![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9075 closed defect (can't reproduce)
Some kind of crash handling text input
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.14.6-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [9971]
Path: /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.6.1 (1.6.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [9971]
User ID: 501
Date/Time: 2023-05-26 02:31:51.447 +0800
OS Version: Mac OS X 10.14.6 (18G9323)
Report Version: 12
Bridge OS Version: 7.2 (20P3045)
Anonymous UUID: 1EED39EA-46E8-AB35-858E-C887F5ADE842
Sleep/Wake UUID: C922B95A-84DC-4CBD-AA08-85CF7A59A4FC
Time Awake Since Boot: 720000 seconds
Time Since Wake: 25000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x18:
-->
__TEXT 0000000109f4c000-0000000109f4d000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5b0092c2 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5b0c4bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff5af26d8a raise + 26
3 libsystem_platform.dylib 0x00007fff5b0b9b5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libqcocoa.dylib 0x000000012cb6b0c2 0x12cafd000 + 450754
6 com.apple.AppKit 0x00007fff2c76b56a -[NSTextInputContext(NSInputContext_WithCompletion) selectedRangeWithCompletionHandler:] + 95
7 com.apple.AppKit 0x00007fff2c6f188f -[NSTextInputContext handleTSMEvent:completionHandler:] + 1534
8 com.apple.AppKit 0x00007fff2c6f1219 _NSTSMEventHandler + 306
9 com.apple.HIToolbox 0x00007fff2e03722e DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1422
10 com.apple.HIToolbox 0x00007fff2e0365df SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 371
11 com.apple.HIToolbox 0x00007fff2e036465 SendEventToEventTargetWithOptions + 45
12 com.apple.HIToolbox 0x00007fff2e09df8f SendTSMEvent_WithCompletionHandler + 383
13 com.apple.HIToolbox 0x00007fff2e23ef61 __SendTextInputEvent_WithCompletionHandler_block_invoke + 489
14 com.apple.HIToolbox 0x00007fff2e23d749 SendTextInputEvent_WithCompletionHandler + 1126
15 com.apple.HIToolbox 0x00007fff2e2a1264 -[IMKInputSession _postEvent:completionHandler:] + 170
16 com.apple.HIToolbox 0x00007fff2e2b4861 -[IMKInputSession selectedRange_withCompletionHandler:] + 288
17 com.apple.HIToolbox 0x00007fff2e2a1b54 __49-[IMKInputSession imkxpc_selectedRangeWithReply:]_block_invoke + 470
18 com.apple.CoreFoundation 0x00007fff2ee1847c __CFRUNLOOP_IS_CALLING_OUT_TO_A_BLOCK__ + 12
19 com.apple.CoreFoundation 0x00007fff2eddbaa7 __CFRunLoopDoBlocks + 394
20 com.apple.CoreFoundation 0x00007fff2eddb1ea __CFRunLoopRun + 1210
21 com.apple.CoreFoundation 0x00007fff2eddaade CFRunLoopRunSpecific + 455
22 com.apple.HIToolbox 0x00007fff2e0391ab RunCurrentEventLoopInMode + 292
23 com.apple.HIToolbox 0x00007fff2e038ded ReceiveNextEventCommon + 355
24 com.apple.HIToolbox 0x00007fff2e038c76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
25 com.apple.AppKit 0x00007fff2c3d0e89 _DPSNextEvent + 1135
26 com.apple.AppKit 0x00007fff2c3cfb77 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
27 com.apple.AppKit 0x00007fff2c3c9c94 -[NSApplication run] + 699
28 libqcocoa.dylib 0x000000012cb13753 0x12cafd000 + 91987
29 QtCore 0x000000011cacb4b6 QEventLoop::exec(QFlags) + 486
30 QtCore 0x000000011cac2725 QCoreApplication::exec() + 133
31 QtWidgets.abi3.so 0x000000011ecd854a meth_QApplication_exec(_object*, _object*) + 90
32 org.python.python 0x0000000109fd571d cfunction_call + 125
33 org.python.python 0x0000000109f965b7 _PyObject_MakeTpCall + 359
34 org.python.python 0x000000010a06ee9c call_function + 876
35 org.python.python 0x000000010a06c2a2 _PyEval_EvalFrameDefault + 25554
36 org.python.python 0x0000000109f96d28 function_code_fastcall + 104
37 org.python.python 0x0000000109f98d6a method_vectorcall + 202
38 org.python.python 0x000000010a06ee0c call_function + 732
39 org.python.python 0x000000010a06c2a2 _PyEval_EvalFrameDefault + 25554
40 org.python.python 0x000000010a06fb03 _PyEval_EvalCode + 2611
41 org.python.python 0x0000000109f96cb1 _PyFunction_Vectorcall + 289
42 org.python.python 0x000000010a06ee0c call_function + 732
43 org.python.python 0x000000010a06c34b _PyEval_EvalFrameDefault + 25723
44 org.python.python 0x000000010a06fb03 _PyEval_EvalCode + 2611
45 org.python.python 0x000000010a065dab PyEval_EvalCode + 139
46 org.python.python 0x000000010a062c12 builtin_exec + 626
47 org.python.python 0x0000000109fd5023 cfunction_vectorcall_FASTCALL + 195
48 org.python.python 0x000000010a06ee0c call_function + 732
49 org.python.python 0x000000010a06c34b _PyEval_EvalFrameDefault + 25723
50 org.python.python 0x000000010a06fb03 _PyEval_EvalCode + 2611
51 org.python.python 0x0000000109f96cb1 _PyFunction_Vectorcall + 289
52 org.python.python 0x000000010a06ee0c call_function + 732
53 org.python.python 0x000000010a06c34b _PyEval_EvalFrameDefault + 25723
54 org.python.python 0x000000010a06fb03 _PyEval_EvalCode + 2611
55 org.python.python 0x0000000109f96cb1 _PyFunction_Vectorcall + 289
56 org.python.python 0x000000010a0d5870 pymain_run_module + 208
57 org.python.python 0x000000010a0d4f87 Py_RunMain + 1431
58 org.python.python 0x000000010a0d558f pymain_main + 223
59 org.python.python 0x000000010a0d549b Py_Main + 43
60 edu.ucsf.cgl.ChimeraX 0x0000000109f4cdc8 main + 120
61 libdyld.dylib 0x00007fff5aece3d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5b006866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5b0c556e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010ba1923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff5b006866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5b0c556e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010ba1923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff5b006866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5b0c556e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010ba1923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 4:
0 libsystem_kernel.dylib 0x00007fff5b006866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5b0c556e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010ba1923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 5:
0 libsystem_kernel.dylib 0x00007fff5b006866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5b0c556e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010ba1923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 6:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff5b00b0a2 kevent64 + 10
1 QtWebEngineCore 0x0000000124bc53ca 0x1206f0000 + 72176586
2 QtWebEngineCore 0x0000000124bc526f 0x1206f0000 + 72176239
3 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
4 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
5 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
6 QtWebEngineCore 0x0000000124b72aad 0x1206f0000 + 71838381
7 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
8 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
9 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 7:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b80057 0x1206f0000 + 71893079
5 QtWebEngineCore 0x0000000124b7fb8d 0x1206f0000 + 71891853
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 8:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b80057 0x1206f0000 + 71893079
5 QtWebEngineCore 0x0000000124b7fafd 0x1206f0000 + 71891709
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5b00b0a2 kevent64 + 10
1 QtWebEngineCore 0x0000000124bc53ca 0x1206f0000 + 72176586
2 QtWebEngineCore 0x0000000124bc526f 0x1206f0000 + 72176239
3 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
4 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
5 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
6 QtWebEngineCore 0x00000001223a9572 0x1206f0000 + 30119282
7 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
8 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
9 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 11:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b80057 0x1206f0000 + 71893079
5 QtWebEngineCore 0x0000000124b7fb8d 0x1206f0000 + 71891853
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5b00b0a2 kevent64 + 10
1 QtWebEngineCore 0x0000000124bc53ca 0x1206f0000 + 72176586
2 QtWebEngineCore 0x0000000124bc526f 0x1206f0000 + 72176239
3 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
4 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
5 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
6 QtWebEngineCore 0x00000001277eb882 0x1206f0000 + 118470786
7 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
8 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
9 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 14:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff5b006866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5b0c556e _pthread_cond_wait + 722
2 QtWebEngineCore 0x0000000124bb6e22 0x1206f0000 + 72117794
3 QtWebEngineCore 0x0000000126df9505 0x1206f0000 + 108041477
4 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
5 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
6 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
7 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 15:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b80057 0x1206f0000 + 71893079
5 QtWebEngineCore 0x0000000124b7fbbd 0x1206f0000 + 71891901
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 16:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 18:: NetworkService
0 libsystem_kernel.dylib 0x00007fff5b00b0a2 kevent64 + 10
1 QtWebEngineCore 0x0000000124bc53ca 0x1206f0000 + 72176586
2 QtWebEngineCore 0x0000000124bc526f 0x1206f0000 + 72176239
3 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
4 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
5 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
6 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
7 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
8 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 20:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b80057 0x1206f0000 + 71893079
5 QtWebEngineCore 0x0000000124b7fbed 0x1206f0000 + 71891949
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 22:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2eddbe0e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff2eddb37c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff2eddaade CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff2c3d8bae _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 23:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b80057 0x1206f0000 + 71893079
5 QtWebEngineCore 0x0000000124b7fafd 0x1206f0000 + 71891709
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 24:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124bbe71f 0x1206f0000 + 72148767
4 QtWebEngineCore 0x0000000124ae9e69 0x1206f0000 + 71278185
5 QtWebEngineCore 0x0000000124b65ff3 0x1206f0000 + 71786483
6 QtWebEngineCore 0x0000000124b1da32 0x1206f0000 + 71490098
7 QtWebEngineCore 0x0000000124b8ca58 0x1206f0000 + 71944792
8 QtWebEngineCore 0x0000000124b8cbea 0x1206f0000 + 71945194
9 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
10 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 25:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 QtWebEngineCore 0x0000000124bbe933 0x1206f0000 + 72149299
3 QtWebEngineCore 0x0000000124b7f4af 0x1206f0000 + 71890095
4 QtWebEngineCore 0x0000000124b7fd0c 0x1206f0000 + 71892236
5 QtWebEngineCore 0x0000000124b7fb2d 0x1206f0000 + 71891757
6 QtWebEngineCore 0x0000000124bb8458 0x1206f0000 + 72123480
7 libsystem_pthread.dylib 0x00007fff5b0c22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5b0c5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5b0c140d thread_start + 13
Thread 26:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 29:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 30:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 34:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 35:: Dispatch queue: NSCGSDisableUpdates
0 libsystem_kernel.dylib 0x00007fff5b00321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5b003768 mach_msg + 60
2 com.apple.SkyLight 0x00007fff5414be81 CGSUpdateManager::enable_updates_common() + 577
3 com.apple.SkyLight 0x00007fff5414c21e SLSReenableUpdateToken + 104
4 libdispatch.dylib 0x00007fff5ae805f8 _dispatch_call_block_and_release + 12
5 libdispatch.dylib 0x00007fff5ae8163d _dispatch_client_callout + 8
6 libdispatch.dylib 0x00007fff5ae878e0 _dispatch_lane_serial_drain + 602
7 libdispatch.dylib 0x00007fff5ae88396 _dispatch_lane_invoke + 385
8 libdispatch.dylib 0x00007fff5ae906ed _dispatch_workloop_worker_thread + 598
9 libsystem_pthread.dylib 0x00007fff5b0c1611 _pthread_wqthread + 421
10 libsystem_pthread.dylib 0x00007fff5b0c13fd start_wqthread + 13
Thread 36:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 37:
0 libsystem_pthread.dylib 0x00007fff5b0c13f0 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010b6a75c0 rcx: 0x000000010a476a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010a476a80 rsp: 0x000000010a476a48
r8: 0x000000010a476f48 r9: 0xfa59013026ce9b8e r10: 0x000000010b6a766c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5b0092c2 rfl: 0x0000000000000286 cr2: 0x000000010a476f48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10b1a2000 - 0x10b2b9ff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
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0x10b5f4000 - 0x10b5f6fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
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0x1197f3000 - 0x11980efff +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
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0x7fff58a4e000 - 0x7fff58a67ffb libexpat.1.dylib (16.1.2) /usr/lib/libexpat.1.dylib
0x7fff58a75000 - 0x7fff58a76fff libffi.dylib (18.1) /usr/lib/libffi.dylib
0x7fff58a7f000 - 0x7fff58a84ff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff58a85000 - 0x7fff58a8aff7 libheimdal-asn1.dylib (520.270.8) /usr/lib/libheimdal-asn1.dylib
0x7fff58ab5000 - 0x7fff58ba5fff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff58ba6000 - 0x7fff58e07ffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib
0x7fff58e54000 - 0x7fff58e55fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff58e56000 - 0x7fff58e6eff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff58e86000 - 0x7fff58f2aff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff58f2b000 - 0x7fff5912ffff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff59307000 - 0x7fff59658ff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib
0x7fff596ea000 - 0x7fff59e6ffdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib
0x7fff59e81000 - 0x7fff59e85ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff59e88000 - 0x7fff59ebdfff libpcap.A.dylib (79.250.4) /usr/lib/libpcap.A.dylib
0x7fff59f13000 - 0x7fff59f16fff libpmenergy.dylib (194.267.1) /usr/lib/libpmenergy.dylib
0x7fff59f17000 - 0x7fff59f19fff libpmsample.dylib (194.267.1) /usr/lib/libpmsample.dylib
0x7fff59fd6000 - 0x7fff59feeffb libresolv.9.dylib (65.200.3) /usr/lib/libresolv.9.dylib
0x7fff59ff0000 - 0x7fff5a02bff3 libsandbox.1.dylib (851.270.6) /usr/lib/libsandbox.1.dylib
0x7fff5a03f000 - 0x7fff5a040ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib
0x7fff5a041000 - 0x7fff5a21efff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib
0x7fff5a437000 - 0x7fff5a43aff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff5a43b000 - 0x7fff5a448fff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff5a44d000 - 0x7fff5a530fff libxml2.2.dylib (32.20) /usr/lib/libxml2.2.dylib
0x7fff5a531000 - 0x7fff5a559ff3 libxslt.1.dylib (16.7.3) /usr/lib/libxslt.1.dylib
0x7fff5a55a000 - 0x7fff5a56cff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff5ad50000 - 0x7fff5ad54ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff5ad55000 - 0x7fff5ad5fff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib
0x7fff5ad60000 - 0x7fff5ad67ff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff5ad68000 - 0x7fff5ad71ff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib
0x7fff5ad72000 - 0x7fff5adf7fff libcorecrypto.dylib (602.260.3) /usr/lib/system/libcorecrypto.dylib
0x7fff5ae7e000 - 0x7fff5aeb7ff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib
0x7fff5aeb8000 - 0x7fff5aee4ff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff5aee5000 - 0x7fff5aee5ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff5aee6000 - 0x7fff5aef2ff3 libkxld.dylib (4903.278.70) /usr/lib/system/libkxld.dylib
0x7fff5aef3000 - 0x7fff5aef3ff7 liblaunch.dylib (1336.261.7) /usr/lib/system/liblaunch.dylib
0x7fff5aef4000 - 0x7fff5aef9fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff5aefa000 - 0x7fff5aefcff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib
0x7fff5aefd000 - 0x7fff5aefeff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff5aeff000 - 0x7fff5af16ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff5af17000 - 0x7fff5af17ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff5af18000 - 0x7fff5af9ffff libsystem_c.dylib (1272.250.3) /usr/lib/system/libsystem_c.dylib
0x7fff5afa0000 - 0x7fff5afa3ffb libsystem_configuration.dylib (963.270.4) /usr/lib/system/libsystem_configuration.dylib
0x7fff5afa4000 - 0x7fff5afa7ff7 libsystem_coreservices.dylib (66.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5afa8000 - 0x7fff5afaefff libsystem_darwin.dylib (1272.250.3) /usr/lib/system/libsystem_darwin.dylib
0x7fff5afaf000 - 0x7fff5afb5ffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5afb6000 - 0x7fff5b001ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5b002000 - 0x7fff5b02aff7 libsystem_kernel.dylib (4903.278.70) /usr/lib/system/libsystem_kernel.dylib
0x7fff5b02b000 - 0x7fff5b076ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5b077000 - 0x7fff5b0a1fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff5b0a2000 - 0x7fff5b0acff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5b0ad000 - 0x7fff5b0b4fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5b0b5000 - 0x7fff5b0befef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5b0bf000 - 0x7fff5b0c9ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5b0ca000 - 0x7fff5b0cdff7 libsystem_sandbox.dylib (851.270.6) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5b0ce000 - 0x7fff5b0d0ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff5b0d1000 - 0x7fff5b0d8ff3 libsystem_symptoms.dylib (820.267.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5b0d9000 - 0x7fff5b0eeff7 libsystem_trace.dylib (906.260.3) /usr/lib/system/libsystem_trace.dylib
0x7fff5b0f0000 - 0x7fff5b0f5ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5b0f6000 - 0x7fff5b125fff libxpc.dylib (1336.261.7) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 73
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 134578477
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=837.1M resident=0K(0%) swapped_out_or_unallocated=837.1M(100%)
Writable regions: Total=1.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 1160K 2
CG image 164K 15
CoreAnimation 160K 8
CoreGraphics 8K 1
CoreImage 28K 3
CoreUI image data 1940K 23
CoreUI image file 336K 6
Foundation 4K 1
IOKit 23.3M 1
Kernel Alloc Once 8K 1
MALLOC 788.7M 226
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 16K 3
Memory Tag 242 12K 1
OpenGL GLSL 384K 4
STACK GUARD 148K 37
Stack 169.3M 38
Stack Guard 56.0M 1
VM_ALLOCATE 116.4M 85
VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)
__DATA 90.8M 496
__DATA_CONST 16K 1
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 253.5M 184
__TEXT 583.9M 476
__UNICODE 564K 1
mapped file 82.9M 103
shared memory 2844K 19
=========== ======= =======
TOTAL 2.3G 1750
TOTAL, minus reserved VM space 2.1G 1750
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/ChannelA-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1
Memory Module: BANK 2/ChannelB-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1
USB Device: USB 3.1 Bus
USB Device: SteelSeries Sensei Raw Optical RGB
USB Device: USB 2.0 BILLBOARD
USB Device: iBridge Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 42.1
Thunderbolt Bus: MacBook Pro, Apple Inc., 42.1
Model: MacBookPro15,1, BootROM 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0), 6 processors, Intel Core i7, 2.6 GHz, 16 GB, SMC
Graphics: kHW_IntelUHDGraphics630Item, Intel UHD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555XItem, Radeon Pro 555X, spdisplays_pcie_device, 4 GB
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Oct 23 2019 08:32:36 version 9.137.11.0.32.6.36 FWID 01-671ec60c
Bluetooth: Version 6.0.14d13, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/liguanlve/Documents/Mycode/DVAE/1Data/v2020-other-
> PL/1a0q/1a0q_ligand.sdf
> open /Users/liguanlve/Documents/Mycode/DVAE/1Data/v2020-other-
> PL/1a0q/1a0q_pocket.pdb
Summary of feedback from opening
/Users/liguanlve/Documents/Mycode/DVAE/1Data/v2020-other-
PL/1a0q/1a0q_pocket.pdb
---
warning | Ignored bad PDB record found on line 3
REMARK GENERATED BY X-TOOL on Fri Nov 18 12:29:37 2016
Chain information for 1a0q_pocket.pdb #2
---
Chain | Description
H | No description available
L | No description available
> open /Users/liguanlve/Documents/Mycode/DVAE/1Data/v2020-other-
> PL/1a0q/1a0q_protein.pdb
Summary of feedback from opening
/Users/liguanlve/Documents/Mycode/DVAE/1Data/v2020-other-
PL/1a0q/1a0q_protein.pdb
---
warning | Ignored bad PDB record found on line 3
REMARK GENERATED BY X-TOOL on Tue Nov 20 18:28:48 2012
Chain information for 1a0q_protein.pdb #3
---
Chain | Description
H | No description available
L | No description available
OpenGL version: 4.1 ATI-2.11.26
OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,1
Processor Name: Intel Core i7
Processor Speed: 2.6 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 12 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G9323)
Kernel Version: Darwin 18.7.0
Time since boot: 16 days 16:15
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Radeon Pro 555X:
Chipset Model: Radeon Pro 555X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00e3
ROM Revision: 113-C980AL-075
VBIOS Version: 113-C97501P-005
EFI Driver Version: 01.A1.075
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
LG HDR 4K:
Resolution: 3840 x 2160 (2160p 4K UHD - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DisplayPort
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Some kind of crash handling text input |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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