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Opened 2 years ago
Closed 2 years ago
#9149 closed defect (duplicate)
Show chain sequence: TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sequence | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.4-arm64-arm-64bit
ChimeraX Version: 1.6.dev202302080100 (2023-02-08 01:00:23 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.dev202302080100 (2023-02-08)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF with IDRs mapping mutations.cxs"
Log from Wed Apr 5 09:45:10 2023UCSF ChimeraX version: 1.6.dev202302080100
(2023-02-08)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF with IDRs.cxs"
restore_snapshot for "Volume" returned None
restore_snapshot for "VolumeSurface" returned None
Log from Sun Feb 26 19:26:14 2023UCSF ChimeraX version: 1.6.dev202302080100
(2023-02-08)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF with IDRs.cxs"
Opened emdb 0974 as #1, grid size 512,512,512, pixel 1.04, shown at level 0.4,
step 2, values float32
Log from Sun Feb 26 15:57:38 2023UCSF ChimeraX version: 1.6.dev202302080100
(2023-02-08)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF complex adding tentacle.cxs"
Opened emdb 0974 as #1, grid size 512,512,512, pixel 1.04, shown at level 0.4,
step 2, values float32
Log from Tue Feb 14 21:20:40 2023UCSF ChimeraX version: 1.6.dev202302080100
(2023-02-08)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF complex adding tentacle.cxs"
Opened emdb 0974 as #1, grid size 512,512,512, pixel 1.04, shown at level 0.4,
step 2, values float32
Log from Mon Feb 13 10:10:42 2023UCSF ChimeraX version: 1.6.dev202302080100
(2023-02-08)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
Opened emdb 0974 as #1, grid size 512,512,512, pixel 1.04, shown at step 2,
values float32
Log from Fri Feb 10 19:56:30 2023 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> open 0974 fromDatabase emdb
Opened emdb 0974 as #1, grid size 512,512,512, pixel 1.04, shown at level
0.252, step 2, values float32
> volume #1 level 0.3
> hide #!1 models
> show #!1 models
> volume #1 level 0.4
> volume #1 level 0.45
> volume #1 level 0.4
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/ARID1A_901_1638.pdb"
Chain information for ARID1A_901_1638.pdb #2
---
Chain | Description
A | No description available
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select subtract #2
Nothing selected
> ui mousemode right "translate selected models"
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> view matrix models #2,1,0,0,187.36,0,1,0,25.791,0,0,1,29.145
> view matrix models #2,1,0,0,200.56,0,1,0,38.842,0,0,1,155.15
> view matrix models #2,1,0,0,157.28,0,1,0,143.92,0,0,1,190.94
> show #2 target m
[Repeated 2 time(s)]
> color sel bypolymer
> style sel ball
Changed 5560 atom styles
> select add #1
5560 atoms, 5727 bonds, 738 residues, 3 models selected
> select subtract #1
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select subtract #2
Nothing selected
> style ball
Changed 5560 atom styles
> style ball
Changed 5560 atom styles
> style ball
Changed 5560 atom styles
> style ball
Changed 5560 atom styles
> hide surfaces
[Repeated 1 time(s)]
> hide cartoons
> show cartoons
> show atoms
[Repeated 1 time(s)]
> hide atoms
> hide surfaces
> show surfaces
> hide surfaces
> show surfaces
> hide surfaces
> show surfaces
> hide #1.1 models
> show #1.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> volume #1 level 0.3
> volume #1 level 0.2
> volume #1 level 0.35
> volume #1 level 0.5
> volume #1 level 0.6
> volume #1 level 0.3
> volume #1 level 0.4
> open 6LTJ fromDatabase pdb
Summary of feedback from opening 6LTJ fetched from pdb
---
notes | Fetching compressed mmCIF 6ltj from
http://files.rcsb.org/download/6ltj.cif
Fetching CCD ZN from http://ligand-expo.rcsb.org/reports/Z/ZN/ZN.cif
6ltj title:
Structure of nucleosome-bound human BAF complex [more info...]
Chain information for 6ltj #3
---
Chain | Description | UniProt
A E | Histone H3.3 | H33_XENLA
B F | Histone H4 | H4_XENLA
C G | Histone H2A type 1 | H2A1_XENLA
D H | Histone H2B | Q92131_XENLA
I | Transcription activator BRG1 | SMCA4_HUMAN
J | Actin-like protein 6A | ACL6A_HUMAN
K | Actin, cytoplasmic 1 | ACTB_HUMAN
L | AT-rich interactive domain-containing protein 1A | ARI1A_HUMAN
M | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin
subfamily B member 1 | SNF5_HUMAN
N O | SWI/SNF complex subunit SMARCC2 | SMRC2_HUMAN
P | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin
subfamily D member 1 | SMRD1_HUMAN
Q | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin
subfamily E member 1 | SMCE1_HUMAN
R | Zinc finger protein ubi-d4 | REQU_HUMAN
X | DNA (119-MER) |
Y | DNA (119-MER) |
Non-standard residues in 6ltj #3
---
ZN — zinc ion
> hide #!1 models
> hide #1.1 models
> hide #3.1 models
> hide #3.3 models
> show #3.3 models
> hide #3.3 models
> show #3.3 models
> hide #3.3 models
> hide #3.2 models
> hide #!3 models
> show #!3 models
> show cartoons
> show surfaces
> hide surfaces
[Repeated 1 time(s)]
> show surfaces
[Repeated 1 time(s)]
> hide surfaces
> hide atoms
> ui mousemode right "translate selected models"
> ui tool show "Selection Inspector"
> ui mousemode right translate
[Repeated 1 time(s)]
> ui mousemode right select
> ui mousemode right "move picked models"
> ui mousemode right select
> ui mousemode right zoom
> ui mousemode right "move planes"
> ui mousemode right "rotate slab"
> ui mousemode right translate
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> ui mousemode right "rotate selected models"
> ui mousemode right select
> select #2/A:407
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:407
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.54774,-0.63698,0.54243,162.56,-0.18031,0.72298,0.66692,146.15,-0.81699,0.2675,-0.51086,188.91
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.54774,-0.63698,0.54243,167.31,-0.18031,0.72298,0.66692,201.25,-0.81699,0.2675,-0.51086,155.08
> view matrix models
> #2,-0.54774,-0.63698,0.54243,169.04,-0.18031,0.72298,0.66692,205.74,-0.81699,0.2675,-0.51086,161.68
> view matrix models
> #2,-0.54774,-0.63698,0.54243,174.37,-0.18031,0.72298,0.66692,207.65,-0.81699,0.2675,-0.51086,163.61
> view matrix models
> #2,-0.54774,-0.63698,0.54243,178.34,-0.18031,0.72298,0.66692,198.62,-0.81699,0.2675,-0.51086,165.52
> view matrix models
> #2,-0.54774,-0.63698,0.54243,179.08,-0.18031,0.72298,0.66692,199.27,-0.81699,0.2675,-0.51086,164.26
> view matrix models
> #2,-0.54774,-0.63698,0.54243,179.36,-0.18031,0.72298,0.66692,198.65,-0.81699,0.2675,-0.51086,164.1
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.4912,-0.65126,0.57844,179.25,-0.18264,0.72631,0.66266,198.66,-0.85169,0.21985,-0.4757,164.19
> view matrix models
> #2,-0.59191,-0.13427,0.79474,182.19,-0.14212,0.98796,0.061071,197.11,-0.79338,-0.076797,-0.60387,162.48
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.59191,-0.13427,0.79474,175.22,-0.14212,0.98796,0.061071,199.41,-0.79338,-0.076797,-0.60387,166.52
> view matrix models
> #2,-0.59191,-0.13427,0.79474,165.91,-0.14212,0.98796,0.061071,202.45,-0.79338,-0.076797,-0.60387,171.9
> view matrix models
> #2,-0.59191,-0.13427,0.79474,158.83,-0.14212,0.98796,0.061071,204.33,-0.79338,-0.076797,-0.60387,176
> view matrix models
> #2,-0.59191,-0.13427,0.79474,157.54,-0.14212,0.98796,0.061071,205.23,-0.79338,-0.076797,-0.60387,176.75
> view matrix models
> #2,-0.59191,-0.13427,0.79474,157.45,-0.14212,0.98796,0.061071,205.56,-0.79338,-0.076797,-0.60387,177.06
> view matrix models
> #2,-0.59191,-0.13427,0.79474,157.49,-0.14212,0.98796,0.061071,205.39,-0.79338,-0.076797,-0.60387,177.06
> view matrix models
> #2,-0.59191,-0.13427,0.79474,157.56,-0.14212,0.98796,0.061071,205.46,-0.79338,-0.076797,-0.60387,177.07
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/ARID1A_1_900.pdb"
Chain information for ARID1A_1_900.pdb #4
---
Chain | Description
A | No description available
> ui mousemode right select
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.59191,-0.13427,0.79474,180.01,-0.14212,0.98796,0.061071,218.61,-0.79338,-0.076797,-0.60387,192.46
> undo
> ui mousemode right select
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.59191,-0.13427,0.79474,159.47,-0.14212,0.98796,0.061071,229.96,-0.79338,-0.076797,-0.60387,210.38
> undo
> ui mousemode right select
> vr
Traceback (most recent call last):
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute
cmd.run(cmd_text)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/vive/vr.py", line 76, in vr
start_vr(session, multishadow_allowed, simplify_graphics)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/vive/vr.py", line 366, in start_vr
c = vr_camera(session)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/vive/vr.py", line 418, in vr_camera
session._steamvr_camera = c = SteamVRCamera(session)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/vive/vr.py", line 483, in __init__
self.user_interface = UserInterface(self, session)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/vive/vr.py", line 1454, in __init__
import openvr
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/__init__.py", line 54, in <module>
_openvr = ctypes.cdll.LoadLibrary(_openvr_lib_path)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 452, in LoadLibrary
return self._dlltype(name)
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 374, in __init__
self._handle = _dlopen(self._name, mode)
OSError: dlopen(/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib, 0x0006): tried:
'/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib' (mach-o file, but is an incompatible
architecture (have 'x86_64', need 'arm64')),
'/System/Volumes/Preboot/Cryptexes/OS/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib' (no such file),
'/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib' (mach-o file, but is an incompatible
architecture (have 'x86_64', need 'arm64'))
OSError: dlopen(/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib, 0x0006): tried:
'/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib' (mach-o file, but is an incompatible
architecture (have 'x86_64', need 'arm64')),
'/System/Volumes/Preboot/Cryptexes/OS/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib' (no such file),
'/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/openvr/libopenvr_api_32.dylib' (mach-o file, but is an incompatible
architecture (have 'x86_64', need 'arm64'))
File "/Volumes/ChimeraXInstaller
1/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 374, in __init__
self._handle = _dlopen(self._name, mode)
See log for complete Python traceback.
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> hide #!2 models
> show #!2 models
> select add #2
5560 atoms, 5727 bonds, 738 residues, 2 models selected
> select subtract #2
1 model selected
> select #4/A:166
5 atoms, 4 bonds, 1 residue, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,139.3,0,1,0,86.366,0,0,1,80.923
> view matrix models #4,1,0,0,387.28,0,1,0,-214.07,0,0,1,236.26
> view matrix models #4,1,0,0,302.98,0,1,0,55.238,0,0,1,264.7
> view matrix models #4,1,0,0,328.34,0,1,0,134.02,0,0,1,185.73
> view matrix models #4,1,0,0,267.99,0,1,0,269.81,0,0,1,46.224
> view matrix models #4,1,0,0,203.42,0,1,0,255.14,0,0,1,18.324
> view matrix models #4,1,0,0,120.03,0,1,0,172.13,0,0,1,76.575
> view matrix models #4,1,0,0,192.96,0,1,0,237.29,0,0,1,73.518
> view matrix models #4,1,0,0,190.95,0,1,0,234.6,0,0,1,69.655
> ui mousemode right "move planes"
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,212.4,0,1,0,297.29,0,0,1,76.95
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.4049,0.89767,-0.17393,229.17,0.10018,0.23262,0.96739,295.57,0.90886,0.37427,-0.18412,66.813
> view matrix models
> #4,-0.86852,0.11861,-0.48126,216.52,0.3135,0.88352,-0.34802,290.83,0.38392,-0.45314,-0.80453,50.523
> view matrix models
> #4,0.3827,0.79798,0.46559,231.15,0.17571,-0.55762,0.81129,282.19,0.90701,-0.22867,-0.35361,56.329
> view matrix models
> #4,0.26476,0.74632,0.61066,232.33,0.24081,-0.66437,0.70755,279.33,0.93376,-0.040277,-0.35562,58.944
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.26476,0.74632,0.61066,195.1,0.24081,-0.66437,0.70755,287.55,0.93376,-0.040277,-0.35562,104.26
> view matrix models
> #4,0.26476,0.74632,0.61066,188.82,0.24081,-0.66437,0.70755,262.88,0.93376,-0.040277,-0.35562,118.52
> view matrix models
> #4,0.26476,0.74632,0.61066,205.48,0.24081,-0.66437,0.70755,262.91,0.93376,-0.040277,-0.35562,112.96
> view matrix models
> #4,0.26476,0.74632,0.61066,205.42,0.24081,-0.66437,0.70755,257.03,0.93376,-0.040277,-0.35562,118.08
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.041484,0.97585,-0.21445,201.24,0.58473,0.15033,0.79718,268.45,0.81016,-0.15847,-0.56438,114.72
> view matrix models
> #4,0.0099666,0.99961,-0.025997,203.63,0.64912,0.013308,0.76057,265.84,0.76062,-0.024456,-0.64874,116
> view matrix models
> #4,-0.095107,0.98846,-0.1179,202.94,0.67616,0.15107,0.7211,267.33,0.73059,-0.011139,-0.68273,115.97
> view matrix models
> #4,-0.41157,0.88376,-0.22265,201.59,0.69889,0.46285,0.54528,269.99,0.58495,0.068811,-0.80815,116.43
> view matrix models
> #4,-0.29199,0.95512,-0.049865,203.91,0.76172,0.26376,0.59178,267.32,0.57838,0.13481,-0.80455,117.45
> view matrix models
> #4,-0.2761,0.95919,-0.061029,203.8,0.88185,0.27807,0.38081,264.92,0.38224,0.051325,-0.92264,115.8
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.2761,0.95919,-0.061029,197.36,0.88185,0.27807,0.38081,182.43,0.38224,0.051325,-0.92264,126.93
> view matrix models
> #4,-0.2761,0.95919,-0.061029,198.16,0.88185,0.27807,0.38081,183.19,0.38224,0.051325,-0.92264,126.16
> view matrix models
> #4,-0.2761,0.95919,-0.061029,198.38,0.88185,0.27807,0.38081,182.98,0.38224,0.051325,-0.92264,125.89
> view matrix models
> #4,-0.2761,0.95919,-0.061029,201.41,0.88185,0.27807,0.38081,182.48,0.38224,0.051325,-0.92264,122.79
> view matrix models
> #4,-0.2761,0.95919,-0.061029,202.3,0.88185,0.27807,0.38081,180.24,0.38224,0.051325,-0.92264,127.28
> view matrix models
> #4,-0.2761,0.95919,-0.061029,205.71,0.88185,0.27807,0.38081,181.27,0.38224,0.051325,-0.92264,125.22
> view matrix models
> #4,-0.2761,0.95919,-0.061029,205.75,0.88185,0.27807,0.38081,181.25,0.38224,0.051325,-0.92264,126.12
> view matrix models
> #4,-0.2761,0.95919,-0.061029,205.73,0.88185,0.27807,0.38081,181.1,0.38224,0.051325,-0.92264,126.12
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> view matrix models
> #4,-0.2761,0.95919,-0.061029,224.98,0.88185,0.27807,0.38081,201.27,0.38224,0.051325,-0.92264,111.57
> view matrix models
> #4,-0.2761,0.95919,-0.061029,250.13,0.88185,0.27807,0.38081,226.98,0.38224,0.051325,-0.92264,87.564
> ui mousemode right select
> select #3/I:1207
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3/Y:59
22 atoms, 24 bonds, 1 residue, 1 model selected
> select #3/I:1207
7 atoms, 6 bonds, 1 residue, 1 model selected
> ui mousemode right "resize markers"
[Repeated 1 time(s)]
> view sel
> ui mousemode right "resize markers"
> style sel sphere
Changed 7 atom styles
> ui mousemode right "mark point"
> color (#!3 & sel) red
> ui mousemode right "mark point"
> ui mousemode right "delete markers"
> view
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCA4_1208_1297.pdb"
Chain information for SMARCA4_1208_1297.pdb #5
---
Chain | Description
A | No description available
> ui mousemode right select
> select clear
> select #5/A:89
7 atoms, 6 bonds, 1 residue, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #5,1,0,0,275.89,0,1,0,-151.99,0,0,1,252.13
> view matrix models #5,1,0,0,181.81,0,1,0,115.59,0,0,1,247.66
> view matrix models #5,1,0,0,286.36,0,1,0,138.7,0,0,1,374.97
> view matrix models #5,1,0,0,328.59,0,1,0,175.7,0,0,1,284.88
> view matrix models #5,1,0,0,329.52,0,1,0,198.67,0,0,1,228.69
> view matrix models #5,1,0,0,303.26,0,1,0,279.23,0,0,1,254.8
> view matrix models #5,1,0,0,368.35,0,1,0,254.83,0,0,1,268.85
> view matrix models #5,1,0,0,310.74,0,1,0,282.73,0,0,1,313.2
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.38928,0.1137,0.91407,302.74,0.72287,0.57734,-0.37967,291.24,-0.57089,0.80855,0.14256,308.08
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.38928,0.1137,0.91407,323.1,0.72287,0.57734,-0.37967,246.24,-0.57089,0.80855,0.14256,318.82
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.41567,0.055398,0.90782,323.66,0.67876,0.64549,-0.35018,245.41,-0.60539,0.76176,0.23071,318.57
> view matrix models
> #5,0.33267,0.065734,0.94075,322.98,0.65635,0.70017,-0.28102,244.64,-0.67716,0.71095,0.18978,318.66
> view matrix models
> #5,0.45675,0.57119,0.682,321.42,0.24939,0.65368,-0.7145,244.37,-0.85393,0.49643,0.15612,319.19
> view matrix models
> #5,-0.36403,-0.32676,0.87219,321.83,0.83319,0.30428,0.46174,245.23,-0.41626,0.89479,0.16149,319.07
> view matrix models
> #5,-0.65117,-0.34687,0.67503,321.11,0.42094,0.57501,0.70155,240.09,-0.63149,0.74097,-0.22842,320.43
> view matrix models
> #5,-0.27532,-0.2123,0.93762,321.32,-0.45561,0.88764,0.067205,235.57,-0.84653,-0.40868,-0.34111,327.23
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.27532,-0.2123,0.93762,346.32,-0.45561,0.88764,0.067205,265.64,-0.84653,-0.40868,-0.34111,337.3
> view matrix models
> #5,-0.27532,-0.2123,0.93762,349.56,-0.45561,0.88764,0.067205,266.36,-0.84653,-0.40868,-0.34111,326.08
> view matrix models
> #5,-0.27532,-0.2123,0.93762,335.01,-0.45561,0.88764,0.067205,272.16,-0.84653,-0.40868,-0.34111,322.94
> view matrix models
> #5,-0.27532,-0.2123,0.93762,335.66,-0.45561,0.88764,0.067205,277.04,-0.84653,-0.40868,-0.34111,320.51
> view matrix models
> #5,-0.27532,-0.2123,0.93762,337.6,-0.45561,0.88764,0.067205,276.42,-0.84653,-0.40868,-0.34111,321.08
> view matrix models
> #5,-0.27532,-0.2123,0.93762,337.66,-0.45561,0.88764,0.067205,276.4,-0.84653,-0.40868,-0.34111,321.11
> view matrix models
> #5,-0.27532,-0.2123,0.93762,337.72,-0.45561,0.88764,0.067205,277.24,-0.84653,-0.40868,-0.34111,320.9
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.30334,-0.15211,0.94066,337.15,-0.55327,0.83185,-0.043906,277.5,-0.77581,-0.53376,-0.33649,322.11
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.30334,-0.15211,0.94066,336.72,-0.55327,0.83185,-0.043906,277.47,-0.77581,-0.53376,-0.33649,319.4
> view matrix models
> #5,-0.30334,-0.15211,0.94066,336.99,-0.55327,0.83185,-0.043906,279.03,-0.77581,-0.53376,-0.33649,318.7
> view matrix models
> #5,-0.30334,-0.15211,0.94066,337.64,-0.55327,0.83185,-0.043906,278.29,-0.77581,-0.53376,-0.33649,319.26
> view matrix models
> #5,-0.30334,-0.15211,0.94066,338.84,-0.55327,0.83185,-0.043906,279,-0.77581,-0.53376,-0.33649,319.15
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
——— End of log from Fri Feb 10 19:56:30 2023 ———
opened ChimeraX session
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCA4_1_350.pdb"
Chain information for SMARCA4_1_350.pdb #6
---
Chain | Description
A | No description available
> ui mousemode right zoom
> ui mousemode right "contour level"
> ui mousemode right select
> select #3/I:350
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #3/I:350
6 atoms, 5 bonds, 1 residue, 1 model selected
> color (#!3 & sel) orange
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,162.87,0,1,0,191.25,0,0,1,123.13
> view matrix models #3,1,0,0,223.93,0,1,0,266,0,0,1,172.58
> view matrix models #3,1,0,0,222.43,0,1,0,264.25,0,0,1,171.45
> undo
[Repeated 2 time(s)]
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '~' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '`' for virtual key 50 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Drag select of 37 residues
> ui mousemode right select
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> ui mousemode right zoom
> ui mousemode right select
> select #6/A:25
4 atoms, 3 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,87.947,0,1,0,147.57,0,0,1,221.62
> view matrix models #6,1,0,0,82.469,0,1,0,169.49,0,0,1,283.44
> view matrix models #6,1,0,0,129.02,0,1,0,202.79,0,0,1,276.98
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,103.49,0,1,0,238.29,0,0,1,310.37
> view matrix models #6,1,0,0,116.54,0,1,0,226.05,0,0,1,280.97
> view matrix models #6,1,0,0,124.9,0,1,0,270.54,0,0,1,241.93
> view matrix models #6,1,0,0,122.09,0,1,0,280.85,0,0,1,255.63
> view matrix models #6,1,0,0,114,0,1,0,264.61,0,0,1,227.29
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,112.08,0,1,0,264.88,0,0,1,236.72
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.49817,0.68937,0.52593,122.29,-0.85904,0.47481,0.19133,262.58,-0.11782,-0.54711,0.82873,230.89
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.49817,0.68937,0.52593,165.34,-0.85904,0.47481,0.19133,313.61,-0.11782,-0.54711,0.82873,231.58
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.43525,0.83608,0.33397,168.6,-0.20163,-0.271,0.94122,295.81,0.87744,-0.47701,0.050629,229.52
> view matrix models
> #6,0.44215,0.8948,0.061831,170.59,-0.039732,-0.049328,0.99799,297.48,0.89606,-0.44372,0.013741,230.01
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.44215,0.8948,0.061831,155.87,-0.039732,-0.049328,0.99799,293.31,0.89606,-0.44372,0.013741,186.7
> view matrix models
> #6,0.44215,0.8948,0.061831,152.72,-0.039732,-0.049328,0.99799,292.31,0.89606,-0.44372,0.013741,157.67
> view matrix models
> #6,0.44215,0.8948,0.061831,152.81,-0.039732,-0.049328,0.99799,292.24,0.89606,-0.44372,0.013741,140.22
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.44215,0.8948,0.061831,154.69,-0.039732,-0.049328,0.99799,291.56,0.89606,-0.44372,0.013741,140.29
> view matrix models
> #6,0.44215,0.8948,0.061831,154.33,-0.039732,-0.049328,0.99799,291.57,0.89606,-0.44372,0.013741,140.21
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.46632,0.88462,0.0011616,154.31,0.074197,-0.04042,0.99642,290.95,0.8815,-0.46456,-0.084484,140.47
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.46632,0.88462,0.0011616,152.01,0.074197,-0.04042,0.99642,289.65,0.8815,-0.46456,-0.084484,135.22
> view matrix models
> #6,0.46632,0.88462,0.0011616,151.05,0.074197,-0.04042,0.99642,284.6,0.8815,-0.46456,-0.084484,132.89
> view matrix models
> #6,0.46632,0.88462,0.0011616,150.48,0.074197,-0.04042,0.99642,281.36,0.8815,-0.46456,-0.084484,135.94
> view matrix models
> #6,0.46632,0.88462,0.0011616,150.96,0.074197,-0.04042,0.99642,282.13,0.8815,-0.46456,-0.084484,135.91
> view matrix models
> #6,0.46632,0.88462,0.0011616,151.07,0.074197,-0.04042,0.99642,282.25,0.8815,-0.46456,-0.084484,137.06
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.46632,0.88462,0.0011616,150.64,0.074197,-0.04042,0.99642,282.27,0.8815,-0.46456,-0.084484,137.13
> view matrix models
> #6,0.46632,0.88462,0.0011616,150.64,0.074197,-0.04042,0.99642,282.27,0.8815,-0.46456,-0.084484,137.12
> ui mousemode right zoom
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> view sel
> view
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/fantist/Desktop/movie1.mp4
Movie saved to /Users/fantist/Desktop/movie1.mp4
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/fantist/Desktop/movie2.mp4
Movie saved to /Users/fantist/Desktop/movie2.mp4
> hide #!3 models
> hide #4 models
> show #4 models
> hide #!2 models
> show #!3 models
> hide #5 models
> hide #6 models
> select add #6
2449 atoms, 2560 bonds, 350 residues, 1 model selected
> select subtract #6
Nothing selected
> hide #4 models
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/fantist/Desktop/movie3.mp4
Movie saved to /Users/fantist/Desktop/movie3.mp4
> select add #3.1
283 pseudobonds, 1 model selected
> hide #!1 models
> hide #3.6 models
> show #3.6 models
> hide #3.6 models
> show #3.6 models
> hide #3.4 models
> show #3.4 models
> hide #3.13 models
> show #3.13 models
> hide #3.12 models
> show #3.12 models
> hide #3.15 models
> show #3.15 models
> hide #3.16 models
> show #3.16 models
> hide #3.18 models
> show #3.18 models
> hide #3.19 models
> show #3.19 models
> hide #3.19 models
> show #3.19 models
> hide #3.17 models
> show #3.17 models
> hide #3.23 models
> show #3.23 models
> hide #3.23 models
> show #3.23 models
> select add #3
34283 atoms, 35402 bonds, 321 pseudobonds, 3895 residues, 4 models selected
> select subtract #3
20 models selected
> show #!2 models
> show #4 models
> show #5 models
> show #6 models
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCA4_518_754.pdb"
Chain information for SMARCA4_518_754.pdb #7
---
Chain | Description
A | No description available
> ui mousemode right select
> select #7/A:39
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,48.949,0,1,0,152.39,0,0,1,158.99
> view matrix models #7,1,0,0,140.35,0,1,0,156.9,0,0,1,310.23
> view matrix models #7,1,0,0,144.48,0,1,0,153.02,0,0,1,300.61
> ui mousemode right zoom
> ui mousemode right select
> select #3/I:517
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!3 & sel) red
Drag select of 19 residues
Drag select of 5 residues
> ui mousemode right zoom
> ui mousemode right select
> select clear
> select #3/I:755
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!3 & sel) blue
Drag select of 17 residues
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,28.109,0,1,0,35.083,0,0,1,21.096
> view matrix models #3,1,0,0,32.08,0,1,0,39.172,0,0,1,21.959
> undo
[Repeated 1 time(s)]
> ui mousemode right zoom
> ui mousemode right select
> select #7/A:33
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,295.65,0,1,0,215.72,0,0,1,382.09
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,333.82,0,1,0,219.12,0,0,1,359.34
> view matrix models #7,1,0,0,333.42,0,1,0,220.15,0,0,1,360.07
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,296.84,0,1,0,245.03,0,0,1,322.75
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.73392,0.67606,0.06569,305.25,-0.1252,0.039595,0.99134,247.19,0.6676,-0.73579,0.1137,303
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.73392,0.67606,0.06569,287.54,-0.1252,0.039595,0.99134,236.24,0.6676,-0.73579,0.1137,300.55
> view matrix models
> #7,0.73392,0.67606,0.06569,284.97,-0.1252,0.039595,0.99134,261.14,0.6676,-0.73579,0.1137,330.01
> view matrix models
> #7,0.73392,0.67606,0.06569,272.96,-0.1252,0.039595,0.99134,254.77,0.6676,-0.73579,0.1137,330.31
> view matrix models
> #7,0.73392,0.67606,0.06569,271.66,-0.1252,0.039595,0.99134,254.62,0.6676,-0.73579,0.1137,331.39
> view matrix models
> #7,0.73392,0.67606,0.06569,280.03,-0.1252,0.039595,0.99134,241.7,0.6676,-0.73579,0.1137,333.47
> undo
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.73392,0.67606,0.06569,273.04,-0.1252,0.039595,0.99134,254.25,0.6676,-0.73579,0.1137,331.46
> view matrix models
> #7,0.73392,0.67606,0.06569,272.37,-0.1252,0.039595,0.99134,254.64,0.6676,-0.73579,0.1137,332.12
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.32431,-0.81942,0.47263,270.56,-0.82245,0.0025827,0.56883,260.46,-0.46733,-0.57319,-0.67309,342.39
> view matrix models
> #7,-0.62287,-0.76477,-0.16479,278.73,-0.67887,0.4237,0.59968,261.63,-0.3888,0.48539,-0.78309,347.66
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.62287,-0.76477,-0.16479,298.9,-0.67887,0.4237,0.59968,257.86,-0.3888,0.48539,-0.78309,340.84
> view matrix models
> #7,-0.62287,-0.76477,-0.16479,280.89,-0.67887,0.4237,0.59968,260.21,-0.3888,0.48539,-0.78309,331.44
> view matrix models
> #7,-0.62287,-0.76477,-0.16479,298.62,-0.67887,0.4237,0.59968,250.86,-0.3888,0.48539,-0.78309,324.31
> view matrix models
> #7,-0.62287,-0.76477,-0.16479,289.13,-0.67887,0.4237,0.59968,248.61,-0.3888,0.48539,-0.78309,312.58
> view matrix models
> #7,-0.62287,-0.76477,-0.16479,290.62,-0.67887,0.4237,0.59968,247.64,-0.3888,0.48539,-0.78309,311.38
> ui mousemode right zoom
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x8' for virtual key 51 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.56678,-0.79705,-0.20849,289.38,-0.7265,0.36417,0.58273,247.74,-0.38854,0.48175,-0.78546,311.33
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.57526,-0.79447,-0.19464,289.6,-0.72226,0.38166,0.57678,247.76,-0.38395,0.47238,-0.79337,311.16
> view matrix models
> #7,-0.55661,-0.80783,-0.1939,289.27,-0.76246,0.40404,0.50537,247.93,-0.32991,0.42914,-0.84083,309.84
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #3,1,0,0,0.52845,0,1,0,0.14292,0,0,1,0.52944
> undo
> ui mousemode right select
> select #7/A:60
5 atoms, 4 bonds, 1 residue, 1 model selected
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.55661,-0.80783,-0.1939,293.61,-0.76246,0.40404,0.50537,248.64,-0.32991,0.42914,-0.84083,313.19
> view matrix models
> #7,-0.55661,-0.80783,-0.1939,292.8,-0.76246,0.40404,0.50537,249.29,-0.32991,0.42914,-0.84083,312.98
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.4746,-0.87968,-0.030259,292.41,-0.80812,0.42185,0.41109,249.34,-0.34886,0.21955,-0.91109,311.34
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.4746,-0.87968,-0.030259,296.27,-0.80812,0.42185,0.41109,248.23,-0.34886,0.21955,-0.91109,318.5
> view matrix models
> #7,-0.4746,-0.87968,-0.030259,294.51,-0.80812,0.42185,0.41109,247.33,-0.34886,0.21955,-0.91109,319.69
> view matrix models
> #7,-0.4746,-0.87968,-0.030259,292.7,-0.80812,0.42185,0.41109,249.12,-0.34886,0.21955,-0.91109,318.81
> view matrix models
> #7,-0.4746,-0.87968,-0.030259,293.36,-0.80812,0.42185,0.41109,249.47,-0.34886,0.21955,-0.91109,320.58
> view matrix models
> #7,-0.4746,-0.87968,-0.030259,293.25,-0.80812,0.42185,0.41109,249.63,-0.34886,0.21955,-0.91109,320.38
> ui mousemode right zoom
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCE1_1_171.pdb"
Chain information for SMARCE1_1_171.pdb #8
---
Chain | Description
A | No description available
> ui mousemode right select
> select #8/A:157
6 atoms, 5 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,256.16,0,1,0,95.269,0,0,1,191.86
> view matrix models #8,1,0,0,251.65,0,1,0,99.81,0,0,1,249.17
> view matrix models #8,1,0,0,210.94,0,1,0,191.02,0,0,1,223.19
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,200.79,0,1,0,169.32,0,0,1,251.44
> ui mousemode right zoom
> ui mousemode right select
> select #3/Q:172
6 atoms, 5 bonds, 1 residue, 1 model selected
> color (#!3 & sel) red
Drag select of 418 residues
> select #8/A:82
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,225.8,0,1,0,209.71,0,0,1,204.65
> view matrix models #8,1,0,0,236.1,0,1,0,178.75,0,0,1,260.02
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.86147,-0.24566,0.44443,233.36,0.50763,0.39333,-0.76655,148.51,0.013506,0.88597,0.46355,283.35
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.86147,-0.24566,0.44443,241.98,0.50763,0.39333,-0.76655,165.75,0.013506,0.88597,0.46355,261.86
> view matrix models
> #8,0.86147,-0.24566,0.44443,239.75,0.50763,0.39333,-0.76655,185.66,0.013506,0.88597,0.46355,263.79
> view matrix models
> #8,0.86147,-0.24566,0.44443,236.9,0.50763,0.39333,-0.76655,183.63,0.013506,0.88597,0.46355,264.43
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.23131,0.97038,-0.069703,272.04,0.39773,-0.028935,0.91705,190.15,0.88787,-0.23985,-0.39264,215.33
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.23131,0.97038,-0.069703,272.04,0.39773,-0.028935,0.91705,257.05,0.88787,-0.23985,-0.39264,195.48
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.23131,0.97038,-0.069703,259.43,0.39773,-0.028935,0.91705,247.71,0.88787,-0.23985,-0.39264,183.64
> view matrix models
> #8,0.23131,0.97038,-0.069703,254.62,0.39773,-0.028935,0.91705,261.89,0.88787,-0.23985,-0.39264,184.77
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.48,0.39773,-0.028935,0.91705,259.88,0.88787,-0.23985,-0.39264,182.38
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.76,0.39773,-0.028935,0.91705,260.5,0.88787,-0.23985,-0.39264,182.37
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.57,0.39773,-0.028935,0.91705,260.17,0.88787,-0.23985,-0.39264,182.23
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.66,0.39773,-0.028935,0.91705,260.8,0.88787,-0.23985,-0.39264,182.22
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.48,0.39773,-0.028935,0.91705,260.42,0.88787,-0.23985,-0.39264,182.05
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.55,0.39773,-0.028935,0.91705,260.73,0.88787,-0.23985,-0.39264,182.01
> view matrix models
> #8,0.23131,0.97038,-0.069703,251.15,0.39773,-0.028935,0.91705,260.62,0.88787,-0.23985,-0.39264,181.82
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCE1_277_411.pdb"
Chain information for SMARCE1_277_411.pdb #9
---
Chain | Description
A | No description available
> ui mousemode right select
> select clear
> ui mousemode right zoom
> ui mousemode right select
> select #9/A:26
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
[Repeated 1 time(s)]
> select #9/A:19
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #9,1,0,0,108.66,0,1,0,118.56,0,0,1,263.52
> view matrix models #9,1,0,0,139.62,0,1,0,195.67,0,0,1,294.13
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #9,1,0,0,181.22,0,1,0,193.03,0,0,1,301.71
> ui mousemode right "rotate selected models"
> view matrix models
> #9,0.66248,-0.0093867,0.74902,179.88,0.31533,0.91051,-0.26748,193.78,-0.67948,0.41339,0.60615,301.19
> view matrix models
> #9,0.25405,-0.96705,0.016443,178.64,0.65125,0.15847,-0.74213,194.01,0.71507,0.19925,0.67005,303.63
> view matrix models
> #9,0.27625,-0.93293,0.23094,178.54,0.95344,0.29627,0.056345,194.06,-0.12099,0.20462,0.97134,301.73
> ui mousemode right "translate selected models"
> view matrix models
> #9,0.27625,-0.93293,0.23094,176.37,0.95344,0.29627,0.056345,194.45,-0.12099,0.20462,0.97134,300.28
> view matrix models
> #9,0.27625,-0.93293,0.23094,196.99,0.95344,0.29627,0.056345,186.93,-0.12099,0.20462,0.97134,298.69
> ui mousemode right "rotate selected models"
> view matrix models
> #9,0.26562,-0.94884,0.17071,197.01,0.95871,0.27862,0.056953,186.92,-0.1016,0.14853,0.98367,298.65
> view matrix models
> #9,-0.12991,-0.93634,-0.32619,196.68,0.50271,0.22136,-0.83563,186.75,0.85464,-0.27254,0.44195,300.53
> view matrix models
> #9,-0.072428,-0.98845,-0.13316,196.57,0.85578,0.0069777,-0.51729,186.92,0.51224,-0.15142,0.84539,299.64
> view matrix models
> #9,-0.082418,-0.9819,-0.17055,196.59,0.80945,0.033878,-0.5862,186.92,0.58137,-0.18637,0.79201,299.79
> view matrix models
> #9,0.072267,-0.99409,0.081006,196.66,0.74851,0.00037777,-0.66313,186.83,0.65918,0.10856,0.74411,300.31
> ui mousemode right "translate selected models"
> view matrix models
> #9,0.072267,-0.99409,0.081006,198.99,0.74851,0.00037777,-0.66313,173.16,0.65918,0.10856,0.74411,292.69
> ui mousemode right "rotate selected models"
> view matrix models
> #9,-0.074315,-0.95424,-0.28966,199.07,0.80597,0.11358,-0.58096,173.33,0.58727,-0.27663,0.76065,292.1
> view matrix models
> #9,0.021694,-0.997,-0.074335,199.03,0.76294,0.06456,-0.64323,173.24,0.6461,-0.042759,0.76205,292.48
> view matrix models
> #9,0.021331,-0.99694,-0.075147,199.03,0.76309,0.064798,-0.64304,173.24,0.64594,-0.043627,0.76214,292.48
> view matrix models
> #9,-0.051626,-0.97984,-0.19298,199,0.81303,0.070976,-0.57788,173.29,0.57993,-0.18673,0.79298,292.16
> ui mousemode right "translate selected models"
> view matrix models
> #9,-0.051626,-0.97984,-0.19298,196.35,0.81303,0.070976,-0.57788,174.73,0.57993,-0.18673,0.79298,295.04
> ui mousemode right "rotate selected models"
> view matrix models
> #9,-0.24768,-0.73662,-0.62932,196.62,0.9579,-0.088836,-0.27301,174.56,0.1452,-0.67045,0.72761,293.69
> ui mousemode right "translate selected models"
> view matrix models
> #9,-0.24768,-0.73662,-0.62932,184.84,0.9579,-0.088836,-0.27301,182,0.1452,-0.67045,0.72761,295.23
> view matrix models
> #9,-0.24768,-0.73662,-0.62932,187.16,0.9579,-0.088836,-0.27301,179.84,0.1452,-0.67045,0.72761,297.88
> view matrix models
> #9,-0.24768,-0.73662,-0.62932,184.54,0.9579,-0.088836,-0.27301,180.47,0.1452,-0.67045,0.72761,298.72
> view matrix models
> #9,-0.24768,-0.73662,-0.62932,186.14,0.9579,-0.088836,-0.27301,181.54,0.1452,-0.67045,0.72761,300.71
> view matrix models
> #9,-0.24768,-0.73662,-0.62932,185.78,0.9579,-0.088836,-0.27301,181.64,0.1452,-0.67045,0.72761,300.78
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> ui mousemode right zoom
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCD1_1_124.pdb"
Chain information for SMARCD1_1_124.pdb #10
---
Chain | Description
A | No description available
> ui mousemode right select
> select #10/A:112
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #10,1,0,0,-39.602,0,1,0,116.41,0,0,1,73.649
> view matrix models #10,1,0,0,96.297,0,1,0,257.43,0,0,1,135.41
> view matrix models #10,1,0,0,195.94,0,1,0,220.88,0,0,1,192.53
> view matrix models #10,1,0,0,334.36,0,1,0,346.64,0,0,1,61.64
> view matrix models #10,1,0,0,209.72,0,1,0,407.32,0,0,1,163.06
> view matrix models #10,1,0,0,231.97,0,1,0,176.06,0,0,1,222.93
> view matrix models #10,1,0,0,220.48,0,1,0,153.53,0,0,1,206.97
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #10,1,0,0,249.18,0,1,0,187.52,0,0,1,168.11
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.47467,0.57247,0.66855,249.79,-0.53901,-0.41142,0.73499,160.96,0.69581,-0.70923,0.11328,167.97
> view matrix models
> #10,-0.14858,0.28448,0.9471,235.91,-0.20877,-0.94517,0.25114,158.03,0.96661,-0.16041,0.19983,180.35
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.14858,0.28448,0.9471,243.95,-0.20877,-0.94517,0.25114,151.89,0.96661,-0.16041,0.19983,214.18
> view matrix models
> #10,-0.14858,0.28448,0.9471,224.93,-0.20877,-0.94517,0.25114,154.3,0.96661,-0.16041,0.19983,190.77
> view matrix models
> #10,-0.14858,0.28448,0.9471,198.82,-0.20877,-0.94517,0.25114,145.54,0.96661,-0.16041,0.19983,182.42
> view matrix models
> #10,-0.14858,0.28448,0.9471,169.31,-0.20877,-0.94517,0.25114,147.44,0.96661,-0.16041,0.19983,182.39
> view matrix models
> #10,-0.14858,0.28448,0.9471,203.7,-0.20877,-0.94517,0.25114,160.54,0.96661,-0.16041,0.19983,201.97
> view matrix models
> #10,-0.14858,0.28448,0.9471,161.39,-0.20877,-0.94517,0.25114,161.73,0.96661,-0.16041,0.19983,214.05
> view matrix models
> #10,-0.14858,0.28448,0.9471,172.76,-0.20877,-0.94517,0.25114,182.93,0.96661,-0.16041,0.19983,237.16
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.14858,0.28448,0.9471,174.44,-0.20877,-0.94517,0.25114,183.43,0.96661,-0.16041,0.19983,234.95
> view matrix models
> #10,-0.14858,0.28448,0.9471,174.37,-0.20877,-0.94517,0.25114,182.74,0.96661,-0.16041,0.19983,236.05
> view matrix models
> #10,-0.14858,0.28448,0.9471,175.23,-0.20877,-0.94517,0.25114,183.04,0.96661,-0.16041,0.19983,235.73
> view matrix models
> #10,-0.14858,0.28448,0.9471,175.32,-0.20877,-0.94517,0.25114,182.57,0.96661,-0.16041,0.19983,236.02
> ui mousemode right zoom
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCD1_178_290.pdb"
Chain information for SMARCD1_178_290.pdb #11
---
Chain | Description
A | No description available
> ui mousemode right select
> select clear
[Repeated 1 time(s)]Drag select of 22 residues
> ui mousemode right zoom
> ui mousemode right select
> select #11/A:4
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #11,1,0,0,165.35,0,1,0,148.91,0,0,1,46.475
> view matrix models #11,1,0,0,91.434,0,1,0,283.51,0,0,1,155.4
> view matrix models #11,1,0,0,194.74,0,1,0,103.83,0,0,1,186.19
> view matrix models #11,1,0,0,192.71,0,1,0,177.26,0,0,1,234.66
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.39426,0.51866,0.75865,182.11,-0.4499,-0.82876,0.33279,187.1,0.80134,-0.21011,0.56009,240.17
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.39426,0.51866,0.75865,180.6,-0.4499,-0.82876,0.33279,183.18,0.80134,-0.21011,0.56009,263.68
> view matrix models
> #11,-0.39426,0.51866,0.75865,181.17,-0.4499,-0.82876,0.33279,177.65,0.80134,-0.21011,0.56009,260.42
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.086098,0.83784,0.53908,180.7,-0.72402,-0.42431,0.54384,173.41,0.68439,-0.34348,0.64314,260.68
> view matrix models
> #11,0.00051841,0.85619,0.51666,180.97,-0.65171,-0.39158,0.64957,173.27,0.75847,-0.33705,0.55779,261.11
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.00051841,0.85619,0.51666,191.87,-0.65171,-0.39158,0.64957,170.74,0.75847,-0.33705,0.55779,258.29
> view matrix models
> #11,0.00051841,0.85619,0.51666,193.91,-0.65171,-0.39158,0.64957,172.45,0.75847,-0.33705,0.55779,266.86
> view matrix models
> #11,0.00051841,0.85619,0.51666,197.26,-0.65171,-0.39158,0.64957,165.64,0.75847,-0.33705,0.55779,257.74
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.00051841,0.85619,0.51666,196.87,-0.65171,-0.39158,0.64957,179.83,0.75847,-0.33705,0.55779,253.5
> view matrix models
> #11,0.00051841,0.85619,0.51666,197.52,-0.65171,-0.39158,0.64957,178.47,0.75847,-0.33705,0.55779,248.7
> view matrix models
> #11,0.00051841,0.85619,0.51666,200.91,-0.65171,-0.39158,0.64957,176.63,0.75847,-0.33705,0.55779,251.77
> view matrix models
> #11,0.00051841,0.85619,0.51666,201.7,-0.65171,-0.39158,0.64957,176.62,0.75847,-0.33705,0.55779,250.18
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.96228,-0.27125,0.020908,206.42,-0.045517,0.23629,0.97062,174.18,-0.26822,0.93305,-0.23972,239.12
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.96228,-0.27125,0.020908,181.05,-0.045517,0.23629,0.97062,174.83,-0.26822,0.93305,-0.23972,243.29
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.71632,-0.65646,0.23651,184.19,-0.12765,0.45652,0.88051,173.2,-0.686,0.60053,-0.41082,244.2
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.71632,-0.65646,0.23651,181.41,-0.12765,0.45652,0.88051,175.34,-0.686,0.60053,-0.41082,250.93
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.99124,-0.035258,0.12729,176.34,0.12579,0.041715,0.99118,178.92,-0.040256,0.99851,-0.036914,250.09
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.99124,-0.035258,0.12729,172.16,0.12579,0.041715,0.99118,182.88,-0.040256,0.99851,-0.036914,256.89
> view matrix models
> #11,-0.99124,-0.035258,0.12729,173.34,0.12579,0.041715,0.99118,185.78,-0.040256,0.99851,-0.036914,254.91
> view matrix models
> #11,-0.99124,-0.035258,0.12729,176.03,0.12579,0.041715,0.99118,184.19,-0.040256,0.99851,-0.036914,258.44
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.96808,0.2082,0.13955,174.46,0.13709,-0.026265,0.99021,184.7,0.20983,0.97773,-0.0031153,259.52
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.96808,0.2082,0.13955,175.04,0.13709,-0.026265,0.99021,185.17,0.20983,0.97773,-0.0031153,263.52
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.81684,0.55979,0.13931,173.28,0.048953,-0.17336,0.98364,185.82,0.57479,0.81029,0.11421,265.88
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.81684,0.55979,0.13931,173.85,0.048953,-0.17336,0.98364,187.14,0.57479,0.81029,0.11421,268.81
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.39581,0.8918,0.21914,173.14,-0.16169,-0.30257,0.93931,187.26,0.90399,0.33636,0.26395,273.02
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.39581,0.8918,0.21914,178.03,-0.16169,-0.30257,0.93931,183.48,0.90399,0.33636,0.26395,278.8
> view matrix models
> #11,-0.39581,0.8918,0.21914,184.49,-0.16169,-0.30257,0.93931,180.01,0.90399,0.33636,0.26395,266.17
> view matrix models
> #11,-0.39581,0.8918,0.21914,190.47,-0.16169,-0.30257,0.93931,177.73,0.90399,0.33636,0.26395,274.32
> view matrix models
> #11,-0.39581,0.8918,0.21914,191.7,-0.16169,-0.30257,0.93931,177.59,0.90399,0.33636,0.26395,272.17
> view matrix models
> #11,-0.39581,0.8918,0.21914,192.46,-0.16169,-0.30257,0.93931,177.16,0.90399,0.33636,0.26395,272.38
> view matrix models
> #11,-0.39581,0.8918,0.21914,192.49,-0.16169,-0.30257,0.93931,177.1,0.90399,0.33636,0.26395,272.75
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.39581,0.8918,0.21914,192.45,-0.16169,-0.30257,0.93931,177.08,0.90399,0.33636,0.26395,272.65
> ui mousemode right zoom
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_1_1-422.pdb"
Chain information for SMARCC2_1_1-422.pdb #12
---
Chain | Description
A | No description available
> ui mousemode right select
> select clear
> ui mousemode right zoom
> ui mousemode right select
> select #12/A:257
12 atoms, 12 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #12,1,0,0,275.73,0,1,0,121.86,0,0,1,128.1
> view matrix models #12,1,0,0,273.79,0,1,0,72.193,0,0,1,146.35
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #12,1,0,0,325.39,0,1,0,232.57,0,0,1,94.112
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #12,1,0,0,315.13,0,1,0,197.66,0,0,1,137.75
> view matrix models #12,1,0,0,327.04,0,1,0,222.6,0,0,1,140.61
> view matrix models #12,1,0,0,322.27,0,1,0,256.79,0,0,1,179.29
> view matrix models #12,1,0,0,263.98,0,1,0,235.92,0,0,1,159.59
> view matrix models #12,1,0,0,263.16,0,1,0,258.8,0,0,1,176.39
> view matrix models #12,1,0,0,244.86,0,1,0,262.45,0,0,1,166.21
> view matrix models #12,1,0,0,244.79,0,1,0,262.84,0,0,1,163.94
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #12,1,0,0,244.83,0,1,0,262.15,0,0,1,163.29
> view matrix models #12,1,0,0,248.11,0,1,0,262.7,0,0,1,166.32
> view matrix models #12,1,0,0,249.72,0,1,0,260.18,0,0,1,164.99
> view matrix models #12,1,0,0,249.46,0,1,0,260.46,0,0,1,164.35
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #12,-0.023645,0.61508,0.78811,239.65,-0.71561,0.54007,-0.44297,248.14,-0.6981,-0.57445,0.42739,151.56
> ui mousemode right "translate selected models"
> view matrix models
> #12,-0.023645,0.61508,0.78811,236,-0.71561,0.54007,-0.44297,262.38,-0.6981,-0.57445,0.42739,158.42
> ui mousemode right "rotate selected models"
> view matrix models
> #12,0.32925,-0.70479,-0.62839,232.31,0.94273,0.20775,0.26095,278.79,-0.05337,-0.67832,0.73283,164.95
> view matrix models
> #12,0.15078,-0.62688,-0.76439,231.11,0.98841,0.081756,0.12793,278.59,-0.0177,-0.77481,0.63194,164.8
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.15078,-0.62688,-0.76439,284.72,0.98841,0.081756,0.12793,228.59,-0.0177,-0.77481,0.63194,207.38
> view matrix models
> #12,0.15078,-0.62688,-0.76439,296.88,0.98841,0.081756,0.12793,233.14,-0.0177,-0.77481,0.63194,215.07
> view matrix models
> #12,0.15078,-0.62688,-0.76439,314.7,0.98841,0.081756,0.12793,227,-0.0177,-0.77481,0.63194,216.7
> view matrix models
> #12,0.15078,-0.62688,-0.76439,308.26,0.98841,0.081756,0.12793,245.32,-0.0177,-0.77481,0.63194,210.06
> view matrix models
> #12,0.15078,-0.62688,-0.76439,295.87,0.98841,0.081756,0.12793,334.52,-0.0177,-0.77481,0.63194,189.48
> view matrix models
> #12,0.15078,-0.62688,-0.76439,295.37,0.98841,0.081756,0.12793,350.81,-0.0177,-0.77481,0.63194,189.47
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.15078,-0.62688,-0.76439,294.06,0.98841,0.081756,0.12793,336.96,-0.0177,-0.77481,0.63194,183.31
> view matrix models
> #12,0.15078,-0.62688,-0.76439,320.74,0.98841,0.081756,0.12793,284.41,-0.0177,-0.77481,0.63194,157.04
> view matrix models
> #12,0.15078,-0.62688,-0.76439,296.14,0.98841,0.081756,0.12793,275.73,-0.0177,-0.77481,0.63194,184.04
> view matrix models
> #12,0.15078,-0.62688,-0.76439,305.03,0.98841,0.081756,0.12793,262.02,-0.0177,-0.77481,0.63194,187.12
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #12,0.29456,-0.72411,-0.62362,305.59,0.95558,0.23033,0.18391,262.82,0.010464,-0.65009,0.75979,188.29
> view matrix models
> #12,0.47506,-0.75852,-0.44606,307.1,0.87995,0.40697,0.2451,263.31,-0.0043839,-0.50894,0.86079,189.13
> ui mousemode right "translate selected models"
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.47506,-0.75852,-0.44606,295.69,0.87995,0.40697,0.2451,253.89,-0.0043839,-0.50894,0.86079,170.45
> view matrix models
> #12,0.47506,-0.75852,-0.44606,286.42,0.87995,0.40697,0.2451,247.14,-0.0043839,-0.50894,0.86079,177.07
> view matrix models
> #12,0.47506,-0.75852,-0.44606,281.48,0.87995,0.40697,0.2451,251.04,-0.0043839,-0.50894,0.86079,177.35
> view matrix models
> #12,0.47506,-0.75852,-0.44606,281.44,0.87995,0.40697,0.2451,251.08,-0.0043839,-0.50894,0.86079,177
> view matrix models
> #12,0.47506,-0.75852,-0.44606,281.55,0.87995,0.40697,0.2451,250.77,-0.0043839,-0.50894,0.86079,176.59
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.47506,-0.75852,-0.44606,281.47,0.87995,0.40697,0.2451,251.26,-0.0043839,-0.50894,0.86079,176.61
> view matrix models
> #12,0.47506,-0.75852,-0.44606,282.03,0.87995,0.40697,0.2451,251.13,-0.0043839,-0.50894,0.86079,176.99
> view matrix models
> #12,0.47506,-0.75852,-0.44606,282.15,0.87995,0.40697,0.2451,251.35,-0.0043839,-0.50894,0.86079,176.24
> ui mousemode right zoom
> ui mousemode right select
> select #3/N:515
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/N:515
8 atoms, 7 bonds, 1 residue, 1 model selected
> color (#!3 & sel) red
> ui mousemode right zoom
> ui mousemode right select
> select #3/N:602
7 atoms, 6 bonds, 1 residue, 1 model selected
> color (#!3 & sel) blue
> ui mousemode right zoom
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_1_516_601.pdb"
Chain information for SMARCC2_1_516_601.pdb #13
---
Chain | Description
A | No description available
> ui mousemode right select
> select #13/A:42
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #13,1,0,0,161.99,0,1,0,193.45,0,0,1,297.13
> view matrix models #13,1,0,0,230.22,0,1,0,369.91,0,0,1,163.63
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.14248,-0.064647,0.98768,196.34,-0.51703,0.85576,-0.018574,361.27,-0.84402,-0.51331,-0.15535,165.71
> view matrix models
> #13,-0.2365,-0.46264,0.85442,197.64,0.56588,0.64925,0.50818,374.21,-0.78984,0.60368,0.10825,159.78
> view matrix models
> #13,-0.1829,0.52095,-0.83376,218.74,-0.89635,-0.43675,-0.076261,359.06,-0.40387,0.73339,0.54683,160.37
> view matrix models
> #13,0.93165,-0.067454,-0.35703,234.06,-0.35859,-0.3292,-0.87352,379.31,-0.058613,0.94185,-0.33089,177.95
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.93165,-0.067454,-0.35703,224.51,-0.35859,-0.3292,-0.87352,318.05,-0.058613,0.94185,-0.33089,209.05
> view matrix models
> #13,0.93165,-0.067454,-0.35703,224.52,-0.35859,-0.3292,-0.87352,308.89,-0.058613,0.94185,-0.33089,208.03
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.93165,-0.067454,-0.35703,225.39,-0.35859,-0.3292,-0.87352,308.24,-0.058613,0.94185,-0.33089,208.5
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #13,0.91624,-0.13111,-0.37857,225.6,-0.40015,-0.2532,-0.88078,307.37,0.019623,0.95849,-0.28445,209.23
> view matrix models
> #13,0.72665,-0.12215,-0.67606,226.21,-0.66748,-0.35848,-0.65265,299.75,-0.16263,0.92551,-0.34202,206.83
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.72665,-0.12215,-0.67606,239.61,-0.66748,-0.35848,-0.65265,286.01,-0.16263,0.92551,-0.34202,200.53
> view matrix models
> #13,0.72665,-0.12215,-0.67606,245.73,-0.66748,-0.35848,-0.65265,280.52,-0.16263,0.92551,-0.34202,196.68
> view matrix models
> #13,0.72665,-0.12215,-0.67606,246.64,-0.66748,-0.35848,-0.65265,278.02,-0.16263,0.92551,-0.34202,198.18
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #13,0.33679,-0.21803,-0.91599,243.18,-0.93709,-0.17247,-0.3035,267.84,-0.091804,0.96058,-0.2624,198.27
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.33679,-0.21803,-0.91599,245.3,-0.93709,-0.17247,-0.3035,260.59,-0.091804,0.96058,-0.2624,200.75
> view matrix models
> #13,0.33679,-0.21803,-0.91599,245.36,-0.93709,-0.17247,-0.3035,260.44,-0.091804,0.96058,-0.2624,200.81
> view matrix models
> #13,0.33679,-0.21803,-0.91599,244.21,-0.93709,-0.17247,-0.3035,260.2,-0.091804,0.96058,-0.2624,198.68
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #13,0.35563,-0.29781,-0.88591,244.37,-0.92191,-0.26762,-0.28012,260.43,-0.15366,0.91635,-0.36973,199.16
> view matrix models
> #13,0.3649,-0.24646,-0.89783,244.55,-0.90746,-0.30984,-0.28376,260.87,-0.20825,0.91829,-0.33671,197.72
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.3649,-0.24646,-0.89783,243.9,-0.90746,-0.30984,-0.28376,260.51,-0.20825,0.91829,-0.33671,199.91
> ui mousemode right "rotate selected models"
> view matrix models
> #13,0.34678,-0.27337,-0.89722,243.64,-0.91359,-0.31501,-0.25713,260.06,-0.21234,0.90887,-0.35899,200.17
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.34678,-0.27337,-0.89722,244.2,-0.91359,-0.31501,-0.25713,260,-0.21234,0.90887,-0.35899,199.46
> view matrix models
> #13,0.34678,-0.27337,-0.89722,244.58,-0.91359,-0.31501,-0.25713,262.61,-0.21234,0.90887,-0.35899,199.12
> view matrix models
> #13,0.34678,-0.27337,-0.89722,244.67,-0.91359,-0.31501,-0.25713,262.67,-0.21234,0.90887,-0.35899,199.11
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.34678,-0.27337,-0.89722,245.28,-0.91359,-0.31501,-0.25713,262.54,-0.21234,0.90887,-0.35899,200.03
> ui mousemode right zoom
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> hide #4 models
> hide #7 models
> hide #6 models
> hide #5 models
> hide #8 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> hide #!2 models
> ui mousemode right select
> select #3/N:703
8 atoms, 7 bonds, 1 residue, 1 model selected
> color (#!3 & sel) red
> select #3/N:858
8 atoms, 7 bonds, 1 residue, 1 model selected
> color (#!3 & sel) blue
> ui mousemode right zoom
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_1_704_857.pdb"
Chain information for SMARCC2_1_704_857.pdb #14
---
Chain | Description
A | No description available
> ui mousemode right select
> select #14/A:8
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #14,1,0,0,206,0,1,0,244.28,0,0,1,173.06
> view matrix models #14,1,0,0,167.73,0,1,0,264.4,0,0,1,176.13
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #14,1,0,0,175.55,0,1,0,293.89,0,0,1,208.09
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.5544,-0.26602,0.78859,189.01,-0.78616,-0.14358,-0.60112,295.79,0.27313,-0.95322,-0.12953,200.87
> view matrix models
> #14,-0.54779,0.49162,0.67693,188.65,-0.32995,0.61659,-0.71481,292.58,-0.7688,-0.61492,-0.17555,207.37
> view matrix models
> #14,-0.39888,0.11893,0.90926,188.68,-0.39998,0.86969,-0.28922,295.06,-0.82518,-0.47905,-0.29933,207.19
> view matrix models
> #14,-0.37717,0.072997,0.92326,188.59,-0.40003,0.88626,-0.23349,295.32,-0.83529,-0.4574,-0.30507,207.23
> view matrix models
> #14,0.24732,0.16321,0.95509,184.8,-0.9255,0.33162,0.18299,300.44,-0.28686,-0.92919,0.23307,206.11
> ui mousemode right "translate selected models"
> view matrix models
> #14,0.24732,0.16321,0.95509,194.37,-0.9255,0.33162,0.18299,298.02,-0.28686,-0.92919,0.23307,218.37
> view matrix models
> #14,0.24732,0.16321,0.95509,200.62,-0.9255,0.33162,0.18299,301.7,-0.28686,-0.92919,0.23307,218.15
> view matrix models
> #14,0.24732,0.16321,0.95509,200.32,-0.9255,0.33162,0.18299,302.85,-0.28686,-0.92919,0.23307,215.14
> view matrix models
> #14,0.24732,0.16321,0.95509,213.5,-0.9255,0.33162,0.18299,308.13,-0.28686,-0.92919,0.23307,228.24
> undo
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.37155,0.090622,0.92398,204.09,-0.77464,0.51831,-0.36233,299.42,-0.51174,-0.85038,-0.12238,214.94
> ui mousemode right "translate selected models"
> view matrix models
> #14,-0.37155,0.090622,0.92398,211.49,-0.77464,0.51831,-0.36233,293.43,-0.51174,-0.85038,-0.12238,215.03
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.46611,0.084143,0.88071,211.89,-0.71635,0.54831,-0.43151,292.75,-0.51921,-0.83203,-0.1953,214.75
> undo
> view matrix models
> #14,-0.49085,0.10625,0.86474,211.98,-0.82976,0.24561,-0.50118,293.07,-0.26564,-0.96353,-0.032394,213.85
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #14,-0.49085,0.10625,0.86474,212.42,-0.82976,0.24561,-0.50118,292.29,-0.26564,-0.96353,-0.032394,213.55
> view matrix models
> #14,-0.49085,0.10625,0.86474,212.89,-0.82976,0.24561,-0.50118,291.75,-0.26564,-0.96353,-0.032394,212.83
> view matrix models
> #14,-0.49085,0.10625,0.86474,212.22,-0.82976,0.24561,-0.50118,292.28,-0.26564,-0.96353,-0.032394,212.43
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #14,-0.49085,0.10625,0.86474,213.02,-0.82976,0.24561,-0.50118,292.02,-0.26564,-0.96353,-0.032394,212.23
> view matrix models
> #14,-0.49085,0.10625,0.86474,212.82,-0.82976,0.24561,-0.50118,293.3,-0.26564,-0.96353,-0.032394,212.01
> view matrix models
> #14,-0.49085,0.10625,0.86474,213.19,-0.82976,0.24561,-0.50118,293.28,-0.26564,-0.96353,-0.032394,211.91
> view matrix models
> #14,-0.49085,0.10625,0.86474,213.18,-0.82976,0.24561,-0.50118,293.33,-0.26564,-0.96353,-0.032394,211.91
> view matrix models
> #14,-0.49085,0.10625,0.86474,213.2,-0.82976,0.24561,-0.50118,293.32,-0.26564,-0.96353,-0.032394,211.89
> view matrix models
> #14,-0.49085,0.10625,0.86474,213.19,-0.82976,0.24561,-0.50118,293.35,-0.26564,-0.96353,-0.032394,211.89
> view matrix models
> #14,-0.49085,0.10625,0.86474,213.2,-0.82976,0.24561,-0.50118,293.35,-0.26564,-0.96353,-0.032394,211.89
> ui mousemode right zoom
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> hide #14 models
> show #14 models
> show #13 models
> show #12 models
> show #11 models
> show #10 models
> show #9 models
> show #8 models
> show #7 models
> show #6 models
> show #5 models
> show #4 models
> show #!2 models
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_1_953_1214pdb.pdb"
Chain information for SMARCC2_1_953_1214pdb.pdb #15
---
Chain | Description
A | No description available
> ui mousemode right select
> select #15/A:223
5 atoms, 4 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #15,1,0,0,113.18,0,1,0,51.299,0,0,1,299.55
> view matrix models #15,1,0,0,149.78,0,1,0,146.59,0,0,1,308.2
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #15,-0.98771,0.050639,0.14784,171.59,-0.098637,0.53175,-0.84114,164.95,-0.12121,-0.84539,-0.52022,340.67
> view matrix models
> #15,-0.89698,0.42678,0.11526,169.17,0.32391,0.81195,-0.48561,152.05,-0.30084,-0.39825,-0.86654,346.77
> ui mousemode right "translate selected models"
> view matrix models
> #15,-0.89698,0.42678,0.11526,228.98,0.32391,0.81195,-0.48561,137.51,-0.30084,-0.39825,-0.86654,314.59
> ui mousemode right "rotate selected models"
> view matrix models
> #15,-0.97459,-0.16845,0.14761,232.34,-0.20319,0.3877,-0.89911,153.44,0.094225,-0.90627,-0.41207,304.22
> ui mousemode right "translate selected models"
> view matrix models
> #15,-0.97459,-0.16845,0.14761,260.79,-0.20319,0.3877,-0.89911,175.93,0.094225,-0.90627,-0.41207,337.92
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #15,-0.97459,-0.16845,0.14761,259.1,-0.20319,0.3877,-0.89911,176.56,0.094225,-0.90627,-0.41207,338.96
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #15,-0.97459,-0.16845,0.14761,259.11,-0.20319,0.3877,-0.89911,176.56,0.094225,-0.90627,-0.41207,338.98
> view matrix models
> #15,-0.97459,-0.16845,0.14761,257.5,-0.20319,0.3877,-0.89911,179.69,0.094225,-0.90627,-0.41207,339.63
> undo
> view matrix models
> #15,-0.97459,-0.16845,0.14761,259.13,-0.20319,0.3877,-0.89911,176.52,0.094225,-0.90627,-0.41207,338.97
> ui mousemode right zoom
> ui mousemode right select
> select #3/O:423
10 atoms, 10 bonds, 1 residue, 1 model selected
> color (#!3 & sel) cyan
Drag select of 6 residues
> ui mousemode right zoom
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_2_1-422.pdb"
Chain information for SMARCC2_2_1-422.pdb #16
---
Chain | Description
A | No description available
> ui mousemode right select
> select #16/A:10
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #16,1,0,0,312.82,0,1,0,252.81,0,0,1,121.24
> view matrix models #16,1,0,0,81.043,0,1,0,289.71,0,0,1,275.13
> view matrix models #16,1,0,0,150.77,0,1,0,338.53,0,0,1,256.03
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #16,1,0,0,272.64,0,1,0,295.39,0,0,1,178.27
> ui mousemode right "rotate selected models"
> view matrix models
> #16,0.99586,0.087574,0.024268,273.33,-0.087852,0.99608,0.010619,294.18,-0.023243,-0.012707,0.99965,177.85
> view matrix models
> #16,-0.20087,0.78807,0.58189,262.73,-0.9776,-0.12314,-0.17069,272.68,-0.062861,-0.60314,0.79516,172.4
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.20087,0.78807,0.58189,243.78,-0.9776,-0.12314,-0.17069,315.59,-0.062861,-0.60314,0.79516,176.2
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.20087,0.78807,0.58189,230.78,-0.9776,-0.12314,-0.17069,343.73,-0.062861,-0.60314,0.79516,185.01
> view matrix models
> #16,-0.20087,0.78807,0.58189,213.21,-0.9776,-0.12314,-0.17069,342.13,-0.062861,-0.60314,0.79516,181.62
> view matrix models
> #16,-0.20087,0.78807,0.58189,217.9,-0.9776,-0.12314,-0.17069,336.08,-0.062861,-0.60314,0.79516,190.8
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.20087,0.78807,0.58189,212.86,-0.9776,-0.12314,-0.17069,337.51,-0.062861,-0.60314,0.79516,189.97
> view matrix models
> #16,-0.20087,0.78807,0.58189,214.12,-0.9776,-0.12314,-0.17069,334.75,-0.062861,-0.60314,0.79516,192.67
> view matrix models
> #16,-0.20087,0.78807,0.58189,211.67,-0.9776,-0.12314,-0.17069,334.47,-0.062861,-0.60314,0.79516,190.8
> view matrix models
> #16,-0.20087,0.78807,0.58189,212.21,-0.9776,-0.12314,-0.17069,334.34,-0.062861,-0.60314,0.79516,191.31
> view matrix models
> #16,-0.20087,0.78807,0.58189,212.35,-0.9776,-0.12314,-0.17069,334.15,-0.062861,-0.60314,0.79516,190.65
> view matrix models
> #16,-0.20087,0.78807,0.58189,211.69,-0.9776,-0.12314,-0.17069,334.23,-0.062861,-0.60314,0.79516,192.24
> view matrix models
> #16,-0.20087,0.78807,0.58189,210.83,-0.9776,-0.12314,-0.17069,332.89,-0.062861,-0.60314,0.79516,191.77
> view matrix models
> #16,-0.20087,0.78807,0.58189,211.16,-0.9776,-0.12314,-0.17069,332.83,-0.062861,-0.60314,0.79516,191.81
> ui mousemode right zoom
> ui mousemode right select
> select #3/O:545
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!3 & sel) red
> ui mousemode right zoom
> ui mousemode right select
> select #3/O:598
7 atoms, 6 bonds, 1 residue, 1 model selected
> color (#!3 & sel) purple
> color (#!3 & sel) blue
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_2_516_601.pdb"
Chain information for SMARCC2_2_516_601.pdb #17
---
Chain | Description
A | No description available
> ui mousemode right zoom
[Repeated 1 time(s)]
> ui mousemode right select
> select #17/A:31
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #17,1,0,0,347.59,0,1,0,313.41,0,0,1,163.35
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #17,1,0,0,293.69,0,1,0,346.46,0,0,1,221.54
> ui mousemode right "rotate selected models"
> view matrix models
> #17,0.99854,-0.043842,-0.03166,294.23,0.046894,0.99356,0.10314,345.92,0.026934,-0.10447,0.99416,222.41
> view matrix models
> #17,0.62649,0.77192,0.10795,283.2,-0.75914,0.5729,0.30901,329.83,0.17669,-0.27554,0.94491,226.29
> view matrix models
> #17,0.70387,0.67131,0.23217,283.2,-0.70032,0.60114,0.38495,329.77,0.11885,-0.43355,0.89326,226.42
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.70387,0.67131,0.23217,281.28,-0.70032,0.60114,0.38495,296.18,0.11885,-0.43355,0.89326,233.35
> view matrix models
> #17,0.70387,0.67131,0.23217,243.63,-0.70032,0.60114,0.38495,259.65,0.11885,-0.43355,0.89326,226.82
> hide #!2 models
> hide #4 models
> hide #5 models
> hide #6 models
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> hide #14 models
> hide #15 models
> hide #16 models
> hide #17 models
> show #17 models
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.70387,0.67131,0.23217,244.53,-0.70032,0.60114,0.38495,260.17,0.11885,-0.43355,0.89326,227.2
> ui mousemode right "rotate selected models"
> view matrix models
> #17,-0.1005,0.92638,0.36292,227.49,-0.20626,-0.37624,0.90327,264.9,0.97332,0.015924,0.22889,250.34
> view matrix models
> #17,0.032339,0.96493,0.26051,231.17,-0.27727,-0.24176,0.92988,262.86,0.96025,-0.1023,0.25973,250.03
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.032339,0.96493,0.26051,239.75,-0.27727,-0.24176,0.92988,228.61,0.96025,-0.1023,0.25973,219.72
> view matrix models
> #17,0.032339,0.96493,0.26051,242.14,-0.27727,-0.24176,0.92988,225.03,0.96025,-0.1023,0.25973,229.59
> view matrix models
> #17,0.032339,0.96493,0.26051,238.82,-0.27727,-0.24176,0.92988,224.36,0.96025,-0.1023,0.25973,226.02
> view matrix models
> #17,0.032339,0.96493,0.26051,239.17,-0.27727,-0.24176,0.92988,221.4,0.96025,-0.1023,0.25973,230.08
> view matrix models
> #17,0.032339,0.96493,0.26051,236.52,-0.27727,-0.24176,0.92988,219.78,0.96025,-0.1023,0.25973,228.02
> view matrix models
> #17,0.032339,0.96493,0.26051,236.68,-0.27727,-0.24176,0.92988,219.18,0.96025,-0.1023,0.25973,228.3
> ui mousemode right zoom
> show #16 models
> show #15 models
> show #14 models
> show #13 models
> show #12 models
> show #11 models
> show #10 models
> show #9 models
> show #8 models
> show #7 models
> show #6 models
> show #5 models
> show #4 models
> show #!2 models
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
> open 7VRB fromDatabase pdb
Summary of feedback from opening 7VRB fetched from pdb
---
note | Fetching compressed mmCIF 7vrb from
http://files.rcsb.org/download/7vrb.cif
7vrb title:
Structure of the Human BRG1/SS18 complex [more info...]
Chain information for 7vrb #18
---
Chain | Description | UniProt
A B C D | SMARCA4 protein,Protein SSXT | B9EGQ8_HUMAN 3-44, SSXT_HUMAN 56-143
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.032339,0.96493,0.26051,376.69,-0.27727,-0.24176,0.92988,266.06,0.96025,-0.1023,0.25973,397.48
> undo
> view matrix models
> #17,0.032339,0.96493,0.26051,256.16,-0.27727,-0.24176,0.92988,227.19,0.96025,-0.1023,0.25973,217.39
> undo
> ui mousemode right zoom
> select #18/A:1-121
875 atoms, 889 bonds, 1 pseudobond, 112 residues, 2 models selected
> select #18/B:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> select #18/C:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> select #18/D:2-121
814 atoms, 826 bonds, 1 pseudobond, 105 residues, 2 models selected
> color (#!18 & sel) red
> select #18/B:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> color (#!18 & sel) orange red
> select #18/C:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> color (#!18 & sel) cyan
> select #18/B:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> select #18/B:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> select #18/B:2-121
852 atoms, 866 bonds, 1 pseudobond, 109 residues, 2 models selected
> hide #!18 target m
> undo
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> delete /B,C,D
> ui mousemode right select
Drag select of 27 residues
Drag select of 39 residues
> color sel magenta
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #18,1,0,0,235.42,0,1,0,3.9512,0,0,1,181.33
> view matrix models #18,1,0,0,258.12,0,1,0,134.62,0,0,1,99.841
> view matrix models #18,1,0,0,341.02,0,1,0,230.06,0,0,1,-38.705
> view matrix models #18,1,0,0,380.45,0,1,0,328.76,0,0,1,-32.416
> ui mousemode right zoom
> hide #17 models
> hide #16 models
> hide #15 models
> hide #14 models
> hide #13 models
> hide #12 models
> hide #11 models
> hide #10 models
> hide #9 models
> hide #8 models
> hide #7 models
> hide #5 models
> hide #4 models
> hide #!2 models
> ui mousemode right "translate selected models"
> view matrix models #18,1,0,0,206.89,0,1,0,225.67,0,0,1,33.081
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #18,1,0,0,179.1,0,1,0,296.57,0,0,1,89.151
> ui mousemode right "rotate selected models"
> view matrix models
> #18,-0.26729,-0.056862,-0.96194,157.61,-0.94546,-0.17739,0.2732,253.02,-0.18617,0.9825,-0.0063451,110.02
> ui mousemode right "translate selected models"
> view matrix models
> #18,-0.26729,-0.056862,-0.96194,164.02,-0.94546,-0.17739,0.2732,255.12,-0.18617,0.9825,-0.0063451,114.71
> ui mousemode right "rotate selected models"
> view matrix models
> #18,-0.55834,0.64794,-0.5181,153.81,-0.79986,-0.25468,0.54348,254.03,0.22019,0.71785,0.66046,112.79
> view matrix models
> #18,-0.62325,0.69085,-0.36645,149.58,-0.69561,-0.27562,0.66345,254.85,0.35734,0.6684,0.65234,116.59
> view matrix models
> #18,-0.78375,0.5359,-0.31394,142.48,-0.53761,-0.33225,0.77498,257.11,0.311,0.77616,0.5485,117.99
> ui mousemode right "translate selected models"
> view matrix models
> #18,-0.78375,0.5359,-0.31394,117.17,-0.53761,-0.33225,0.77498,272.63,0.311,0.77616,0.5485,133.75
> view matrix models
> #18,-0.78375,0.5359,-0.31394,116.84,-0.53761,-0.33225,0.77498,253.24,0.311,0.77616,0.5485,149.71
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #18,-0.78375,0.5359,-0.31394,117.58,-0.53761,-0.33225,0.77498,252.36,0.311,0.77616,0.5485,149.13
> view matrix models
> #18,-0.78375,0.5359,-0.31394,118.24,-0.53761,-0.33225,0.77498,252,0.311,0.77616,0.5485,149.51
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SS18_102_418.pdb"
Chain information for SS18_102_418.pdb #19
---
Chain | Description
A | No description available
> ui mousemode right zoom
> ui mousemode right select
> select #19/A:192
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #19,1,0,0,128.2,0,1,0,334.7,0,0,1,124.31
> ui mousemode right zoom
[Repeated 1 time(s)]
> ui mousemode right "translate selected models"
> view matrix models #19,1,0,0,157.94,0,1,0,427.09,0,0,1,102.91
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> ui mousemode right select
> select #18/A:9
10 atoms, 10 bonds, 1 residue, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #18,-0.78375,0.5359,-0.31394,98.5,-0.53761,-0.33225,0.77498,248.28,0.311,0.77616,0.5485,136.04
> ui mousemode right "rotate selected models"
> view matrix models
> #18,0.62205,-0.51389,0.59074,115.27,-0.74324,-0.62485,0.23907,248.94,0.24627,-0.58777,-0.77063,145.12
> view matrix models
> #18,0.97351,-0.05572,0.22174,136.34,-0.070385,-0.99579,0.058787,268.91,0.21753,-0.072838,-0.97333,152.41
> view matrix models
> #18,0.97862,-0.021079,0.20458,137.1,-0.029822,-0.99876,0.039748,270.43,0.20349,-0.044999,-0.97804,152.32
> view matrix models
> #18,0.97506,-0.046542,0.21699,136.55,-0.059878,-0.99667,0.055292,269.28,0.21369,-0.066906,-0.97461,152.37
> ui mousemode right "translate selected models"
> view matrix models
> #18,0.97506,-0.046542,0.21699,171.71,-0.059878,-0.99667,0.055292,277.8,0.21369,-0.066906,-0.97461,177.63
> ui mousemode right "rotate selected models"
> view matrix models
> #18,0.78317,-0.54178,0.30514,160.01,-0.17464,-0.66264,-0.72829,291.12,0.59678,0.51708,-0.61358,187.94
> view matrix models
> #18,0.95376,-0.18163,0.23949,169.47,-0.089078,-0.93179,-0.35191,284.66,0.28707,0.31431,-0.90488,182
> view matrix models
> #18,0.94073,-0.21233,0.26446,168.37,-0.084654,-0.9021,-0.42315,286.31,0.32842,0.37568,-0.86661,183.11
> ui mousemode right "translate selected models"
> view matrix models
> #18,0.94073,-0.21233,0.26446,172.61,-0.084654,-0.9021,-0.42315,286.92,0.32842,0.37568,-0.86661,177.64
> view matrix models
> #18,0.94073,-0.21233,0.26446,171.78,-0.084654,-0.9021,-0.42315,286.18,0.32842,0.37568,-0.86661,177.06
> view matrix models
> #18,0.94073,-0.21233,0.26446,171.64,-0.084654,-0.9021,-0.42315,286.19,0.32842,0.37568,-0.86661,177.26
> view matrix models
> #18,0.94073,-0.21233,0.26446,176.34,-0.084654,-0.9021,-0.42315,289.46,0.32842,0.37568,-0.86661,175.73
> undo
> ui mousemode right zoom
> ui mousemode right select
Drag select of 13 residues
> ui mousemode right "translate selected models"
> view matrix models #19,1,0,0,235.29,0,1,0,350.72,0,0,1,144.47
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #19,1,0,0,241.45,0,1,0,303.33,0,0,1,169.96
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #19,-0.36632,0.74061,0.5633,241.63,-0.50879,0.34743,-0.78767,300.63,-0.77907,-0.57514,0.24955,167.1
> view matrix models
> #19,-0.87853,0.43959,0.18693,239.9,-0.11503,0.18513,-0.97596,300.91,-0.46363,-0.87891,-0.11208,166.86
> ui mousemode right "translate selected models"
> view matrix models
> #19,-0.87853,0.43959,0.18693,221.93,-0.11503,0.18513,-0.97596,306.54,-0.46363,-0.87891,-0.11208,127.23
> ui mousemode right "rotate selected models"
> view matrix models
> #19,-0.51093,0.77355,0.37493,223.99,0.82563,0.56303,-0.036536,308.23,-0.23936,0.29089,-0.92633,135.73
> view matrix models
> #19,-0.57894,0.10987,0.80793,219.34,0.32634,0.93928,0.10611,309.01,-0.74721,0.32509,-0.57964,134.2
> view matrix models
> #19,-0.32807,0.93204,0.15387,225.67,-0.31013,0.047588,-0.9495,305.39,-0.89229,-0.35922,0.27344,128.37
> ui mousemode right "translate selected models"
> view matrix models
> #19,-0.32807,0.93204,0.15387,179.38,-0.31013,0.047588,-0.9495,273.84,-0.89229,-0.35922,0.27344,69.2
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #19,-0.32807,0.93204,0.15387,144.46,-0.31013,0.047588,-0.9495,239.25,-0.89229,-0.35922,0.27344,108.55
> view matrix models
> #19,-0.32807,0.93204,0.15387,144.61,-0.31013,0.047588,-0.9495,244.43,-0.89229,-0.35922,0.27344,108.56
> view matrix models
> #19,-0.32807,0.93204,0.15387,141.82,-0.31013,0.047588,-0.9495,243.91,-0.89229,-0.35922,0.27344,110.45
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #19,-0.32807,0.93204,0.15387,141.82,-0.31013,0.047588,-0.9495,243.77,-0.89229,-0.35922,0.27344,110.44
> view matrix models
> #19,-0.32807,0.93204,0.15387,141.82,-0.31013,0.047588,-0.9495,243.67,-0.89229,-0.35922,0.27344,110.55
> ui mousemode right zoom
> show #!2 models
> show #4 models
> show #5 models
> show #7 models
> show #8 models
> show #9 models
> show #10 models
> show #11 models
> show #12 models
> show #13 models
> show #14 models
> show #15 models
> show #16 models
> show #17 models
> ui mousemode right select
> select #3/O:867
5 atoms, 4 bonds, 1 residue, 1 model selected
> color (#!3 & sel) red
> color (#!3 & sel) blue
> select #3/O:717
11 atoms, 10 bonds, 1 residue, 1 model selected
> color (#!3 & sel) orange red
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_2_718_866.pdb"
Chain information for SMARCC2_2_718_866.pdb #20
---
Chain | Description
A | No description available
> ui mousemode right zoom
> ui mousemode right select
Drag select of 9 residues
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #20,1,0,0,316.79,0,1,0,308.07,0,0,1,30.559
> view matrix models #20,1,0,0,282.32,0,1,0,380.56,0,0,1,84.53
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #20,1,0,0,128.27,0,1,0,340.67,0,0,1,172.6
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #20,1,0,0,71.727,0,1,0,305.82,0,0,1,204.01
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #20,1,0,0,109.05,0,1,0,319.75,0,0,1,162.23
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #20,-0.048527,0.99806,-0.039006,105.9,-0.96761,-0.056661,-0.246,315.56,-0.24773,0.025805,0.96849,161.35
> view matrix models
> #20,-0.1298,0.99144,-0.013985,105.7,-0.9869,-0.13055,-0.094792,315.89,-0.095807,0.0014972,0.9954,161.91
> view matrix models
> #20,-0.43151,0.88375,0.18106,105.23,-0.8444,-0.32506,-0.42581,315.36,-0.31746,-0.33663,0.88651,160.77
> ui mousemode right "translate selected models"
> view matrix models
> #20,-0.43151,0.88375,0.18106,142.3,-0.8444,-0.32506,-0.42581,269.56,-0.31746,-0.33663,0.88651,198.52
> view matrix models
> #20,-0.43151,0.88375,0.18106,135.78,-0.8444,-0.32506,-0.42581,250.21,-0.31746,-0.33663,0.88651,191.47
> ui mousemode right "rotate selected models"
> view matrix models
> #20,-0.28927,0.24455,0.92548,138.07,-0.56324,-0.82522,0.042007,252.23,0.774,-0.50912,0.37645,193.53
> view matrix models
> #20,-0.52326,0.57766,0.6265,136.61,-0.58736,-0.77714,0.22598,252.68,0.61742,-0.24973,0.74594,194.14
> view matrix models
> #20,-0.6068,0.33149,0.72243,136.51,0.093265,-0.87292,0.47887,255.55,0.78936,0.35796,0.49877,194.23
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #20,-0.6068,0.33149,0.72243,136.93,0.093265,-0.87292,0.47887,264,0.78936,0.35796,0.49877,195.99
> view matrix models
> #20,-0.6068,0.33149,0.72243,137.15,0.093265,-0.87292,0.47887,264.9,0.78936,0.35796,0.49877,195.67
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #20,-0.6013,0.33589,0.72499,137.17,0.093452,-0.87156,0.48131,264.9,0.79354,0.35716,0.49268,195.67
> view matrix models
> #20,-0.34931,-0.22235,0.91024,138.3,-0.15298,-0.94487,-0.28952,261.95,0.92444,-0.24038,0.29604,195.33
> ui mousemode right "translate selected models"
> view matrix models
> #20,-0.34931,-0.22235,0.91024,139.12,-0.15298,-0.94487,-0.28952,257.32,0.92444,-0.24038,0.29604,211.9
> view matrix models
> #20,-0.34931,-0.22235,0.91024,144.57,-0.15298,-0.94487,-0.28952,271.87,0.92444,-0.24038,0.29604,207.94
> ui mousemode right "rotate selected models"
> view matrix models
> #20,-0.14651,0.026939,0.98884,145.53,-0.69754,-0.71161,-0.083961,270.76,0.70141,-0.70206,0.12305,206.57
> ui mousemode right "translate selected models"
> view matrix models
> #20,-0.14651,0.026939,0.98884,145.15,-0.69754,-0.71161,-0.083961,262.61,0.70141,-0.70206,0.12305,207.58
> view matrix models
> #20,-0.14651,0.026939,0.98884,142.49,-0.69754,-0.71161,-0.083961,261.7,0.70141,-0.70206,0.12305,213.84
> ui mousemode right "rotate selected models"
> view matrix models
> #20,0.25038,1.2052e-05,0.96815,143.71,-0.95763,-0.147,0.24766,261.97,0.14232,-0.98914,-0.036794,211.49
> ui mousemode right "translate selected models"
> view matrix models
> #20,0.25038,1.2052e-05,0.96815,144.15,-0.95763,-0.147,0.24766,250.98,0.14232,-0.98914,-0.036794,219.25
> view matrix models
> #20,0.25038,1.2052e-05,0.96815,145.15,-0.95763,-0.147,0.24766,250.57,0.14232,-0.98914,-0.036794,216.61
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #20,0.25038,1.2052e-05,0.96815,145.13,-0.95763,-0.147,0.24766,249.93,0.14232,-0.98914,-0.036794,216.4
> ui mousemode right zoom
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/SMARCC2_2_953_1214.pdb"
Chain information for SMARCC2_2_953_1214.pdb #21
---
Chain | Description
A | No description available
> ui mousemode right select
Drag select of 6 residues
> ui mousemode right "translate selected models"
> view matrix models #21,1,0,0,12.395,0,1,0,269.06,0,0,1,244.74
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #21,1,0,0,101.74,0,1,0,231.05,0,0,1,362.25
> view matrix models #21,1,0,0,120.81,0,1,0,175.51,0,0,1,283.21
> view matrix models #21,1,0,0,137.94,0,1,0,175.57,0,0,1,279.68
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.3558,0.8822,-0.30844,146.97,0.83544,-0.15232,0.52806,161.66,0.41887,-0.44557,-0.79121,308.23
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.3558,0.8822,-0.30844,162.31,0.83544,-0.15232,0.52806,157.82,0.41887,-0.44557,-0.79121,307.1
> view matrix models
> #21,0.3558,0.8822,-0.30844,163.59,0.83544,-0.15232,0.52806,157.1,0.41887,-0.44557,-0.79121,305.95
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.3558,0.8822,-0.30844,164.23,0.83544,-0.15232,0.52806,158.11,0.41887,-0.44557,-0.79121,305.65
> ui mousemode right zoom
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.69722,0.6302,-0.34166,161.84,0.58443,-0.22371,0.78,157.15,0.41513,-0.74351,-0.52428,302.48
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.69722,0.6302,-0.34166,158.52,0.58443,-0.22371,0.78,173.51,0.41513,-0.74351,-0.52428,318.48
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.66798,-0.43567,0.60333,147.57,-0.39115,0.48416,0.78268,182.04,-0.6331,-0.7588,0.153,319.64
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.66798,-0.43567,0.60333,148.91,-0.39115,0.48416,0.78268,209.82,-0.6331,-0.7588,0.153,334.82
> view matrix models
> #21,0.66798,-0.43567,0.60333,149.62,-0.39115,0.48416,0.78268,218.12,-0.6331,-0.7588,0.153,351.57
> view matrix models
> #21,0.66798,-0.43567,0.60333,156.91,-0.39115,0.48416,0.78268,179.55,-0.6331,-0.7588,0.153,304.84
> view matrix models
> #21,0.66798,-0.43567,0.60333,177.46,-0.39115,0.48416,0.78268,222.71,-0.6331,-0.7588,0.153,348.21
> view matrix models
> #21,0.66798,-0.43567,0.60333,185.94,-0.39115,0.48416,0.78268,191.07,-0.6331,-0.7588,0.153,329.75
> view matrix models
> #21,0.66798,-0.43567,0.60333,197.63,-0.39115,0.48416,0.78268,193.46,-0.6331,-0.7588,0.153,370.01
> view matrix models
> #21,0.66798,-0.43567,0.60333,199.73,-0.39115,0.48416,0.78268,176.93,-0.6331,-0.7588,0.153,362.98
> view matrix models
> #21,0.66798,-0.43567,0.60333,208.69,-0.39115,0.48416,0.78268,184.87,-0.6331,-0.7588,0.153,366.57
> view matrix models
> #21,0.66798,-0.43567,0.60333,207.59,-0.39115,0.48416,0.78268,175.92,-0.6331,-0.7588,0.153,365.61
> view matrix models
> #21,0.66798,-0.43567,0.60333,210.28,-0.39115,0.48416,0.78268,181.02,-0.6331,-0.7588,0.153,364.95
> view matrix models
> #21,0.66798,-0.43567,0.60333,210.96,-0.39115,0.48416,0.78268,181.1,-0.6331,-0.7588,0.153,364.2
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.66798,-0.43567,0.60333,211.03,-0.39115,0.48416,0.78268,181.11,-0.6331,-0.7588,0.153,364.31
> ui mousemode right zoom
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/fantist/Desktop/movie4.mp4
Movie saved to /Users/fantist/Desktop/movie4.mp4
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/Used for
> assembly/BAF complex adding tentacle.cxs"
——— End of log from Mon Feb 13 10:10:42 2023 ———
opened ChimeraX session
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> hide #!2 models
> hide #4 models
> hide #5 models
> hide #6 models
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> hide #14 models
> hide #15 models
> hide #16 models
> hide #17 models
> hide #20 models
> hide #21 models
> open "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/SS18_SSX1.pdb"
Chain information for SS18_SSX1.pdb #22
---
Chain | Description
A | No description available
> ui mousemode right zoom
> ui mousemode right select
> select clear
> select #22/A:45
6 atoms, 5 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #22,1,0,0,109.27,0,1,0,110.75,0,0,1,72.157
> view matrix models #22,1,0,0,159.37,0,1,0,181.06,0,0,1,82.771
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #22,1,0,0,167.87,0,1,0,250.62,0,0,1,65.242
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.9859,-0.15326,0.067234,167.99,0.066344,0.72672,0.68372,253.03,-0.15365,-0.66962,0.72664,63.535
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.9141,-0.28568,-0.28776,166.44,-0.0073018,-0.72115,0.69274,250.77,-0.40543,-0.63113,-0.66129,58.331
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.92181,-0.37377,-0.10281,167.12,0.10951,-0.0033256,0.99398,252.91,-0.37186,-0.92752,0.037864,60.959
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.9256,-0.35825,-0.12214,167.03,0.099788,-0.080309,0.99176,252.81,-0.36511,-0.93016,-0.038585,60.548
> view matrix models
> #22,-0.078954,0.93615,-0.34261,174.05,0.029981,0.34576,0.93784,253.74,0.99643,0.063774,-0.055365,54.661
> view matrix models
> #22,0.017666,0.97834,-0.20623,174.24,-0.50444,0.18681,0.84299,256,0.86326,0.089142,0.49682,58.121
> view matrix models
> #22,-0.25404,-0.10902,-0.96103,170.1,-0.93418,0.28506,0.2146,255.57,0.25055,0.95229,-0.17426,59.951
> view matrix models
> #22,-0.22936,-0.17154,-0.95811,169.85,-0.8903,0.43483,0.13527,255.22,0.39341,0.88403,-0.25245,58.642
> view matrix models
> #22,-0.095991,-0.11404,-0.98883,169.06,-0.9406,0.3354,0.052629,254.92,0.32565,0.93515,-0.13946,59.664
> view matrix models
> #22,0.12145,-0.66535,-0.73659,168.02,-0.99259,-0.079017,-0.09229,253.74,0.003202,0.74234,-0.67002,58.56
> ui mousemode right "translate selected models"
> view matrix models
> #22,0.12145,-0.66535,-0.73659,117.81,-0.99259,-0.079017,-0.09229,246.1,0.003202,0.74234,-0.67002,111.54
> view matrix models
> #22,0.12145,-0.66535,-0.73659,143.86,-0.99259,-0.079017,-0.09229,278.11,0.003202,0.74234,-0.67002,142.98
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #22,0.12145,-0.66535,-0.73659,140.76,-0.99259,-0.079017,-0.09229,282.23,0.003202,0.74234,-0.67002,140.41
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.041578,-0.75908,-0.64966,141.92,-0.99636,0.079897,-0.029587,282.85,0.074365,0.64607,-0.75965,139.4
> view matrix models
> #22,-0.06956,-0.72914,-0.68082,141.98,-0.99758,0.050478,0.047862,283.18,-0.00053092,0.6825,-0.73088,140.03
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.06956,-0.72914,-0.68082,142.38,-0.99758,0.050478,0.047862,285.19,-0.00053092,0.6825,-0.73088,145.14
> view matrix models
> #22,-0.06956,-0.72914,-0.68082,141.61,-0.99758,0.050478,0.047862,286.28,-0.00053092,0.6825,-0.73088,144.6
> view matrix models
> #22,-0.06956,-0.72914,-0.68082,145.56,-0.99758,0.050478,0.047862,275.31,-0.00053092,0.6825,-0.73088,138.68
> undo
> view matrix models
> #22,-0.06956,-0.72914,-0.68082,156.68,-0.99758,0.050478,0.047862,281.43,-0.00053092,0.6825,-0.73088,145.81
> undo
> ui mousemode right zoom
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF complex adding tentacle.cxs"
——— End of log from Tue Feb 14 21:20:40 2023 ———
opened ChimeraX session
> show #4 models
> show #5 models
> show #6 models
> show #7 models
> show #8 models
> show #9 models
> show #10 models
> show #11 models
> show #12 models
> show #13 models
> show #14 models
> show #15 models
> show #16 models
> show #17 models
> show #20 models
> show #21 models
> hide #22 models
> select #3/X:18-136
2424 atoms, 2715 bonds, 119 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> undo
> select #3/I:350-1366
4606 atoms, 4682 bonds, 11 pseudobonds, 551 residues, 2 models selected
> color (#!3 & sel) #c2583aff
> color (#!3 & sel) #c25738ff
[Repeated 1 time(s)]
> color (#!3 & sel) #c15637ff
> color (#!3 & sel) #bb5436ff
> color (#!3 & sel) #b95335ff
> color (#!3 & sel) #b75235ff
[Repeated 1 time(s)]
> color (#!3 & sel) #b25033ff
> color (#!3 & sel) #af4f32ff
> color (#!3 & sel) #bc5436ff
> color (#!3 & sel) #be5537ff
> color (#!3 & sel) #c75939ff
> color (#!3 & sel) #cd5c3bff
> color (#!3 & sel) #ce5c3bff
> color (#!3 & sel) #d7603eff
> color (#!3 & sel) #d8613eff
> color (#!3 & sel) #e26541ff
[Repeated 1 time(s)]
> color (#!3 & sel) #e36641ff
> color (#!3 & sel) #dc633fff
> color (#!3 & sel) #db623fff
> color (#!3 & sel) #d8613eff
> color (#!3 & sel) #d25e3dff
> color (#!3 & sel) #d25e3cff
> color (#!3 & sel) #cf5d3cff
> color (#!3 & sel) #cb5b3bff
> color (#!3 & sel) #c95a3aff
> color (#!3 & sel) #c85a3aff
[Repeated 1 time(s)]
> color (#!3 & sel) #c75939ff
> color (#!3 & sel) #c45839ff
> color (#!3 & sel) #c45838ff
> color (#!3 & sel) #c45838fd
> color (#!3 & sel) #c45838a5
> color (#!3 & sel) #c458389a
> color (#!3 & sel) #c4583898
> color (#!3 & sel) #c45838a5
[Repeated 1 time(s)]
> color (#!3 & sel) #c45838aa
> color (#!3 & sel) #c45838b6
> color (#!3 & sel) #c45838b9
> color (#!3 & sel) #c45838bd
> color (#!3 & sel) #c45838dc
> color (#!3 & sel) #c45838de
> color (#!3 & sel) #c45838d0
> color (#!3 & sel) #c45838c8
> color (#!3 & sel) #c45838a2
> color (#!3 & sel) #c458388a
> color (#!3 & sel) #c4583880
> color (#!3 & sel) #c4583875
> color (#!3 & sel) #c4583853
> color (#!3 & sel) #c4583850
> color (#!3 & sel) #c4583870
> color (#!3 & sel) #c458387b
> color (#!3 & sel) #c4583883
> color (#!3 & sel) #c45838a3
> color (#!3 & sel) #c45838b4
> color (#!3 & sel) #c45838b7
> color (#!3 & sel) #c45838c1
> color (#!3 & sel) #c45838c9
> color (#!3 & sel) #c45838cd
> color (#!3 & sel) #c45838ce
> color (#!3 & sel) #c45838b7
> color (#!3 & sel) #c45838b5
> color (#!3 & sel) #c45838a2
[Repeated 1 time(s)]
> color (#!3 & sel) #c45838ac
> color (#!3 & sel) #c45838b1
> color (#!3 & sel) #c5593bff
> ui mousemode right select
> select clear
> select add #5
693 atoms, 707 bonds, 90 residues, 1 model selected
> select add #6
3142 atoms, 3267 bonds, 440 residues, 2 models selected
> select add #7
5009 atoms, 5159 bonds, 677 residues, 3 models selected
> color sel #95b6f2ff
> undo
> color sel #c75a3cff
> select clear
> select #3/L:1639-2285
3670 atoms, 3739 bonds, 4 pseudobonds, 466 residues, 2 models selected
> color (#!3 & sel) #e8dfc6ff
> select add #2
9230 atoms, 9466 bonds, 4 pseudobonds, 1204 residues, 4 models selected
> select add #4
15607 atoms, 16055 bonds, 4 pseudobonds, 2104 residues, 6 models selected
> color (#4#!3 & sel) #e8dfc6ff
[Repeated 1 time(s)]
> select clear
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select subtract #2
1 model selected
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select add #4
11937 atoms, 12316 bonds, 1638 residues, 3 models selected
> select subtract #4
5560 atoms, 5727 bonds, 738 residues, 2 models selected
> show #!2 models
> select clear
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF with IDRs.cxs"
——— End of log from Sun Feb 26 15:57:38 2023 ———
opened ChimeraX session
> hide #!2 models
> show #!2 models
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> color (#!2 & sel) #e8dfc6ff
> ui mousemode right select
> select clear
> hide #4 models
> show #4 models
> color #8 #ffd479ff
> select add #9
1039 atoms, 1046 bonds, 135 residues, 1 model selected
> select add #8
2410 atoms, 2459 bonds, 306 residues, 2 models selected
> color sel #fffc79ff
> color sel #ffd479ff
[Repeated 2 time(s)]
> select #3/Q:172-276
860 atoms, 871 bonds, 105 residues, 1 model selected
> color (#!3 & sel) #ffd479ff
> select clear
> select add #10
856 atoms, 880 bonds, 124 residues, 1 model selected
> select add #11
1773 atoms, 1814 bonds, 237 residues, 2 models selected
> color sel byhetero
> select clear
> select add #10
856 atoms, 880 bonds, 124 residues, 1 model selected
> select add #11
1773 atoms, 1814 bonds, 237 residues, 2 models selected
> color sel #d783ffff
> select #3/P:125-505
2015 atoms, 2055 bonds, 2 pseudobonds, 239 residues, 2 models selected
> color (#!3 & sel) #d783ffff
> select clear
> select add #12
3394 atoms, 3470 bonds, 422 residues, 1 model selected
> select add #13
4054 atoms, 4149 bonds, 508 residues, 2 models selected
> select add #14
5226 atoms, 5331 bonds, 662 residues, 3 models selected
> select add #15
7009 atoms, 7202 bonds, 924 residues, 4 models selected
> ui tool show "Color Actions"
> color sel #4f8f00ff
[Repeated 1 time(s)]
> select #3/N:423-952
2120 atoms, 2158 bonds, 3 pseudobonds, 261 residues, 2 models selected
> color (#!3 & sel) #4f8f00ff
> select clear
> select add #16
3394 atoms, 3470 bonds, 422 residues, 1 model selected
> select add #17
4054 atoms, 4149 bonds, 508 residues, 2 models selected
> select add #20
5170 atoms, 5273 bonds, 657 residues, 3 models selected
> select add #21
6953 atoms, 7144 bonds, 919 residues, 4 models selected
> hide #!18 models
> color sel #009193ff
> color sel #009051ff
[Repeated 1 time(s)]
> select clear
> select #3/O:423-952
2632 atoms, 2692 bonds, 3 pseudobonds, 325 residues, 2 models selected
> color (#!3 & sel) #009051ff
> select clear
> select add #19
2453 atoms, 2548 bonds, 317 residues, 1 model selected
> select add #18
3369 atoms, 3437 bonds, 1 pseudobond, 470 residues, 3 models selected
> show #!18 models
> color (#19#!18 & sel) red
> select clear
> show #22 models
> hide #22 models
> hide #19 models
> show #22 models
> select add #22
3764 atoms, 3887 bonds, 488 residues, 1 model selected
> color sel blue
> select clear
> select #3/M:7-381
2277 atoms, 2317 bonds, 4 pseudobonds, 283 residues, 2 models selected
> color (#!3 & sel) #00fdffff
> select clear
> select #3/J:12-417
2612 atoms, 2667 bonds, 4 pseudobonds, 334 residues, 2 models selected
> color (#!3 & sel) #945200ff
> select #3/J:12-417
2612 atoms, 2667 bonds, 4 pseudobonds, 334 residues, 2 models selected
> select #3/K:2-372
2482 atoms, 2535 bonds, 3 pseudobonds, 317 residues, 2 models selected
> color (#!3 & sel) #941100ff
> color (#!3 & sel) #929000ff
> select clear
> select #3/J:12-417
2612 atoms, 2667 bonds, 4 pseudobonds, 334 residues, 2 models selected
> color (#!3 & sel) #d4fb79ff
> select clear
> hide #22 models
> show #19 models
> hide #!18 models
> select add #3
32253 atoms, 33345 bonds, 321 pseudobonds, 3634 residues, 4 models selected
> select subtract #3
17 models selected
> select add #4
6377 atoms, 6589 bonds, 900 residues, 1 model selected
> select subtract #4
Nothing selected
> select add #3
32253 atoms, 33345 bonds, 321 pseudobonds, 3634 residues, 4 models selected
> color (#!3 & sel) dark gray
> select clear
> undo
[Repeated 1 time(s)]
> select clear
> undo
[Repeated 2 time(s)]
> select clear
> select add #3
32253 atoms, 33345 bonds, 321 pseudobonds, 3634 residues, 4 models selected
> color (#!3 & sel) light gray
> select clear
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select add #4
11937 atoms, 12316 bonds, 1638 residues, 3 models selected
> color (#4#!2 & sel) #00fdffff
> color (#4#!2 & sel) #7a81ffff
> select #3/L:1639-2285
3670 atoms, 3739 bonds, 4 pseudobonds, 466 residues, 2 models selected
> undo
[Repeated 7 time(s)]
> select clear
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select add #4
11937 atoms, 12316 bonds, 1638 residues, 3 models selected
> color (#4#!2 & sel) #7a81ffff
> select #3/L:1639-2285
3670 atoms, 3739 bonds, 4 pseudobonds, 466 residues, 2 models selected
> color (#!3 & sel) #7a81ffff
> select clear
Drag select of 49 residues
> select clear
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF with IDRs.cxs"
——— End of log from Sun Feb 26 19:26:14 2023 ———
opened ChimeraX session
Alignment identifier is 2/A
Traceback (most recent call last):
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/toolbar/tool.py", line 205, in callback
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 386, in run_provider
return api._api_caller.run_provider(api, session, name, mgr, **kw)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/__init__.py", line 1289, in run_provider
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/__init__.py", line 52, in run_provider
shortcuts.run_provider(session, name)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 1335, in run_provider
keyboard_shortcuts(session).try_shortcut(name)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 390, in try_shortcut
self.run_shortcut(keys)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 408, in run_shortcut
sc.run(self.session, status = self._enabled)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 310, in run
f(shortcut_atoms(s))
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 1047, in show_sequence
run(session, 'sequence chain %s' % seq_chain_spec, log = False)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 513, in run
run_command(session, command, **kw)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/cmd.py", line 212, in seqalign_chain
alignment = session.alignments.new_alignment([chain], ident, seq_viewer="sv",
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
See log for complete Python traceback.
> select add #5
693 atoms, 707 bonds, 90 residues, 1 model selected
Alignment identifier is 5/A
Traceback (most recent call last):
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/toolbar/tool.py", line 205, in callback
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 386, in run_provider
return api._api_caller.run_provider(api, session, name, mgr, **kw)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/__init__.py", line 1289, in run_provider
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/__init__.py", line 52, in run_provider
shortcuts.run_provider(session, name)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 1335, in run_provider
keyboard_shortcuts(session).try_shortcut(name)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 390, in try_shortcut
self.run_shortcut(keys)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 408, in run_shortcut
sc.run(self.session, status = self._enabled)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 310, in run
f(shortcut_atoms(s))
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 1047, in show_sequence
run(session, 'sequence chain %s' % seq_chain_spec, log = False)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 513, in run
run_command(session, command, **kw)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/cmd.py", line 212, in seqalign_chain
alignment = session.alignments.new_alignment([chain], ident, seq_viewer="sv",
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
See log for complete Python traceback.
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> color red #0:123
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> undo
> ui mousemode right select
> select #5/A:24
5 atoms, 4 bonds, 1 residue, 1 model selected
> label sel atoms attribute name
> undo
> select #5/A:23
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right pivot
> ui mousemode right select
> ui mousemode right label
> label delete residues
> label #5/A:23
[Repeated 1 time(s)]
> ui mousemode right "resize markers"
> undo
[Repeated 2 time(s)]
> ui mousemode right select
> select #5/A:23
9 atoms, 8 bonds, 1 residue, 1 model selected
> transparency sel 20
> undo
> select clear
> select #5/A:23
9 atoms, 8 bonds, 1 residue, 1 model selected
> show #3.3 models
> hide #3.3 models
Drag select of 111 residues
> select clear
> select add #3.4
739 atoms, 91 residues, 1 model selected
> select add #3.8
1478 atoms, 182 residues, 2 models selected
> select add #3.9
2092 atoms, 259 residues, 3 models selected
> select add #3.10
2819 atoms, 354 residues, 4 models selected
> select add #3.11
3519 atoms, 444 residues, 5 models selected
> select add #3.12
8125 atoms, 995 residues, 6 models selected
> select subtract #3.12
3519 atoms, 444 residues, 7 models selected
> select #3/E:46
7 atoms, 6 bonds, 1 residue, 1 model selected
Drag select of 9 residues
> select add #3.8
923 atoms, 100 residues, 3 models selected
> select subtract #3.8
184 atoms, 9 residues, 4 models selected
> hide #3.4 models
> hide #3.8 models
> hide #3.9 models
> hide #3.10 models
> hide #3.11 models
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> show #3.11 models
> show #3.10 models
> show #3.9 models
> show #3.8 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #3.8 models
> hide #3.9 models
> hide #3.10 models
> hide #3.11 models
> hide #3.12 models
> show #3.12 models
> show #3.11 models
> show #3.10 models
> show #3.9 models
> show #3.8 models
> show #3.4 models
> hide #3.14 models
> show #3.14 models
> hide #3.14 models
> show #3.14 models
> hide #3.13 models
> show #3.13 models
> hide #3.16 models
> show #3.16 models
> hide #3.16 models
> show #3.16 models
> select add #3.14
2666 atoms, 326 residues, 3 models selected
> hide (#!3 & sel) target a
> select clear
> hide #3.14 models
> show #3.14 models
> hide #3.14 target m
[Repeated 1 time(s)]
> show #3.14 target m
> view #3.14 clip false
No displayed objects specified.
> select add #3.13
2612 atoms, 334 residues, 1 model selected
> select add #3.14
5094 atoms, 651 residues, 2 models selected
> select add #3.15
8764 atoms, 1117 residues, 3 models selected
> select add #3.16
11041 atoms, 1400 residues, 4 models selected
> select add #3.17
13161 atoms, 1661 residues, 5 models selected
> select add #3.18
15793 atoms, 1986 residues, 6 models selected
> select add #3.19
17808 atoms, 2225 residues, 7 models selected
> select add #3.20
18668 atoms, 2330 residues, 8 models selected
> select add #3.21
19248 atoms, 2400 residues, 9 models selected
> select add #3.22
21672 atoms, 2519 residues, 10 models selected
> select add #3.23
24127 atoms, 2638 residues, 11 models selected
> select add #3.12
28733 atoms, 3189 residues, 12 models selected
> select subtract #3.12
24127 atoms, 2638 residues, 13 models selected
> select subtract #3.13
21515 atoms, 2304 residues, 12 models selected
> select add #3.13
24127 atoms, 2638 residues, 11 models selected
> select subtract #3.23
21672 atoms, 2519 residues, 12 models selected
> select add #3.23
24127 atoms, 2638 residues, 11 models selected
> select subtract #3.23
21672 atoms, 2519 residues, 12 models selected
> select subtract #3.22
19248 atoms, 2400 residues, 11 models selected
> select add #3.12
23854 atoms, 2951 residues, 10 models selected
> select add #3.11
24554 atoms, 3041 residues, 11 models selected
> select subtract #3.11
23854 atoms, 2951 residues, 12 models selected
> select add #3.10
24581 atoms, 3046 residues, 11 models selected
> select subtract #3.10
23854 atoms, 2951 residues, 12 models selected
> select add #3.9
24468 atoms, 3028 residues, 11 models selected
> select subtract #3.9
23854 atoms, 2951 residues, 12 models selected
> select add #3.8
24593 atoms, 3042 residues, 11 models selected
> select subtract #3.8
23854 atoms, 2951 residues, 12 models selected
> select add #3.4
24593 atoms, 3042 residues, 11 models selected
> select subtract #3.4
23854 atoms, 2951 residues, 12 models selected
> color (#!3 & sel) dark gray
> undo
> hide #!2 models
> hide #4 models
> hide #!5 models
> hide #6 models
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> hide #14 models
> hide #15 models
> hide #16 models
> hide #17 models
> hide #19 models
> hide #20 models
> hide #21 models
> color (#!3 & sel) light gray
> select clear
> undo
> color (#!3 & sel) white
> select clear
> undo
[Repeated 4 time(s)]
> select add #2
29414 atoms, 5727 bonds, 3689 residues, 12 models selected
> select subtract #2
23854 atoms, 2951 residues, 12 models selected
> select add #3
32253 atoms, 33345 bonds, 321 pseudobonds, 3634 residues, 14 models selected
> select subtract #3
17 models selected
> select add #3.12
4606 atoms, 551 residues, 1 model selected
> color #3.12 #c5593b21
> color #3.12 #c5593b1c
> color #3.12 #c5593b19
> color #3.12 #c5593bff
> color #3.12 #c5593b1a
> color #3.12 #c5593bff
[Repeated 1 time(s)]
> color #3.12 #ff966dff
> color #3.12 #b2694cff
> color #3.12 #b2694c1a
> color #3.12 #f7f1efff
> select clear
> select add #3.12
4606 atoms, 551 residues, 1 model selected
> color (#!3 & sel) #ffffffff
> select clear
[Repeated 1 time(s)]
> undo
[Repeated 5 time(s)]
> select add #3.12
4606 atoms, 551 residues, 1 model selected
> color #3.12 #c75a3cff
> color (#!3 & sel) #c75a3c33
> color (#!3 & sel) #f1dcd6ff
> select clear
> undo
[Repeated 2 time(s)]
> select clear
> undo
[Repeated 2 time(s)]
> color (#!3 & sel) #c75a3cff
> color (#!3 & sel) #c75a3c80
> color (#!3 & sel) #e2ab9cff
> select clear
> select add #5
693 atoms, 707 bonds, 90 residues, 2 models selected
> select add #6
3142 atoms, 3267 bonds, 440 residues, 3 models selected
> select add #7
5009 atoms, 5159 bonds, 677 residues, 4 models selected
> show #!5 models
> show #6 models
> show #7 models
> color (#6-7#!5 & sel) #e2ab9cff
> select clear
Mismatch between Cocoa '\x0' and Carbon 's' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon 'S' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon 's' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon 's' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00df' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00cd' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00df' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00cd' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> save "/Users/fantist/Desktop/清华园林思悠悠/Pi-Long Li's Lab/PDB structure/BAF+NCP
> assembly/BAF with IDRs mapping mutations.cxs"
——— End of log from Wed Apr 5 09:45:10 2023 ———
opened ChimeraX session
> show #8 models
> hide #8 models
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> select add #3
37813 atoms, 39072 bonds, 321 pseudobonds, 4372 residues, 6 models selected
> select add #4
44190 atoms, 45661 bonds, 321 pseudobonds, 5272 residues, 24 models selected
> select subtract #3
11937 atoms, 12316 bonds, 1638 residues, 20 models selected
> select subtract #2
6377 atoms, 6589 bonds, 900 residues, 2 models selected
> select subtract #4
Nothing selected
> select add #2
5560 atoms, 5727 bonds, 738 residues, 1 model selected
> view #4 clip false
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
Traceback (most recent call last):
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/show_sequences/tool.py", line 64, in show_seqs
run(self.session, "seq chain %s" % " ".join([chain.atomspec for chain in
chains]))
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/cmd.py", line 212, in seqalign_chain
alignment = session.alignments.new_alignment([chain], ident, seq_viewer="sv",
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
See log for complete Python traceback.
> toolshed show
> ui tool show "Show Sequence Viewer"
> sequence chain #3/Q
Alignment identifier is 3/Q
Traceback (most recent call last):
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/show_sequences/tool.py", line 64, in show_seqs
run(self.session, "seq chain %s" % " ".join([chain.atomspec for chain in
chains]))
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/cmd.py", line 212, in seqalign_chain
alignment = session.alignments.new_alignment([chain], ident, seq_viewer="sv",
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
TypeError: __init__() got an unexpected keyword argument 'seq_viewer'
File
"/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seqalign/manager.py", line 242, in new_alignment
alignment = Alignment(self.session, seqs, identify_as, attrs, markups,
auto_destroy,
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Model Number: MGN93CH/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 8422.121.1
OS Loader Version: 8422.121.1
Software:
System Software Overview:
System Version: macOS 13.4 (22F66)
Kernel Version: Darwin 22.5.0
Time since boot: 16小时38分钟
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 7
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.11.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.0.1
ChimeraX-AddCharge: 1.5.8
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.7
ChimeraX-AtomicLibrary: 10.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202302080100
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3.3
ChimeraX-DockPrep: 1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.11
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.11
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.8
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.6.13
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.27
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.2
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.6
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.0.0
ipykernel: 6.21.1
ipython: 8.9.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.4
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.2.0
jupyterlab-widgets: 3.0.5
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
pandas: 1.5.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.0.0
prompt-toolkit: 3.0.36
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.2
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.2
python-dateutil: 2.8.2
pytz: 2022.7.1
pyzmq: 25.0.0
qtconsole: 5.4.0
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.3.2.post1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.0.2
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.9.0
typing-extensions: 4.4.0
urllib3: 1.26.14
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.5
zipp: 3.12.1
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Sequence |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Show chain sequence: TypeError: __init__() got an unexpected keyword argument 'seq_viewer' |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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Hi Jack,
--Eric