Opened 2 months ago
Closed 2 months ago
#18447 closed defect (duplicate)
Error restoring session: self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values'
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Structure Editing | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open "D:\\\iHBUT\\\湖北工业大学\\\结构生物学\\\Cryo-EM\\\200KV-WD\\\p51 j45 align p51 > j46.cxs" Opened cryosparc_P51_J44_003_volume_map_sharp.mrc as #1, grid size 360,360,360, pixel 0.824, shown at level 0.0816, step 1, values float32 Opened cryosparc_P51_J45_004_volume_map_sharp.mrc as #2, grid size 360,360,360, pixel 0.824, shown at level 0.127, step 1, values float32 Opened cryosparc_P51_J45_004_volume_map_sharp.mrc z flip as #3, grid size 360,360,360, pixel 0.824, shown at level 0.13, step 1, values float32 Opened cryosparc_P51_J46_004_volume_map_sharp.mrc as #4, grid size 360,360,360, pixel 0.824, shown at level 0.125, step 1, values float32 Log from Wed Jun 25 16:17:47 2025 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/ybzair/Downloads/cryosparc_P51_J44_003_volume_map_sharp.mrc > format mrc Opened cryosparc_P51_J44_003_volume_map_sharp.mrc as #1, grid size 360,360,360, pixel 0.824, shown at level 0.0623, step 2, values float32 > open /Users/ybzair/Downloads/cryosparc_P51_J45_004_volume_map_sharp.mrc > format mrc Opened cryosparc_P51_J45_004_volume_map_sharp.mrc as #2, grid size 360,360,360, pixel 0.824, shown at level 0.0669, step 2, values float32 > volume #1 step 1 > volume #2 step 1 > volume #1 level 0.1219 > volume #2 level 0.1244 > ui mousemode right select > select #2 2 models selected > ui mousemode right "translate selected models" > view matrix models #2,1,0,0,-46.003,0,1,0,-84.632,0,0,1,-10.798 > ui mousemode right "rotate selected models" > view matrix models > #2,0.2587,0.60681,-0.75157,80.08,0.67082,0.44698,0.59178,-185.2,0.69503,-0.65726,-0.29143,176.55 > view matrix models > #2,0.13182,0.95306,-0.27256,-23.944,0.95216,-0.19822,-0.23259,-7.8898,-0.2757,-0.22886,-0.9336,346.96 > view matrix models > #2,-0.13203,0.8936,-0.42901,46.321,0.95909,0.22451,0.17247,-132.11,0.25044,-0.38869,-0.88668,287.74 > view matrix models > #2,0.22551,0.89173,-0.39239,-10.753,0.84776,-0.37807,-0.37198,54.893,-0.48006,-0.24876,-0.84122,366.16 > view matrix models > #2,0.49944,0.63737,-0.58679,16.325,0.22223,-0.7489,-0.62431,238.87,-0.83736,0.1814,-0.51567,305.43 > view matrix models > #2,0.09037,-0.44031,-0.89329,283.62,-0.76275,-0.60733,0.2222,236.78,-0.64035,0.66127,-0.39073,185.94 > ui tool show "Hide Dust" > surface dust #1 size 12 > surface dust #2 size 12 > view matrix models > #2,-0.79913,-0.57577,-0.17286,336.56,0.45549,-0.76758,0.45095,42.988,-0.39232,0.28164,0.87565,24.746 > view matrix models > #2,0.37535,0.22783,-0.89844,140.61,0.25968,-0.95635,-0.13402,184.52,-0.88976,-0.183,-0.41813,354.64 > view matrix models > #2,0.55957,-0.33983,-0.75591,177.59,-0.49172,-0.87032,0.027269,262.87,-0.66715,0.35644,-0.65411,273.36 > view matrix models > #2,0.90198,-0.35225,-0.2497,55.219,-0.42166,-0.84305,-0.33387,299.6,-0.092908,0.40643,-0.90894,214.85 > volume #2 level 0.208 > volume #2 level 0.1514 > view matrix models > #2,0.66145,-0.38147,-0.64573,152.01,-0.44015,-0.89456,0.077602,251.33,-0.60725,0.23289,-0.75961,296.22 > ui mousemode right "translate selected models" > ui mousemode right select > select #1 2 models selected > ui mousemode right "rotate selected models" > view matrix models > #1,0.067463,0.91184,0.40498,-54.459,-0.99743,0.05174,0.04966,268.37,0.024329,-0.40728,0.91298,66.538 > view matrix models > #1,-0.73449,0.36012,0.57519,112.75,-0.39536,-0.91596,0.068619,316.29,0.55156,-0.17701,0.81514,-26.764 > view matrix models > #1,-0.090148,0.93462,0.34404,-26.406,-0.93327,-0.19987,0.29842,258.64,0.34767,-0.29418,0.89027,7.8745 > view matrix models > #1,0.8481,0.46557,-0.25293,-7.3258,-0.48292,0.87563,-0.0075243,87.345,0.21797,0.12853,0.96746,-44.414 > view matrix models > #1,0.5349,-0.43979,-0.72143,232.72,0.16779,0.89214,-0.41945,52.11,0.82809,0.10331,0.55099,-67.335 > vop flip #2 Opened cryosparc_P51_J45_004_volume_map_sharp.mrc z flip as #3, grid size 360,360,360, pixel 0.824, shown at step 1, values float32 > surface dust #3 size 12 > view matrix models > #1,-0.30608,0.92288,-0.23369,89.71,0.95107,0.30728,-0.032163,-33.087,0.042125,-0.2321,-0.97178,312.48 > view matrix models > #1,-0.76522,0.59652,0.24209,132.09,0.63678,0.75663,0.14841,-77.843,-0.094642,0.26772,-0.95884,259.65 > view matrix models > #1,-0.85028,-0.52162,0.070234,326.65,-0.0057313,0.14261,0.98976,-21.822,-0.5263,0.84117,-0.12425,119.32 > view matrix models > #1,-0.80432,-0.32615,-0.49669,374.73,-0.59391,0.41498,0.68925,67.062,-0.018684,0.84936,-0.52748,104.36 > ui mousemode right select > select #3 2 models selected > ui mousemode right "translate selected models" > ui mousemode right "rotate selected models" > view matrix models > #3,0.61352,-0.63875,-0.46431,169.02,0.16662,-0.47003,0.86678,-23.009,-0.7719,-0.60916,-0.18194,355.54 > view matrix models > #3,0.85325,-0.44139,-0.27775,75.512,0.0059703,-0.52429,0.85152,11.4,-0.52147,-0.72822,-0.44471,375.67 > ui mousemode right "translate selected models" > view matrix models > #3,0.85325,-0.44139,-0.27775,110,0.0059703,-0.52429,0.85152,69.393,-0.52147,-0.72822,-0.44471,391.78 > view matrix models > #3,0.85325,-0.44139,-0.27775,117.97,0.0059703,-0.52429,0.85152,84.558,-0.52147,-0.72822,-0.44471,394.38 > ui mousemode right "translate selected models" > ui mousemode right "rotate selected models" > view matrix models > #3,0.7983,0.027503,-0.60163,107.3,0.55699,-0.41369,0.72016,5.7736,-0.22908,-0.91,-0.34557,361.86 > ui mousemode right "translate selected models" > view matrix models > #3,0.7983,0.027503,-0.60163,102.67,0.55699,-0.41369,0.72016,6.6795,-0.22908,-0.91,-0.34557,369.91 > ui tool show "Fit in Map" > fitmap #1 inMap #3 Fit map cryosparc_P51_J44_003_volume_map_sharp.mrc in map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip using 142844 points correlation = 0.5883, correlation about mean = 0.1002, overlap = 2311 steps = 88, shift = 1.75, angle = 4.94 degrees Position of cryosparc_P51_J44_003_volume_map_sharp.mrc (#1) relative to cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) coordinates: Matrix rotation and translation -0.94780003 -0.27729657 0.15742211 309.34241515 0.30676604 -0.92767179 0.21288411 204.15304989 0.08700402 0.25006332 0.96431252 -36.17645827 Axis 0.06307270 0.11946082 0.99083346 Axis point 140.36914031 127.74546927 0.00000000 Rotation angle (degrees) 162.85847322 Shift along axis 8.05450802 > fitmap #1 inMap #3 Fit map cryosparc_P51_J44_003_volume_map_sharp.mrc in map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip using 142844 points correlation = 0.5882, correlation about mean = 0.1002, overlap = 2311 steps = 40, shift = 0.00743, angle = 0.0401 degrees Position of cryosparc_P51_J44_003_volume_map_sharp.mrc (#1) relative to cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) coordinates: Matrix rotation and translation -0.94767051 -0.27789501 0.15714631 309.45389771 0.30729107 -0.92747423 0.21298767 204.03489072 0.08656094 0.25013179 0.96433464 -36.11917084 Axis 0.06289251 0.11951530 0.99083835 Axis point 140.39789505 127.73955113 0.00000000 Rotation angle (degrees) 162.82456457 Shift along axis 8.05936284 > volume #3 level 0.1945 > volume #3 level 0.1136 > ui mousemode right "rotate selected models" > view matrix models > #3,0.14954,0.36335,-0.91957,195.17,0.80829,0.49074,0.32535,-107.29,0.56948,-0.79193,-0.22031,215.91 > view matrix models > #3,-0.44506,0.2077,-0.87108,298.49,0.35901,0.93252,0.038918,-64.908,0.82039,-0.29541,-0.48959,144.83 > view matrix models > #3,-0.67435,-0.19085,-0.71332,368.54,-0.25786,0.96607,-0.014699,28.505,0.69192,0.17402,-0.70068,124.52 > view matrix models > #3,-0.58906,-0.36663,-0.72013,383.81,-0.63681,0.75922,0.13437,92.666,0.49747,0.53775,-0.6807,94.659 > view matrix models > #3,-0.024946,-0.44675,-0.89431,339.99,-0.81245,-0.5122,0.27853,289.62,-0.5825,0.73353,-0.35018,172.55 > view matrix models > #3,0.54308,-0.13573,-0.82864,199.52,0.81471,0.32407,0.48086,-106.65,0.20327,-0.93624,0.28658,214.05 > view matrix models > #3,0.039955,0.16786,-0.985,250.92,0.73666,0.66107,0.14254,-94.77,0.67508,-0.73131,-0.097242,172.44 > view matrix models > #3,0.063777,0.18881,-0.97994,243.48,0.79643,0.58207,0.16398,-94.789,0.60136,-0.79091,-0.11325,194.74 > open /Users/ybzair/Downloads/cryosparc_P51_J46_004_volume_map_sharp.mrc > format mrc Opened cryosparc_P51_J46_004_volume_map_sharp.mrc as #4, grid size 360,360,360, pixel 0.824, shown at level 0.0667, step 2, values float32 > volume #4 step 1 > volume #4 level 0.1195 > surface dust #4 size 12 > ui mousemode right select > select #4 2 models selected > ui mousemode right "translate selected models" > view matrix models #4,1,0,0,2.2204e-16,0,1,0,-2.2204e-16,0,0,1,0 > view matrix models #4,1,0,0,37.932,0,1,0,56.887,0,0,1,-42.576 > ui mousemode right "rotate selected models" > view matrix models > #4,0.45925,0.21791,-0.86116,214.6,-0.72081,-0.47516,-0.50463,456.93,-0.51915,0.85249,-0.061146,67.077 > view matrix models > #4,0.71367,0.27252,-0.6453,137.35,0.30389,-0.95046,-0.065313,316.8,-0.63113,-0.14949,-0.76113,341.58 > view matrix models > #4,0.19527,0.89487,-0.40134,78.597,0.95083,-0.07242,0.30114,37.989,0.24042,-0.44041,-0.86501,279.6 > view matrix models > #4,0.45178,0.22031,-0.8645,215.8,-0.096163,-0.95136,-0.2927,408.12,-0.88693,0.21537,-0.40862,267.87 > view matrix models > #4,0.03561,0.7061,-0.70721,176.69,0.99862,0.0022613,0.05254,58.753,0.038698,-0.70811,-0.70504,323.02 > view matrix models > #4,-0.095953,0.52904,-0.84315,242.71,0.82684,0.51398,0.2284,-21.245,0.5542,-0.67523,-0.48675,212.2 > view matrix models > #4,-0.083711,0.51242,-0.85464,245.28,0.87653,0.44584,0.18146,-10.682,0.47402,-0.73393,-0.48647,232.14 > volume #4 level 0.1353 > volume #3 level 0.1298 > view matrix models > #4,-0.20367,0.59794,-0.77523,238.23,-0.40489,0.66949,0.62277,79.469,0.89139,0.44073,0.10574,-96.413 > view matrix models > #4,-0.15026,0.1817,-0.97181,322.47,-0.96967,0.1646,0.18071,307.43,0.19279,0.96948,0.15146,-77.403 > view matrix models > #4,0.16294,0.096939,-0.98186,289.73,-0.65016,-0.73798,-0.18075,449.57,-0.74212,0.66782,-0.057219,139.61 > view matrix models > #4,0.59691,0.41716,-0.68533,131.31,0.63671,-0.76603,0.088282,219.44,-0.48816,-0.48906,-0.72286,376.45 > view matrix models > #4,0.26113,0.77382,-0.57708,111.86,0.74445,0.21913,0.6307,-26.94,0.6145,-0.5943,-0.51884,195.42 > ui mousemode right "translate selected models" > view matrix models > #4,0.26113,0.77382,-0.57708,99.448,0.74445,0.21913,0.6307,-13.336,0.6145,-0.5943,-0.51884,187.52 > view matrix models > #4,0.26113,0.77382,-0.57708,91.242,0.74445,0.21913,0.6307,-16.85,0.6145,-0.5943,-0.51884,188.88 > ui mousemode right "rotate selected models" > view matrix models > #4,0.063865,0.33432,0.94029,-49.315,0.057127,0.93945,-0.3379,129.33,-0.99632,0.075296,0.040899,243.81 > view matrix models > #4,0.53287,-0.17227,0.82848,-27.005,0.062501,0.9844,0.16449,43.956,-0.84389,-0.035872,0.53532,160.82 > ui mousemode right "translate selected models" > view matrix models > #4,0.53287,-0.17227,0.82848,-29.216,0.062501,0.9844,0.16449,-12.522,-0.84389,-0.035872,0.53532,155.86 > view matrix models > #4,0.53287,-0.17227,0.82848,-85.086,0.062501,0.9844,0.16449,-94.96,-0.84389,-0.035872,0.53532,184.38 > view matrix models > #4,0.53287,-0.17227,0.82848,-77.86,0.062501,0.9844,0.16449,-109.29,-0.84389,-0.035872,0.53532,176.09 > view matrix models > #4,0.53287,-0.17227,0.82848,-81.728,0.062501,0.9844,0.16449,-107.18,-0.84389,-0.035872,0.53532,178.9 > view matrix models > #4,0.53287,-0.17227,0.82848,-88.883,0.062501,0.9844,0.16449,-116.29,-0.84389,-0.035872,0.53532,177 > view matrix models > #4,0.53287,-0.17227,0.82848,-87.004,0.062501,0.9844,0.16449,-113.96,-0.84389,-0.035872,0.53532,174.61 > ui mousemode right "rotate selected models" > view matrix models > #4,-0.97087,0.1465,0.18963,189.79,-0.23714,-0.4737,-0.84816,304.22,-0.034428,-0.86842,0.49464,183.3 > view matrix models > #4,-0.97876,0.10992,0.17303,198.97,-0.20499,-0.53032,-0.82265,303.85,0.0013385,-0.84064,0.54159,166.55 > view matrix models > #4,-0.98049,0.092787,0.1733,201.73,-0.19002,-0.6731,-0.71472,306.06,0.050332,-0.7337,0.6776,122.26 > view matrix models > #4,-0.92957,0.17812,0.32276,158.27,-0.3508,-0.69653,-0.62593,319.83,0.11332,-0.69507,0.70996,102.08 > ui tool show "Fit in Map" > fitmap #2 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 102836 points correlation = 0.7705, correlation about mean = 0.2878, overlap = 2779 steps = 100, shift = 4.77, angle = 6.51 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc (#2) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation -0.61126410 0.66592743 0.42766441 74.10552021 0.79048591 0.48738249 0.37093171 -98.93143272 0.03857745 0.56479993 -0.82432567 188.02377438 Axis 0.42871860 0.86042372 0.27544760 Axis point 74.24265155 0.00000000 104.87056903 Rotation angle (degrees) 166.93231497 Shift along axis -1.56183907 > volume #4 level 0.1274 > volume #3 level 0.2188 > volume #2 level 0.1163 > volume #4 level 0.1274 > volume #2 level 0.08932 > volume #4 level 0.09572 > volume #4 level 0.09836 > ui mousemode right "translate selected models" > ui mousemode right select > select clear > select #1 2 models selected > ui mousemode right "translate selected models" > view matrix models > #1,-0.80015,-0.39784,-0.44886,378.36,-0.59263,0.40903,0.69389,-11.053,-0.092457,0.82123,-0.56306,72.893 > volume #3 level 0.1999 > volume #3 level 0.1541 > view matrix models > #1,-0.80015,-0.39784,-0.44886,386.8,-0.59263,0.40903,0.69389,56.911,-0.092457,0.82123,-0.56306,115.53 > view matrix models > #1,-0.80015,-0.39784,-0.44886,375.8,-0.59263,0.40903,0.69389,59.687,-0.092457,0.82123,-0.56306,125.97 > ui mousemode right "rotate selected models" > view matrix models > #1,-0.26171,-0.5012,-0.82481,368.22,-0.5601,-0.6171,0.5527,220.11,-0.786,0.60662,-0.11922,190.58 > view matrix models > #1,-0.084667,-0.24617,-0.96552,327.48,-0.28337,-0.92304,0.26019,266.23,-0.95527,0.29563,0.0083924,240 > ui mousemode right "move picked models" > view matrix models > #3,0.063777,0.18881,-0.97994,246.24,0.79643,0.58207,0.16398,-95.064,0.60136,-0.79091,-0.11325,189.58 > view matrix models > #1,-0.084667,-0.24617,-0.96552,326.55,-0.28337,-0.92304,0.26019,274.2,-0.95527,0.29563,0.0083924,235 > view matrix models > #3,0.063777,0.18881,-0.97994,245.74,0.79643,0.58207,0.16398,-94.902,0.60136,-0.79091,-0.11325,191.8 > view matrix models > #3,0.063777,0.18881,-0.97994,244.81,0.79643,0.58207,0.16398,-97.614,0.60136,-0.79091,-0.11325,191.86 > ui tool show "Fit in Map" > fitmap #1 inMap #3 Fit map cryosparc_P51_J44_003_volume_map_sharp.mrc in map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip using 142844 points correlation = 0.8549, correlation about mean = 0.513, overlap = 4477 steps = 140, shift = 7.56, angle = 10.9 degrees Position of cryosparc_P51_J44_003_volume_map_sharp.mrc (#1) relative to cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) coordinates: Matrix rotation and translation -0.85527508 -0.43929168 0.27482244 297.97941525 0.45059199 -0.89240251 -0.02417886 218.40768276 0.25587381 0.10315322 0.96119093 -45.29349360 Axis 0.14161429 0.02107401 0.98969757 Axis point 126.03347144 145.40022755 0.00000000 Rotation angle (degrees) 153.28367439 Shift along axis 1.97400827 > volume #3 level 0.1271 > volume #1 level 0.1192 > ui mousemode right select > select #4 2 models selected > ui mousemode right "rotate selected models" Drag select of 4 cryosparc_P51_J46_004_volume_map_sharp.mrc > ui mousemode right "translate selected models" > view matrix models > #4,-0.92957,0.17812,0.32276,178.49,-0.3508,-0.69653,-0.62593,332.23,0.11332,-0.69507,0.70996,100.87 > ui mousemode right "rotate selected models" > view matrix models > #4,0.23425,0.039745,-0.97136,239.48,0.37351,-0.92616,0.052179,160.46,-0.89756,-0.37504,-0.2318,339.95 > view matrix models > #4,0.61517,0.49701,-0.612,60.151,0.61518,0.18288,0.76688,-154.81,0.49307,-0.84826,-0.19325,212.44 > view matrix models > #4,0.36311,0.34821,-0.86423,157.51,0.81075,0.33903,0.47724,-160.77,0.45918,-0.87396,-0.15921,215.79 > view matrix models > #4,0.3416,0.50371,-0.79346,125.63,0.75037,0.36218,0.55296,-167.73,0.56591,-0.78428,-0.25426,202.01 > ui mousemode right "translate selected models" > view matrix models > #4,0.3416,0.50371,-0.79346,135.17,0.75037,0.36218,0.55296,-133.42,0.56591,-0.78428,-0.25426,197.45 > view matrix models > #4,0.3416,0.50371,-0.79346,147.98,0.75037,0.36218,0.55296,-128.39,0.56591,-0.78428,-0.25426,206.71 > view matrix models > #4,0.3416,0.50371,-0.79346,146.38,0.75037,0.36218,0.55296,-120,0.56591,-0.78428,-0.25426,209.68 > view matrix models > #4,0.3416,0.50371,-0.79346,147.8,0.75037,0.36218,0.55296,-122.93,0.56591,-0.78428,-0.25426,210.42 > view matrix models > #4,0.3416,0.50371,-0.79346,141.1,0.75037,0.36218,0.55296,-182.04,0.56591,-0.78428,-0.25426,161.2 > volume #4 level 0.1247 > view matrix models > #4,0.3416,0.50371,-0.79346,140.41,0.75037,0.36218,0.55296,-115.96,0.56591,-0.78428,-0.25426,210.8 > view matrix models > #4,0.3416,0.50371,-0.79346,157.43,0.75037,0.36218,0.55296,-113.07,0.56591,-0.78428,-0.25426,131.95 > view matrix models > #4,0.3416,0.50371,-0.79346,143.15,0.75037,0.36218,0.55296,-83.116,0.56591,-0.78428,-0.25426,163.82 > view matrix models > #4,0.3416,0.50371,-0.79346,147.21,0.75037,0.36218,0.55296,-104.41,0.56591,-0.78428,-0.25426,213.26 > view matrix models > #4,0.3416,0.50371,-0.79346,138.12,0.75037,0.36218,0.55296,-108.75,0.56591,-0.78428,-0.25426,212.04 > ui mousemode right "rotate selected models" > view matrix models > #4,-0.12533,0.20647,-0.97039,275.6,-0.41974,0.87522,0.24043,26.875,0.89895,0.43744,-0.023025,-53.702 > view matrix models > #4,-0.16452,0.43953,-0.88303,232.48,-0.37028,0.80224,0.4683,-4.8286,0.91424,0.40401,0.03077,-59.264 > view matrix models > #4,-0.3848,0.53591,-0.75149,228.19,0.020748,0.81899,0.57343,-78.443,0.92277,0.20506,-0.32626,25.314 > view matrix models > #4,-0.1489,0.44892,-0.88108,228.58,-0.16833,0.8665,0.46994,-42.921,0.97442,0.21828,-0.053459,-26.651 > ui tool show "Fit in Map" > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.137, overlap = 2096 steps = 128, shift = 3.03, angle = 7.37 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33584687 -0.94077625 -0.04633482 251.24481938 0.88038337 0.33101503 -0.33963828 18.33655243 0.33486115 0.07327405 0.93941414 -43.34139984 Axis 0.21665028 -0.20000908 0.95554122 Axis point 116.07683586 182.96197535 0.00000000 Rotation angle (degrees) 72.35382242 Shift along axis 9.35029032 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.137, overlap = 2096 steps = 48, shift = 0.00891, angle = 0.00768 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33595869 -0.94073403 -0.04638136 251.23621045 0.88035339 0.33113852 -0.33959561 18.31019436 0.33482781 0.07325811 0.93942726 -43.33612324 Axis 0.21662852 -0.20002430 0.95554297 Axis point 116.08786432 182.96666028 0.00000000 Rotation angle (degrees) 72.34635326 Shift along axis 9.35291713 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.137, overlap = 2096 steps = 28, shift = 0.0187, angle = 0.0145 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33574314 -0.94081343 -0.04633176 251.26501003 0.88040069 0.33091266 -0.33969315 18.36776170 0.33491964 0.07325914 0.93939445 -43.33662462 Axis 0.21666308 -0.20003063 0.95553381 Axis point 116.06509451 182.97022805 0.00000000 Rotation angle (degrees) 72.36060978 Shift along axis 9.35612720 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.1371, overlap = 2096 steps = 44, shift = 0.00962, angle = 0.016 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33589100 -0.94074963 -0.04655482 251.27634430 0.88030848 0.33112279 -0.33972734 18.35152764 0.33501374 0.07312876 0.93937105 -43.32333503 Axis 0.21662472 -0.20020821 0.95550531 Axis point 116.07489521 183.00483706 0.00000000 Rotation angle (degrees) 72.35055121 Shift along axis 9.36286318 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.137, overlap = 2096 steps = 44, shift = 0.0164, angle = 0.0125 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33587670 -0.94076431 -0.04636098 251.24572194 0.88036982 0.33105172 -0.33963765 18.32949058 0.33486686 0.07326156 0.93941307 -43.34042033 Axis 0.21664577 -0.20002799 0.95553829 Axis point 116.08127973 182.96557076 0.00000000 Rotation angle (degrees) 72.35185461 Shift along axis 9.35147992 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.1371, overlap = 2096 steps = 40, shift = 0.0157, angle = 0.00816 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33581516 -0.94078184 -0.04645107 251.27142374 0.88034961 0.33101750 -0.33972336 18.36252941 0.33498169 0.07319108 0.93937763 -43.33054290 Axis 0.21664901 -0.20013112 0.95551595 Axis point 116.06838793 182.98904886 0.00000000 Rotation angle (degrees) 72.35579894 Shift along axis 9.35976776 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.137, overlap = 2096 steps = 40, shift = 0.00426, angle = 0.00543 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33587817 -0.94076135 -0.04641038 251.25064118 0.88035145 0.33106703 -0.33967035 18.34533333 0.33491369 0.07323041 0.93939881 -43.33326978 Axis 0.21664667 -0.20007856 0.95552749 Axis point 116.07050226 182.97812112 0.00000000 Rotation angle (degrees) 72.35177894 Shift along axis 9.35597705 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.137, overlap = 2096 steps = 44, shift = 0.0053, angle = 0.0141 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33565996 -0.94084078 -0.04637893 251.28865399 0.88040249 0.33084585 -0.33975355 18.38795071 0.33499827 0.07320953 0.93937028 -43.33461726 Axis 0.21666245 -0.20009082 0.95552135 Axis point 116.06276598 182.98090196 0.00000000 Rotation angle (degrees) 72.36584551 Shift along axis 9.35840456 > fitmap #3 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 150658 points correlation = 0.5844, correlation about mean = 0.1371, overlap = 2096 steps = 40, shift = 0.00492, angle = 0.0126 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.33583717 -0.94077221 -0.04648701 251.27326997 0.88034013 0.33105070 -0.33971560 18.35793954 0.33498456 0.07316475 0.93937866 -43.32733082 Axis 0.21663316 -0.20015337 0.95551489 Axis point 116.07125783 182.99372331 0.00000000 Rotation angle (degrees) 72.35410815 Shift along axis 9.35980944 > fitmap #1 inMap #4 Fit map cryosparc_P51_J44_003_volume_map_sharp.mrc in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 149543 points correlation = 0.6299, correlation about mean = 0.1873, overlap = 2317 steps = 308, shift = 6.18, angle = 21.2 degrees Position of cryosparc_P51_J44_003_volume_map_sharp.mrc (#1) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation -0.55192560 0.72492528 0.41214252 58.49024127 -0.79287993 -0.60929731 0.00990989 350.69951526 0.25830126 -0.32131001 0.91106549 33.12661736 Axis -0.21216765 0.09854523 -0.97225188 Axis point 112.50363351 163.10767982 0.00000000 Rotation angle (degrees) 128.68796467 Shift along axis -10.05739045 > fitmap #1 inMap #4 Fit map cryosparc_P51_J44_003_volume_map_sharp.mrc in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 149543 points correlation = 0.63, correlation about mean = 0.1871, overlap = 2317 steps = 40, shift = 0.0752, angle = 0.0524 degrees Position of cryosparc_P51_J44_003_volume_map_sharp.mrc (#1) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation -0.55166782 0.72465058 0.41296991 58.37659507 -0.79287041 -0.60930804 0.01001121 350.71615848 0.25888052 -0.32190876 0.91068964 33.11922454 Axis -0.21263015 0.09871069 -0.97213405 Axis point 112.44351415 163.14408984 0.00000000 Rotation angle (degrees) 128.69269192 Shift along axis -9.98951480 > undo [Repeated 6 time(s)] > fitmap #1 inMap #3 Fit map cryosparc_P51_J44_003_volume_map_sharp.mrc in map cryosparc_P51_J45_004_volume_map_sharp.mrc z flip using 149543 points correlation = 0.8532, correlation about mean = 0.5147, overlap = 4547 steps = 172, shift = 5.44, angle = 22.5 degrees Position of cryosparc_P51_J44_003_volume_map_sharp.mrc (#1) relative to cryosparc_P51_J45_004_volume_map_sharp.mrc z flip (#3) coordinates: Matrix rotation and translation -0.85515700 -0.43934775 0.27510010 297.93188344 0.45066213 -0.89236511 -0.02425202 218.40219103 0.25614480 0.10323792 0.96110966 -45.34441410 Axis 0.14176661 0.02107797 0.98967568 Axis point 126.01215649 145.39990134 0.00000000 Rotation angle (degrees) 153.27894644 Shift along axis 1.96400457 > volume #3 level 0.1136 > volume #1 level 0.1058 > volume #1 level 0.0467 > volume #3 level 0.1298 > volume #1 level 0.0816 > save "/Users/ybzair/Desktop/p51 j44 align p51 j45.cxs" includeMaps true > view matrix models > #4,0.71096,-0.07719,-0.69899,178.02,0.4901,-0.65843,0.5712,73.281,-0.50433,-0.74867,-0.43028,303.72 > ui mousemode right "translate selected models" > view matrix models > #4,0.71096,-0.07719,-0.69899,162.89,0.4901,-0.65843,0.5712,74.139,-0.50433,-0.74867,-0.43028,376.11 > ui mousemode right "rotate selected models" > view matrix models > #4,0.69844,0.022152,-0.71532,152.32,0.66592,-0.38626,0.63824,-1.6931,-0.26216,-0.92212,-0.28453,345.4 > view matrix models > #4,0.37528,-0.19303,-0.90659,259.68,0.022648,-0.97587,0.21716,242.49,-0.92664,-0.10203,-0.36185,327.53 > view matrix models > #4,0.086073,-0.12638,-0.98824,302.9,-0.4732,-0.87808,0.071081,320.01,-0.87674,0.46152,-0.13538,200.65 > ui mousemode right "translate selected models" > view matrix models > #4,0.086073,-0.12638,-0.98824,306.09,-0.4732,-0.87808,0.071081,320.26,-0.87674,0.46152,-0.13538,224.53 > view matrix models > #4,0.086073,-0.12638,-0.98824,300.53,-0.4732,-0.87808,0.071081,323.52,-0.87674,0.46152,-0.13538,232.74 > ui mousemode right "rotate selected models" > view matrix models > #4,-0.13702,-0.31273,-0.93991,352.02,-0.80476,-0.5181,0.28971,281.65,-0.57757,0.79609,-0.18068,147.94 > view matrix models > #4,-0.41627,0.49872,-0.76026,241.34,0.0016449,0.83656,0.54788,-74.352,0.90924,0.22682,-0.34906,51.896 > view matrix models > #4,-0.42582,0.51251,-0.74566,238.32,0.0085845,0.82636,0.56308,-76.178,0.90477,0.23337,-0.35628,52.672 > ui mousemode right "translate selected models" > view matrix models > #4,-0.42582,0.51251,-0.74566,239.51,0.0085845,0.82636,0.56308,-85.05,0.90477,0.23337,-0.35628,38.649 > view matrix models > #4,-0.42582,0.51251,-0.74566,238.17,0.0085845,0.82636,0.56308,-83.918,0.90477,0.23337,-0.35628,38.486 > ui mousemode right "rotate selected models" > view matrix models > #4,0.044277,0.79881,-0.59995,106.78,0.99059,0.042731,0.13,-35.844,0.12948,-0.60006,-0.78941,339.51 > view matrix models > #4,-0.25249,0.70667,-0.66096,171.6,0.65259,0.62871,0.4229,-122.3,0.7144,-0.32456,-0.61991,189.97 > view matrix models > #4,-0.35065,0.62691,-0.69572,202.71,0.60585,0.71835,0.34194,-116.51,0.71414,-0.3016,-0.6317,188.41 > view matrix models > #4,0.19694,0.75063,-0.63069,97.491,0.88185,0.14548,0.44852,-85.979,0.42843,-0.64451,-0.63329,279.93 > view matrix models > #4,-0.11923,0.67784,-0.72548,167.42,0.59388,0.63425,0.495,-126.24,0.79567,-0.37183,-0.47818,163.47 > view matrix models > #4,-0.16043,0.75406,-0.63692,147.88,0.66785,0.55806,0.49248,-124.76,0.7268,-0.34636,-0.59313,187.3 > view matrix models > #4,-0.2344,0.70074,-0.67381,171.98,0.38235,0.70371,0.59883,-123.37,0.89379,-0.11727,-0.43288,104.54 > view matrix models > #4,-0.21455,0.60933,-0.76334,196.93,0.096822,0.79096,0.60416,-97.383,0.9719,0.055715,-0.2287,35.711 > view matrix models > #4,-0.37419,0.59876,-0.70815,212.16,-0.014575,0.75973,0.65008,-84.343,0.92724,0.25357,-0.27556,19.665 > view matrix models > #4,0.033636,0.75857,-0.65072,122.25,0.96549,0.14357,0.21727,-61.123,0.25824,-0.63558,-0.72757,317.14 > view matrix models > #4,-0.57979,-0.79434,-0.1813,366.92,0.49344,-0.16526,-0.85393,219.01,0.64835,-0.58457,0.48778,64.473 > ui mousemode right "translate selected models" > view matrix models > #4,-0.57979,-0.79434,-0.1813,394.64,0.49344,-0.16526,-0.85393,233.02,0.64835,-0.58457,0.48778,65.402 > volume #2 level 0.1109 > ui mousemode right "rotate selected models" > view matrix models > #4,-0.46683,0.6543,0.59495,40.214,-0.7061,0.12928,-0.69621,331.75,-0.53244,-0.74511,0.40165,267.9 > view matrix models > #4,-0.26834,0.85055,0.45228,5.4637,-0.91361,-0.075817,-0.39947,344.94,-0.30548,-0.5204,0.79741,140.49 > view matrix models > #4,0.80051,0.50491,0.32287,-71.797,-0.48705,0.86201,-0.14045,104.29,-0.34924,-0.044823,0.93596,53.66 > view matrix models > #4,0.9889,-0.11011,0.099813,28.964,0.11454,0.99262,-0.039836,-15.084,-0.09469,0.050826,0.99421,-5.3543 > view matrix models > #4,0.87894,0.36214,0.31036,-59.409,-0.361,0.93041,-0.063284,64.339,-0.31168,-0.056417,0.94851,48.183 > ui mousemode right "translate selected models" > view matrix models > #4,0.87894,0.36214,0.31036,-133.72,-0.361,0.93041,-0.063284,19.054,-0.31168,-0.056417,0.94851,45.218 > view matrix models > #4,0.87894,0.36214,0.31036,-135.51,-0.361,0.93041,-0.063284,0.89301,-0.31168,-0.056417,0.94851,26.929 > view matrix models > #4,0.87894,0.36214,0.31036,-126.53,-0.361,0.93041,-0.063284,2.1715,-0.31168,-0.056417,0.94851,28.696 > ui mousemode right "translate selected models" > ui mousemode right "rotate selected models" > view matrix models > #4,0.65676,0.61325,0.43885,-153.25,-0.53824,0.78881,-0.29678,84.744,-0.52817,-0.041294,0.84814,72.41 > view matrix models > #4,0.78554,0.5262,0.32564,-140.45,-0.51057,0.84846,-0.1394,47.271,-0.34965,-0.05676,0.93516,36.145 > ui tool show "Fit in Map" > fitmap #2 inMap #4 Fit map cryosparc_P51_J45_004_volume_map_sharp.mrc in map cryosparc_P51_J46_004_volume_map_sharp.mrc using 199306 points correlation = 0.7834, correlation about mean = 0.3732, overlap = 4012 steps = 144, shift = 8.97, angle = 12.3 degrees Position of cryosparc_P51_J45_004_volume_map_sharp.mrc (#2) relative to cryosparc_P51_J46_004_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99268441 0.07042920 -0.09806822 3.79469643 0.06669609 -0.99693709 -0.04084207 289.65143813 -0.10064433 0.03400252 -0.99434126 310.36826148 Axis 0.99816878 0.03435630 -0.04978678 Axis point 0.00000000 141.84585328 158.00008328 Rotation angle (degrees) 177.85142351 Shift along axis -1.71313580 > volume #2 level 0.1028 > volume #4 level 0.09572 > volume #2 level 0.1244 > volume #4 level 0.1247 [Repeated 1 time(s)] > volume #2 level 0.1271 > save "/Users/ybzair/Desktop/p51 j45 align p51 j46.cxs" includeMaps true ——— End of log from Wed Jun 25 16:17:47 2025 ——— opened ChimeraX session > open "D:\iHBUT\湖北工业大学\结构生物学\Cryo-EM\200KV-WD\p51 j45 align p51 j46.cxs" > format session Unable to restore session, resetting. Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest self._callback(info) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept return interceptor(request_info, *args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 353, in intercept chimerax_intercept(*args, view=view, session=session) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir) File "D:\UCSF Chimera\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 364, in thread_safe func(*args, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 446, in defer cxcmd(session, topic) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd run(session, cmd) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 458, in collated_open return remember_data_format() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 26, in open return cxs_open(session, data, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 1004, in open session.restore(stream, path=path, resize_window=resize_window) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 742, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' AttributeError: 'list' object has no attribute 'values' File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): See log for complete Python traceback. > open "D:\iHBUT\湖北工业大学\结构生物学\Cryo-EM\200KV-WD\p51 j45 align p51 j46.cxs" > format session Unable to restore session, resetting. Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest self._callback(info) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept return interceptor(request_info, *args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 353, in intercept chimerax_intercept(*args, view=view, session=session) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir) File "D:\UCSF Chimera\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 364, in thread_safe func(*args, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 446, in defer cxcmd(session, topic) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd run(session, cmd) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 458, in collated_open return remember_data_format() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 26, in open return cxs_open(session, data, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 1004, in open session.restore(stream, path=path, resize_window=resize_window) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 742, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' AttributeError: 'list' object has no attribute 'values' File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): See log for complete Python traceback. > open "D:\iHBUT\湖北工业大学\结构生物学\Cryo-EM\200KV-WD\p51 j45 align p51 j46.cxs" > format session Unable to restore session, resetting. Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest self._callback(info) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept return interceptor(request_info, *args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 353, in intercept chimerax_intercept(*args, view=view, session=session) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir) File "D:\UCSF Chimera\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 364, in thread_safe func(*args, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 446, in defer cxcmd(session, topic) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd run(session, cmd) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 458, in collated_open return remember_data_format() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 26, in open return cxs_open(session, data, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 1004, in open session.restore(stream, path=path, resize_window=resize_window) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 742, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' AttributeError: 'list' object has no attribute 'values' File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): See log for complete Python traceback. > open "D:\iHBUT\湖北工业大学\结构生物学\Cryo-EM\200KV-WD\p51 j45 align p51 j46.cxs" > format session Unable to restore session, resetting. Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest self._callback(info) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept return interceptor(request_info, *args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 353, in intercept chimerax_intercept(*args, view=view, session=session) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir) File "D:\UCSF Chimera\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 364, in thread_safe func(*args, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 446, in defer cxcmd(session, topic) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd run(session, cmd) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 458, in collated_open return remember_data_format() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 26, in open return cxs_open(session, data, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 1004, in open session.restore(stream, path=path, resize_window=resize_window) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 742, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' AttributeError: 'list' object has no attribute 'values' File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): See log for complete Python traceback. > open "D:\iHBUT\湖北工业大学\结构生物学\Cryo-EM\200KV-WD\p51 j45 align p51 j46.cxs" > format session Unable to restore session, resetting. Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 700, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest self._callback(info) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept return interceptor(request_info, *args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 353, in intercept chimerax_intercept(*args, view=view, session=session) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir) File "D:\UCSF Chimera\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 364, in thread_safe func(*args, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 446, in defer cxcmd(session, topic) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd run(session, cmd) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 458, in collated_open return remember_data_format() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 26, in open return cxs_open(session, data, **kw) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 1004, in open session.restore(stream, path=path, resize_window=resize_window) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 742, in restore self.reset() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 541, in reset sm.reset_state(container, self) File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 149, in reset_state self.clear() File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' AttributeError: 'list' object has no attribute 'values' File "D:\UCSF Chimera\ChimeraX\bin\lib\site- packages\chimerax\bond_rot\manager.py", line 45, in delete_all_rotations for rotater in self.bond_rotaters.values(): See log for complete Python traceback. OpenGL version: 3.3.0 Core Profile Context 23.10.24.02.230811 OpenGL renderer: AMD Radeon(TM) Graphics OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: zh_CN.cp936 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: windows Manufacturer: LENOVO Model: 82SN OS: Microsoft Windows 11 家庭中文版 (Build 26100) Memory: 14,702,026,752 MaxProcessMemory: 137,438,953,344 CPU: 16 AMD Ryzen 7 6800H with Radeon Graphics OSLanguage: zh-CN Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2022.9.24 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 comtypes: 1.1.10 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pywin32: 303 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 WMI: 1.5.1 zipp: 3.11.0
Change History (2)
comment:1 by , 2 months ago
Component: | Unassigned → Structure Editing |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Error restoring session: self.bond_rotaters.values(): AttributeError: 'list' object has no attribute 'values' |
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In old ChimeraX 1.5.