![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jun 9, 2023:
- 7:35 PM Ticket #9161 (Crash showing Rapid Access at startup) created by
- […]
- 4:57 PM ChangeLog edited by
- (diff)
- 4:54 PM Ticket #6703 (Chimera-like selection behavior for left/right arrow keys) closed by
- fixed: Made the left/right arrow keys invert the selection. This differs …
- 4:50 PM Ticket #9153 (PyQt no longer accepting previously acceptable arguments) closed by
- fixed: There were …
- 3:42 PM Ticket #9160 (Error contacting toolshed for updates) created by
- […]
- 2:50 PM Ticket #9159 (MemoryError open mmCIF) created by
- […]
- 12:31 PM Ticket #9158 (2dlabels arrow with bad args causes huge memory usage) created by
- I didn't know the limits on the 2dlabels arrow command are [0,1] for …
- 11:55 AM Ticket #9156 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:54 AM Ticket #9155 (Crash in garbage collection while importing networkx for alphafold pae) closed by
- can't reproduce: This isn't related to networkx or alphafold pae. The alphafold PAE …
- 11:48 AM Ticket #9152 (glClear: invalid operation) closed by
- nonchimerax: If ChimeraX fails to start every time then this is almost surely a …
- 11:03 AM Ticket #9154 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:34 AM Ticket #9157 (Daily build does not start on Mac) created by
- On my Intel Mac (12.6.6), clicking on the icon produces no window and …
- 10:10 AM Ticket #9156 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) created by
- […]
- 9:49 AM Ticket #9155 (Crash in garbage collection while importing networkx for alphafold pae) created by
- […]
- 9:29 AM Ticket #9149 (Show chain sequence: TypeError: __init__() got an unexpected keyword ...) closed by
- duplicate: Hi Jack, Thanks for reporting this problem. It was fixed about 5 …
- 6:15 AM Ticket #9154 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:07 AM Ticket #9153 (PyQt no longer accepting previously acceptable arguments) created by
- […]
- 2:44 AM Ticket #9152 (glClear: invalid operation) created by
- […]
Jun 8, 2023:
- 11:59 PM Ticket #9151 (KeyError handling AlphaFold predict Blast results) created by
- […]
- 10:19 PM Ticket #9150 (MemoryError open mmCIF) created by
- […]
- 9:38 PM Ticket #9149 (Show chain sequence: TypeError: __init__() got an unexpected keyword ...) created by
- […]
- 7:00 PM 2023-6-8 edited by
- (diff)
- 6:38 PM Ticket #9148 (Daily build Mac notarization failed after update to Python 3.11) closed by
- fixed: Fixed I think. I changed the notarize.py script to sign ".o" files …
- 5:56 PM Ticket #9148 (Daily build Mac notarization failed after update to Python 3.11) created by
- Notarization of the Mac arm, intel and universal daily builds failed …
- 3:52 PM 2023-6-8 edited by
- (diff)
- 3:09 PM Ticket #9146 (Crash at exit) closed by
- can't reproduce
- 3:07 PM Ticket #9145 (Hbonds: More than 2 coplanar positions specified) closed by
- can't reproduce
- 3:01 PM Ticket #9143 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) closed by
- can't reproduce: 1.3
- 1:59 PM NIAID2023 edited by
- (diff)
- 1:58 PM NIAID2023 edited by
- (diff)
- 12:51 PM Ticket #9147 (dicom view zooming should use zoom mousemode assignment) created by
- as discussed in the meeting today, it may be a good idea to make the …
- 8:28 AM Ticket #9146 (Crash at exit) created by
- […]
- 3:20 AM Ticket #9145 (Hbonds: More than 2 coplanar positions specified) created by
- […]
Jun 7, 2023:
- 11:27 PM Ticket #9144 (Crash in event loop) created by
- […]
- 4:04 PM Dev2023-6-12 edited by
- (diff)
- 3:03 PM Ticket #9143 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 1:45 PM ChangeLog edited by
- (diff)
- 1:44 PM ChangeLog edited by
- (diff)
- 11:05 AM Dev2023-6-12 edited by
- (diff)
- 9:34 AM Ticket #9142 (Running cx_unified.py standalone) closed by
- nonchimerax
- 9:08 AM Ticket #9139 (Re: [chimerax-users] ChimeraX not able to install for ubuntu22) closed by
- duplicate: Follow up to #9138
- 9:07 AM Ticket #9138 (ChimeraX not able to install for ubuntu22) closed by
- duplicate: Asked and answered on chimerax-users
- 8:08 AM Ticket #9142 (Running cx_unified.py standalone) created by
- […]
- 7:39 AM Ticket #9141 (Crash hiding tool) created by
- […]
- 5:38 AM Ticket #9140 (ISOLDE: OpenMMException: Error initializing context: clCreateContext) created by
- […]
- 3:14 AM Ticket #9139 (Re: [chimerax-users] ChimeraX not able to install for ubuntu22) created by
- […]
Jun 6, 2023:
- 8:57 PM Ticket #9138 (ChimeraX not able to install for ubuntu22) created by
- […] Screenshot from 2023-06-07 09-24-10.png
- 6:59 PM Ticket #9137 (MemoryError open mmCIF) created by
- […]
- 3:37 PM Ticket #9015 (Download DICOM: visual indicator in tool that loading is occurring) closed by
- fixed: Instead of putting that text in the status line, …
- 2:48 PM Ticket #9028 (Python311: Wayland required but PyOpenGL EGL backend gives bad background) closed by
- fixed: For the Python 3.11 update, we make PyOpenGL use its x11 backend to …
- 1:43 PM Ticket #9068 (qtconsole receives QContextMenuEvents when volume data context menu used) closed by
- fixed: Fixed. Worked around the Qt/PyQt bug by removing all references to …
- 12:50 PM Ticket #9135 (Volume histogram: cannot convert float NaN to integer) closed by
- nonchimerax: The HDF5 volume data file contained NaN values.
- 11:18 AM Ticket #2071 (Undockable settings; wider entry fields) closed by
- fixed: Preferences panel now undockable. Fix: …
- 11:02 AM Ticket #2939 (Iconify main window does not iconify other windows) closed by
- fixed: Has been fixed for awhile now.
- 10:47 AM Ticket #9134 (Crash in Windows Management Instrumentation module) closed by
- can't reproduce
- 10:45 AM Ticket #9133 (Crash in Windows Management Instrumentation module) closed by
- can't reproduce
- 10:16 AM Ticket #9131 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac with dual displays
- 10:04 AM Ticket #9136 (Can't login to Trac from Chrome on Windows) created by
- Begin forwarded message: From: Tristan Croll Subject: Re: Locked out …
- 10:01 AM Dev2023-6-12 created by
- 9:59 AM DeveloperMeetings edited by
- (diff)
- 9:58 AM 2023-6-8 created by
- 9:58 AM DeveloperMeetings edited by
- (diff)
- 8:10 AM Ticket #9127 (ISOLDE: a couple of errors) closed by
-
can't reproduce: The first exception is extremely perplexing - the "HIP"
Platformis … - 8:06 AM Ticket #9135 (Volume histogram: cannot convert float NaN to integer) created by
- […]
- 7:44 AM Ticket #9134 (Crash in Windows Management Instrumentation module) created by
- […]
- 7:44 AM Ticket #9133 (Crash in Windows Management Instrumentation module) created by
- […]
- 6:34 AM Ticket #9115 (ISOLDE: various problems) closed by
- fixed: Fixed in the 1.6 release. The OpenMM 8.0.0beta used in the dev builds …
Jun 5, 2023:
- 10:49 PM Ticket #9132 (MemoryError open mmCIF) created by
- […]
- 5:20 PM Ticket #9119 (Add CSV export to blastprotein table) closed by
- fixed: I've implemented TSV support instead, because a lot of the values that …
- 4:18 PM Dev2022-6-5 edited by
- (diff)
- 4:16 PM Dev2022-6-5 edited by
- (diff)
- 4:08 PM Ticket #9131 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:31 PM Ticket #9129 (Crash adding bond in AddH) closed by
- can't reproduce
- 2:30 PM Ticket #9130 (Early "Drill down to studies" crashes) created by
- […]
- 2:18 PM Ticket #9129 (Crash adding bond in AddH) created by
- […]
- 11:59 AM Ticket #9128 (Allow naming AlphaFold prediction model when job is started) created by
- On Jun 5, 2023, at 11:51 AM, James Raymond wrote: Thank you. I am …
- 11:51 AM Dev2022-6-5 edited by
- (diff)
- 11:47 AM Ticket #9123 (glClear: invalid framebuffer operation) closed by
- duplicate: Duplicate of #9122.
- 11:46 AM Ticket #9122 (glClear: invalid framebuffer operation) closed by
- nonchimerax: Looks like an Apple Intel graphics problem, on macOS 12.6.5 released …
- 11:29 AM Ticket #9126 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:27 AM Ticket #9125 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:22 AM Ticket #9124 (Crash handling text input) closed by
- can't reproduce
- 12:46 AM Ticket #9127 (ISOLDE: a couple of errors) created by
- […]
Jun 4, 2023:
Jun 3, 2023:
- 7:25 AM Ticket #9125 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:57 AM Ticket #9124 (Crash handling text input) created by
- […]
Jun 2, 2023:
- 9:18 PM Ticket #9123 (glClear: invalid framebuffer operation) created by
- […]
- 9:18 PM Ticket #9122 (glClear: invalid framebuffer operation) created by
- […]
- 6:01 PM Ticket #9121 (test) closed by
- not a bug
- 6:00 PM Ticket #9121 (test) created by
- […]
- 5:56 PM Ticket #9066 (Tickets made with email2trac do not produce a new ticket email from ...) closed by
- fixed
- 5:46 PM Ticket #9120 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 4:22 PM Ticket #9120 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:47 PM Ticket #9119 (Add CSV export to blastprotein table) created by
- 1:43 PM Ticket #8992 (TCIA DICOM has empty axes) closed by
- fixed: Missed a path through the DICOM code where an empty axis could be …
- 11:24 AM Ticket #9108 (Show map when showing Model) closed by
- not a bug: That works. Unfortunately allow hierarchies of models where models at …
- 11:09 AM Ticket #9110 (Hiding/showing model changes lighting) closed by
- limitation: You are using the "soft" lighting mode which approximates ambient …
- 10:43 AM Ticket #9118 (QOpenGLContext::makeCurrent() called with non-opengl surface) closed by
- nonchimerax: Looks like a graphics driver problem. Appears that Qt can't use OpenGL.
- 10:24 AM Ticket #9117 (Chain not in match maps) closed by
- can't reproduce: Would need the session file.
- 10:19 AM Ticket #9111 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: "Qt fatal error: Failed to initialize graphics backend for OpenGL." …
- 9:43 AM Ticket #9116 (Crash in QFileDialog.__init__) closed by
- can't reproduce
- 9:33 AM Ticket #9114 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 8:51 AM Ticket #9118 (QOpenGLContext::makeCurrent() called with non-opengl surface) created by
- […]
- 8:39 AM Ticket #9117 (Chain not in match maps) created by
- […]
- 6:35 AM Ticket #9116 (Crash in QFileDialog.__init__) created by
- […]
- 1:15 AM Ticket #9115 (ISOLDE: various problems) created by
- […]
- 12:17 AM Ticket #9114 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jun 1, 2023:
- 9:51 PM Ticket #9113 (MemoryError open mmCIF) created by
- […] 2bbv.cif
- 9:18 PM Ticket #9112 (Crash at startup) created by
- […]
- 7:10 PM Ticket #9111 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:21 PM Ticket #9110 (Hiding/showing model changes lighting) created by
- […] [attachment:"2023-06-01 bug report session ponatinib and …
- 4:45 PM ChangeLog edited by
- (diff)
- 12:34 PM Ticket #9109 (Unknown crash) closed by
- can't reproduce
- 12:24 PM 2023-6-1 edited by
- (diff)
- 9:57 AM Ticket #9109 (Unknown crash) created by
- […]
- 8:27 AM Ticket #9108 (Show map when showing Model) created by
- […]
May 31, 2023:
- 4:51 PM phenix-6-1-23 edited by
- (diff)
- 2:14 PM phenix-6-1-23 edited by
- (diff)
- 2:14 PM phenix-6-1-23 edited by
- (diff)
- 2:05 PM phenix-6-1-23 edited by
- (diff)
- 1:58 PM phenix-6-1-23 edited by
- (diff)
- 1:39 PM Ticket #9107 (ISOLDE unparameterized validation tab: 'NoneType' object has no ...) created by
- […]
- 1:37 PM phenix-6-1-23 created by
- 1:37 PM Features edited by
- (diff)
- 1:12 PM Ticket #9105 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 12:13 PM Ticket #9106 (Crash opening mmCIF) created by
- […]
- 11:46 AM Ticket #9105 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 10:54 AM Ticket #9104 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) closed by
- duplicate: This error was fixed more than a year ago. Get the current ChimeraX …
- 10:21 AM Ticket #9104 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) created by
- […]
- 9:51 AM Ticket #9103 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 9:49 AM Ticket #9102 (Crash in event loop) closed by
- can't reproduce
- 9:44 AM Ticket #9101 (Error restoring session) closed by
- can't reproduce
- 9:41 AM Ticket #9100 (Crash in event loop) closed by
- can't reproduce
- 9:37 AM Ticket #9099 (Unknown crash) closed by
- can't reproduce
- 9:07 AM Ticket #9103 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:42 AM Ticket #9102 (Crash in event loop) created by
- […]
- 1:38 AM Ticket #9101 (Error restoring session) created by
- […]
- 12:07 AM Ticket #9100 (Crash in event loop) created by
- […]
May 30, 2023:
- 9:01 PM Ticket #9099 (Unknown crash) created by
- […]
- 1:28 PM Ticket #9092 (MemoryError saving maps in sessions) closed by
- fixed: Fixed. Add clear error message when out of memory saving session …
- 1:18 PM Ticket #9098 (MemoryError open mmCIF) closed by
- duplicate
- 12:42 PM Ticket #9069 (fitmap: mismatch coordinate array sizes) closed by
- fixed: Fixed. User fit atoms into a map with moveWholeMolecules false, then …
- 12:42 PM Ticket #9098 (MemoryError open mmCIF) created by
- […]
- 12:11 PM Ticket #9097 (Download DICOM: impatiently clicking "Drill down" twice crashes ChimeraX) created by
- Could be considered "user error" I guess, so reclassify as you see …
- 11:48 AM Ticket #9079 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:46 AM Ticket #9078 (AlphaFold sequence search web service failed (500) "Internal Server Error") closed by
- fixed: Fixed. Thanks for reporting the problem. The AlphaFold search …
- 11:20 AM 2023-5-25 edited by
- (diff)
- 11:06 AM Dev2022-6-5 created by
- 11:05 AM 2023-6-1 created by
- 11:04 AM DeveloperMeetings edited by
- (diff)
- 10:54 AM Ticket #9096 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Dual displays
- 10:20 AM Ticket #9070 (Blast: self.job.model_name is None) closed by
- fixed: It's harmless if this line fails and the try... block around it …
- 9:42 AM Ticket #9094 (Crash drawing QTabBar) closed by
- can't reproduce
- 9:37 AM Ticket #9093 (Unknown crash) closed by
- can't reproduce
- 9:31 AM Ticket #9091 (Crash handling text input) closed by
- can't reproduce
- 9:22 AM Ticket #9089 (Unknown crash) closed by
- can't reproduce
- 9:21 AM Ticket #9088 (Unknown crash) closed by
- can't reproduce
- 9:19 AM Ticket #9087 (Unknown crash) closed by
- can't reproduce
- 9:09 AM Ticket #9086 (Session restore: invalid load key) closed by
- duplicate
- 9:08 AM Ticket #9085 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:07 AM Ticket #9084 (Session restore: invalid load key) closed by
- duplicate
- 9:06 AM Ticket #9083 (Session restore: invalid load key) closed by
- duplicate
- 9:04 AM Ticket #9082 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:55 AM Ticket #9081 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:53 AM Ticket #9080 (Crash creating QWebEngineProfile at startup) closed by
- duplicate
- 8:44 AM Ticket #9075 (Some kind of crash handling text input) closed by
- can't reproduce
- 8:32 AM Ticket #9073 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 8:26 AM Ticket #9071 (Unknown crash) closed by
- can't reproduce
- 6:52 AM Ticket #9096 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:51 AM Ticket #9095 (XMAS: crash in ~QGridLayout()) created by
- […]
- 3:39 AM Ticket #9094 (Crash drawing QTabBar) created by
- […]
May 29, 2023:
- 11:31 PM Ticket #9093 (Unknown crash) created by
- […]
- 7:34 PM Ticket #9092 (MemoryError saving maps in sessions) created by
- […]
- 1:15 PM Ticket #9091 (Crash handling text input) created by
- […]
- 11:19 AM Ticket #9090 (Unable to restore "SchemesManager" object) created by
- […]
- 4:05 AM Ticket #9089 (Unknown crash) created by
- […]
May 28, 2023:
- 10:19 PM Ticket #9088 (Unknown crash) created by
- […]
- 10:17 PM Ticket #9087 (Unknown crash) created by
- […]
- 7:41 AM Ticket #9086 (Session restore: invalid load key) created by
- […]
- 7:28 AM Ticket #9085 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:27 AM Ticket #9084 (Session restore: invalid load key) created by
- […]
- 7:25 AM Ticket #9083 (Session restore: invalid load key) created by
- […]
- 12:35 AM Ticket #9082 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:04 AM Ticket #9081 (Crash using File→Open on Windows and/or in return statement) created by
- […]
May 27, 2023:
- 4:55 PM Ticket #9080 (Crash creating QWebEngineProfile at startup) created by
- […]
- 4:54 PM Ticket #9079 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 645) created by
- […]
- 4:07 PM Ticket #9078 (AlphaFold sequence search web service failed (500) "Internal Server Error") created by
- […]
May 26, 2023:
- 6:15 PM Ticket #9077 (Port volume filter user interface from Chimera) closed by
- fixed: Done. I called the new tool "Map Filter" instead of "Volume Filter". …
- 6:12 PM Ticket #9077 (Port volume filter user interface from Chimera) created by
- Mike mentioned in the May 19, 2023 SLAC cryoEM workshop that the …
- 3:57 PM Ticket #9076 (volume gaussian filtering sometimes causes 0.5 voxel shift) closed by
- fixed: Fixed. Problem was the array for the 1D Gaussian usually had a even …
- 2:30 PM ChangeLog edited by
- (diff)
- 2:07 PM Ticket #9076 (volume gaussian filtering sometimes causes 0.5 voxel shift) created by
- […]
- 12:01 PM Ticket #9075 (Some kind of crash handling text input) created by
- […]
- 10:50 AM Ticket #9074 (ChimeraX bug report submission) closed by
- duplicate: Duplicate of #9068
- 10:47 AM Ticket #9074 (ChimeraX bug report submission) created by
- […]
- 10:47 AM Ticket #9073 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 10:47 AM Ticket #9072 (Cannot load symbols from atomic library) created by
- […]
- 10:47 AM Ticket #9071 (Unknown crash) created by
- […]
- 10:47 AM Ticket #9070 (Blast: self.job.model_name is None) created by
- […]
- 10:47 AM Ticket #9069 (fitmap: mismatch coordinate array sizes) created by
- […]
- 9:40 AM Ticket #9068 (qtconsole receives QContextMenuEvents when volume data context menu used) created by
- To reproduce: Open one of the RIDER Lung CTs (I used series 8), …
May 25, 2023:
- 7:11 PM Ticket #9067 (ChimeraX bug report submission) closed by
- nonchimerax
- 7:09 PM Ticket #9067 (ChimeraX bug report submission) created by
- […]
- 6:52 PM Ticket #9066 (Tickets made with email2trac do not produce a new ticket email from ...) created by
- When a bug is submitted using ChimeraX Report a Bug or by emailing …
- 6:47 PM Ticket #9065 (email2trac does not include description when reporter is notified) created by
- With the new email2trac updated in the past week new tickets submitted …
- 6:42 PM Ticket #9064 (ChimeraX bug report submission) closed by
- nonchimerax
- 6:38 PM Ticket #9064 (ChimeraX bug report submission) created by
- […] neuron.png
- 6:36 PM Ticket #9063 (Test of Trac email) closed by
- not a bug
- 6:35 PM Ticket #9061 (Checking Trac email) closed by
- not a bug
- 6:32 PM Ticket #9060 (Test Trac email to reporter) closed by
- not a bug
- 6:23 PM Ticket #9062 (ChimeraX bug report submission) closed by
- not a bug
- 6:22 PM Ticket #9059 (ChimeraX bug report submission) closed by
- not a bug
- 6:22 PM Ticket #9063 (Test of Trac email) created by
- […]
- 6:22 PM Ticket #9056 (ChimeraX bug report submission) closed by
- not a bug
- 6:20 PM Ticket #9062 (ChimeraX bug report submission) created by
- […]
- 6:16 PM Ticket #9061 (Checking Trac email) created by
- […]
- 5:58 PM Ticket #9060 (Test Trac email to reporter) created by
- See if Trac email to reporter includes the description field when I …
- 5:26 PM Ticket #9059 (ChimeraX bug report submission) created by
- […]
- 5:19 PM Ticket #9058 (ChimeraX bug report submission) closed by
- not a bug
- 5:18 PM Ticket #9058 (ChimeraX bug report submission) created by
- […]
- 5:17 PM Ticket #9057 (ChimeraX bug report submission) closed by
- not a bug
- 5:14 PM Ticket #9057 (ChimeraX bug report submission) created by
- […]
- 5:06 PM Ticket #9056 (ChimeraX bug report submission) created by
- […]
- 5:02 PM Ticket #9053 (ChimeraX bug report submission) closed by
- not a bug
- 5:02 PM Ticket #9055 (ChimeraX bug report submission) closed by
- not a bug
- 5:01 PM Ticket #9054 (ChimeraX bug report submission) closed by
- not a bug
- 4:56 PM Ticket #9055 (ChimeraX bug report submission) created by
- […]
- 4:54 PM Ticket #9054 (ChimeraX bug report submission) created by
- […]
- 4:40 PM Ticket #9053 (ChimeraX bug report submission) created by
- […]
- 3:36 PM WebJobInfo edited by
- (diff)
- 3:23 PM WebJobInfo edited by
- (diff)
- 3:23 PM WebJobInfo edited by
- (diff)
- 3:23 PM WebJobInfo edited by
- (diff)
- 2:32 PM Ticket #9052 (test bug) closed by
- fixed
- 2:31 PM Ticket #9052 (test bug) created by
- […]
- 2:03 PM NIAID2023 edited by
- (diff)
- 1:35 PM NIAID2023 edited by
- (diff)
- 12:55 PM NIAID2023 edited by
- (diff)
- 10:33 AM Ticket #9039 (Problem assigning attributes) closed by
- fixed: That's great news! --Eric Since run_email2trac isn't working, …
May 24, 2023:
- 4:10 PM Ticket #9050 ("volume flip" fails when inPlace is true) closed by
- fixed: Fixed. I guess that ported code was never used since n/2 gives an …
- 4:08 PM Ticket #9016 (Download DICOM: column-width adjustment seems wrong in Collections list) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/7c368df52b0d2f45ff5cfbce50a624 …
- 3:51 PM Ticket #8986 (Download DICOM: Expanding flag on "Dataset" column breaks intuition ...) closed by
- duplicate: Now #9016
- 3:51 PM Ticket #9017 (Download DICOM: initial sort is reverse alphabetical (Z->A)) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c7fa44b465ef5d99d99db9eac33cf1 …
- 3:24 PM Ticket #9051 (another bug) closed by
- fixed
- 3:23 PM Ticket #9051 (another bug) created by
- […]
- 2:32 PM Ticket #9050 ("volume flip" fails when inPlace is true) created by
-
Works fine for
inPlace false. volume flip #1 axis y inPlace true … - 2:10 PM Ticket #7101 (Memory leak opening and closing atomic models) closed by
- fixed: Fixed another leak (in residues.uniq_sequences) where I was again …
- 1:52 PM Ticket #9049 (ChimeraX hung at startup for several minutes querying Toolshed) created by
- Linux ChimeraX hung at startup on minsky.cgl.ucsf.edu apparently …
- 10:19 AM Ticket #9048 (Make web page dashboard showing ISOLDE downloads) created by
- Some weird new bot behaviour on the toolshed... haven't checked if …
May 23, 2023:
- 5:18 PM Ticket #9045 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) closed by
- duplicate: This error was fixed about a year ago, bug #7103. You can update to …
- 4:42 PM Ticket #9046 (Crash in event loop) closed by
- can't reproduce
- 4:38 PM Ticket #9044 (Alt locs vs. coordinate sets) closed by
- limitation: Hi Tristan, In ChimeraX it's either alt locs or coordinate sets, but …
- 4:31 PM Ticket #9042 (Crash in event loop) closed by
- can't reproduce
- 3:30 PM Ticket #9037 (Toolshed fetch failure) closed by
- can't reproduce: Undoubtedly server-upgrade-related issue.
- 12:14 PM Ticket #3282 (Add mcopy command) closed by
- fixed: Done. I added the mcopy command to copy colors, styles, visibility... …
- 10:00 AM Ticket #9036 (Session restore: invalid load key) closed by
- duplicate
- 9:58 AM Ticket #9035 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce
- 9:28 AM Dev2022-5-29 created by
- 9:27 AM Dev2022-5-22 edited by
- (diff)
- 9:26 AM 2023-5-25 created by
- 9:25 AM 2023-5-18 edited by
- (diff)
- 9:25 AM DeveloperMeetings edited by
- (diff)
May 22, 2023:
- 4:27 PM Ticket #9033 (Session restore: invalid load key) closed by
- duplicate
- 4:14 PM Dev2022-5-22 edited by
- (diff)
- 1:40 PM Ticket #9047 (Web services down due to bad certificate) created by
- […]
- 12:55 PM Ticket #9031 (Session restore: invalid load key) closed by
- duplicate
- 10:17 AM Ticket #9046 (Crash in event loop) created by
- […]
- 10:09 AM Ticket #9045 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) created by
- […]
- 9:51 AM Ticket #9044 (Alt locs vs. coordinate sets) created by
- […] trajectory_inbound.pdb
- 6:56 AM Ticket #9043 (Web services down due to bad certificate) created by
- […]
- 5:35 AM Ticket #9042 (Crash in event loop) created by
- […]
May 20, 2023:
- 10:11 PM Ticket #9041 (Translate IUPAC names) created by
- […]
- 9:02 PM Ticket #9040 (Session restore: No module named 'lz4._version') created by
- […]
- 6:20 AM Ticket #9039 (Problem assigning attributes) created by
- […] aflog10.defattr
May 19, 2023:
- 5:15 PM Ticket #9038 (back/forward arrow selection keys) created by
- […]
- 1:12 PM Ticket #9037 (Toolshed fetch failure) created by
- […]
- 11:39 AM Ticket #9036 (Session restore: invalid load key) created by
- […]
- 6:50 AM Ticket #9035 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:36 AM Ticket #9034 (MemoryError open mmCIF) created by
- […]
May 18, 2023:
- 9:46 PM Ticket #9033 (Session restore: invalid load key) created by
- […]
- 9:01 PM Ticket #9032 ([ChimeraX 1.6.1] The log class seems to be not functioning, in the ...) created by
- […] [[Image(...)]] …
- 8:25 PM Ticket #9031 (Session restore: invalid load key) created by
- […]
- 6:45 PM Ticket #9030 (Crash in event loop) created by
- […]
- 3:11 PM 2023-5-18 edited by
- (diff)
- 2:40 PM Ticket #9029 (Crash moving dock widget) closed by
- can't reproduce
- 2:33 PM Ticket #9029 (Crash moving dock widget) created by
- […]
- 2:20 PM Ticket #9025 (Issue with 'jax' module when opening .pkl files in ChimeraX) closed by
- fixed: You are right ChimeraX has its own Python environment. But you don't …
- 2:20 PM Ticket #9027 (Unknown crash) closed by
- can't reproduce
- 2:19 PM Ticket #9028 (Python311: Wayland required but PyOpenGL EGL backend gives bad background) created by
- I built a Python 3.11 version of ChimeraX on Ubuntu 22.04, and on …
- 2:08 PM Ticket #9024 (UnicodeDecodeError opening PDB file) closed by
- can't reproduce: Would need the furin.pdb in order to debug.
- 1:53 PM 2023-5-18 edited by
- (diff)
- 12:34 PM Ticket #9027 (Unknown crash) created by
- […]
- 11:25 AM ProteinScience2024 edited by
- (diff)
- 11:25 AM ProteinScience2024 created by
- 10:54 AM Ticket #9026 (Site down) created by
- […]
- 10:47 AM Ticket #9025 (Issue with 'jax' module when opening .pkl files in ChimeraX) created by
- […]
May 16, 2023:
- 6:24 PM Ticket #9024 (UnicodeDecodeError opening PDB file) created by
- […]
- 2:59 PM Ticket #9023 (Possible remote display crash) created by
- […]
- 2:13 PM Ticket #8825 (Session restore fails when 2D label id changed to be a submodel of a ...) closed by
- fixed: Fixed. Made the rename command give an error when attempting to …
- 12:09 PM Ticket #8859 (View transition can be slow) closed by
- can't reproduce: I don't have an idea what is going on here. You would have to make a …
- 11:41 AM Ticket #8894 (Second "camera stereo": buffer is None) closed by
- duplicate: This was fixed 15 months ago when you reported it, bug #6171. You …
- 11:33 AM Ticket #8940 (System information API) closed by
- fixed: Fixed. Access the public methods with […]
- 11:21 AM Dev2022-5-22 created by
- 11:20 AM 2023-5-18 created by
- 11:19 AM DeveloperMeetings edited by
- (diff)
- 11:17 AM Ticket #8837 (Scalebar causes continuous redraw during movie recording) closed by
- fixed: Fixed. Scalebar was causing continuous redrawing because the draw …
- 11:02 AM Ticket #9003 (Crash in removeRow() when Modeller Comparative tool shown again) closed by
- can't reproduce: Tried various scenarios of adding/deleting alignments while tool not …
- 10:38 AM Ticket #9022 (Graphical interface not working properly) closed by
- nonchimerax: Greg is right. This is certainly a problem with your Windows graphics …
- 9:55 AM Ticket #9021 (Crash in garbage collection during Cython call) closed by
- can't reproduce
- 9:44 AM Ticket #9020 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:43 AM Ticket #9019 (Crash creating QWebEngineProfile at startup) closed by
- can't reproduce
- 9:42 AM Ticket #9018 (qAbort called) closed by
- can't reproduce: I don't see the message that Qt logged, so this must be from before …
- 8:01 AM Ticket #9022 (Graphical interface not working properly) created by
- […] [[Image(...)]]
- 4:38 AM Ticket #9021 (Crash in garbage collection during Cython call) created by
- […]
- 12:51 AM Ticket #9020 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:31 AM Ticket #9019 (Crash creating QWebEngineProfile at startup) created by
- […]
May 15, 2023:
- 6:13 PM Ticket #8975 (Fix AlphaFold energy minimization) closed by
- fixed: Fixed. I put in another hack, this time replacing …
- 5:49 PM Ticket #9002 (Build Structure: wrong residue names for complementary base pairs) closed by
- fixed: Hi Erik, Thanks for reporting this problem. I have fixed it now and …
- 5:38 PM Ticket #9018 (qAbort called) created by
- […]
- 4:24 PM Dev2022-5-15 edited by
- (diff)
- 4:24 PM Dev2022-5-15 edited by
- (diff)
- 12:17 PM Ticket #9017 (Download DICOM: initial sort is reverse alphabetical (Z->A)) created by
- After loading, the VICTRE dataset (last alphabetically) is the top row …
- 12:15 PM Ticket #9016 (Download DICOM: column-width adjustment seems wrong in Collections list) created by
- In the top-level state of the table (listing TCIA Collections), the …
- 12:10 PM Ticket #9015 (Download DICOM: visual indicator in tool that loading is occurring) created by
- Since people may not be looking at the status line and realize why the …
- 11:50 AM ChangeLog edited by
- (diff)
- 11:27 AM Ticket #9013 (QPainter::begin: Paint device returned engine == 0) closed by
- can't reproduce: Dual displays
- 11:24 AM Ticket #9012 (Crash in QDialog::exec()) closed by
- can't reproduce
- 11:22 AM Ticket #9011 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce
- 11:21 AM Ticket #9010 (QPainter::begin: Paint device returned engine == 0) closed by
- can't reproduce: Dual displays
- 11:18 AM Ticket #9009 (Crash running save dialog) closed by
- can't reproduce
- 11:13 AM Ticket #9008 (rendering of bond making/breaking along a trajectory) closed by
- not a bug: Redirected to chimerax-users mailing list
- 11:05 AM Ticket #9007 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:02 AM Ticket #9006 (CHIMERAX TOOLSHED DOWN?) closed by
- fixed
- 11:01 AM Ticket #9005 (Crash in removeDockWidget) closed by
- can't reproduce: Possibly fixed on 4/7/23
- 7:01 AM Ticket #9014 (mmCIF reading causing "not enough memory" error) created by
- […]
- 4:58 AM Ticket #9013 (QPainter::begin: Paint device returned engine == 0) created by
- […]
- 12:32 AM Ticket #9012 (Crash in QDialog::exec()) created by
- […]
May 14, 2023:
- 4:27 PM Ticket #9011 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
May 13, 2023:
- 7:51 PM Ticket #9010 (QPainter::begin: Paint device returned engine == 0) created by
- […]
- 3:00 PM Ticket #9009 (Crash running save dialog) created by
- […]
- 9:24 AM Ticket #9008 (rendering of bond making/breaking along a trajectory) created by
- […]
May 12, 2023:
- 10:25 PM Ticket #9007 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 6:06 PM Ticket #9001 (Add a backface culling option when saving to GLTF format) closed by
- fixed: Done. I added a backfaceCulling option (default true) to the save …
- 4:46 PM Ticket #9006 (CHIMERAX TOOLSHED DOWN?) created by
- […]
- 4:30 PM Ticket #8995 (Remove vertex colors when saving gltf of single color objects) closed by
- fixed
- 4:08 PM Ticket #9005 (Crash in removeDockWidget) created by
- […]
- 12:04 PM Ticket #9004 (LookSee Quest app shows models misaligned) closed by
- fixed: Fixed. Released LookSee version 4. The mesh scaling was fine. The …
- 11:09 AM Ticket #9004 (LookSee Quest app shows models misaligned) created by
- If I open two atomic models and align one to another (open 7rfw, open …
- 10:50 AM 2023-5-11 edited by
- (diff)
- 8:49 AM Ticket #9003 (Crash in removeRow() when Modeller Comparative tool shown again) created by
- […]
- 3:49 AM Ticket #9002 (Build Structure: wrong residue names for complementary base pairs) created by
- […]
May 11, 2023:
- 5:58 PM 2023-5-11 edited by
- (diff)
- 5:11 PM Ticket #9001 (Add a backface culling option when saving to GLTF format) created by
- GLTF materials have a backface culling flag that tells the renderer …
- 4:55 PM Ticket #9000 (Use finer triangulations in NIH3D scripts) created by
- Kristen showed images of molecular surfaces and bonds with flat-shaded …
- 4:51 PM Ticket #8999 (Add option to save GLTF with faceted triangle appearance) created by
- There is a GLTF header value material interpolation with values smooth …
- 4:18 PM Ticket #8994 (Unknown crash) closed by
- can't reproduce: 1.1.1, run directly from DMG
- 4:14 PM Ticket #8991 (QPainter::begin: Paint device returned engine == 0) closed by
- can't reproduce: Seems like a dual display issue again
- 3:39 PM Ticket #8998 (Make Dicom 2x2 view follow map series slider) created by
- In the case of the 4D Lung dataset it would be extremely cool to see 3 …
- 3:37 PM Ticket #8997 (Skewed DICOM planes skew DICOM 2x2 view too) created by
- Currently the experimental DICOM viewer positions the camera exactly …
- 3:34 PM Ticket #8996 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) created by
- […]
- 3:28 PM Ticket #8995 (Remove vertex colors when saving gltf of single color objects) created by
- […]
- 2:27 PM NIAID2023 edited by
- (diff)
- 2:26 PM NIAID2022 edited by
- (diff)
- 2:24 PM NIAID2023 created by
- 2:10 PM NIAID2022 edited by
- (diff)
- 1:20 PM Ticket #8994 (Unknown crash) created by
- […]
- 10:10 AM Ticket #8993 (Multipath multiframe DICOM support needed for some TCIA data) created by
- […]
- 10:05 AM Ticket #8992 (TCIA DICOM has empty axes) created by
- […]
- 12:21 AM 2023-5-11 edited by
- (diff)
- 12:20 AM 2023-5-11 edited by
- (diff)
- 12:20 AM 2023-5-11 edited by
- (diff)
May 10, 2023:
- 11:30 PM Ticket #8991 (QPainter::begin: Paint device returned engine == 0) created by
- […]
- 5:36 PM Ticket #8987 (Command line toolshed install) closed by
- not a bug: Hi Atousa, For "toolshed install" you need to provide the full path …
- 5:20 PM Ticket #8990 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) created by
- […]
- 4:08 PM Ticket #8969 (Download DICOM: Gray out 'Load Webpage' button when nothing selected) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/8e858d94d238156aadd0efb20337a8 …
- 3:22 PM Ticket #8988 (Reading ImageJ TIFF RGB map: ValueError: cannot select an axis to ...) closed by
- fixed: Fixed. TiffFile library was returning a 3D array when reading a list …
- 3:18 PM Ticket #8989 (TCIA 1.3.6.1.4.1.9328.50.17.177679383028944381508162168149189677080 ...) created by
- This series displays like it's a 3D dataset, but all the slices in the …
- 3:09 PM Ticket #8988 (Reading ImageJ TIFF RGB map: ValueError: cannot select an axis to ...) created by
- […]
- 2:27 PM Ticket #7101 (Memory leak opening and closing atomic models) reopened by
- Seems to be 0.3 GB now. I nuked the first leak on the tracemalloc …
- 1:48 PM Ticket #8972 (Download DICOM: Add tooltips to the table) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/8ae1a4322f0344c12a34432d32321f …
- 1:39 PM Ticket #8858 (Saving shift_and_scale uses numpy array as boolean) closed by
- fixed: Fixed. The session saving code for shift and scale positioning of …
- 1:25 PM Ticket #8853 (Impossible model hierarchy in saved session) closed by
- fixed: Fixed. The session restore code did not properly handle the case …
- 11:30 AM Ticket #8987 (Command line toolshed install) created by
- […]
- 10:59 AM Ticket #8984 (CCD template fetch: URL can't contain control characters) closed by
- duplicate: duplicate of #6508
- 10:56 AM Ticket #8981 (Graphics crash, macOS 12.0.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:51 AM Ticket #8978 (Save PNG: invalid file name argument) closed by
- not a bug: You tried to save an image file named J387_500*500.png containing a …
- 10:50 AM Ticket #8982 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:47 AM Ticket #8980 (Crash hiding window) closed by
- can't reproduce: No Python traceback or log contents
- 10:36 AM Ticket #8979 (Crash in event loop) closed by
- can't reproduce
- 10:35 AM Ticket #8986 (Download DICOM: Expanding flag on "Dataset" column breaks intuition ...) created by
- As Elaine and Scooter report it's a UX bug.
- 10:33 AM Ticket #8973 (Crash while using Download DICOM dialog) closed by
- fixed: It could be random error but multithreaded code always deserves …
- 10:21 AM Dev2022-5-15 edited by
- (diff)
- 9:51 AM Ticket #8976 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- fixed: Duplicate of #8941. We've discussed this off-list.
- 9:50 AM Ticket #8974 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- duplicate: Duplicate of #8941. Definitely time for me to get a new release out …
- 9:50 AM Ticket #8985 (Add a command to make a pseudobond) created by
- Apparently there is no command to simply create a pseudobond between …
- 9:49 AM Ticket #8941 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- fixed: Definitely time for me to get a new release out (hopefully …
- 9:47 AM Ticket #8984 (CCD template fetch: URL can't contain control characters) created by
- […]
- 9:43 AM Ticket #8977 (No space left on device saving command history) closed by
- nonchimerax
- 9:29 AM Ticket #8983 (Flickering if Side View and Rapid Access) created by
- If the Side View _and_ Rapid Access are showing, then scrolling any …
- 8:58 AM Ticket #8982 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:31 AM Ticket #8981 (Graphics crash, macOS 12.0.1, Intel Iris Plus Graphics 645) created by
- […]
- 8:31 AM Ticket #8980 (Crash hiding window) created by
- […]
- 8:08 AM Ticket #8979 (Crash in event loop) created by
- […]
- 5:26 AM Ticket #8978 (Save PNG: invalid file name argument) created by
- […]
- 5:14 AM Ticket #8977 (No space left on device saving command history) created by
- […]
- 1:43 AM Ticket #8976 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) created by
- […] Screenshot 2023-05-10 at 09.41.39.png
- 12:49 AM Ticket #8957 (Crash checking available bundles) closed by
- limitation: Running ChimeraX remotely is not supported. There are too many things …
- 12:15 AM Ticket #8837 (Scalebar causes continuous redraw during movie recording) reopened by
- 12:07 AM Ticket #8182 (Update AlphaFold prediction to use version 2.3.0 which handles larger ...) closed by
- fixed: Done. I updated about 3 weeks ago to use the newer ColabFold and no …
- 12:07 AM Ticket #8975 (Fix AlphaFold energy minimization) created by
- Google Colab updated from Python 3.9 to 3.10 on April 28, 2023 …
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