![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9013 closed defect (can't reproduce)
QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-12.5.1-arm64-arm-64bit
ChimeraX Version: 1.6.dev202303080949 (2023-03-08 09:49:10 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000100b44580 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 1300000,
"procLaunch" : "2023-05-15 09:27:47.4924 +0200",
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,1",
"procStartAbsTime" : 31736666511529,
"coalitionID" : 384589,
"osVersion" : {
"train" : "macOS 12.5.1",
"build" : "21G83",
"releaseType" : "User"
},
"captureTime" : "2023-05-15 10:54:39.8553 +0200",
"incident" : "DB6E2E90-D64B-44A2-BB18-8DE29E5B9EFE",
"bug_type" : "309",
"pid" : 88136,
"procExitAbsTime" : 31861755739638,
"translated" : false,
"cpuType" : "ARM-64",
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"9550DBF0-DC1E-5AB0-81FB-E3F4CE21409E","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "14C998C3-1AA5-72F8-4832-A833B8517703",
"wakeTime" : 6688,
"sleepWakeUUID" : "9A41A63A-FA6B-4CFE-8383-BCA51BCF6828",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
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"faultingThread" : 0,
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202303080949 (2023-03-08)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/adaina/Documents/PUBLI/FGFR2-InDels-Dana_Farber/2023-follow-
> up/SESSION_May5/PREDDIMER/FGFR2_short-1_FGFR2_short-2_best.pdb
Chain information for FGFR2_short-1_FGFR2_short-2_best.pdb
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B
1.7/B | No description available
> ui tool show Matchmaker
> matchmaker #1.7#!1.2-6 to #1.1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
> matchmaker #1.7#!1.2-6 to #1.1/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
> matchmaker #1.7#!1.2-6 to #1.1/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
> matchmaker #1.7#!1.2-6 to #1.1/B pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain B (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain B (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain B (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain B (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain B (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain B (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
No reference and/or match structure/chain chosen
> matchmaker #1.2/A to #1.1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
> matchmaker #1.7#!1.2-6 to #1.1/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
> hide #1.7#!1.2-6 target m
> show #1.7#!1.2-6 target m
> select H
3122 atoms, 364 residues, 7 models selected
> hide sel target a
> hide #!1.4 models
> hide #!1.5 models
> hide #!1.6 models
> hide #1.7 models
> hide #!1.3 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.3 models
> show #!1.2 models
> hide #!1.3 models
> open /Users/adaina/Documents/PUBLI/FGFR2-InDels-Dana_Farber/2023-follow-
> up/SESSION_May5/PREDDIMER/F386_A389del_sho-1_F386_A389del_sho-2_best.pdb
Chain information for F386_A389del_sho-1_F386_A389del_sho-2_best.pdb
---
Chain | Description
2.1/A 2.2/A 2.3/A 2.4/A 2.5/A 2.6/A 2.7/A 2.1/B 2.2/B 2.3/B 2.4/B 2.5/B 2.6/B
2.7/B | No description available
> show #!1.3 models
> hide #!1.3 models
> select H
5740 atoms, 672 residues, 14 models selected
> hide (#2.7#!1.1-2#!2.1-6 & sel) target a
> ui tool show Matchmaker
> matchmaker #1.7#2.7#!1.2-6#!2.1-6 to #1.1/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.7), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.112 angstroms; (across all 22 pairs:
4.308)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.1), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.070 angstroms; (across all 22 pairs:
4.303)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.2), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.125 angstroms; (across all 22 pairs:
4.313)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.3), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.172 angstroms; (across all 22 pairs:
4.320)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.4), sequence
alignment score = 90.4
RMSD between 11 pruned atom pairs is 0.204 angstroms; (across all 22 pairs:
4.310)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.5), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.101 angstroms; (across all 22 pairs:
4.316)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.6), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.115 angstroms; (across all 22 pairs:
4.327)
> hide #!2.1 models
> hide #!2.2 models
> hide #!2.3 models
> hide #!2.4 models
> hide #!2.5 models
> hide #!2.6 models
> hide #2.7 models
> show #!2.2 models
> show #!2.1 models
> hide #!2.2 models
> hide #!2.1 models
> show #!2.2 models
> hide #!2.2 models
> show #!2.3 models
> hide #!1.2 models
> show #!2.1 models
> hide #!2.3 models
> show #!2.2 models
> hide #!2.1 models
> hide #!2.2 models
> show #!2.3 models
> show #!2.4 models
> hide #!2.3 models
> show #!2.5 models
> hide #!2.4 models
> hide #!2.5 models
> show #!2.6 models
> hide #!2.6 models
> show #2.7 models
> hide #2.7 models
> show #!2.1 models
> show #!2.2 models
> hide #!2.1 models
> hide #!2.2 models
> ui tool show Matchmaker
> matchmaker #1.7#2.7#!1.2-6#!2.1-6 to #1.1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.137 angstroms; (across all 26 pairs:
0.137)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.7), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.112 angstroms; (across all 22 pairs:
4.308)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.189 angstroms; (across all 26 pairs:
0.189)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.144 angstroms; (across all 26 pairs:
0.144)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.133 angstroms; (across all 26 pairs:
0.133)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.162 angstroms; (across all 26 pairs:
0.162)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.1), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.070 angstroms; (across all 22 pairs:
4.303)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.2), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.125 angstroms; (across all 22 pairs:
4.313)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.3), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.172 angstroms; (across all 22 pairs:
4.320)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.4), sequence
alignment score = 90.4
RMSD between 11 pruned atom pairs is 0.204 angstroms; (across all 22 pairs:
4.310)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.5), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.101 angstroms; (across all 22 pairs:
4.316)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.6), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.115 angstroms; (across all 22 pairs:
4.327)
> show #!2.1 models
> show #!2.2 models
> show #!2.3 models
> hide #!2.1 models
> hide #!2.2 models
> hide #!2.3 models
> show #!2.1 models
> show #!2.2 models
> hide #!2.1 models
> show #!2.3 models
> hide #!2.2 models
> show #!2.4 models
> hide #!2.3 models
> show #!2.5 models
> hide #!2.4 models
> show #!2.6 models
> hide #!2.5 models
> hide #!2.6 models
> show #2.7 models
> hide #2.7 models
> show #2.7 models
> hide #2.7 models
> ui tool show Matchmaker
> matchmaker #1.7#!1.1,3-6#!2.1-6 to #1.2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.7), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.120 angstroms; (across all 26 pairs:
0.120)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.1), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.102 angstroms; (across all 26 pairs:
0.102)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.3), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.178 angstroms; (across all 26 pairs:
0.178)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.4), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.142 angstroms; (across all 26 pairs:
0.142)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.5), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.111 angstroms; (across all 26 pairs:
0.111)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.6), sequence alignment score
= 138.2
RMSD between 26 pruned atom pairs is 0.163 angstroms; (across all 26 pairs:
0.163)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.1), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.157 angstroms; (across all 22 pairs:
4.315)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.2), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.166 angstroms; (across all 22 pairs:
4.321)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.3), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.172 angstroms; (across all 22 pairs:
4.335)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.4), sequence
alignment score = 90.4
RMSD between 11 pruned atom pairs is 0.226 angstroms; (across all 22 pairs:
4.323)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.5), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.130 angstroms; (across all 22 pairs:
4.323)
Matchmaker FGFR2_short-1_FGFR2_short-2_best.pdb, chain A (#1.2) with
F386_A389del_sho-1_F386_A389del_sho-2_best.pdb, chain A (#2.6), sequence
alignment score = 96.4
RMSD between 10 pruned atom pairs is 0.160 angstroms; (across all 22 pairs:
4.335)
> show #!2.1 models
> show #!1.2 models
> hide #!1.1 models
> show #!2.2 models
> hide #!2.1 models
> hide #!2.2 models
> show #!2.3 models
> hide #!2.3 models
> show #!2.4 models
> show #!2.5 models
> hide #!2.4 models
> select #1.2/A:12
20 atoms, 19 bonds, 1 pseudobond, 2 residues, 2 models selected
> select #1.2/A:13
19 atoms, 17 bonds, 1 pseudobond, 2 residues, 2 models selected
> hide #!2.5 models
> select add #1.2/A:12
39 atoms, 36 bonds, 2 pseudobonds, 4 residues, 2 models selected
> select add #1.2/A:14
58 atoms, 53 bonds, 3 pseudobonds, 6 residues, 2 models selected
> select add #1.2/A:15
68 atoms, 61 bonds, 4 pseudobonds, 8 residues, 2 models selected
> select up
201 atoms, 198 bonds, 4 pseudobonds, 26 residues, 2 models selected
> select up
403 atoms, 401 bonds, 4 pseudobonds, 52 residues, 2 models selected
> select up
426 atoms, 401 bonds, 4 pseudobonds, 52 residues, 2 models selected
> select up
852 atoms, 802 bonds, 56 pseudobonds, 104 residues, 2 models selected
> set bgColor white
> ui tool show "Color Actions"
> color sel orange
> color sel salmon
> color sel dark salmon
> color sel salmon
> color sel light salmon
> color sel dark salmon
> select clear
> select #1.2/A:12
20 atoms, 19 bonds, 1 pseudobond, 2 residues, 2 models selected
> select add #1.2/A:13
39 atoms, 36 bonds, 2 pseudobonds, 4 residues, 2 models selected
> select add #1.2/A:14
58 atoms, 53 bonds, 3 pseudobonds, 6 residues, 2 models selected
> select add #1.2/A:15
68 atoms, 61 bonds, 4 pseudobonds, 8 residues, 2 models selected
> select add #1.2/B:38
88 atoms, 80 bonds, 5 pseudobonds, 10 residues, 2 models selected
> select add #1.2/B:39
107 atoms, 97 bonds, 6 pseudobonds, 12 residues, 2 models selected
> select add #1.2/B:40
126 atoms, 114 bonds, 7 pseudobonds, 14 residues, 2 models selected
> select add #1.2/B:41
136 atoms, 122 bonds, 8 pseudobonds, 16 residues, 2 models selected
> color (#!1.2 & sel) orange
> show #!2.6 models
> hide #!2.6 models
> show #!2.5 models
> select clear
> color #1.2#2.5#!1-2 byhetero
> hide #!2.5 models
> show #!2.4 models
> hide #!2.4 models
> show #!2.5 models
> hide #!2.5 models
> show #!2.6 models
> hide #!2.6 models
> show #2.7 models
> hide #2.7 models
> show #!2.5 models
> save /Users/adaina/Desktop/image16.png supersample 3
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.dev202303080949 (2023-03-08)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,1
Chip: Apple M1 Pro
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 7459.141.1
OS Loader Version: 7459.141.1
Software:
System Software Overview:
System Version: macOS 12.5.1 (21G83)
Kernel Version: Darwin 21.6.0
Time since boot: 54 days 4:12
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL S2721DS:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 75.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.9
ChimeraX-AtomicLibrary: 10.0.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202303080949
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.3.3
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.11
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.8
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.2
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.2
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.6
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.0.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.4
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.2.0
jupyterlab-widgets: 3.0.5
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
pandas: 1.5.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.1.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.2
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.2
python-dateutil: 2.8.2
pytz: 2022.7.1
pyzmq: 25.0.0
qtconsole: 5.4.0
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.0.2
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.9.0
typing-extensions: 4.5.0
urllib3: 1.26.14
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.5
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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