582512933fe99fc7998343cbe41fa7",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "60da5e84ab0ca017dace9abf",
"factorPackIds" : {
},
"deploymentId" : 240000008
},
{
"rolloutId" : "652eff3d1bce5442b8d753c9",
"factorPackIds" : {
},
"deploymentId" : 240000009
}
],
"experiments" : [
{
"treatmentId" : "f18344bb-554f-48ae-8449-e108a8813a55",
"experimentId" : "6685b5584477001000e8c6c9",
"deploymentId" : 400000009
}
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/shoichi/Desktop/ChimeraXdTV4/Rev-dTV4-L0.18.mrc
Opened Rev-dTV4-L0.18.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.144, step 1, values float32
> open /Users/shoichi/Desktop/ChimeraXdTV4/Rev-dTV4.mrc
Opened Rev-dTV4.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.145, step 1, values float32
> volume #1 level 0.05489
> hide #!1 models
> volume #2 level 0.06217
> ui tool show "Side View"
> hide #!2 models
> show #!1 models
> volume #1 level 0.03798
> volume #1 level 0.03375
> ui tool show "Segment Map"
> close #2
Segmenting Rev-dTV4-L0.18.mrc, density threshold 0.033750
Showing 391 region surfaces
7655 watershed regions, grouped to 391 regions
Showing Rev-dTV4-L0.18.seg - 391 regions, 391 surfaces
> select #2.4
1 model selected
> select add #2.102
2 models selected
> select add #2.16
3 models selected
> select add #2.124
4 models selected
> select add #2.110
5 models selected
> select add #2.29
6 models selected
> select add #2.70
7 models selected
> select add #2.19
8 models selected
> select add #2.115
9 models selected
> select add #2.64
10 models selected
> select add #2.84
11 models selected
> select add #2.73
12 models selected
> select add #2.47
13 models selected
> select add #2.95
14 models selected
> select add #2.125
15 models selected
> select add #2.23
16 models selected
> select add #2.28
17 models selected
> select add #2.46
18 models selected
> select add #2.38
19 models selected
> select add #2.1
20 models selected
Grouped 20 regions
> hide #!1 models
> select add #2.153
2 models selected
> select add #2.113
3 models selected
> select add #2.142
4 models selected
> select add #2.158
5 models selected
> select add #2.31
6 models selected
> select add #2.106
7 models selected
> select add #2.178
8 models selected
> select add #2.42
9 models selected
> select subtract #2.42
8 models selected
> select add #2.42
9 models selected
> select add #2.60
10 models selected
> select add #2.94
11 models selected
> select add #2.55
12 models selected
> select add #2.49
13 models selected
> select add #2.24
14 models selected
> select add #2.118
15 models selected
> select subtract #2.118
14 models selected
> select add #2.112
15 models selected
> select add #2.118
16 models selected
> select add #2.129
17 models selected
Drag select of 10634, 39 of 51724 triangles, 9698, 24 of 7856 triangles
> select add #2.109
20 models selected
> select add #2.154
21 models selected
> select add #2.9
22 models selected
> select add #2.8
23 models selected
> select add #2.10
24 models selected
> select add #2.15
25 models selected
> select add #2.83
26 models selected
> select add #2.43
27 models selected
> select add #2.105
28 models selected
> select add #2.25
29 models selected
> select add #2.21
30 models selected
> select add #2.78
31 models selected
> select add #2.100
32 models selected
> select clear
Drag select of 10640, 10646, 10564, 10535, 10563, 10590, 10567, 10543, 10616,
10641, 10589, 10584, 22198 of 23268 triangles, 10579, 19784 of 20296
triangles, 10630, 10580, 20551 of 20680 triangles, 10621, 10627, 10632, 10649,
17491 of 17604 triangles, 10583, 10612, 10687, 10581, 10673, 10623, 14467 of
15776 triangles, 10175, 10697, 10217, 10513, 12633 of 13580 triangles, 10626,
10647, 10213, 10358, 10625, 10622, 10633, 10459, 10436, 10663, 10215, 10481,
9677, 7768 of 9896 triangles, 9478, 10591, 9468, 10643, 10218, 10565 of 11636
triangles, 10220, 10682, 9051 of 9880 triangles, 10450, 10686, 7187 of 8376
triangles, 10678, 10435, 10620, 6700 of 7340 triangles, 10381, 5654 of 7240
triangles, 10619, 6855 of 7748 triangles, 10688, 6263 of 6836 triangles,
10448, 6598 of 7632 triangles, 10674, 6325 of 6920 triangles, 10675, 6406 of
6748 triangles, 10329, 6204 of 7036 triangles, 10527, 4848 of 6572 triangles,
10512, 6158 of 6172 triangles, 10669, 9665, 5922 of 6788 triangles, 9797,
10478, 6592 of 6724 triangles, 10101, 10477, 5330 of 5628 triangles, 10587,
9477, 10049, 4391 of 5888 triangles, 10690, 9670, 5054 of 5856 triangles,
10651, 10601, 10629, 10497, 10012, 10672, 9251, 10189, 9488, 10588, 10251,
9686, 8678, 10574, 1527, 9481, 2716 of 4032 triangles, 3140, 9647, 2383, 8209,
2796 of 2992 triangles, 10540, 1187, 10268, 10551, 10575, 10603, 4107 of 4292
triangles, 10368, 10092, 10415, 10676, 10573, 9419, 10611, 3858 of 4224
triangles, 10412, 10528, 10357, 10541, 10666, 10613, 10683, 9550, 10614,
10605, 10236, 10693, 10677, 3430 of 3820 triangles, 10550, 3432 of 3568
triangles, 9609, 10694, 9841, 10568, 10652, 10594, 853 of 2968 triangles,
10569, 10462, 10671, 10609, 10610, 10310, 9350, 10595, 1689 of 2312 triangles,
10600, 10341, 10565, 10137, 10636, 10578, 9150, 10394, 10639, 10248, 10437,
9438, 10571, 1273 of 1864 triangles, 10602, 10405, 1604 of 1608 triangles,
10416, 10390, 10606, 748 of 1592 triangles, 10638, 1334 of 1456 triangles,
10653, 1515 of 1680 triangles, 10401, 10572, 10409, 9928, 10468, 9783, 10350,
10518, 9211, 10262, 1372 of 1376 triangles, 10495, 10661, 10539, 10311, 10306,
9831, 608 of 636 triangles, 10655, 10546, 10570, 10644, 864 of 1152 triangles,
10418, 9952, 10270, 10685, 10667, 799 of 808 triangles, 10668, 10654, 10052,
10544, 10701, 10596, 10608, 10642, 10474, 10252, 10597, 612 of 820 triangles,
10615, 10618, 10492, 10194, 10692, 10577, 10457, 202 of 616 triangles, 10425,
10210, 10186, 10420, 554 of 832 triangles, 10205, 10645, 9530, 10244, 10598,
11, 854, 10363, 8009, 10413, 10267, 10204, 10187, 139, 10607, 9994, 10354, 432
of 588 triangles, 10208, 405 of 416 triangles, 10657, 340 of 460 triangles,
10659, 380 of 476 triangles, 10576, 10471, 10455, 10434, 9765, 9844, 10439,
10679, 9959, 260 of 376 triangles, 10296, 314, 10637, 10493, 10438, 10361, 244
of 316 triangles, 10488, 10324, 148 of 396 triangles, 100, 10033, 10427,
10355, 48 of 244 triangles, 9551, 10624, 48 of 256 triangles, 9857, 10307,
9344, 576, 9172, 10670, 10684, 128 of 176 triangles, 10424, 10384, 3135, 3040,
10097, 44 of 128 triangles, 9974, 10496, 10664, 88, 3188, 3166, 10486, 26 of
76 triangles, 3070, 2884, 3300, 51 of 56 triangles, 3297, 3280, 3231, 3220,
3136, 3097, 10703, 5357 of 365400 triangles
Drag select of 10010, 10470, 9964, 10467, 74, 118, 10198, 84, 73, 324, 82
> select clear
> select #2.31
1 model selected
> select add #2.24
2 models selected
> select add #2.158
3 models selected
> select add #2.142
4 models selected
> select add #2.113
5 models selected
> select add #2.153
6 models selected
> select add #2.42
7 models selected
> select add #2.60
8 models selected
> select add #2.94
9 models selected
> select add #2.55
10 models selected
Drag select of 9279, 7 of 18740 triangles, 10339, 6 of 8324 triangles
Grouped 12 regions
> select #2.21
1 model selected
> select add #2.78
2 models selected
> select add #2.100
3 models selected
> select add #2.141
4 models selected
> select add #2.39
5 models selected
> select add #2.33
6 models selected
> select add #2.71
7 models selected
> select add #2.57
8 models selected
> select add #2.63
9 models selected
> select add #2.144
10 models selected
> select add #2.82
11 models selected
> select add #2.111
12 models selected
> select add #2.79
13 models selected
> select add #2.76
14 models selected
> select add #2.65
15 models selected
> select add #2.37
16 models selected
> select add #2.150
17 models selected
Grouped 17 regions
> select #2.4
1 model selected
> select add #2.16
2 models selected
> select add #2.131
3 models selected
> select add #2.109
4 models selected
> select add #2.154
5 models selected
> select add #2.118
6 models selected
> select add #2.112
7 models selected
Grouped 7 regions
> select add #2.135
2 models selected
> select add #2.43
3 models selected
Grouped 3 regions
> select #2.4
1 model selected
> select #2.87
1 model selected
> select add #2.4
2 models selected
> select add #2.178
3 models selected
> select add #2.106
4 models selected
> select clear
> select #2.4
1 model selected
> select add #2.87
2 models selected
Grouped 2 regions
Showing 336 region surfaces
> select #2.1
1 model selected
Ungrouped to 20 regions
> select clear
Drag select of 10640, 37904 of 43052 triangles, 10646, 10564, 10535, 25529 of
26228 triangles, 10563, 10590, 10567, 10543, 8047 of 22628 triangles, 10616,
10641, 10589, 33936 of 34180 triangles, 10584, 22543 of 23268 triangles,
10579, 18688 of 20296 triangles, 10630, 12794 of 17508 triangles, 10580, 18372
of 20680 triangles, 10621, 10627, 10632, 13812 of 15508 triangles, 10649,
16789 of 17604 triangles, 10583, 14953 of 16324 triangles, 10612, 21881 of
22584 triangles, 10687, 10581, 13851 of 15916 triangles, 10673, 10623, 15744
of 15776 triangles, 10175, 10697, 10217, 10513, 10626, 20784 of 20824
triangles, 10647, 10213, 10625, 10622, 10633, 9951 of 11164 triangles, 10459,
11318 of 13076 triangles, 10436, 10663, 10215, 10481, 4997 of 11896 triangles,
9677, 9478, 10591, 9468, 10643, 10218, 10220, 10682, 7336 of 9880 triangles,
10450, 10686, 5937 of 8376 triangles, 10678, 10435, 10620, 6507 of 7340
triangles, 10381, 5435 of 7240 triangles, 10619, 6849 of 7748 triangles,
10688, 4720 of 6836 triangles, 10448, 6941 of 7632 triangles, 10674, 6044 of
6920 triangles, 10675, 6300 of 6748 triangles, 10329, 6794 of 7036 triangles,
10527, 5645 of 6572 triangles, 10512, 10669, 9665, 9797, 10478, 10101, 10477,
4298 of 5628 triangles, 10587, 9477, 10049, 5715 of 5888 triangles, 10690,
9670, 10651, 7481 of 10300 triangles, 10601, 3523 of 16768 triangles, 10629,
10497, 10012, 10672, 9251, 10189, 5558 of 5688 triangles, 9488, 10588, 10251,
4884 of 5520 triangles, 9686, 8678, 10574, 1527, 9481, 3140, 9647, 2383, 8209,
2860 of 2992 triangles, 10540, 1187, 10268, 170 of 5240 triangles, 10575,
10092, 2179 of 2484 triangles, 10415, 108 of 3436 triangles, 10573, 4494 of
4780 triangles, 9419, 767 of 2064 triangles, 10611, 10412, 10528, 2561 of 2704
triangles, 10541, 3337 of 4420 triangles, 10613, 10683, 2395 of 2516
triangles, 10614, 10605, 10236, 10693, 10677, 3732 of 3820 triangles, 10550,
3413 of 3568 triangles, 9609, 10694, 2104 of 2280 triangles, 10568, 10652,
2314 of 3064 triangles, 10594, 2331 of 2968 triangles, 10569, 3189 of 3204
triangles, 10462, 10671, 10610, 2333 of 2396 triangles, 10310, 2027 of 2236
triangles, 10595, 1069 of 2312 triangles, 10600, 10341, 10565, 529 of 2364
triangles, 10137, 10636, 10578, 1285 of 2016 triangles, 9150, 972 of 1388
triangles, 10394, 10639, 231 of 2124 triangles, 10248, 10437, 9438, 10571,
10405, 1071 of 1608 triangles, 10416, 10390, 10606, 1533 of 1592 triangles,
10638, 10653, 10401, 10572, 18 of 1504 triangles, 10409, 212 of 1272
triangles, 9928, 10468, 9783, 10518, 9211, 359 of 1056 triangles, 10010, 824
of 828 triangles, 10262, 10495, 372 of 864 triangles, 10661, 10539, 10311, 146
of 944 triangles, 10306, 9831, 60 of 636 triangles, 10655, 10546, 840 of 1100
triangles, 10570, 451 of 872 triangles, 10644, 816 of 1152 triangles, 9952,
10270, 448 of 924 triangles, 10470, 30 of 668 triangles, 10654, 10052, 10544,
785 of 948 triangles, 10608, 91 of 768 triangles, 10642, 10474, 10252, 10597,
356 of 820 triangles, 10615, 112 of 744 triangles, 10194, 672 of 780
triangles, 10692, 10577, 10425, 711 of 792 triangles, 10210, 81 of 772
triangles, 10186, 190 of 708 triangles, 10420, 10205, 10645, 809 of 816
triangles, 10244, 455 of 716 triangles, 854, 10363, 9964, 10267, 336 of 576
triangles, 10204, 10187, 150 of 496 triangles, 9994, 51 of 464 triangles,
10208, 10657, 10659, 10576, 9765, 10439, 377 of 452 triangles, 9959, 348 of
376 triangles, 10296, 10637, 336 of 384 triangles, 10438, 10361, 306 of 316
triangles, 10324, 10427, 10355, 48 of 244 triangles, 10624, 96 of 256
triangles, 10307, 9344, 576, 9172, 10198, 126 of 220 triangles, 10670, 69 of
212 triangles, 10684, 10424, 128 of 184 triangles, 3135, 3040, 10664, 3188,
3166, 3070, 2884, 3280, 324, 82, 3231, 3220, 3136, 3097, 10586, 9420 of 29920
triangles
> select #2.23
1 model selected
> select add #2.29
2 models selected
Grouped 2 regions
> select #2.21
1 model selected
> select add #2.47
2 models selected
Ungrouped to 5 regions
> select #2.23
1 model selected
> select add #2.64
2 models selected
> select subtract #2.64
1 model selected
> select add #2.65
2 models selected
> select add #2.49
3 models selected
> select add #2.64
4 models selected
> select #2.49
1 model selected
Ungrouped to 2 regions
> select #2.64
1 model selected
> select #2.65
1 model selected
> select add #2.64
2 models selected
> select add #2.47
3 models selected
> select add #2.23
4 models selected
> select subtract #2.23
3 models selected
Grouped 3 regions
> select #2.4
1 model selected
Ungrouped to 2 regions
Ungrouped to 5 regions
Ungrouped to 21 regions
> select subtract #2.109
20 models selected
Grouped 20 regions
> select #2.109
1 model selected
Ungrouped to 12 regions
> select subtract #2.71
11 models selected
> select subtract #2.64
10 models selected
> select subtract #2.73
9 models selected
> select subtract #2.79
8 models selected
Grouped 8 regions
> select add #2.31
2 models selected
> select #2.1
1 model selected
> select add #2.79
2 models selected
> select add #2.73
3 models selected
> select add #2.64
4 models selected
> select add #2.71
5 models selected
Grouped 5 regions
Showing 357 region surfaces
> select clear
Drag select of 10640, 10646, 10564, 10535, 10563, 10590, 10567, 54359 of 55996
triangles, 10543, 10616, 10641, 10589, 22088 of 34180 triangles, 10584, 22469
of 23268 triangles, 10579, 20217 of 20296 triangles, 10630, 10580, 20068 of
20680 triangles, 10621, 10627, 10632, 10649, 15741 of 17604 triangles, 10583,
15266 of 16324 triangles, 10612, 12006 of 22584 triangles, 10687, 10581, 14884
of 15916 triangles, 10673, 10623, 7544 of 15776 triangles, 10175, 10697,
10217, 10513, 13150 of 13580 triangles, 10626, 9666 of 20824 triangles, 10647,
15743 of 15744 triangles, 10213, 10358, 10625, 10622, 10633, 10459, 10436,
10663, 10215, 12579 of 12976 triangles, 10481, 9677, 9439 of 9896 triangles,
9478, 10591, 9468, 10643, 11873 of 15004 triangles, 10218, 3106 of 11636
triangles, 10220, 10682, 8524 of 9880 triangles, 10450, 10686, 7258 of 8376
triangles, 10678, 10435, 10620, 6617 of 7340 triangles, 10381, 6439 of 7240
triangles, 10619, 6981 of 7748 triangles, 10688, 5344 of 6836 triangles,
10448, 7208 of 7632 triangles, 10674, 6045 of 6920 triangles, 10675, 6211 of
6748 triangles, 10329, 6823 of 7036 triangles, 10527, 3766 of 6572 triangles,
10512, 6112 of 6172 triangles, 10669, 9665, 6740 of 6788 triangles, 9797,
10478, 6381 of 6724 triangles, 10101, 10477, 4227 of 5628 triangles, 10587,
9477, 10690, 9670, 10651, 10601, 10629, 10497, 10012, 10672, 9251, 10189,
9488, 1715 of 5268 triangles, 10588, 10251, 9686, 8678, 10574, 4559 of 11440
triangles, 1527, 3140, 9647, 3378 of 3608 triangles, 2383, 8209, 2097 of 2992
triangles, 10540, 1187, 10268, 10551, 10575, 10603, 10368, 10092, 2352 of 2484
triangles, 10415, 10676, 10573, 4746 of 4780 triangles, 9419, 10611, 10412,
10528, 10357, 10541, 10666, 10613, 10683, 9550, 10614, 10605, 10236, 10693,
10677, 10550, 9609, 10694, 9841, 10568, 10652, 10594, 10569, 2744 of 3204
triangles, 10462, 10671, 10609, 10610, 10310, 9350, 10595, 10600, 10341,
10565, 820 of 2364 triangles, 10137, 10636, 10578, 77 of 2016 triangles, 9150,
10394, 10639, 10248, 10437, 9438, 10571, 10602, 508 of 1372 triangles, 10405,
10416, 10390, 10606, 10638, 10653, 10401, 10572, 211 of 1504 triangles, 10409,
9928, 10468, 247 of 1248 triangles, 9783, 10350, 10518, 9211, 10010, 10262,
10495, 10661, 10539, 10311, 10306, 9831, 10655, 10546, 93 of 1100 triangles,
10570, 10644, 10418, 9952, 10270, 10685, 59 of 1192 triangles, 10667, 10470,
10668, 10052, 10544, 10701, 87 of 948 triangles, 10596, 10608, 10642, 10474,
10252, 10597, 10615, 10618, 390 of 1020 triangles, 10492, 10194, 100 of 780
triangles, 10692, 10577, 10457, 10425, 10210, 10186, 10420, 10205, 10645,
9530, 10598, 11, 854, 10363, 8009, 9964, 10267, 10204, 10187, 139, 10607, 107
of 552 triangles, 10354, 10208, 10657, 10659, 10576, 10471, 144 of 384
triangles, 9765, 9844, 10439, 10679, 9959, 10296, 314, 10637, 10493, 336 of
360 triangles, 10467, 10361, 10488, 10324, 100, 10033, 10427, 10355, 9551,
10624, 159 of 256 triangles, 74, 9857, 10307, 118, 576, 9172, 10198, 10670,
10684, 10424, 180 of 184 triangles, 10384, 3135, 3040, 84, 10097, 100 of 128
triangles, 9974, 10496, 88, 73, 3188, 10486, 3070, 2884, 3300, 3297, 3280,
324, 82, 3231, 3220, 3136, 3097, 10586, 6768 of 29920 triangles
Drag select of 10049, 5349 of 5888 triangles, 9481, 3998 of 4032 triangles,
10438, 60 of 376 triangles, 9344, 10664, 3166
> select #2.49
1 model selected
Ungrouped to 8 regions
> select #2.73
1 model selected
Ungrouped to 16 regions
> select #2.100
1 model selected
Ungrouped to 2 regions
Ungrouped to 0 regions
> select #2.118
1 model selected
> select add #2.73
2 models selected
> select add #2.1
3 models selected
> select #2.118
1 model selected
> select add #2.73
2 models selected
Grouped 2 regions
> select add #2.1
2 models selected
Grouped 2 regions
> select #2.21
1 model selected
> select #2.29
1 model selected
> select add #2.42
2 models selected
> select add #2.38
3 models selected
> select add #2.57
4 models selected
> select add #2.28
5 models selected
> select #2.23
1 model selected
> select #2.55
1 model selected
> select #2.4
1 model selected
> select add #2.78
2 models selected
> select add #2.76
3 models selected
> select add #2.65
4 models selected
> select add #2.71
5 models selected
> select add #2.31
6 models selected
Grouped 6 regions
> select clear
> select #2.60
1 model selected
> select add #2.4
2 models selected
> select add #2.70
3 models selected
> select add #2.49
4 models selected
> select add #2.94
5 models selected
> select add #2.95
6 models selected
> select add #2.112
7 models selected
> select add #2.87
8 models selected
> select add #2.84
9 models selected
> select add #2.64
10 models selected
> select add #2.46
11 models selected
> select add #2.24
12 models selected
> select add #2.125
13 models selected
> select add #2.124
14 models selected
> select add #2.115
15 models selected
> select add #2.82
16 models selected
Grouped 16 regions
> select #2.4
1 model selected
Showing 358 region surfaces
> select #2.4
1 model selected
Ungrouped to 16 regions
Ungrouped to 58 regions
> select #2.409
1 model selected
Ungrouped to 20 regions
> select #2.440
1 model selected
> select add #2.438
2 models selected
> select add #2.60
3 models selected
> select add #2.65
4 models selected
> select add #2.433
5 models selected
> select #2.406
1 model selected
Ungrouped to 6 regions
Ungrouped to 29 regions
Ungrouped to 26 regions
Ungrouped to 0 regions
> select #2.487
1 model selected
> select add #2.489
2 models selected
> select clear
Drag select of 3689, 3631, 3520, 3544, 3521, 3573, 9322, 9294, 7981, 8279,
3571, 3572, 3685, 3686, 7985, 7990, 8716, 8755, 8271, 4233, 7921, 7930, 7931,
3691, 3899, 3547, 7933, 7943, 3461, 3497, 3522, 3523, 3634, 3746, 3975, 4241,
10699, 10582, 10177, 9279, 9312, 4029, 9793, 9790, 9613, 9493, 9341, 3630,
3632, 3635, 3825, 10264, 10520, 10247, 10246, 9716, 3542, 3543, 3695, 4047,
3475, 3495, 9162, 10240, 9720, 9171, 9174, 10705, 10340, 9897, 9193, 9711,
9452, 4180, 9164, 9473, 8204, 3614, 3664, 3797, 4209, 3581, 3660, 3796, 3616,
3719, 3507, 3513, 3562, 3721, 3795, 3867, 3939, 3560, 3931, 3538, 3790, 3661,
3663, 3561, 3720, 3866, 3869, 3662, 4128, 3609, 3610, 3508, 3509, 3611, 3512,
3612, 4017, 3469, 3799, 3871, 3580, 4003, 3483
Grouped 119 regions
Showing 365 region surfaces
> select clear
> select #2.4
1 model selected
Opened Rev-dTV4-L0.18_imasked as #3, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> save /Users/shoichi/Desktop/ChimeraXdTV4/Segment/Disk.mrc models #3
Opened Rev-dTV4-L0.18_imasked as #4, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
Segmenting Rev-dTV4-L0.18_imasked, density threshold 0.033750
Showing 361 region surfaces
6445 watershed regions, grouped to 361 regions
Showing Rev-dTV4-L0.seg - 361 regions, 361 surfaces
> hide #!3 models
> hide #!4 models
> select #2.19
1 model selected
> select add #2.58
2 models selected
> select add #2.84
3 models selected
> select add #2.92
4 models selected
> select add #2.38
5 models selected
Grouped 5 regions
> select add #2.4
2 models selected
> select add #2.72
3 models selected
> select add #2.52
4 models selected
> select add #2.73
5 models selected
> select add #2.51
6 models selected
> select add #2.126
7 models selected
> select add #2.82
8 models selected
> select add #2.75
9 models selected
> select add #2.115
10 models selected
Grouped 10 regions
> select add #2.61
2 models selected
> select add #2.48
3 models selected
> select add #2.54
4 models selected
> select add #2.36
5 models selected
> select subtract #2.36
4 models selected
> select add #2.71
5 models selected
> select add #2.36
6 models selected
Grouped 6 regions
> select #2.3
1 model selected
Ungrouped to 6 regions
Ungrouped to 15 regions
Ungrouped to 35 regions
Ungrouped to 36 regions
Ungrouped to 0 regions
> select add #2.415
1 model selected
> select add #2.414
2 models selected
> select add #2.409
3 models selected
> select add #2.408
4 models selected
> select add #2.374
5 models selected
> select add #2.4
6 models selected
> select add #2.416
7 models selected
> select add #2.378
8 models selected
> select add #2.380
9 models selected
> select add #2.379
10 models selected
> select add #2.381
11 models selected
> select add #2.418
12 models selected
> select subtract #2.379
11 models selected
> select add #2.379
12 models selected
> select subtract #2.418
11 models selected
Grouped 11 regions
> select add #2.58
2 models selected
Grouped 2 regions
> select add #2.66
2 models selected
> select add #2.80
3 models selected
> select add #2.147
4 models selected
Grouped 4 regions
> select clear
> select #2.4
1 model selected
> show #!3 models
> hide #!3 models
Showing 395 region surfaces
Opened Rev-dTV4-L0_imasked as #5, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> save /Users/shoichi/Desktop/ChimeraXdTV4/Segment/Rods.mrc models #5
Opened Rev-dTV4-L0_imasked as #6, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
Segmenting Rev-dTV4-L0_imasked, density threshold 0.033750
Showing 341 region surfaces
5948 watershed regions, grouped to 341 regions
Showing Rev-dTV4-L0_imasked.seg - 341 regions, 341 surfaces
> hide #!5 models
> show #!5 models
> show #!3 models
> select #2.81
1 model selected
> select add #2.6
2 models selected
> select add #2.66
3 models selected
> select add #2.5
4 models selected
> select add #2.17
5 models selected
> select add #2.35
6 models selected
> select add #2.48
7 models selected
> select add #2.10
8 models selected
> select add #2.69
9 models selected
> select add #2.9
10 models selected
> select add #2.42
11 models selected
> select add #2.3
12 models selected
> select add #2.14
13 models selected
> select add #2.16
14 models selected
> select add #2.96
15 models selected
> select add #2.20
16 models selected
> select add #2.34
17 models selected
> select add #2.52
18 models selected
> select add #2.28
19 models selected
> select add #2.1
20 models selected
> select add #2.29
21 models selected
> select add #2.33
22 models selected
> select add #2.21
23 models selected
Grouped 23 regions
> select add #2.116
2 models selected
> select add #2.86
3 models selected
Grouped 3 regions
> select add #2.7
2 models selected
Grouped 2 regions
> select clear
> select #2.1
1 model selected
> hide #!5 models
> hide #!6 models
> select add #2.72
2 models selected
> select add #2.104
3 models selected
> select add #2.68
4 models selected
> select add #2.120
5 models selected
> select add #2.144
6 models selected
> select add #2.88
7 models selected
> select add #2.85
8 models selected
> select add #2.75
9 models selected
> select add #2.70
10 models selected
Grouped 10 regions
> hide #!3 models
> select clear
> select #2.1
1 model selected
Opened Rev-dTV4-L0_imasked_imasked as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> save /Users/shoichi/Desktop/ChimeraXdTV4/Segment/OM.mrc models #7
Opened Rev-dTV4-L0_imasked_imasked as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> hide #!7 models
> hide #!8 models
Segmenting Rev-dTV4-L0_imasked_imasked, density threshold 0.033750
Showing 306 region surfaces
3415 watershed regions, grouped to 306 regions
Showing Rev-dTV4-L0_imasked_imasked.seg - 306 regions, 306 surfaces
> select #2.58
1 model selected
> select #2.26
1 model selected
Ungrouped to 2 regions
Ungrouped to 11 regions
Ungrouped to 13 regions
Ungrouped to 0 regions
> select #2.58
1 model selected
> select add #2.327
2 models selected
> select add #2.314
3 models selected
> select add #2.318
4 models selected
> select add #2.57
5 models selected
Grouped 5 regions
> select add #2.326
2 models selected
> select add #2.11
3 models selected
> select add #2.51
4 models selected
> select add #2.12
5 models selected
> select add #2.47
6 models selected
> select add #2.14
7 models selected
> select add #2.46
8 models selected
> select add #2.23
9 models selected
> select add #2.53
10 models selected
> select add #2.20
11 models selected
> select add #2.65
12 models selected
Grouped 12 regions
> select #2.54
1 model selected
> select add #2.52
2 models selected
> select add #2.50
3 models selected
> select add #2.55
4 models selected
> select add #2.56
5 models selected
> select add #2.59
6 models selected
Grouped 6 regions
> select add #2.11
2 models selected
Grouped 2 regions
> select #2.19
1 model selected
Ungrouped to 2 regions
Ungrouped to 6 regions
> select #2.23
1 model selected
> select add #2.20
2 models selected
> select add #2.11
3 models selected
Grouped 3 regions
> select #2.15
1 model selected
> select add #2.5
2 models selected
> select add #2.9
3 models selected
Ungrouped to 17 regions
> select #2.12
1 model selected
> select add #2.11
2 models selected
> select add #2.58
3 models selected
Grouped 3 regions
> select #2.315
1 model selected
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 8 regions
> select #2.316
1 model selected
> select add #2.318
2 models selected
> select add #2.5
3 models selected
> select add #2.59
4 models selected
Grouped 4 regions
> select #2.2
1 model selected
Ungrouped to 30 regions
> select #2.355
1 model selected
> select add #2.5
2 models selected
Grouped 2 regions
> select clear
> select #2.2
1 model selected
Opened Rev-dTV4-L0_imasked_imasked_imasked as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> save /Users/shoichi/Desktop/ChimeraXdTV4/Segment/Peri.mrc models #9
Opened Rev-dTV4-L0_imasked_imasked_imasked as #10, grid size 160,160,200,
pixel 4.3,4.3,4.3, shown at step 1, values float32
> hide #!9 models
> hide #!10 models
> select #2.63
1 model selected
> select add #2.85
2 models selected
> select add #2.69
3 models selected
> select add #2.61
4 models selected
> select add #2.77
5 models selected
> select add #2.84
6 models selected
> select add #2.44
7 models selected
> select add #2.67
8 models selected
> select add #2.324
9 models selected
> select add #2.311
10 models selected
> select add #2.323
11 models selected
> select add #2.322
12 models selected
> select add #2.317
13 models selected
> select add #2.328
14 models selected
> select add #2.21
15 models selected
> select subtract #2.21
14 models selected
> select add #2.310
15 models selected
> select add #2.26
16 models selected
> select add #2.325
17 models selected
> select add #2.307
18 models selected
> select add #2.309
19 models selected
> select add #2.319
20 models selected
> select add #2.308
21 models selected
> select add #2.313
22 models selected
Grouped 22 regions
> select add #2.105
2 models selected
> select add #2.103
3 models selected
> select add #2.97
4 models selected
> select add #2.160
5 models selected
> select add #2.19
6 models selected
> select add #2.46
7 models selected
> select add #2.50
8 models selected
> select add #2.47
9 models selected
> select add #2.89
10 models selected
> select add #2.86
11 models selected
Grouped 11 regions
> select clear
Drag select of 4817, 4822, 3584 of 3612 triangles, 4826, 4089, 4341, 4660,
4197, 4805, 4881, 4821, 3313, 4553, 3320, 4896, 48 of 384 triangles, 4521, 49
of 396 triangles, 4918, 4889, 160 of 256 triangles, 3325, 4913, 17 of 212
triangles, 3288, 4766, 170 of 184 triangles, 3290, 4772, 28 of 116 triangles,
3306, 4530, 3229, 3296, 3232, 3180, 52 of 56 triangles, 3303, 3312
> select add #2.5
32 models selected
Grouped 32 regions
> select #2.39
1 model selected
Ungrouped to 2 regions
Ungrouped to 13 regions
> select #2.160
1 model selected
> select add #2.5
2 models selected
> select add #2.162
3 models selected
> select add #2.88
4 models selected
> select add #2.69
5 models selected
> select add #2.47
6 models selected
> select add #2.89
7 models selected
> select add #2.27
8 models selected
> select subtract #2.27
7 models selected
> select add #2.97
8 models selected
> select add #2.113
9 models selected
> select add #2.86
10 models selected
> select add #2.105
11 models selected
Grouped 11 regions
Drag select of 4804, 25 of 18888 triangles, 4797, 412 of 460 triangles, 4528,
48 of 292 triangles, 4919, 3294, 4476, 3295, 4915, 3118, 3139, 69 of 80
triangles, 4666, 2871, 17 of 56 triangles, 3213, 3286, 3088, 21 of 56
triangles
> select subtract #2.66
15 models selected
Grouped 15 regions
> select #2.72
1 model selected
> select add #2.98
2 models selected
> select add #2.104
3 models selected
> select add #2.71
4 models selected
> select add #2.120
5 models selected
> select add #2.110
6 models selected
> select add #2.96
7 models selected
> select add #2.99
8 models selected
> select add #2.130
9 models selected
> select add #2.93
10 models selected
> select add #2.95
11 models selected
> select add #2.92
12 models selected
> select add #2.107
13 models selected
> select add #2.127
14 models selected
> select add #2.101
15 models selected
Grouped 15 regions
> select #2.5
1 model selected
> select add #2.44
2 models selected
> select clear
Drag select of 4831, 185 of 4224 triangles, 4859, 366 of 3820 triangles, 4844,
1932 of 2968 triangles, 4842, 835 of 2312 triangles, 4731, 19 of 1608
triangles, 4836, 602 of 1592 triangles, 4285, 781 of 828 triangles, 4446, 20
of 636 triangles, 4905, 67 of 768 triangles, 4730, 521 of 616 triangles, 4607,
184 of 832 triangles, 4394, 4726, 84, 82, 52 of 56 triangles
Drag select of 4828, 740 of 8300 triangles, 4830, 326 of 5904 triangles, 4856,
12 of 4780 triangles, 4857, 956 of 4420 triangles, 4833, 49 of 3344 triangles,
4900, 176 of 3004 triangles, 4841, 1176 of 3568 triangles, 4902, 1821 of 3064
triangles, 4854, 224 of 2396 triangles, 4839, 562 of 2364 triangles, 4118, 58
of 1388 triangles, 4852, 1774 of 2124 triangles, 4878, 784 of 1864 triangles,
4699, 415 of 1444 triangles, 4894, 396 of 1680 triangles, 4829, 1074 of 1504
triangles, 4605, 1233 of 1272 triangles, 4300, 460 of 1056 triangles, 4754,
959 of 1376 triangles, 4769, 781 of 864 triangles, 4892, 4901, 340 of 872
triangles, 4591, 780 of 924 triangles, 4908, 116 of 948 triangles, 4845, 4623,
102 of 924 triangles, 4885, 609 of 744 triangles, 4834, 726 of 1020 triangles,
4589, 4586, 523 of 792 triangles, 4736, 324 of 708 triangles, 4840, 388 of 816
triangles, 4702, 449 of 804 triangles, 4904, 606 of 656 triangles, 4578, 139,
4738, 238 of 496 triangles, 4715, 345 of 416 triangles, 4728, 4720, 4788, 302
of 452 triangles, 314, 4721, 576, 140 of 176 triangles, 4916, 4719, 88
> select add #2.5
63 models selected
> select add #2.44
64 models selected
Grouped 64 regions
> select #2.5
1 model selected
> select add #2.80
2 models selected
> select add #2.79
3 models selected
> select add #2.76
4 models selected
> select add #2.70
5 models selected
Showing 211 region surfaces
Grouped 5 regions
Opened Rev-dTV4-L0_imasked_imasked_imasked as #11, grid size 160,160,200,
pixel 4.3,4.3,4.3, shown at step 1, values float32
Segmenting Rev-dTV4-L0_imasked_imasked_imasked, density threshold 0.033750
Showing 163 region surfaces
2319 watershed regions, grouped to 163 regions
Showing Rev-dTV4-L0_imasked_imasked_imasked.seg - 163 regions, 163 surfaces
Segmenting Rev-dTV4-L0_imasked_imasked_imasked, density threshold 0.033750
Showing 163 region surfaces
2319 watershed regions, grouped to 163 regions
Showing Rev-dTV4-L0_imasked_imasked_imasked.seg - 163 regions, 163 surfaces
> select #2.56
1 model selected
> select add #2.53
2 models selected
> select add #2.52
3 models selected
> select add #2.47
4 models selected
> select add #2.51
5 models selected
> select add #2.49
6 models selected
> select add #2.54
7 models selected
> hide #!2 models
> hide #!11 models
> show #!9 models
> hide #!9 models
> show #!11 models
> show #!2 models
> hide #!11 models
Grouped 7 regions
> select #2.43
1 model selected
> select add #2.60
2 models selected
> select add #2.19
3 models selected
> select add #2.5
4 models selected
> select subtract #2.5
3 models selected
> select add #2.23
4 models selected
> select add #2.14
5 models selected
> select add #2.12
6 models selected
> select add #2.11
7 models selected
> select add #2.63
8 models selected
> select add #2.47
9 models selected
Grouped 9 regions
> select #2.50
1 model selected
> select add #2.42
2 models selected
> select add #2.44
3 models selected
> select add #2.48
4 models selected
> select add #2.55
5 models selected
> select add #2.11
6 models selected
Grouped 6 regions
> select #2.11
1 model selected
> select clear
> select #2.9
1 model selected
> select add #2.5
2 models selected
> select add #2.15
3 models selected
Ungrouped to 17 regions
> select clear
> select #2.12
1 model selected
> select add #2.50
2 models selected
> select #2.50
1 model selected
Ungrouped to 2 regions
> select clear
> select #2.9
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
Showing 158 region surfaces
> select add #2.11
2 models selected
Grouped 2 regions
> select clear
> select #2.56
1 model selected
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
> select clear
> select #2.11
1 model selected
Showing 166 region surfaces
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.2
1 model selected
> select add #2.48
2 models selected
> select #2.48
1 model selected
> select #2.9
1 model selected
> select add #2.48
2 models selected
Grouped 2 regions
> select clear
> select #2.2
1 model selected
Ungrouped to 30 regions
> select #2.190
1 model selected
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.2
1 model selected
> select clear
> select #2.2
1 model selected
Opened Rev-dTV4-L0_imasked_imasked_imasked_imasked as #12, grid size
160,160,200, pixel 4.3,4.3,4.3, shown at step 1, values float32
> save /Users/shoichi/Desktop/ChimeraXdTV4/Segment/Peri.mrc models #12
Opened Rev-dTV4-L0_imasked_imasked_imasked_imasked as #13, grid size
160,160,200, pixel 4.3,4.3,4.3, shown at step 1, values float32
Segmenting Rev-dTV4-L0_imasked_imasked_imasked_imasked, density threshold
0.033750
Showing 146 region surfaces
2151 watershed regions, grouped to 146 regions
Showing Rev-dTV4-L0_imasked_imasked_imasked_imasked.seg - 146 regions, 146
surfaces
> hide #!12 models
> hide #!13 models
> select #2.2
1 model selected
> select add #2.6
2 models selected
> select add #2.7
3 models selected
> select add #2.8
4 models selected
> select add #2.15
5 models selected
> select add #2.26
6 models selected
Ungrouped to 48 regions
Ungrouped to 153 regions
Ungrouped to 329 regions
Ungrouped to 182 regions
Ungrouped to 0 regions
> select #2.208
1 model selected
> select add #2.195
2 models selected
> select add #2.210
3 models selected
> select add #2.209
4 models selected
> select add #2.196
5 models selected
> select add #2.674
6 models selected
> select add #2.670
7 models selected
> select add #2.675
8 models selected
> select add #2.589
9 models selected
> select add #2.206
10 models selected
> select add #2.207
11 models selected
> select add #2.580
12 models selected
> select add #2.581
13 models selected
Grouped 13 regions
> select #2.199
1 model selected
> select add #2.198
2 models selected
> select add #2.228
3 models selected
> select subtract #2.228
2 models selected
> select add #2.227
3 models selected
> select subtract #2.227
2 models selected
> select add #2.228
3 models selected
> select add #2.226
4 models selected
> select add #2.149
5 models selected
> select add #2.260
6 models selected
> select subtract #2.260
5 models selected
> select add #2.438
6 models selected
> select add #2.439
7 models selected
> select add #2.260
8 models selected
> select add #2.261
9 models selected
> select add #2.403
10 models selected
> select add #2.693
11 models selected
> select add #2.548
12 models selected
> select add #2.197
13 models selected
> select add #2.435
14 models selected
> select add #2.219
15 models selected
Grouped 15 regions
> select add #2.200
2 models selected
> select add #2.192
3 models selected
> select add #2.201
4 models selected
> select add #2.354
5 models selected
> select add #2.470
6 models selected
> select add #2.472
7 models selected
> select add #2.9
8 models selected
Grouped 8 regions
> select add #2.29
2 models selected
> select add #2.14
3 models selected
> select add #2.1
4 models selected
Grouped 4 regions
> select add #2.540
2 models selected
> select add #2.475
3 models selected
> select add #2.256
4 models selected
> select add #2.32
5 models selected
> select add #2.30
6 models selected
> select add #2.476
7 models selected
> select add #2.659
8 models selected
> select add #2.658
9 models selected
> select add #2.110
10 models selected
> select add #2.636
11 models selected
Grouped 11 regions
> select #2.331
1 model selected
> select add #2.332
2 models selected
> select add #2.465
3 models selected
> select add #2.467
4 models selected
> select add #2.330
5 models selected
> select add #2.333
6 models selected
> select add #2.394
7 models selected
> select add #2.334
8 models selected
> select add #2.4
9 models selected
> select add #2.1
10 models selected
> select add #2.395
11 models selected
Grouped 11 regions
> select #2.10
1 model selected
> select #2.10
1 model selected
> select add #2.11
2 models selected
Ungrouped to 8 regions
Ungrouped to 22 regions
> select #2.110
1 model selected
> select add #2.32
2 models selected
> select add #2.197
3 models selected
> select add #2.187
4 models selected
> select add #2.1
5 models selected
Grouped 5 regions
> select #2.31
1 model selected
> select add #2.40
2 models selected
> select add #2.53
3 models selected
> select add #2.34
4 models selected
> select add #2.1
5 models selected
Grouped 5 regions
> select add #2.55
2 models selected
Grouped 2 regions
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: Z11C000E4LL/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.121.1
OS Loader Version: 11881.121.1
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 16 days, 23 hours, 8 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LG HDR 4K:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 30.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 2 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 2 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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