Opened 2 years ago

Closed 2 years ago

#9038 closed defect (fixed)

back/forward arrow selection keys

Reported by: goddard@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: UI Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-13.3.1-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Can back arrow key invert selection like it did in Chimera?

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open /Users/goddard/ucsf/presentations/paxlovid-vr-mar2023/nirmatrelvir.cxs
> format session

Log from Mon Mar 20 10:43:54 2023UCSF ChimeraX version: 1.6.dev202302100235
(2023-02-10)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open /Users/goddard/Desktop/nirmatrelvir.cxs format session

Log from Mon Mar 20 10:38:20 2023UCSF ChimeraX version: 1.6.dev202302100235
(2023-02-10)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 7tgr format mmcif fromDatabase pdb

7tgr title:  
Structure of SARS-CoV-2 main protease in complex with GC376 [more info...]  
  
Chain information for 7tgr #1  
---  
Chain | Description | UniProt  
A | 3C-like proteinase | R1AB_SARS2 1-304  
  
Non-standard residues in 7tgr #1  
---  
B1S —
(1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic
acid  
CL — chloride ion  
EDO — 1,2-ethanediol (ethylene glycol)  
K — potassium ion  
K36 —
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic
acid (GC376)  
NA — sodium ion  
  
7tgr mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
  

> ui tool show "Send to Quest"

> graphics quality atomTriangles 100

> graphics quality bondTriangles 20

> graphics quality ribbonDivisions 10

> open 7tgr fromDatabase eds

Summary of feedback from opening 7tgr fetched from eds  
---  
note | Fetching map 7tgr from
http://www.ebi.ac.uk/pdbe/coordinates/files/7tgr.ccp4  
  
Opened eds 7tgr as #2, grid size 204,96,80, pixel 0.562,0.551,0.574, shown at
level 0.818, step 1, values float32  

> volume #2 level 0.7671

> select :166

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select clear

> select ligand

62 atoms, 63 bonds, 3 residues, 1 model selected  

> select sel :< 5

263 atoms, 248 bonds, 39 residues, 1 model selected  

> usage volume cover

volume cover volumes [atomBox an atoms specifier] [pad a number] [box box
bounds] [x 2 floats] [y 2 floats] [z 2 floats] [fBox box bounds] [fx 2 floats]
[fy 2 floats] [fz 2 floats] [iBox box bounds] [ix 2 floats] [iy 2 floats] [iz
2 floats] [useSymmetry true or false] [cellSize cellSize] [step map step]
[modelId modelId]  
— Use symmetry to extend a map to cover a region  
cellSize: some integers  
modelId: a model id  

> volume cover #2 atomBox sel

Extended map eds 7tgr to box of size (60, 77, 95),  
cell size (204, 96, 80) grid points, 4 symmetry operations,  
0 points not covered by any symmetry,  
maximum value difference where symmetric map copies overlap = 1.308e-06  
  
Opened eds 7tgr extended as #3, grid size 60,77,95, pixel 0.562,0.551,0.574,
shown at step 1, values float32  

> close #3

Drag select of 14 atoms, 32 residues, 9 bonds  

> select clear

> select :B1S

29 atoms, 30 bonds, 1 residue, 1 model selected  

> select sel :< 4

182 atoms, 179 bonds, 20 residues, 1 model selected  

> select :B1S :< 3

97 atoms, 98 bonds, 9 residues, 1 model selected  

> select :B1S :< 5

229 atoms, 223 bonds, 29 residues, 1 model selected  

> volume cover #2 atomBox sel

Extended map eds 7tgr to box of size (58, 50, 47),  
cell size (204, 96, 80) grid points, 4 symmetry operations,  
0 points not covered by any symmetry,  
maximum value difference where symmetric map copies overlap = 1.308e-06  
  
Opened eds 7tgr extended as #3, grid size 58,50,47, pixel 0.562,0.551,0.574,
shown at step 1, values float32  

> volume #3 level 0.6057

> volume #3 level 0.4812

> volume zone #3 nearAtoms sel & #1 range 3.44

> volume #3 level 0.3982

> volume #3 level 0.472

> select :166

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color :166 magenta

> color :166 orange

> color :166 byhetero

> color :B1S pink

> graphics quality bondTriangles 20

[Repeated 2 time(s)]

> save 7tgr.cxs

> close

> open 7rfw

7rfw title:  
Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor
[more info...]  
  
Chain information for 7rfw #1  
---  
Chain | Description | UniProt  
A | 3C-like proteinase | R1AB_SARS2 1-306  
  
Non-standard residues in 7rfw #1  
---  
4WI —
(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide
(PF-07321332, bound form; nirmatrelvir, bound form; Paxlovid, bound form)  
  
7rfw mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
  

> graphics quality bondTriangles 20

> graphics quality

Quality 1, atom triangles 100, bond triangles 20, ribbon divisions 10  

> color :4WI pink

> color :4WI byhetero

> select ligand

68 atoms, 70 bonds, 1 residue, 1 model selected  

> hbonds sel reveal true

7 hydrogen bonds found  

> color :166 orange

> color :166 byhetero

> select :21,50

15 atoms, 13 bonds, 2 residues, 1 model selected  

> show sel

> color sel cyan

> color sel byhetero

> select clear

> open 7rfw fromDatabase eds

Summary of feedback from opening 7rfw fetched from eds  
---  
note | Fetching map 7rfw from
http://www.ebi.ac.uk/pdbe/coordinates/files/7rfw.ccp4  
  
Opened eds 7rfw as #2, grid size 200,96,80, pixel 0.573,0.553,0.568, shown at
level 0.885, step 1, values float32  

> select :4WI :<5

276 atoms, 276 bonds, 7 pseudobonds, 28 residues, 2 models selected  

> volume cover #2 near sel

Expected a keyword  

> volume cover #2 atomBox sel

Extended map eds 7rfw to box of size (58, 57, 47),  
cell size (200, 96, 80) grid points, 4 symmetry operations,  
0 points not covered by any symmetry,  
maximum value difference where symmetric map copies overlap = 1.4156e-06  
  
Opened eds 7rfw extended as #3, grid size 58,57,47, pixel 0.573,0.553,0.568,
shown at step 1, values float32  

> volume #3 level 0.6537

> volume #3 level 0.5574

> volume zone #3 nearAtoms sel & #1 range 3.44

> volume #3 level 0.4804

> select clear

> volume #3 color #ffffb24e

> volume #3 color #ffffb27f

> save paxlovid.cxs

> sym #1 assembly 1

Made 2 copies for 7rfw assembly 1  

> view

> hide #!4.2 models

> show #!4.2 models

> color #4.2 cornflowerblue ribbons

> color #4.2 cornflowerblue

> color #4.2:4WI pink

> color #4.2:21,50 lime

> color #4.2:166 orange lime

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #4.2:166 orange

> color #4.1:21,50 lime

> color #4 byhetero

> save paxlovid.cxs

> volume #3 color #ffffff7f

> volume #3 color #ffffff80

[Repeated 1 time(s)]

> save paxlovid.cxs

> save paxlovid.glb

> ui tool show "Send to Quest"

> save /Users/goddard/Desktop/paxlovid.glb

Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb /sdcard/Android/data/com.UCSF.Lookie/files  
stdout:  
adb: error: failed to get feature set: no devices/emulators found  
  
stderr:  
  

> save /Users/goddard/Desktop/paxlovid.glb

Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files  
stdout:  
adb: error: failed to get feature set: no devices/emulators found  
  
stderr:  
  

> save /Users/goddard/Desktop/paxlovid.glb

Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files  

> volume cover #2 atomBox #4.2:4WI :< 5

Extended map eds 7rfw to box of size (58, 57, 47),  
cell size (200, 96, 80) grid points, 4 symmetry operations,  
0 points not covered by any symmetry,  
maximum value difference where symmetric map copies overlap = 1.4156e-06  
  
Opened eds 7rfw extended as #5, grid size 58,57,47, pixel 0.573,0.553,0.568,
shown at step 1, values float32  

> select #4.2:4WI :< 5

288 atoms, 286 bonds, 7 pseudobonds, 30 residues, 4 models selected  

> volume #5 color #feffff

> volume #5 color #feffff7c

> volume #5 color #feffff7d

Volume zone shortcut requires 1 displayed atomic model and 1 map, got 2 atomic
models, 1 maps.  

> hide #!4.1 models

> volume zone #5 nearAtoms sel & #4.2 range 3.44

> volume #2 level 0.4977

> volume #5 level 0.4783

> show #!4.1 models

> select clear

> save paxlovid.cxs

[Repeated 1 time(s)]

> save /Users/goddard/Desktop/paxlovid.glb

Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files  

> save paxlovid.cxs

> save paxlovid.glb

> open P0DTD1 fromDatabase uniprot

Summary of feedback from opening P0DTD1 fetched from uniprot  
---  
notes | Fetching compressed P0DTD1 UniProt info from
https://www.uniprot.org/uniprot/P0DTD1.xml  
Alignment identifier is P0DTD1  
Associated 7rfw chain A to P0DTD1 with 1 mismatch  
Associated 7rfw (4.1) chain A to P0DTD1 with 1 mismatch  
Associated 7rfw (4.2) chain A to P0DTD1 with 1 mismatch  
  
Opened UniProt P0DTD1  

> select #1/A:41,145 #4.1/A:41,145 #4.2/A:41,145

48 atoms, 45 bonds, 6 residues, 3 models selected  

> ~select

Nothing selected  

> select #1/A:1-306

2367 atoms, 2420 bonds, 306 residues, 1 model selected  

> select clear

> save /Users/goddard/Desktop/paxlovid.glb

Running command: "/opt/homebrew/bin/adb" push
/Users/goddard/Desktop/paxlovid.glb
/sdcard/Android/data/com.UCSF.LookieAR/files  

> close

> open 155903259 fromDatabase pubchem

Summary of feedback from opening 155903259 fetched from pubchem  
---  
note | Fetching compressed PubChem 155903259 from
https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/155903259/SDF?record_type=3d  
  
PubChem entry 155903259  
  

> style ball

Changed 67 atom styles  

> graphics quality atomTriangles 100

> graphics quality atomTriangles 300 bondTriangles 20

> graphics quality atomTriangles 300 bondTriangles 60

> save nirmatrelvir.cxs

——— End of log from Mon Mar 20 10:38:20 2023 ———

opened ChimeraX session  

> color list

No custom colors.  
248 builtin colors: alice blue

, aliceblue

, antique white

, antiquewhite

, aqua

, aquamarine

, azure

, beige

, bisque

, black

, blanched almond

, blanchedalmond

, blue

, blue violet

, blueviolet

, brown

, burly wood

, burlywood

, cadet blue

, cadetblue

, chartreuse

, chocolate

, coral

, cornflower blue

, cornflowerblue

, cornsilk

, crimson

, cyan

, dark blue

, dark cyan

, dark goldenrod

, dark gray

, dark green

, dark grey

, dark khaki

, dark magenta

, dark olive green

, dark orange

, dark orchid

, dark red

, dark salmon

, dark sea green

, dark seagreen

, dark slate blue

, dark slate gray

, dark slate grey

, dark turquoise

, dark violet

, darkblue

, darkcyan

, darkgoldenrod

, darkgray

, darkgreen

, darkgrey

, darkkhaki

, darkmagenta

, darkolivegreen

, darkorange

, darkorchid

, darkred

, darksalmon

, darkseagreen

, darkslateblue

, darkslategray

, darkslategrey

, darkturquoise

, darkviolet

, deep pink

, deep sky blue

, deep skyblue

, deeppink

, deepskyblue

, dim gray

, dim grey

, dimgray

, dimgrey

, dodger blue

, dodgerblue

, fire brick

, firebrick

, floral white

, floralwhite

, forest green

, forestgreen

, fuchsia

, gainsboro

, ghost white

, ghostwhite

, gold

, goldenrod

, gray

, green

, green yellow

, greenyellow

, grey

, honeydew

, hot pink

, hotpink

, indian red

, indianred

, indigo

, ivory

, khaki

, lavender

, lavender blush

, lavenderblush

, lawn green

, lawngreen

, lemon chiffon

, lemonchiffon

, light blue

, light coral

, light cyan

, light goldenrod yellow

, light gray

, light green

, light grey

, light pink

, light salmon

, light sea green

, light seagreen

, light sky blue

, light skyblue

, light slate gray

, light slate grey

, light steel blue

, light yellow

, lightblue

, lightcoral

, lightcyan

, lightgoldenrodyellow

, lightgray

, lightgreen

, lightgrey

, lightpink

, lightsalmon

, lightseagreen

, lightskyblue

, lightslategray

, lightslategrey

, lightsteelblue

, lightyellow

, lime

, lime green

, limegreen

, linen

, magenta

, maroon

, medium aquamarine

, medium blue

, medium orchid

, medium purple

, medium sea green

, medium seagreen

, medium slate blue

, medium spring green

, medium turquoise

, medium violet red

, mediumaquamarine

, mediumblue

, mediumorchid

, mediumpurple

, mediumseagreen

, mediumslateblue

, mediumspringgreen

, mediumturquoise

, mediumvioletred

, midnight blue

, midnightblue

, mint cream

, mintcream

, misty rose

, mistyrose

, moccasin

, navajo white

, navajowhite

, navy

, old lace

, oldlace

, olive

, olive drab

, olivedrab

, orange

, orange red

, orangered

, orchid

, pale goldenrod

, pale green

, pale turquoise

, pale violet red

, palegoldenrod

, palegreen

, paleturquoise

, palevioletred

, papaya whip

, papayawhip

, peach puff

, peachpuff

, peru

, pink

, plum

, powder blue

, powderblue

, purple

, rebecca purple

, rebeccapurple

, red

, rosy brown

, rosybrown

, royal blue

, royalblue

, saddle brown

, saddlebrown

, salmon

, sandy brown

, sandybrown

, sea green

, seagreen

, seashell

, sienna

, silver

, sky blue

, skyblue

, slate blue

, slate gray

, slate grey

, slateblue

, slategray

, slategrey

, snow

, spring green

, springgreen

, steel blue

, steelblue

, tan

, teal

, thistle

, tomato

, transparent

, turquoise

, violet

, wheat

, white

, white smoke

, whitesmoke

, yellow

, yellow green

, and yellowgreen

.  

> color orchid

> color byhetero

> color hotpink

> color byhetero

> save nirmatrelvir.cxs

——— End of log from Mon Mar 20 10:43:54 2023 ———

opened ChimeraX session  

> select /?:1@N5

1 atom, 1 residue, 1 model selected  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,2
      Model Number: MK1H3LL/A
      Chip: Apple M1 Max
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 32 GB
      System Firmware Version: 8422.100.650
      OS Loader Version: 8422.100.650

Software:

    System Software Overview:

      System Version: macOS 13.3.1 (22E261)
      Kernel Version: Darwin 22.4.0
      Time since boot: 10 days, 4 hours, 20 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 32
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.20.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.6.dev0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (4)

comment:1 by Eric Pettersen, 2 years ago

Cc: Eric Pettersen added
Component: UnassignedUI
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionback/forward arrow selection keys

Left was actually undo.
Right was invert within models with selections; shift-right was invert in all models.
ChimeraX only currently directly supports invert in all models (sel ~sel) and we haven't heard any complaints so far, so maybe that's what right arrow in ChimeraX should do.

comment:2 by Tom Goddard, 2 years ago

Cc: Tom Goddard added; Eric Pettersen removed
Owner: changed from Tom Goddard to Eric Pettersen

Eric has developed the selection user interfaces, so reassigning to Eric.

comment:3 by Eric Pettersen, 2 years ago

Status: assignedaccepted

comment:4 by Eric Pettersen, 2 years ago

Resolution: fixed
Status: acceptedclosed

Left/right arrow keys invert selection in currently selected models. If Shift key is pressed, inverts selection in all models.

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