Opened 2 years ago

Closed 2 years ago

Last modified 2 years ago

#9146 closed defect (can't reproduce)

Crash at exit

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{"app_name":"ChimeraX","timestamp":"2023-06-08 17:27:49.00 +0200","app_version":"1.6.1","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.6 (21G646)","incident_id":"E4E46274-AEF8-4D55-9BE2-21FE8D5D5A83","name":"ChimeraX"}
{
  "uptime" : 890000,
  "procLaunch" : "2023-06-08 17:23:08.1438 +0200",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacPro3,1",
  "procStartAbsTime" : 891723121411581,
  "coalitionID" : 79047,
  "osVersion" : {
    "train" : "macOS 12.6.6",
    "build" : "21G646",
    "releaseType" : "User"
  },
  "captureTime" : "2023-06-08 17:27:31.4155 +0200",
  "incident" : "E4E46274-AEF8-4D55-9BE2-21FE8D5D5A83",
  "bug_type" : "309",
  "pid" : 77179,
  "procExitAbsTime" : 891986384008346,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"4DBD91C7-EEEE-5B68-8C82-5224BF49A0BA","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "3955C63C-9486-2032-9208-8CC0E8EEF583",
  "sip" : "enabled",
  "vmRegionInfo" : "0x7f7f77cfd2b0 is not in any region.  Bytes after previous region: 25265  Bytes before following region: 48464\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      MALLOC_LARGE             7f7f77ca6000-7f7f77cf7000 [  324K] rw-\/rwx SM=COW  \n--->  GAP OF 0x12000 BYTES\n      MALLOC_LARGE             7f7f77d09000-7f7f77d1b000 [   72K] rw-\/rwx SM=COW  ",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000001, 0x00007f7f77cfd2b0","rawCodes":[1,140185447682736],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00007f7f77cfd2b0"},
  "vmregioninfo" : "0x7f7f77cfd2b0 is not in any region.  Bytes after previous region: 25265  Bytes before following region: 48464\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      MALLOC_LARGE             7f7f77ca6000-7f7f77cf7000 [  324K] rw-\/rwx SM=COW  \n--->  GAP OF 0x12000 BYTES\n      MALLOC_LARGE             7f7f77d09000-7f7f77d1b000 [   72K] rw-\/rwx SM=COW  ",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[4,202,49,192,235,10,232,88,198,0,0,184,255,255,255,255,72,131,196,8,91,65,94,65,95,93,195,15,31,132,0,0,0,0,0,85,72,137,229,65,87,65,86,65,85,65,84,83,80,72,139,5,75,8,1,0,72,133,192,116,81,73,137,246,73,137,255,76,139,37,81,8,1,0,69,49,237,235,17,15,31,64,0,73,131,197,1,73,131,196,16,73,57,197,115,46,73,131,60,36,0,116,236,73,139,92,36,8,72,133,219,116,226,102,144,72,137,223,76,137,246,65,255,215,72,139,91,80,72,133,219,117,238,72,139,5,247,7,1,0,235,197,72,131,196,8,91,65,92,65,93,65,94,65,95,93,195,102,15,31,68,0,0,85,72,137,229,65,87,65,86,65,85,65,84,83,72,131,236,40,72,137,117,208,73,137,253,76,139,183,128,0],"offset":96}},"frames":[{"imageOffset":32766,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":0},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":1},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":2},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":3},{"imageOffset":0,"imageIndex":4},{"imageOffset":1231564,"symbol":"cleanup_on_exit(_object*, _object*)","symbolLocation":12,"imageIndex":5},{"imageOffset":516572,"symbol":"cfunction_vectorcall_NOARGS","symbolLocation":252,"imageIndex":6},{"imageOffset":1803697,"symbol":"atexit_callfuncs","symbolLocation":113,"imageIndex":6},{"imageOffset":1424718,"symbol":"Py_FinalizeEx","symbolLocation":78,"imageIndex":6},{"imageOffset":1565360,"symbol":"Py_RunMain","symbolLocation":2240,"imageIndex":6},{"imageOffset":1566095,"symbol":"pymain_main","symbolLocation":223,"imageIndex":6},{"imageOffset":1565851,"symbol":"Py_Main","symbolLocation":43,"imageIndex":6},{"imageOffset":3528,"symbol":"main","symbolLocation":120,"imageIndex":7},{"imageOffset":21806,"symbol":"start","symbolLocation":462,"imageIndex":8}],"id":5878099,"triggered":true,"threadState":{"r13":{"value":1579},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":11},"rsi":{"value":11},"r8":{"value":140185260351304},"cr2":{"value":140185260351304},"rdx":{"value":0},"r10":{"value":4680095232,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":12071274070057666726},"r15":{"value":22},"rbx":{"value":4680095232,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703529324542,"matchesCrashFrame":1},"rbp":{"value":140185260350400},"rsp":{"value":140185260350360},"r12":{"value":259},"rcx":{"value":140185260350360},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":5879111,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":43194,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":72176586,"imageIndex":9},{"imageOffset":72176239,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71838381,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879113,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71893079,"imageIndex":9},{"imageOffset":71891709,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879114,"name":"Chrome_IOThread","frames":[{"imageOffset":43194,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":72176586,"imageIndex":9},{"imageOffset":72176239,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":30119282,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879115,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":72148767,"imageIndex":9},{"imageOffset":71278185,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879116,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71893079,"imageIndex":9},{"imageOffset":71891853,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879119,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71278088,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879120,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":43194,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":72176586,"imageIndex":9},{"imageOffset":72176239,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":118470786,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879121,"name":"CompositorTileWorker1","frames":[{"imageOffset":17370,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":72117794,"imageIndex":9},{"imageOffset":108041477,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879122,"name":"ThreadPoolSingleThreadSharedForeground0","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71893079,"imageIndex":9},{"imageOffset":71891901,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879126,"name":"VizCompositorThread","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":72148767,"imageIndex":9},{"imageOffset":71278185,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879142,"name":"NetworkService","frames":[{"imageOffset":43194,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":72176586,"imageIndex":9},{"imageOffset":72176239,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879143,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":72148767,"imageIndex":9},{"imageOffset":71278185,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879145,"name":"ThreadPoolSingleThreadForegroundBlocking1","frames":[{"imageOffset":28994,"symbol":"__wait4","symbolLocation":10,"imageIndex":0},{"imageOffset":72133404,"imageIndex":9},{"imageOffset":36659326,"imageIndex":9},{"imageOffset":30438613,"imageIndex":9},{"imageOffset":71673383,"imageIndex":9},{"imageOffset":71857305,"imageIndex":9},{"imageOffset":71858625,"imageIndex":9},{"imageOffset":71856522,"imageIndex":9},{"imageOffset":72119514,"imageIndex":9},{"imageOffset":71855630,"imageIndex":9},{"imageOffset":71892757,"imageIndex":9},{"imageOffset":71891949,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879332,"name":"com.apple.NSEventThread","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":537872,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":319,"imageIndex":10},{"imageOffset":531360,"symbol":"__CFRunLoopRun","symbolLocation":1276,"imageIndex":10},{"imageOffset":528356,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":10},{"imageOffset":1755534,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":11},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879345,"name":"MemoryInfra","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":72148767,"imageIndex":9},{"imageOffset":71278185,"imageIndex":9},{"imageOffset":71786483,"imageIndex":9},{"imageOffset":71490098,"imageIndex":9},{"imageOffset":71944792,"imageIndex":9},{"imageOffset":71945194,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5879346,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71892236,"imageIndex":9},{"imageOffset":71891757,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5880599,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71893079,"imageIndex":9},{"imageOffset":71891853,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5880603,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71893079,"imageIndex":9},{"imageOffset":71891709,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5880880,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":5881901,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":5881942,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":5881947,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71893079,"imageIndex":9},{"imageOffset":71891853,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":5881949,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6506,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7384,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":72149299,"imageIndex":9},{"imageOffset":71890095,"imageIndex":9},{"imageOffset":71892236,"imageIndex":9},{"imageOffset":71891853,"imageIndex":9},{"imageOffset":72123480,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]}],
  "usedImages" : [
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703529291776,
    "size" : 229376,
    "uuid" : "35a199f3-e389-3202-916b-d6662a391f7e",
    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    "name" : "libsystem_kernel.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703529521152,
    "size" : 49152,
    "uuid" : "e5d44afd-2577-3cee-8711-9d8d426229e0",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703528275968,
    "size" : 561152,
    "uuid" : "e42e9d7a-03b4-340b-b61e-dcd45fd4acc0",
    "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    "name" : "libsystem_c.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703529619456,
    "size" : 40960,
    "uuid" : "a8a33774-6d44-35e9-ad2a-bad9e4d5192a",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
  },
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4675895296,
    "size" : 1605632,
    "uuid" : "5590e5eb-1a53-3bf0-9ffc-71d23992c730",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtCore.abi3.so",
    "name" : "QtCore.abi3.so"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4553011200,
    "CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
    "CFBundleIdentifier" : "org.python.python",
    "size" : 2527232,
    "uuid" : "ef9cc1f4-5991-3213-9a9e-e68c578b6c1b",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
    "name" : "Python",
    "CFBundleVersion" : "3.9.11"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4544385024,
    "CFBundleShortVersionString" : "1.6.1",
    "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
    "size" : 4096,
    "uuid" : "5df621ee-554e-36a8-b448-93b2334e5480",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
    "name" : "ChimeraX",
    "CFBundleVersion" : "1.6.1.0"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4679569408,
    "size" : 442368,
    "uuid" : "2517e9fe-884a-3855-8532-92bffba3f81c",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5331632128,
    "size" : 174571520,
    "uuid" : "473ca65c-6149-3bfa-a88b-95ac735bcd3b",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703529836544,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 5263360,
    "uuid" : "5e33664d-9c9a-3ac4-ad94-641d53e06c7b",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "1866"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703573565440,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.AppKit",
    "size" : 15269888,
    "uuid" : "1a1a9da7-da66-31da-92cd-51b9cf968145",
    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
    "CFBundleVersion" : "2113.60.148"
  }
],
  "sharedCache" : {
  "base" : 140703526264832,
  "size" : 19331678208,
  "uuid" : "f1151485-63d5-339e-9a30-e15d7842ae9f"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               640K        5 \nActivity Tracing                   256K        1 \nCG backing stores                 1296K        4 \nCG image                            92K       16 \nColorSync                          228K       27 \nCoreAnimation                      172K       17 \nCoreGraphics                        12K        2 \nCoreUI image data                 1340K       20 \nFoundation                          16K        1 \nIOKit                             7940K        1 \nKernel Alloc Once                  404K        4 \nMALLOC                           385.7M      559 \nMALLOC guard page                   32K        7 \nMALLOC_LARGE (reserved)            256K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nOpenGL GLSL                        384K        4 \nSTACK GUARD                         92K       23 \nStack                            162.2M       24 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                       98.8M       78 \nVM_ALLOCATE (reserved)           160.0M        2         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            58.1M      702 \n__DATA_CONST                      31.1M      344 \n__DATA_DIRTY                      1641K      213 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       682.0M      174 \n__OBJC_RO                         82.8M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                           840.7M      698 \n__UNICODE                          592K        1 \ndyld private memory               1152K        3 \nmapped file                      187.5M       41 \nshared memory                      796K       22 \n===========                     =======  ======= \nTOTAL                              3.1G     3002 \nTOTAL, minus reserved VM space     2.5G     3002 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "6112dda2fc54bc3389840642",
      "factorPackIds" : {
        "SIRI_DICTATION_ASSETS" : "631730a28520965d1cba0681"
      },
      "deploymentId" : 240000145
    },
    {
      "rolloutId" : "6297d96be2c9387df974efa4",
      "factorPackIds" : {

      },
      "deploymentId" : 240000008
    }
  ],
  "experiments" : [
    {
      "treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3",
      "experimentId" : "6317d2003d24842ff850182a",
      "deploymentId" : 400000013
    },
    {
      "treatmentId" : "6dd670af-0633-45e4-ae5f-122ae4df02be",
      "experimentId" : "64406ba83deb637ac8a04419",
      "deploymentId" : 900000005
    }
  ]
}
}


Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.8.101
OpenGL renderer: AMD Radeon RX 570 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac Pro
      Model Identifier: MacPro3,1
      Processor Name: Quad-Core Intel Xeon
      Processor Speed: 2,8 GHz
      Number of Processors: 2
      Total Number of Cores: 8
      L2 Cache (per Processor): 12 MB
      Memory: 22 GB
      System Firmware Version: 9999.999.999.999.999
      OS Loader Version: 540.120.3~22
      SMC Version (system): 9.9999

Software:

    System Software Overview:

      System Version: macOS 12.6.6 (21G646)
      Kernel Version: Darwin 21.6.0
      Time since boot: 10 days 7:47

Graphics/Displays:

    AMD Radeon RX 570:

      Chipset Model: AMD Radeon RX 570
      Type: GPU
      Bus: PCIe
      Slot: Slot-1
      PCIe Lane Width: x16
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67df
      Revision ID: 0x00ef
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        C34J79x:
          Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
          UI Looks like: 3440 x 1440 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: H4ZRA01662  
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.21.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.6.0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (5)

comment:1 by Eric Pettersen, 2 years ago

Cc: Tom Goddard added
Component: Unassigned → Core
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash at exit

comment:2 by Eric Pettersen, 2 years ago

Resolution: → can't reproduce
Status: accepted → closed

comment:3 by Tom Goddard, 2 years ago

What tells you it crashed at exit? I don't see any info about where it crashed.

comment:4 by Eric Pettersen, 2 years ago

"imageOffset":1803697,"symbol":"atexit_callfuncs"

Hard to see unless you look at the "Description" section of the "Modify Ticket" block, which wraps lines.

comment:5 by Tom Goddard, 2 years ago

Aha! I was wondering why the stack trace was always missing on recent Mac bug reports. It is not missing, it is just on a single line in the Trac web page view. Thanks!

Note: See TracTickets for help on using tickets.