Opened 2 years ago
Closed 2 years ago
#8991 closed defect (can't reproduce)
QPainter::begin: Paint device returned engine == 0
Reported by: | Owned by: | Eric Pettersen | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Web Services | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6rc202305021906 (2023-05-02 19:06:00 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00007ff8480be8c0 (most recent call first): File "/Applications/ChimeraX-1.6-rc2023.05.02.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop File "/Applications/ChimeraX-1.6-rc2023.05.02.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init File "/Applications/ChimeraX-1.6-rc2023.05.02.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in File "/Applications/ChimeraX-1.6-rc2023.05.02.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code File "/Applications/ChimeraX-1.6-rc2023.05.02.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main {"app_name":"ChimeraX","timestamp":"2023-05-11 00:05:53.00 +0200","app_version":"1.6.0","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.1 (22C65)","roots_installed":0,"name":"ChimeraX","incident_id":"96965E27-6F6C-4B9F-88BC-85D558743AD9"} { "uptime" : 17000, "procRole" : "Background", "version" : 2, "userID" : 501, "deployVersion" : 210, "modelCode" : "MacBookPro15,2", "coalitionID" : 1680, "osVersion" : { "train" : "macOS 13.1", "build" : "22C65", "releaseType" : "User" }, "captureTime" : "2023-05-11 00:05:35.6603 +0200", "incident" : "96965E27-6F6C-4B9F-88BC-85D558743AD9", "pid" : 2065, "cpuType" : "X86-64", "roots_installed" : 0, "bug_type" : "309", "procLaunch" : "2023-05-10 23:10:37.5672 +0200", "procStartAbsTime" : 13726645806586, "procExitAbsTime" : 17024640183992, "procName" : "ChimeraX", "procPath" : "\/Applications\/ChimeraX-1.6-rc2023.05.02.app\/Contents\/MacOS\/ChimeraX", "bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"}, "storeInfo" : {"deviceIdentifierForVendor":"C66608AB-8C98-55A9-9978-FA79CB6EEA68","thirdParty":true}, "parentProc" : "launchd", "parentPid" : 1, "coalitionName" : "edu.ucsf.cgl.ChimeraX", "crashReporterKey" : "DFDB124D-9831-A217-C794-D533321642C1", "throttleTimeout" : 2147483647, "wakeTime" : 12551, "bridgeVersion" : {"build":"20P2059","train":"7.1"}, "sleepWakeUUID" : "1D55E846-FAAF-405E-B56D-0AB3130D9EA1", "sip" : "enabled", "vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140737487159272\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffedc000-7fffffedd000 [ 4K] r-x\/r-x SM=SHM ", "exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"}, "vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140737487159272\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffedc000-7fffffedd000 [ 4K] r-x\/r-x SM=SHM ", "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 0, "threads" : 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"legacyInfo" : { "threadTriggered" : { "name" : "CrBrowserMain", "queue" : "com.apple.main-thread" } }, "trialInfo" : { "rollouts" : [ { "rolloutId" : "62b4513af75dc926494899c6", "factorPackIds" : { "COREOS_ICD" : "62fbe3cfa9a700130f60b3ea" }, "deploymentId" : 240000019 }, { "rolloutId" : "60da5e84ab0ca017dace9abf", "factorPackIds" : { }, "deploymentId" : 240000008 } ], "experiments" : [ { "treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3", "experimentId" : "6317d2003d24842ff850182a", "deploymentId" : 400000013 }, { "treatmentId" : "6dd670af-0633-45e4-ae5f-122ae4df02be", "experimentId" : "64406ba83deb637ac8a04419", "deploymentId" : 900000005 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6rc202305021906 (2023-05-02) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "/Users/sommereisenc/Documents/Daten/Alpha Fold/Predictions > CS/230504_UTX_880-1401_KMT2D-Uih_1760-1800/230505_UTX_880-1401_KMT2D-Uih_Lys- > XL.cxs" format session opened ChimeraX session > view v3 > view v2 > view v1 Drag select of 9 residues > select clear Drag select of 7 residues > hide sel cartoons > select /B 4171 atoms, 4284 bonds, 522 residues, 1 model selected > color sel red > color sel cornflower blue > select /A 315 atoms, 322 bonds, 40 residues, 1 model selected > color sel cornflower blue > ui tool show "Color Actions" > color sel royal blue > select clear > distance style /B:87@ca /B:67@ca color black radius 0.3 dashes 1 symbol > false > distance style color black > distance style dashes 1 > distance style radius 0.3 > distance style symbol false > distance style #1 color black radius 0.3 dashes 1 symbol false > hide #2 models > show #2 models > color #2 black models > view v1 > distance style color black radius 0.3 dashes 1 symbol false > distance style /B:87@ca /B:67@ca color black radius 0.4 dashes 6 symbol > false > distance style dashes 6 > distance style radius 0.4 > distance style /A:28@ca /B:155@ca color black radius 0.4 dashes 6 symbol > false > ui tool show Distances > ui tool show "Side View" Drag select of 6 residues > hide sel cartoons > distance style /A:28@ca /B:155@ca color black radius 0.4 dashes 1 symbol > false > distance style dashes 1 > distance /A:28@ca /B:155@ca color black radius 0.4 dashes 1 symbol false Distance between /A LYS 28 CA and /B LYS 155 CA: 15.863 > distance style symbol true > distance style symbol false > distance /A:28@ca /B:155@ca color black radius 0.2 dashes 1 symbol false Distance already exists; modify distance properties with 'distance style' > distance style /A:28@ca /B:155@ca color black radius 0.2 dashes 1 symbol > false > distance style radius 0.2 > distance style /A:28@ca /B:155@ca color black radius 0.3 dashes 1 symbol > false > distance style radius 0.3 > lighting soft > lighting simple > lighting soft > lighting simple > distance style /A:28@ca /B:155@ca color black radius 0.3 dashes 1 > decimalPlaces 1 symbol false > distance style decimalPlaces 1 > distance /A:4@ca /B:174@ca color black radius 0.3 dashes 1 decimalPlaces 1 > symbol false Distance between /A LYS 4 CA and /B LYS 174 CA: 11.6 > distance style /A:4@ca /B:174@ca color black radius 0.3 dashes 1 > decimalPlaces 1 symbol false > save /Users/sommereisenc/Desktop/image3.png supersample 3 > select /B 4171 atoms, 4284 bonds, 522 residues, 1 model selected > show sel cartoons > select clear > view v1 > ui mousemode right zoom > view v1 Drag select of 13 residues > hide sel cartoons Drag select of 4 residues > select clear Drag select of 8 residues > hide sel cartoons > select clear > select /B:513 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:512 7 atoms, 6 bonds, 1 residue, 1 model selected > hide sel cartoons > select /B:513 8 atoms, 7 bonds, 1 residue, 1 model selected > hide sel cartoons > lighting soft > lighting full > lighting simple > lighting soft > lighting full > lighting soft > lighting simple > view name v-all1 > save /Users/sommereisenc/Desktop/image3.png supersample 3 > turn y 45 > turn y -45 > ui mousemode right translate > save /Users/sommereisenc/Desktop/image4.png supersample 3 Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6rc202305021906 (2023-05-02) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-20.2.48 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Quad-Core Intel Core i5 Processor Speed: 2,4 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1916.60.2.0.0 (iBridge: 20.16.2059.0.0,0) OS Loader Version: 564.40.4~55 Software: System Software Overview: System Version: macOS 13.1 (22C65) Kernel Version: Darwin 22.2.0 Time since boot: 15 hours, 32 minutes Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal HP 27xq: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: CNK91418C0 Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Adapter Firmware Version: ff.c1 Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 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ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
Cc: | added |
---|---|
Component: | Unassigned → Web Services |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
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Seems like a dual display issue again