Opened 2 years ago
Closed 2 years ago
#9038 closed defect (fixed)
back/forward arrow selection keys
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.3.1-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Can back arrow key invert selection like it did in Chimera?
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/goddard/ucsf/presentations/paxlovid-vr-mar2023/nirmatrelvir.cxs
> format session
Log from Mon Mar 20 10:43:54 2023UCSF ChimeraX version: 1.6.dev202302100235
(2023-02-10)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/goddard/Desktop/nirmatrelvir.cxs format session
Log from Mon Mar 20 10:38:20 2023UCSF ChimeraX version: 1.6.dev202302100235
(2023-02-10)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 7tgr format mmcif fromDatabase pdb
7tgr title:
Structure of SARS-CoV-2 main protease in complex with GC376 [more info...]
Chain information for 7tgr #1
---
Chain | Description | UniProt
A | 3C-like proteinase | R1AB_SARS2 1-304
Non-standard residues in 7tgr #1
---
B1S —
(1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic
acid
CL — chloride ion
EDO — 1,2-ethanediol (ethylene glycol)
K — potassium ion
K36 —
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic
acid (GC376)
NA — sodium ion
7tgr mmCIF Assemblies
---
1| author_and_software_defined_assembly
> ui tool show "Send to Quest"
> graphics quality atomTriangles 100
> graphics quality bondTriangles 20
> graphics quality ribbonDivisions 10
> open 7tgr fromDatabase eds
Summary of feedback from opening 7tgr fetched from eds
---
note | Fetching map 7tgr from
http://www.ebi.ac.uk/pdbe/coordinates/files/7tgr.ccp4
Opened eds 7tgr as #2, grid size 204,96,80, pixel 0.562,0.551,0.574, shown at
level 0.818, step 1, values float32
> volume #2 level 0.7671
> select :166
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
> select ligand
62 atoms, 63 bonds, 3 residues, 1 model selected
> select sel :< 5
263 atoms, 248 bonds, 39 residues, 1 model selected
> usage volume cover
volume cover volumes [atomBox an atoms specifier] [pad a number] [box box
bounds] [x 2 floats] [y 2 floats] [z 2 floats] [fBox box bounds] [fx 2 floats]
[fy 2 floats] [fz 2 floats] [iBox box bounds] [ix 2 floats] [iy 2 floats] [iz
2 floats] [useSymmetry true or false] [cellSize cellSize] [step map step]
[modelId modelId]
— Use symmetry to extend a map to cover a region
cellSize: some integers
modelId: a model id
> volume cover #2 atomBox sel
Extended map eds 7tgr to box of size (60, 77, 95),
cell size (204, 96, 80) grid points, 4 symmetry operations,
0 points not covered by any symmetry,
maximum value difference where symmetric map copies overlap = 1.308e-06
Opened eds 7tgr extended as #3, grid size 60,77,95, pixel 0.562,0.551,0.574,
shown at step 1, values float32
> close #3
Drag select of 14 atoms, 32 residues, 9 bonds
> select clear
> select :B1S
29 atoms, 30 bonds, 1 residue, 1 model selected
> select sel :< 4
182 atoms, 179 bonds, 20 residues, 1 model selected
> select :B1S :< 3
97 atoms, 98 bonds, 9 residues, 1 model selected
> select :B1S :< 5
229 atoms, 223 bonds, 29 residues, 1 model selected
> volume cover #2 atomBox sel
Extended map eds 7tgr to box of size (58, 50, 47),
cell size (204, 96, 80) grid points, 4 symmetry operations,
0 points not covered by any symmetry,
maximum value difference where symmetric map copies overlap = 1.308e-06
Opened eds 7tgr extended as #3, grid size 58,50,47, pixel 0.562,0.551,0.574,
shown at step 1, values float32
> volume #3 level 0.6057
> volume #3 level 0.4812
> volume zone #3 nearAtoms sel & #1 range 3.44
> volume #3 level 0.3982
> volume #3 level 0.472
> select :166
9 atoms, 8 bonds, 1 residue, 1 model selected
> color :166 magenta
> color :166 orange
> color :166 byhetero
> color :B1S pink
> graphics quality bondTriangles 20
[Repeated 2 time(s)]
> save 7tgr.cxs
> close
> open 7rfw
7rfw title:
Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor
[more info...]
Chain information for 7rfw #1
---
Chain | Description | UniProt
A | 3C-like proteinase | R1AB_SARS2 1-306
Non-standard residues in 7rfw #1
---
4WI —
(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide
(PF-07321332, bound form; nirmatrelvir, bound form; Paxlovid, bound form)
7rfw mmCIF Assemblies
---
1| author_and_software_defined_assembly
> graphics quality bondTriangles 20
> graphics quality
Quality 1, atom triangles 100, bond triangles 20, ribbon divisions 10
> color :4WI pink
> color :4WI byhetero
> select ligand
68 atoms, 70 bonds, 1 residue, 1 model selected
> hbonds sel reveal true
7 hydrogen bonds found
> color :166 orange
> color :166 byhetero
> select :21,50
15 atoms, 13 bonds, 2 residues, 1 model selected
> show sel
> color sel cyan
> color sel byhetero
> select clear
> open 7rfw fromDatabase eds
Summary of feedback from opening 7rfw fetched from eds
---
note | Fetching map 7rfw from
http://www.ebi.ac.uk/pdbe/coordinates/files/7rfw.ccp4
Opened eds 7rfw as #2, grid size 200,96,80, pixel 0.573,0.553,0.568, shown at
level 0.885, step 1, values float32
> select :4WI :<5
276 atoms, 276 bonds, 7 pseudobonds, 28 residues, 2 models selected
> volume cover #2 near sel
Expected a keyword
> volume cover #2 atomBox sel
Extended map eds 7rfw to box of size (58, 57, 47),
cell size (200, 96, 80) grid points, 4 symmetry operations,
0 points not covered by any symmetry,
maximum value difference where symmetric map copies overlap = 1.4156e-06
Opened eds 7rfw extended as #3, grid size 58,57,47, pixel 0.573,0.553,0.568,
shown at step 1, values float32
> volume #3 level 0.6537
> volume #3 level 0.5574
> volume zone #3 nearAtoms sel & #1 range 3.44
> volume #3 level 0.4804
> select clear
> volume #3 color #ffffb24e
> volume #3 color #ffffb27f
> save paxlovid.cxs
> sym #1 assembly 1
Made 2 copies for 7rfw assembly 1
> view
> hide #!4.2 models
> show #!4.2 models
> color #4.2 cornflowerblue ribbons
> color #4.2 cornflowerblue
> color #4.2:4WI pink
> color #4.2:21,50 lime
> color #4.2:166 orange lime
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color #4.2:166 orange
> color #4.1:21,50 lime
> color #4 byhetero
> save paxlovid.cxs
> volume #3 color #ffffff7f
> volume #3 color #ffffff80
[Repeated 1 time(s)]
> save paxlovid.cxs
> save paxlovid.glb
> ui tool show "Send to Quest"
> save /Users/goddard/Desktop/paxlovid.glb
Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb /sdcard/Android/data/com.UCSF.Lookie/files
stdout:
adb: error: failed to get feature set: no devices/emulators found
stderr:
> save /Users/goddard/Desktop/paxlovid.glb
Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files
stdout:
adb: error: failed to get feature set: no devices/emulators found
stderr:
> save /Users/goddard/Desktop/paxlovid.glb
Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files
> volume cover #2 atomBox #4.2:4WI :< 5
Extended map eds 7rfw to box of size (58, 57, 47),
cell size (200, 96, 80) grid points, 4 symmetry operations,
0 points not covered by any symmetry,
maximum value difference where symmetric map copies overlap = 1.4156e-06
Opened eds 7rfw extended as #5, grid size 58,57,47, pixel 0.573,0.553,0.568,
shown at step 1, values float32
> select #4.2:4WI :< 5
288 atoms, 286 bonds, 7 pseudobonds, 30 residues, 4 models selected
> volume #5 color #feffff
> volume #5 color #feffff7c
> volume #5 color #feffff7d
Volume zone shortcut requires 1 displayed atomic model and 1 map, got 2 atomic
models, 1 maps.
> hide #!4.1 models
> volume zone #5 nearAtoms sel & #4.2 range 3.44
> volume #2 level 0.4977
> volume #5 level 0.4783
> show #!4.1 models
> select clear
> save paxlovid.cxs
[Repeated 1 time(s)]
> save /Users/goddard/Desktop/paxlovid.glb
Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files
> save paxlovid.cxs
> save paxlovid.glb
> open P0DTD1 fromDatabase uniprot
Summary of feedback from opening P0DTD1 fetched from uniprot
---
notes | Fetching compressed P0DTD1 UniProt info from
https://www.uniprot.org/uniprot/P0DTD1.xml
Alignment identifier is P0DTD1
Associated 7rfw chain A to P0DTD1 with 1 mismatch
Associated 7rfw (4.1) chain A to P0DTD1 with 1 mismatch
Associated 7rfw (4.2) chain A to P0DTD1 with 1 mismatch
Opened UniProt P0DTD1
> select #1/A:41,145 #4.1/A:41,145 #4.2/A:41,145
48 atoms, 45 bonds, 6 residues, 3 models selected
> ~select
Nothing selected
> select #1/A:1-306
2367 atoms, 2420 bonds, 306 residues, 1 model selected
> select clear
> save /Users/goddard/Desktop/paxlovid.glb
Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files
> close
> open 155903259 fromDatabase pubchem
Summary of feedback from opening 155903259 fetched from pubchem
---
note | Fetching compressed PubChem 155903259 from
https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/155903259/SDF?record_type=3d
PubChem entry 155903259
> style ball
Changed 67 atom styles
> graphics quality atomTriangles 100
> graphics quality atomTriangles 300 bondTriangles 20
> graphics quality atomTriangles 300 bondTriangles 60
> save nirmatrelvir.cxs
——— End of log from Mon Mar 20 10:38:20 2023 ———
opened ChimeraX session
> color list
No custom colors.
248 builtin colors: alice blue
, aliceblue
, antique white
, antiquewhite
, aqua
, aquamarine
, azure
, beige
, bisque
, black
, blanched almond
, blanchedalmond
, blue
, blue violet
, blueviolet
, brown
, burly wood
, burlywood
, cadet blue
, cadetblue
, chartreuse
, chocolate
, coral
, cornflower blue
, cornflowerblue
, cornsilk
, crimson
, cyan
, dark blue
, dark cyan
, dark goldenrod
, dark gray
, dark green
, dark grey
, dark khaki
, dark magenta
, dark olive green
, dark orange
, dark orchid
, dark red
, dark salmon
, dark sea green
, dark seagreen
, dark slate blue
, dark slate gray
, dark slate grey
, dark turquoise
, dark violet
, darkblue
, darkcyan
, darkgoldenrod
, darkgray
, darkgreen
, darkgrey
, darkkhaki
, darkmagenta
, darkolivegreen
, darkorange
, darkorchid
, darkred
, darksalmon
, darkseagreen
, darkslateblue
, darkslategray
, darkslategrey
, darkturquoise
, darkviolet
, deep pink
, deep sky blue
, deep skyblue
, deeppink
, deepskyblue
, dim gray
, dim grey
, dimgray
, dimgrey
, dodger blue
, dodgerblue
, fire brick
, firebrick
, floral white
, floralwhite
, forest green
, forestgreen
, fuchsia
, gainsboro
, ghost white
, ghostwhite
, gold
, goldenrod
, gray
, green
, green yellow
, greenyellow
, grey
, honeydew
, hot pink
, hotpink
, indian red
, indianred
, indigo
, ivory
, khaki
, lavender
, lavender blush
, lavenderblush
, lawn green
, lawngreen
, lemon chiffon
, lemonchiffon
, light blue
, light coral
, light cyan
, light goldenrod yellow
, light gray
, light green
, light grey
, light pink
, light salmon
, light sea green
, light seagreen
, light sky blue
, light skyblue
, light slate gray
, light slate grey
, light steel blue
, light yellow
, lightblue
, lightcoral
, lightcyan
, lightgoldenrodyellow
, lightgray
, lightgreen
, lightgrey
, lightpink
, lightsalmon
, lightseagreen
, lightskyblue
, lightslategray
, lightslategrey
, lightsteelblue
, lightyellow
, lime
, lime green
, limegreen
, linen
, magenta
, maroon
, medium aquamarine
, medium blue
, medium orchid
, medium purple
, medium sea green
, medium seagreen
, medium slate blue
, medium spring green
, medium turquoise
, medium violet red
, mediumaquamarine
, mediumblue
, mediumorchid
, mediumpurple
, mediumseagreen
, mediumslateblue
, mediumspringgreen
, mediumturquoise
, mediumvioletred
, midnight blue
, midnightblue
, mint cream
, mintcream
, misty rose
, mistyrose
, moccasin
, navajo white
, navajowhite
, navy
, old lace
, oldlace
, olive
, olive drab
, olivedrab
, orange
, orange red
, orangered
, orchid
, pale goldenrod
, pale green
, pale turquoise
, pale violet red
, palegoldenrod
, palegreen
, paleturquoise
, palevioletred
, papaya whip
, papayawhip
, peach puff
, peachpuff
, peru
, pink
, plum
, powder blue
, powderblue
, purple
, rebecca purple
, rebeccapurple
, red
, rosy brown
, rosybrown
, royal blue
, royalblue
, saddle brown
, saddlebrown
, salmon
, sandy brown
, sandybrown
, sea green
, seagreen
, seashell
, sienna
, silver
, sky blue
, skyblue
, slate blue
, slate gray
, slate grey
, slateblue
, slategray
, slategrey
, snow
, spring green
, springgreen
, steel blue
, steelblue
, tan
, teal
, thistle
, tomato
, transparent
, turquoise
, violet
, wheat
, white
, white smoke
, whitesmoke
, yellow
, yellow green
, and yellowgreen
.
> color orchid
> color byhetero
> color hotpink
> color byhetero
> save nirmatrelvir.cxs
——— End of log from Mon Mar 20 10:43:54 2023 ———
opened ChimeraX session
> select /?:1@N5
1 atom, 1 residue, 1 model selected
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,2
Model Number: MK1H3LL/A
Chip: Apple M1 Max
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 8422.100.650
OS Loader Version: 8422.100.650
Software:
System Software Overview:
System Version: macOS 13.3.1 (22E261)
Kernel Version: Darwin 22.4.0
Time since boot: 10 days, 4 hours, 20 minutes
Graphics/Displays:
Apple M1 Max:
Chipset Model: Apple M1 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 32
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.20.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.dev0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (4)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → UI |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → back/forward arrow selection keys |
comment:2 by , 2 years ago
| Cc: | added; removed |
|---|---|
| Owner: | changed from to |
Eric has developed the selection user interfaces, so reassigning to Eric.
comment:3 by , 2 years ago
| Status: | assigned → accepted |
|---|
comment:4 by , 2 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Left/right arrow keys invert selection in currently selected models. If Shift key is pressed, inverts selection in all models.
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Left was actually undo.
Right was invert within models with selections; shift-right was invert in all models.
ChimeraX only currently directly supports invert in all models (sel ~sel) and we haven't heard any complaints so far, so maybe that's what right arrow in ChimeraX should do.