![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9114 closed defect (can't reproduce)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.2.1-arm64-arm-64bit
ChimeraX Version: 1.6.dev202303282212 (2023-03-28 22:12:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f773c140 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-06-01 17:23:32.00 +0200","app_version":"1.6.0","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"1.6.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.2.1 (22D68)","roots_installed":0,"name":"ChimeraX","incident_id":"015405B5-5F20-45C0-A7D7-D7E14B35A8FA"}
{
"uptime" : 27000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"coalitionID" : 2569,
"osVersion" : {
"train" : "macOS 13.2.1",
"build" : "22D68",
"releaseType" : "User"
},
"captureTime" : "2023-06-01 17:23:28.9707 +0200",
"incident" : "015405B5-5F20-45C0-A7D7-D7E14B35A8FA",
"pid" : 9511,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-06-01 13:17:32.2297 +0200",
"procStartAbsTime" : 310625212656,
"procExitAbsTime" : 664786987849,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"9273870C-30DB-5EED-A912-2D90B281157B","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "8860AA8B-6057-CF38-87BA-6AF1B2794A88",
"throttleTimeout" : 2147483647,
"sleepWakeUUID" : "B9FDD439-962A-4BE0-B0FA-59EF02194557",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"triggered":true,"id":145807,"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":6914168397},{"value":5100796952},{"value":151465679694695417},{"value":0},{"value":6124054856},{"value":3382570159920949282},{"value":3382570155436370274},{"value":78},{"value":0},{"value":49},{"value":4343509664},{"value":5705329072},{"value":0},{"value":328},{"value":8528721624},{"value":0},{"value":11},{"value":8446525760,"symbolLocation":0,"symbol":"_main_thread"},{"value":259},{"value":8446525984,"symbolLocation":224,"symbol":"_main_thread"},{"value":4447344992},{"value":1},{"value":32769},{"value":32768},{"value":8446532192,"symbolLocation":0,"symbol":"_NSConcreteStackBlock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6913989868},"cpsr":{"value":1073745920},"fp":{"value":5100796752},"sp":{"value":5100796720},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6913763432,"matchesCrashFrame":1},"far":{"value":4346260624}},"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":39016,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":0},{"imageOffset":27884,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":1},{"imageOffset":268748,"symbol":"raise","symbolLocation":32,"imageIndex":2},{"imageOffset":17060,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":3},{"imageOffset":3459388,"symbol":"QMacCGContext::QMacCGContext(QPainter*)","symbolLocation":40,"imageIndex":4},{"imageOffset":43052,"imageIndex":5},{"imageOffset":73708,"imageIndex":5},{"imageOffset":464432,"symbol":"QCommonStyle::drawControl(QStyle::ControlElement, QStyleOption const*, QPainter*, QWidget const*) const","symbolLocation":2132,"imageIndex":6},{"imageOffset":63388,"imageIndex":5},{"imageOffset":710016,"imageIndex":6},{"imageOffset":1933144,"symbol":"QTabBar::paintEvent(QPaintEvent*)","symbolLocation":1584,"imageIndex":6},{"imageOffset":344492,"symbol":"QWidget::event(QEvent*)","symbolLocation":132,"imageIndex":6},{"imageOffset":1931192,"symbol":"QTabBar::event(QEvent*)","symbolLocation":736,"imageIndex":6},{"imageOffset":42768,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":272,"imageIndex":6},{"imageOffset":49644,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":3396,"imageIndex":6},{"imageOffset":1427128,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":7},{"imageOffset":429724,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":8},{"imageOffset":291900,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3312,"imageIndex":6},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":6},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":6},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":6},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":6},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":6},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":6},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":6},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":6},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":6},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":6},{"imageOffset":413000,"symbol":"QWidgetRepaintManager::paintAndFlush()","symbolLocation":3904,"imageIndex":6},{"imageOffset":413644,"symbol":"QWidgetRepaintManager::sync()","symbolLocation":252,"imageIndex":6},{"imageOffset":345676,"symbol":"QWidget::event(QEvent*)","symbolLocation":1316,"imageIndex":6},{"imageOffset":1508896,"symbol":"QMainWindow::event(QEvent*)","symbolLocation":248,"imageIndex":6},{"imageOffset":684736,"symbol":"sipQMainWindow::event(QEvent*)","symbolLocation":224,"imageIndex":7},{"imageOffset":42768,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":272,"imageIndex":6},{"imageOffset":49644,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":3396,"imageIndex":6},{"imageOffset":1427128,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":7},{"imageOffset":429724,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":8},{"imageOffset":399932,"symbol":"QWidgetRepaintManager::sendUpdateRequest(QWidget*, QWidgetRepaintManager::UpdateTime)","symbolLocation":604,"imageIndex":6},{"imageOffset":399228,"symbol":"void QWidgetRepaintManager::markDirty(QRect const&, QWidget*, QWidgetRepaintManager::UpdateTime, QWidgetRepaintManager::BufferState)","symbolLocation":1748,"imageIndex":6},{"imageOffset":438296,"imageIndex":6},{"imageOffset":730904,"imageIndex":8},{"imageOffset":812196,"symbol":"QWindowPrivate::emitScreenChangedRecursion(QScreen*)","symbolLocation":80,"imageIndex":4},{"imageOffset":770088,"symbol":"QScreen::~QScreen()","symbolLocation":700,"imageIndex":4},{"imageOffset":770192,"symbol":"QScreen::~QScreen()","symbolLocation":12,"imageIndex":4},{"imageOffset":854364,"symbol":"QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*)","symbolLocation":36,"imageIndex":4},{"imageOffset":195752,"imageIndex":9},{"imageOffset":189688,"imageIndex":9},{"imageOffset":274400,"imageIndex":9},{"imageOffset":490932,"symbol":"QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const","symbolLocation":1072,"imageIndex":8},{"imageOffset":287828,"imageIndex":9},{"imageOffset":484684,"symbol":"__CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__","symbolLocation":128,"imageIndex":10},{"imageOffset":1130564,"symbol":"___CFXRegistrationPost_block_invoke","symbolLocation":88,"imageIndex":10},{"imageOffset":1130380,"symbol":"_CFXRegistrationPost","symbolLocation":440,"imageIndex":10},{"imageOffset":293732,"symbol":"_CFXNotificationPost","symbolLocation":708,"imageIndex":10},{"imageOffset":41868,"symbol":"-[NSNotificationCenter postNotificationName:object:userInfo:]","symbolLocation":88,"imageIndex":11},{"imageOffset":2107476,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":496,"imageIndex":12},{"imageOffset":512468,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":12},{"imageOffset":2106968,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":12},{"imageOffset":3422712,"symbol":"-[NSWindow _screenChanged:]","symbolLocation":136,"imageIndex":12},{"imageOffset":3422544,"symbol":"-[NSWindow _displayChangedSoAdjustWindows:]","symbolLocation":112,"imageIndex":12},{"imageOffset":11192196,"symbol":"___NSApplicationPerformScreenInvalidationReactions_block_invoke","symbolLocation":84,"imageIndex":12},{"imageOffset":216656,"symbol":"-[NSApplication enumerateWindowsWithOptions:usingBlock:]","symbolLocation":236,"imageIndex":12},{"imageOffset":11190924,"symbol":"___NSApplicationReactToScreenInvalidation_block_invoke","symbolLocation":848,"imageIndex":12},{"imageOffset":11189324,"symbol":"_NSApplicationReactToScreenInvalidation","symbolLocation":292,"imageIndex":12},{"imageOffset":1485884,"symbol":"-[NSApplication(ScreenHandling) _reactToDockChanged]","symbolLocation":156,"imageIndex":12},{"imageOffset":1484372,"symbol":"_NSCGSDockMessageReceive","symbolLocation":264,"imageIndex":12},{"imageOffset":365284,"symbol":"DockCallback(unsigned int, unsigned int, void*, void*)","symbolLocation":1528,"imageIndex":13},{"imageOffset":52956,"symbol":"dockClientNotificationProc","symbolLocation":232,"imageIndex":14},{"imageOffset":45588,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":896,"imageIndex":15},{"imageOffset":3372244,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":228,"imageIndex":15},{"imageOffset":3371984,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":28,"imageIndex":15},{"imageOffset":10716,"symbol":"_dispatch_call_block_and_release","symbolLocation":32,"imageIndex":16},{"imageOffset":17668,"symbol":"_dispatch_client_callout","symbolLocation":20,"imageIndex":16},{"imageOffset":77084,"symbol":"_dispatch_main_queue_drain","symbolLocation":928,"imageIndex":16},{"imageOffset":76140,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":44,"imageIndex":16},{"imageOffset":798016,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":16,"imageIndex":10},{"imageOffset":526272,"symbol":"__CFRunLoopRun","symbolLocation":2036,"imageIndex":10},{"imageOffset":522360,"symbol":"CFRunLoopRunSpecific","symbolLocation":612,"imageIndex":10},{"imageOffset":204704,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":13},{"imageOffset":204260,"symbol":"ReceiveNextEventCommon","symbolLocation":672,"imageIndex":13},{"imageOffset":203564,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":72,"imageIndex":13},{"imageOffset":235596,"symbol":"_DPSNextEvent","symbolLocation":632,"imageIndex":12},{"imageOffset":231900,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":728,"imageIndex":12},{"imageOffset":183820,"symbol":"-[NSApplication run]","symbolLocation":464,"imageIndex":12},{"imageOffset":86032,"imageIndex":9},{"imageOffset":467648,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":532,"imageIndex":8},{"imageOffset":431416,"symbol":"QCoreApplication::exec()","symbolLocation":128,"imageIndex":8},{"imageOffset":2498220,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":7},{"imageOffset":553436,"symbol":"cfunction_call","symbolLocation":172,"imageIndex":17},{"imageOffset":280688,"symbol":"_PyObject_MakeTpCall","symbolLocation":360,"imageIndex":17},{"imageOffset":1158088,"symbol":"call_function","symbolLocation":512,"imageIndex":17},{"imageOffset":1147400,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23108,"imageIndex":17},{"imageOffset":282620,"symbol":"function_code_fastcall","symbolLocation":112,"imageIndex":17},{"imageOffset":290656,"symbol":"method_vectorcall","symbolLocation":168,"imageIndex":17},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":17},{"imageOffset":1147400,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23108,"imageIndex":17},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":17},{"imageOffset":282496,"symbol":"_PyFunction_Vectorcall","symbolLocation":256,"imageIndex":17},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":17},{"imageOffset":1147524,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23232,"imageIndex":17},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":17},{"imageOffset":1124092,"symbol":"PyEval_EvalCode","symbolLocation":80,"imageIndex":17},{"imageOffset":1111204,"symbol":"builtin_exec","symbolLocation":672,"imageIndex":17},{"imageOffset":551308,"symbol":"cfunction_vectorcall_FASTCALL","symbolLocation":232,"imageIndex":17},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":17},{"imageOffset":1147524,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23232,"imageIndex":17},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":17},{"imageOffset":282496,"symbol":"_PyFunction_Vectorcall","symbolLocation":256,"imageIndex":17},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":17},{"imageOffset":1147524,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23232,"imageIndex":17},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":17},{"imageOffset":282496,"symbol":"_PyFunction_Vectorcall","symbolLocation":256,"imageIndex":17},{"imageOffset":1531556,"symbol":"pymain_run_module","symbolLocation":200,"imageIndex":17},{"imageOffset":1529064,"symbol":"Py_RunMain","symbolLocation":764,"imageIndex":17},{"imageOffset":1531220,"symbol":"pymain_main","symbolLocation":340,"imageIndex":17},{"imageOffset":1530868,"symbol":"Py_Main","symbolLocation":36,"imageIndex":17},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":18},{"imageOffset":24144,"symbol":"start","symbolLocation":2544,"imageIndex":19}]},{"id":145821,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145822,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145823,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145824,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145825,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145826,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145827,"frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":20},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145916,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":53036,"symbol":"kevent64","symbolLocation":8,"imageIndex":0},{"imageOffset":62151504,"imageIndex":21},{"imageOffset":62151152,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61835128,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145918,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":61883116,"imageIndex":21},{"imageOffset":61885944,"imageIndex":21},{"imageOffset":61884684,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145919,"name":"Chrome_IOThread","frames":[{"imageOffset":12000,"symbol":"__ulock_wake","symbolLocation":8,"imageIndex":0},{"imageOffset":8320,"symbol":"_os_unfair_lock_unlock_slow","symbolLocation":56,"imageIndex":3},{"imageOffset":32227956,"imageIndex":21},{"imageOffset":32360400,"imageIndex":21},{"imageOffset":32287752,"imageIndex":21},{"imageOffset":32306648,"imageIndex":21},{"imageOffset":32308388,"imageIndex":21},{"imageOffset":101197392,"imageIndex":21},{"imageOffset":101196960,"imageIndex":21},{"imageOffset":32296896,"imageIndex":21},{"imageOffset":32279684,"imageIndex":21},{"imageOffset":32238036,"imageIndex":21},{"imageOffset":70524800,"imageIndex":21},{"imageOffset":74433560,"imageIndex":21},{"imageOffset":74433688,"imageIndex":21},{"imageOffset":61688480,"imageIndex":21},{"imageOffset":61788980,"imageIndex":21},{"imageOffset":61788244,"imageIndex":21},{"imageOffset":62151224,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":25214976,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145920,"name":"NetworkConfigWatcher","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":62125656,"imageIndex":21},{"imageOffset":61342164,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145922,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":61883116,"imageIndex":21},{"imageOffset":61885944,"imageIndex":21},{"imageOffset":61884816,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145923,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":62125656,"imageIndex":21},{"imageOffset":61342164,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145924,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":53036,"symbol":"kevent64","symbolLocation":8,"imageIndex":0},{"imageOffset":62151504,"imageIndex":21},{"imageOffset":62151152,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":102133716,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145925,"name":"CompositorTileWorker1","frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":62096196,"imageIndex":21},{"imageOffset":92829352,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145926,"name":"ThreadPoolSingleThreadSharedForeground0","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":61883116,"imageIndex":21},{"imageOffset":61885944,"imageIndex":21},{"imageOffset":61884860,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145927,"name":"NetworkConfigWatcher","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":62125656,"imageIndex":21},{"imageOffset":61342164,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145928,"name":"VizCompositorThread","frames":[{"imageOffset":21718780,"imageIndex":21},{"imageOffset":21721128,"imageIndex":21},{"imageOffset":21721128,"imageIndex":21},{"imageOffset":21552596,"imageIndex":21},{"imageOffset":21706164,"imageIndex":21},{"imageOffset":21565996,"imageIndex":21},{"imageOffset":70536400,"imageIndex":21},{"imageOffset":70554000,"imageIndex":21},{"imageOffset":70541784,"imageIndex":21},{"imageOffset":70570892,"imageIndex":21},{"imageOffset":70569080,"imageIndex":21},{"imageOffset":70554000,"imageIndex":21},{"imageOffset":70523088,"imageIndex":21},{"imageOffset":70525600,"imageIndex":21},{"imageOffset":61688480,"imageIndex":21},{"imageOffset":61788980,"imageIndex":21},{"imageOffset":61788244,"imageIndex":21},{"imageOffset":61342100,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145929,"name":"NetworkService","frames":[{"imageOffset":53036,"symbol":"kevent64","symbolLocation":8,"imageIndex":0},{"imageOffset":62151504,"imageIndex":21},{"imageOffset":62151152,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145930,"name":"NetworkConfigWatcher","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":62125656,"imageIndex":21},{"imageOffset":61342164,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145931,"name":"ThreadPoolSingleThreadForegroundBlocking1","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":61883116,"imageIndex":21},{"imageOffset":61885944,"imageIndex":21},{"imageOffset":61884904,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":145960,"name":"NetworkConfigWatcher","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":62125656,"imageIndex":21},{"imageOffset":61342164,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":146012,"name":"com.apple.NSEventThread","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":39816,"symbol":"CGSSnarfAndDispatchDatagrams","symbolLocation":160,"imageIndex":15},{"imageOffset":3349148,"symbol":"SLSGetNextEventRecordInternal","symbolLocation":344,"imageIndex":15},{"imageOffset":1257392,"symbol":"SLEventCreateNextEvent","symbolLocation":16,"imageIndex":15},{"imageOffset":257108,"symbol":"PullEventsFromWindowServerOnConnection(unsigned int, unsigned char, __CFMachPortBoost*)","symbolLocation":312,"imageIndex":13},{"imageOffset":256736,"symbol":"MessageHandler(__CFMachPort*, void*, long, void*)","symbolLocation":60,"imageIndex":13},{"imageOffset":726032,"symbol":"__CFMachPortPerform","symbolLocation":260,"imageIndex":10},{"imageOffset":532376,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION__","symbolLocation":60,"imageIndex":10},{"imageOffset":532152,"symbol":"__CFRunLoopDoSource1","symbolLocation":520,"imageIndex":10},{"imageOffset":526500,"symbol":"__CFRunLoopRun","symbolLocation":2264,"imageIndex":10},{"imageOffset":522360,"symbol":"CFRunLoopRunSpecific","symbolLocation":612,"imageIndex":10},{"imageOffset":1458588,"symbol":"_NSEventThread","symbolLocation":172,"imageIndex":12},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":146038,"name":"MemoryInfra","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":62125656,"imageIndex":21},{"imageOffset":61342164,"imageIndex":21},{"imageOffset":61790700,"imageIndex":21},{"imageOffset":61535376,"imageIndex":21},{"imageOffset":61932820,"imageIndex":21},{"imageOffset":61933196,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":146039,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","frames":[{"imageOffset":4176,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":0},{"imageOffset":78108,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":0},{"imageOffset":39972,"symbol":"mach_msg_overwrite","symbolLocation":452,"imageIndex":0},{"imageOffset":5068,"symbol":"mach_msg","symbolLocation":24,"imageIndex":0},{"imageOffset":62126188,"imageIndex":21},{"imageOffset":61883116,"imageIndex":21},{"imageOffset":61885188,"imageIndex":21},{"imageOffset":61884728,"imageIndex":21},{"imageOffset":62101416,"imageIndex":21},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":249843,"name":"QFileInfoGatherer","frames":[{"imageOffset":18508,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":0},{"imageOffset":30264,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":1},{"imageOffset":1943672,"imageIndex":8},{"imageOffset":1943500,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":8},{"imageOffset":4145916,"symbol":"QFileInfoGatherer::run()","symbolLocation":120,"imageIndex":4},{"imageOffset":1903312,"imageIndex":8},{"imageOffset":28780,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":1},{"imageOffset":7724,"symbol":"thread_start","symbolLocation":8,"imageIndex":1}]},{"id":346662,"frames":[{"imageOffset":7704,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":346663,"frames":[{"imageOffset":7704,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":346819,"queue":"glmtl.ioSurfaceNotifierQueue","frames":[{"imageOffset":61204,"symbol":"IOSurfaceNotifierNotifyFunc","symbolLocation":0,"imageIndex":22},{"imageOffset":22424,"symbol":"IODispatchCalloutFromCFMessage","symbolLocation":352,"imageIndex":23},{"imageOffset":22056,"symbol":"_IODispatchCalloutWithDispatch","symbolLocation":44,"imageIndex":23},{"imageOffset":141924,"symbol":"dispatch_mig_server","symbolLocation":424,"imageIndex":16},{"imageOffset":17668,"symbol":"_dispatch_client_callout","symbolLocation":20,"imageIndex":16},{"imageOffset":31124,"symbol":"_dispatch_continuation_pop","symbolLocation":504,"imageIndex":16},{"imageOffset":110496,"symbol":"_dispatch_source_invoke","symbolLocation":1588,"imageIndex":16},{"imageOffset":47764,"symbol":"_dispatch_lane_serial_drain","symbolLocation":376,"imageIndex":16},{"imageOffset":50952,"symbol":"_dispatch_lane_invoke","symbolLocation":384,"imageIndex":16},{"imageOffset":95052,"symbol":"_dispatch_workloop_worker_thread","symbolLocation":652,"imageIndex":16},{"imageOffset":12544,"symbol":"_pthread_wqthread","symbolLocation":288,"imageIndex":1},{"imageOffset":7712,"symbol":"start_wqthread","symbolLocation":8,"imageIndex":1}]},{"id":348995,"frames":[{"imageOffset":7704,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":349327,"frames":[{"imageOffset":7704,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":357132,"frames":[{"imageOffset":7704,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64e",
"base" : 6913724416,
"size" : 237548,
"uuid" : "3dcd49b9-b3c5-3d90-be40-a3b807cb9cd7",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6913961984,
"size" : 53244,
"uuid" : "9f3b729a-ed04-3e65-adac-d75ad06ebbdc",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6912675840,
"size" : 528380,
"uuid" : "14cd841b-0c7b-34a2-a342-cc6796ef9259",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6914162688,
"size" : 32764,
"uuid" : "4cf75103-429d-3aae-ba13-2c1f67e47dbb",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4717035520,
"size" : 6373376,
"uuid" : "e580e17d-2c19-39bf-bdd1-9f96d62b6172",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4794695680,
"size" : 147456,
"uuid" : "24eae0c3-412b-3e2e-a94a-e55cf2c2eb3a",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4736057344,
"size" : 4538368,
"uuid" : "8969d043-f519-3f5e-8c7b-d70f69867f8b",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4729634816,
"size" : 3080192,
"uuid" : "7665a44d-b6d3-323b-bb24-6ce940fbfbeb",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4449894400,
"size" : 4653056,
"uuid" : "8411e169-c5ca-3d70-9962-1ecf4565ae8d",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4761452544,
"size" : 622592,
"uuid" : "9bbd9cd5-9744-3792-98aa-5f539f0bbb36",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6914375680,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5079040,
"uuid" : "18260df4-69a8-30d3-8175-fb8ae7ae7709",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "1953.300"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6930288640,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 10723328,
"uuid" : "c62e0110-c636-396a-9cb6-c3c08392b3fa",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "1953.300"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6967640064,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 15777792,
"uuid" : "88722053-0df0-3d4f-bf55-7e3c2d2c8e29",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2299.40.118"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7072899072,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3358720,
"uuid" : "c68fe2e2-e0f3-3caf-ada3-bcc72fba79d0",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7006633984,
"CFBundleShortVersionString" : "1.22",
"CFBundleIdentifier" : "com.apple.HIServices",
"size" : 409600,
"uuid" : "2bb62b67-c2cc-3584-841f-531216249cb3",
"path" : "\/System\/Library\/Frameworks\/ApplicationServices.framework\/Versions\/A\/Frameworks\/HIServices.framework\/Versions\/A\/HIServices",
"name" : "HIServices"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6994747392,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 4292608,
"uuid" : "4f4ac9ca-134a-3290-bd36-22bd7bd03f7f",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6912368640,
"size" : 294912,
"uuid" : "4d52c3a5-32e6-37a2-9d6c-23c612038354",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4350951424,
"CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 2555904,
"uuid" : "5ee765c2-b52f-3980-9781-73db1abd2bde",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
"name" : "Python",
"CFBundleVersion" : "3.9.11"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4342792192,
"CFBundleShortVersionString" : "1.6.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "a5992708-d5b4-36ec-ac0a-e525f6105b56",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.6.0.0"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6910648320,
"size" : 568228,
"uuid" : "191e84f1-4b95-39c8-b253-1c1ef56c0fa8",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4458987520,
"size" : 20709376,
"uuid" : "6b8373ed-7142-34ea-9b4b-9f502e8a6f33",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6129827840,
"size" : 154959872,
"uuid" : "1b766dc4-2490-3425-8726-45387675bc14",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7067893760,
"CFBundleShortVersionString" : "334.0.1",
"CFBundleIdentifier" : "com.apple.IOSurface",
"size" : 90112,
"uuid" : "b027be5d-20a9-3c38-9e24-63dbe4b55296",
"path" : "\/System\/Library\/Frameworks\/IOSurface.framework\/Versions\/A\/IOSurface",
"name" : "IOSurface",
"CFBundleVersion" : "334.0.1"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6966341632,
"CFBundleShortVersionString" : "2.0.2",
"CFBundleIdentifier" : "com.apple.framework.IOKit",
"size" : 901120,
"uuid" : "a5367643-e422-3594-8c2c-d0f2bb5cbf96",
"path" : "\/System\/Library\/Frameworks\/IOKit.framework\/Versions\/A\/IOKit",
"name" : "IOKit"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 9088K 8 \nCG image 2176K 37 \nColorSync 592K 29 \nCoreAnimation 2576K 68 \nCoreGraphics 32K 2 \nCoreServices 624K 2 \nCoreUI image data 5424K 40 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.4G 264 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 632.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 512K 32 \nStack 152.2M 33 \nStack Guard 56.0M 1 \nVM_ALLOCATE 275.3M 465 \nVM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated)\n__AUTH 1938K 361 \n__AUTH_CONST 24.9M 590 \n__CTF 756 1 \n__DATA 21.0M 758 \n__DATA_CONST 38.5M 765 \n__DATA_DIRTY 1984K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 803.2M 174 \n__OBJC_CONST 4758K 325 \n__OBJC_RO 65.5M 1 \n__OBJC_RW 1988K 1 \n__TEXT 842.2M 786 \ndyld private memory 304K 3 \nmapped file 301.2M 63 \nshared memory 3248K 29 \n=========== ======= ======= \nTOTAL 5.0G 5103 \nTOTAL, minus reserved VM space 4.0G 5103 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6112d17137f5d11121dcd4e2",
"factorPackIds" : {
},
"deploymentId" : 240000276
},
{
"rolloutId" : "63582c5f8a53461413999550",
"factorPackIds" : {
},
"deploymentId" : 240000002
}
],
"experiments" : [
{
"treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3",
"experimentId" : "6317d2003d24842ff850182a",
"deploymentId" : 400000012
},
{
"treatmentId" : "6dd670af-0633-45e4-ae5f-122ae4df02be",
"experimentId" : "64406ba83deb637ac8a04419",
"deploymentId" : 900000005
}
]
},
"reportNotes" : [
"dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"
Opened 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc as #1.1, grid
size 128,128,128, pixel 2.02, shown at level 0.00514, step 1, values float32
Opened 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc as #1.2, grid
size 128,128,128, pixel 2.04, shown at level 0.00677, step 1, values float32
Opened 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc as #1.4, grid
size 128,128,128, pixel 2.04, shown at level 0.00791, step 1, values float32
Opened OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc as #3, grid size
256,256,256, pixel 1.02, shown at level 0.0602, step 1, values float32
Opened OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc as #2, grid size 256,256,256,
pixel 1.02, shown at level 0.0656, step 1, values float32
Log from Wed May 31 15:06:29 2023UCSF ChimeraX version: 1.6.dev202303282212
(2023-03-28)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs" format
> session
Opened 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc as #1.1, grid
size 128,128,128, pixel 2.02, shown at level 0.00688, step 1, values float32
Opened 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc as #1.2, grid
size 128,128,128, pixel 2.04, shown at level 0.00729, step 1, values float32
Opened 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc as #1.3, grid size
256,256,256, pixel 0.836, shown at level 0.065, step 1, values float32
Opened 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc as #1.4, grid
size 128,128,128, pixel 2.04, shown at level 0.00765, step 1, values float32
Log from Wed May 24 16:13:30 2023UCSF ChimeraX version: 1.6.dev202303282212
(2023-03-28)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc"
> "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc"
> "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc"
> "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc"
Opened 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc as #1.1, grid
size 128,128,128, pixel 2.02, shown at level 0.0417, step 1, values float32
Opened 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc as #1.2, grid
size 128,128,128, pixel 2.04, shown at level 0.0396, step 1, values float32
Opened 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc as #1.3, grid size
256,256,256, pixel 0.836, shown at level 0.506, step 1, values float32
Opened 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc as #1.4, grid
size 128,128,128, pixel 2.04, shown at level 0.0411, step 1, values float32
> color #1.1 #bf8e8fff models
> color #1.2 #8a8abfff models
> color #1.2 #8e8cbfff models
> color #1.3 #7c93bfff models
> color #1.4 #64bfbeff models
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 4 maps.
> select add #1.1
2 models selected
> select add #1.2
4 models selected
> select add #1.3
6 models selected
> select add #1.4
8 models selected
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 4 maps.
> select subtract #1.4
6 models selected
> select subtract #1.3
4 models selected
> fitmap #1.1 inMap #1.2
Fit map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc in map
1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc using 20964 points
correlation = 0.8488, correlation about mean = 0.133, overlap = 31.78
steps = 188, shift = 9.06, angle = 54.8 degrees
Position of 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1)
relative to 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc (#1.2)
coordinates:
Matrix rotation and translation
0.68647085 -0.45491054 -0.56728668 167.02576868
0.11461749 0.83808332 -0.53336590 82.34034332
0.71806727 0.30111917 0.62746047 -84.05259572
Axis 0.51042305 -0.78620254 0.34835882
Axis point 209.55789698 0.00000000 186.49480491
Rotation angle (degrees) 54.82979428
Shift along axis -8.76284825
> hide #!1.2 models
> show #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.2 models
> show #!1.2 models
> select subtract #1.2
2 models selected
> select add #1.2
4 models selected
> select subtract #1.1
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1.2,0.10818,0.83417,-0.54079,61.492,0.97055,-0.20639,-0.1242,65.659,-0.21522,-0.51143,-0.83194,331.33
> view matrix models
> #1.2,-0.75062,0.6382,-0.17111,138.7,0.62121,0.5934,-0.51184,49.298,-0.22512,-0.49049,-0.84187,330.96
> view matrix models
> #1.2,-0.83842,0.535,-0.10406,153.92,0.48644,0.64842,-0.5856,67.06,-0.24582,-0.54159,-0.8039,335.25
> view matrix models
> #1.2,-0.8618,0.47744,-0.17131,173.06,0.4873,0.68552,-0.54093,56.192,-0.14082,-0.54965,-0.82344,326.77
> view matrix models
> #1.2,-0.62937,0.72253,-0.28608,128.38,0.76395,0.50782,-0.39812,29.511,-0.14238,-0.46912,-0.87158,322.42
> ui mousemode right "translate selected models"
> view matrix models
> #1.2,-0.62937,0.72253,-0.28608,147.95,0.76395,0.50782,-0.39812,26.848,-0.14238,-0.46912,-0.87158,323.58
> ui mousemode right "rotate selected models"
> view matrix models
> #1.2,-0.60162,0.77864,-0.17826,123.23,0.7915,0.55104,-0.26437,0.50613,-0.10762,-0.30014,-0.94781,306.87
> fitmap #1.2 inMap #1.1
Fit map 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc in map
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 20966 points
correlation = 0.9904, correlation about mean = 0.6218, overlap = 49.22
steps = 72, shift = 3.17, angle = 4.68 degrees
Position of 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc (#1.2)
relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1)
coordinates:
Matrix rotation and translation
-0.39120368 0.34261777 -0.85415031 245.40230828
0.89985596 -0.05215568 -0.43305777 77.72830665
-0.19292207 -0.93802604 -0.28790315 313.23548684
Axis -0.50428036 -0.66032745 0.55647908
Axis point 29.28151475 0.00000000 239.15944670
Rotation angle (degrees) 149.95486426
Shift along axis -0.76870384
> hide #!1.2 models
> select subtract #1.2
Nothing selected
> show #!1.3 models
> select add #1.3
2 models selected
> view matrix models
> #1.3,-0.081367,0.54691,-0.83323,138.1,0.33087,0.80341,0.49503,-62.44,0.94016,-0.23541,-0.24633,45.613
> view matrix models
> #1.3,-0.21066,0.58342,-0.78438,143.29,0.37182,0.7899,0.48766,-64.66,0.90409,-0.18891,-0.38333,57.801
> view matrix models
> #1.3,0.034592,-0.88144,-0.47102,243.37,-0.27353,-0.46166,0.84383,103.74,-0.96124,0.099647,-0.25707,214.27
> ui mousemode right "translate selected models"
> view matrix models
> #1.3,0.034592,-0.88144,-0.47102,275.28,-0.27353,-0.46166,0.84383,124.94,-0.96124,0.099647,-0.25707,229.11
> view matrix models
> #1.3,0.034592,-0.88144,-0.47102,268.55,-0.27353,-0.46166,0.84383,124.07,-0.96124,0.099647,-0.25707,248.02
> fitmap #1.3 inMap #1.1
Fit map 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc in map
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 167596 points
correlation = 0.9922, correlation about mean = 0.5143, overlap = 4942
steps = 92, shift = 4.01, angle = 17.1 degrees
Position of 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc (#1.3) relative to
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates:
Matrix rotation and translation
-0.47649716 -0.71731006 -0.50834705 310.89473368
-0.58716553 -0.17071088 0.79126129 125.70153597
-0.65436006 0.67551763 -0.33983650 162.90371378
Axis -0.50926669 0.64245040 0.57262983
Axis point 212.09671900 0.00000000 11.28407839
Rotation angle (degrees) 173.47495138
Shift along axis 15.71219595
> hide #!1.3 models
> select subtract #1.3
Nothing selected
> show #!1.4 models
> select add #1.4
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1.4,0.082819,-0.92686,-0.36616,272.5,0.75868,-0.1796,0.62621,-8.7365,-0.64617,-0.32966,0.68832,155.99
> fitmap #1.4 inMap #1.1
Fit map 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc in map
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 20970 points
correlation = 0.9868, correlation about mean = 0.5591, overlap = 49.19
steps = 88, shift = 9.57, angle = 13 degrees
Position of 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc (#1.4)
relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1)
coordinates:
Matrix rotation and translation
-0.31321425 -0.81995246 0.47913965 209.88834607
0.56549393 0.24430235 0.78773916 -71.69439792
-0.76296360 0.51768169 0.38715916 108.92541154
Axis -0.14363107 0.66061722 0.73685480
Axis point 150.53405797 15.36713150 0.00000000
Rotation angle (degrees) 109.93027636
Shift along axis 2.75317107
> select subtract #1.4
Nothing selected
> show #!1.2 models
> show #!1.3 models
> volume #1.2 level 0.007295
> volume #1.1 level 0.00955
> volume #1.3 level 0.07745
> volume #1.4 level 0.01023
> volume #1.4 level 0.00894
> hide #!1.2 models
> volume #1.4 level 0.007653
> surface dust #1.1 size 20.2
> surface dust #1.4 size 20.4
> volume #1.1 level 0.006883
> show #!1.2 models
> select add #1.2
2 models selected
> view matrix models
> #1.2,-0.22052,-0.94065,0.25797,246.08,0.65074,0.055132,0.7573,-56.788,-0.72657,0.33487,0.59996,85.96
> view matrix models
> #1.2,-0.23384,-0.92492,0.29972,239.94,0.73649,0.032746,0.67566,-53.638,-0.63475,0.37874,0.67354,58.044
> ui mousemode right "translate selected models"
> view matrix models
> #1.2,-0.23384,-0.92492,0.29972,239.56,0.73649,0.032746,0.67566,-47.569,-0.63475,0.37874,0.67354,67.636
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 3 maps.
[Repeated 1 time(s)]
> hide #!1.4 models
> fitmap #1.2 inMap #1.1
Fit map 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc in map
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 60043 points
correlation = 0.9804, correlation about mean = 0.9132, overlap = 73.71
steps = 124, shift = 6.92, angle = 21.5 degrees
Position of 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc (#1.2)
relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1)
coordinates:
Matrix rotation and translation
-0.58988287 -0.45648126 0.66608037 176.86012929
0.64827307 0.22408810 0.72768575 -77.52055657
-0.48143559 0.86105133 0.16373878 56.62252122
Axis 0.08343400 0.71789027 0.69113843
Axis point 113.04471394 0.00000000 4.08477590
Rotation angle (degrees) 126.94355821
Shift along axis -1.76110418
> select subtract #1.2
Nothing selected
> show #!1.3 models
> show #!1.4 models
> volume #1.3 level 0.05761
> volume #1.3 level 0.06505
> surface dust #1.1 size 20.2
> surface dust #1.2 size 20.4
> surface dust #1.4 size 20.4
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"
> color #1.2 #7cbce7ff models
> color #1.2 #59a9d4ff models
> color #1.4 #b2d7eeff models
> color #1.4 #8cb4caff models
> color #1.4 #8bb3c8ff models
> color #1.4 #8db5cbff models
> set bgColor white
> graphics silhouettes true
> graphics silhouettes true width 1
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/Maps/sbd_interaction_top.png"
> width 1090 height 1067 supersample 3
> turn x 10
> turn x -10
> turn x -90
> turn x -10
> turn x 10
> turn y 180
[Repeated 1 time(s)]
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/Maps/sbd_interaction_side.png"
> width 1090 height 1067 supersample 3
> turn x -90
[Repeated 2 time(s)]
> hide #!1.2 models
> hide #!1.4 models
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/sbd_interaction_top_1d1_apo.png" width 1090 height
> 1067 supersample 3
> hide #!1.1 models
> show #!1.2 models
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/sbd_interaction_top_1E3D1_50mM_apo.png" width 1090
> height 1067 supersample 3
> show #!1.4 models
> hide #!1.2 models
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/sbd_interaction_top_1E3D1_100mM_apo.png" width
> 1090 height 1067 supersample 3
> show #!1.1 models
> hide #!1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.4 models
> color #1.1 E1A794
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1.1 #62cc8eff models
> color #1.1 E1A794 models
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1.1 #E1A794 models
> show #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.4 models
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/sbd_interaction_top.png" width
> 1090 height 1067 supersample 3
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"
——— End of log from Wed May 24 16:13:30 2023 ———
opened ChimeraX session
> open /Users/panos/Downloads/cryosparc_P52_J595_003_volume_map.mrc
> /Users/panos/Downloads/cryosparc_P52_J596_003_volume_map.mrc
Opened cryosparc_P52_J595_003_volume_map.mrc as #2.1, grid size 256,256,256,
pixel 1.02, shown at level 0.328, step 1, values float32
Opened cryosparc_P52_J596_003_volume_map.mrc as #2.2, grid size 256,256,256,
pixel 1.02, shown at level 0.275, step 1, values float32
> hide #!1.1 models
> hide #!1.2 models
> hide #!2.2 models
> select add #2.1
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2.1,0.0052656,0.99957,0.028847,11.446,-0.88357,-0.0088577,0.46821,192.88,0.46826,-0.027954,0.88315,-48.023
> view matrix models
> #2.1,0.46984,0.87214,-0.13645,-17.144,-0.78165,0.48286,0.39481,125.6,0.41022,-0.078841,0.90857,-36.608
> ui mousemode right "translate selected models"
> view matrix models
> #2.1,0.46984,0.87214,-0.13645,-32.754,-0.78165,0.48286,0.39481,134.75,0.41022,-0.078841,0.90857,-34.717
> fitmap #2.1 inMap #1.4
Fit map cryosparc_P52_J595_003_volume_map.mrc in map
1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc using 167715 points
correlation = 0.989, correlation about mean = 0.5809, overlap = 3419
steps = 88, shift = 10.8, angle = 12.9 degrees
Position of cryosparc_P52_J595_003_volume_map.mrc (#2.1) relative to
1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc (#1.4) coordinates:
Matrix rotation and translation
-0.92961977 0.25968284 -0.26148020 246.04814088
-0.27734938 -0.96022211 0.03241644 284.17983705
-0.24266108 0.10265633 0.96466433 19.39400389
Axis 0.12960992 -0.03472592 -0.99095680
Axis point 144.09594256 124.63498993 0.00000000
Rotation angle (degrees) 164.27821183
Shift along axis 2.80325198
> volume #1.4 level 0.007912
> volume #2.1 level 0.1142
> volume #2.1 level 0.07622
> show #!2.2 models
> select subtract #2.1
Nothing selected
> select add #2
5 models selected
> select subtract #2
Nothing selected
> select add #2.2
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2.2,0.53075,0.70697,0.46743,-97.043,0.83443,-0.53248,-0.14212,121.69,0.14842,0.46546,-0.87253,158.03
> view matrix models
> #2.2,0.6639,0.51948,0.53793,-97.805,0.67931,-0.71971,-0.14336,169.27,0.31268,0.4606,-0.83071,131.03
> fitmap #2.2 inMap #2.1
Fit map cryosparc_P52_J596_003_volume_map.mrc in map
cryosparc_P52_J595_003_volume_map.mrc using 167703 points
correlation = 0.8966, correlation about mean = 0.0221, overlap = 2.209e+04
steps = 184, shift = 10.9, angle = 28 degrees
Position of cryosparc_P52_J596_003_volume_map.mrc (#2.2) relative to
cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates:
Matrix rotation and translation
-0.24330368 0.95969982 -0.14063986 57.35698333
0.96446432 0.22397145 -0.14016194 -2.40697019
-0.10301407 -0.16974404 -0.98008931 296.17081794
Axis -0.61502703 -0.78225930 0.09905629
Axis point 27.34494106 -0.00000000 148.35474276
Rotation angle (degrees) 178.62193622
Shift along axis -4.05563718
> volume #2.2 level 0.02439
> volume #2.2 level 0.23
> view matrix models
> #2.2,-0.78903,0.52752,-0.31488,210.36,-0.59732,-0.7786,0.19236,299.16,-0.14369,0.33986,0.92943,-14.439
> ui mousemode right "translate selected models"
> view matrix models
> #2.2,-0.78903,0.52752,-0.31488,199.71,-0.59732,-0.7786,0.19236,290.44,-0.14369,0.33986,0.92943,-17.478
> fitmap #2.2 inMap #2.1
Fit map cryosparc_P52_J596_003_volume_map.mrc in map
cryosparc_P52_J595_003_volume_map.mrc using 212042 points
correlation = 0.9137, correlation about mean = 0.3495, overlap = 2.591e+04
steps = 164, shift = 3.62, angle = 20.1 degrees
Position of cryosparc_P52_J596_003_volume_map.mrc (#2.2) relative to
cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates:
Matrix rotation and translation
-0.09480475 0.99363161 -0.06089567 21.92391062
-0.98915450 -0.08713090 0.11824368 260.01646925
0.11218477 0.07144529 0.99111561 -23.81168159
Axis -0.02350643 -0.08693682 -0.99593646
Axis point 129.89168863 121.03897454 0.00000000
Rotation angle (degrees) 95.47491960
Shift along axis 0.59456482
> volume #2.1 level 0.233
> volume #2.2 level 0.2567
> volume #2.2 level 0.1103
> volume #2.2 level 0.1638
> volume #2.2 level 0.0258
> volume #2.1 level 0.07266
> select add #2.1
4 models selected
> select subtract #2.1
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2.2,0.5058,0.86052,-0.060656,-51.241,0.85769,-0.49411,0.14223,63.9,0.092424,-0.12397,-0.98797,249.54
> ui mousemode right "translate selected models"
> view matrix models
> #2.2,0.5058,0.86052,-0.060656,-54.164,0.85769,-0.49411,0.14223,64.857,0.092424,-0.12397,-0.98797,269.31
> fitmap #2.2 inMap #2.1
Fit map cryosparc_P52_J596_003_volume_map.mrc in map
cryosparc_P52_J595_003_volume_map.mrc using 558655 points
correlation = 0.8027, correlation about mean = 0.5234, overlap = 3.041e+04
steps = 284, shift = 9.18, angle = 28.6 degrees
Position of cryosparc_P52_J596_003_volume_map.mrc (#2.2) relative to
cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates:
Matrix rotation and translation
-0.31883830 0.94102391 -0.11320837 66.54660362
0.94700391 0.31136446 -0.07896687 -25.13485746
-0.03906065 -0.13238643 -0.99042824 283.34701198
Axis -0.58329652 -0.80963049 0.06529652
Axis point 38.31902308 0.00000000 141.60166494
Rotation angle (degrees) 177.37544633
Shift along axis 0.03511925
> hide #!2.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.2 models
> hide #!2.1 models
> show #!2.1 models
> volume #2.1 level 0.09048
> open "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc"
Opened OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc as #3, grid size
256,256,256, pixel 1.02, shown at level 0.33, step 1, values float32
> hide #!2 models
> select add #2
5 models selected
> select subtract #2
Nothing selected
> select subtract #2.2
Nothing selected
> hide #!1.2 models
> hide #!1 models
> hide #!2.1 models
> show #!2.1 models
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.30238,0.94117,-0.15089,-0.71087,-0.93194,0.32515,0.16054,196.93,0.20016,0.092077,0.97543,-36.882
> fitmap #3 inMap #2.1
Fit map OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc in map
cryosparc_P52_J595_003_volume_map.mrc using 167676 points
correlation = 0.9901, correlation about mean = 0.7037, overlap = 2.819e+04
steps = 148, shift = 19.2, angle = 10.7 degrees
Position of OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc (#3) relative to
cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates:
Matrix rotation and translation
0.99999635 0.00194963 0.00186974 -0.52853933
-0.00194061 0.99998653 -0.00481380 1.02419600
-0.00187910 0.00481016 0.99998667 -0.37248314
Axis 0.87199756 0.33967159 -0.35248187
Axis point 0.00000000 76.68149382 211.25652730
Rotation angle (degrees) 0.31617934
Shift along axis 0.01829883
> select subtract #3
Nothing selected
> volume #3 level 0.04646
> hide #!2.1 models
> close #2
> show #!1.1 models
> show #!1.4 models
> open "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc"
Opened OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc as #2, grid size 256,256,256,
pixel 1.02, shown at level 0.329, step 1, values float32
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1.4 models
> volume #2 level 0.05655
> volume #2 level 0.1019
> volume #3 level 0.1014
> volume #2 level 0.1087
> volume #3 level 0.07278
> volume #2 level 0.08377
> hide #!1.1 models
> show #!1.1 models
> volume #1.1 level 0.00742
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> select add #2
2 models selected
> hide #!1.1 models
> hide #!1 models
> fitmap #2 inMap #3
Fit map OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc in map
OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc using 472776 points
correlation = 0.9442, correlation about mean = 0.7612, overlap = 3.822e+04
steps = 192, shift = 11, angle = 23.3 degrees
Position of OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc (#2) relative to
OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc (#3) coordinates:
Matrix rotation and translation
0.51970786 -0.85398888 -0.02463217 177.72476668
0.84697898 0.51123578 0.14582379 -67.15044938
-0.11193905 -0.09664870 0.98900388 28.36434461
Axis -0.14094125 0.05074860 0.98871641
Axis point 150.47590096 123.41410250 0.00000000
Rotation angle (degrees) 59.33791798
Shift along axis -0.41224873
> show #!1.1 models
> view matrix models
> #2,0.07653,-0.97681,0.19999,220.97,-0.99552,-0.086022,-0.039201,289.25,0.055495,-0.19609,-0.97901,272.14
> hide #!1.1 models
> hide #!1 models
> fitmap #2 inMap #3
Fit map OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc in map
OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc using 472776 points
correlation = 0.9921, correlation about mean = 0.9532, overlap = 4.086e+04
steps = 184, shift = 8.87, angle = 24.3 degrees
Position of OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc (#2) relative to
OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc (#3) coordinates:
Matrix rotation and translation
0.78893542 -0.61400746 -0.02399460 110.74537649
-0.60964780 -0.77725371 -0.15558352 332.46704065
0.07687955 0.13737360 -0.98753128 232.07897471
Axis 0.94542407 -0.32553859 0.01406940
Axis point 0.00000000 175.73396986 128.91565740
Rotation angle (degrees) 171.08701761
Shift along axis -0.26429381
> show #!1.1 models
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"
> show #!1.3 models
> hide #!1.3 models
> close #1.3
> select subtract #2
Nothing selected
> color #2 #8db5cbff models
> color #3 #59a9d4ff models
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"
> open
> /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_50mM/merged_bPD32s3-5_bPD33s1-2/Refine3D/job063/run_class001.mrc
Opened run_class001.mrc as #4, grid size 128,128,128, pixel 2.04, shown at
level 0.0389, step 1, values float32
> hide #!1.1 models
> hide #!1 models
> hide #!2 models
> hide #!3 models
> volume #4 level 0.006819
> open
> /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_50mM/merged_bPD32s3-5_bPD33s1-2/Refine3D/job064/run_class001.mrc
Opened run_class001.mrc as #5, grid size 128,128,128, pixel 2.04, shown at
level 0.0388, step 1, values float32
> volume #5 level 0.006305
> hide #!4 models
> hide #!5 models
> show #!3 models
> show #!2 models
> close #4
> close #5
> volume #3 level 0.04646
> volume #2 level 0.04975
> show #!1.1 models
> volume #3 level 0.0293
> volume #2 level 0.02933
> volume #1.1 level 0.005139
> open 3lg6
Summary of feedback from opening 3lg6 fetched from pdb
---
note | Fetching compressed mmCIF 3lg6 from
http://files.rcsb.org/download/3lg6.cif
3lg6 title:
Crystal structure of putative glutathione transferase from Coccidioides
immitis [more info...]
Chain information for 3lg6 #4
---
Chain | Description
A B C D | putative glutathione transferase
Non-standard residues in 3lg6 #4
---
SO4 — sulfate ion
3lg6 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> ui mousemode right zoom
> select add #4
7444 atoms, 6996 bonds, 3 pseudobonds, 1487 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,109.39,0,1,0,140.39,0,0,1,52.526
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.71077,-0.27307,0.64826,81.626,-0.19082,0.81217,0.55134,117.87,-0.67705,-0.51557,0.52516,55.244
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.71077,-0.27307,0.64826,66.182,-0.19082,0.81217,0.55134,146.78,-0.67705,-0.51557,0.52516,60.276
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.29061,-0.84495,0.44901,62.484,0.11699,0.49711,0.85976,137.67,-0.94966,-0.19732,0.24332,68.979
> volume #1.2 level 0.006775
> volume #3 level 0.02816
> volume #2 level 0.02933
> open 3lg6
3lg6 title:
Crystal structure of putative glutathione transferase from Coccidioides
immitis [more info...]
Chain information for 3lg6 #5
---
Chain | Description
A B C D | putative glutathione transferase
Non-standard residues in 3lg6 #5
---
SO4 — sulfate ion
3lg6 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> select subtract #4
Nothing selected
> select add #5
7444 atoms, 6996 bonds, 3 pseudobonds, 1487 residues, 2 models selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #5,1,0,0,100.72,0,1,0,255.9,0,0,1,109.83
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.98582,-0.070259,-0.15237,105.02,0.058937,0.99524,-0.077598,259.21,0.1571,0.067517,0.98527,112.92
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.98582,-0.070259,-0.15237,125.23,0.058937,0.99524,-0.077598,213.81,0.1571,0.067517,0.98527,128
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.066399,0.17038,-0.98314,141.63,0.84421,0.53482,0.035668,216.08,0.53188,-0.82761,-0.17935,163.97
> view matrix models
> #5,-0.23053,0.27222,-0.93421,138.78,-0.22497,-0.94897,-0.22101,198.05,-0.9467,0.15922,0.28001,138.24
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.23053,0.27222,-0.93421,133.99,-0.22497,-0.94897,-0.22101,202.59,-0.9467,0.15922,0.28001,126.71
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.41001,0.013975,-0.91197,128.7,0.5099,-0.82553,-0.24189,213.78,-0.75624,-0.56419,0.33135,121.13
> view matrix models
> #5,-0.7309,0.05276,-0.68044,117.18,0.33967,-0.83663,-0.42973,217.78,-0.59195,-0.54521,0.59357,114.63
> view matrix models
> #5,-0.74076,-0.045412,-0.67024,115.86,0.46457,-0.75529,-0.46228,221.18,-0.48523,-0.65381,0.58059,115.49
> view matrix models
> #5,-0.52082,-0.60453,-0.60274,111.55,0.85235,-0.40748,-0.32782,224.68,-0.047425,-0.68448,0.72749,115.92
> view matrix models
> #5,-0.097299,0.8805,-0.46395,125.26,-0.86505,-0.30534,-0.39807,205.91,-0.49216,0.36261,0.79139,117.2
> view matrix models
> #5,-0.15326,0.55921,-0.81474,133.48,-0.80294,-0.55106,-0.22719,198.85,-0.57602,0.61937,0.53347,126.98
> volume #3 level 0.07278
> volume #2 level 0.06562
> volume #3 level 0.06019
> save "/Users/panos/Google Drive/My Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"
——— End of log from Wed May 31 15:06:29 2023 ———
opened ChimeraX session
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> open /Users/panos/Downloads/cryosparc_P52_J601_003_volume_map.mrc
Opened cryosparc_P52_J601_003_volume_map.mrc as #6, grid size 256,256,256,
pixel 1.02, shown at level 0.329, step 1, values float32
> select subtract #5
Nothing selected
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1.1 models
> hide #!1 models
> volume #6 level 0.04193
> select add #6
2 models selected
> show #!1.1 models
> show #!3 models
> hide #!3 models
> show #!2 models
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.99711,-0.076008,-0.00073251,9.8452,0.075266,0.98593,0.14928,-28.465,-0.010624,-0.1489,0.9888,21.267
> view matrix models
> #6,-0.071047,0.87529,-0.47836,92.752,-0.88219,0.16867,0.43965,151.98,0.4655,0.45324,0.76018,-80.904
> ui mousemode right "translate selected models"
> view matrix models
> #6,-0.071047,0.87529,-0.47836,85.234,-0.88219,0.16867,0.43965,184.8,0.4655,0.45324,0.76018,-97.871
> ui mousemode right "rotate selected models"
> view matrix models
> #6,-0.15294,0.88053,-0.44863,90.712,-0.93908,0.011909,0.3435,224.66,0.30781,0.47383,0.82507,-89.679
> view matrix models
> #6,-0.061719,0.97049,-0.23309,38.188,-0.96873,-0.0020204,0.24809,243.37,0.2403,0.24112,0.94028,-68.528
> hide #!1.1 models
> fitmap #6 inMap #2
Fit map cryosparc_P52_J601_003_volume_map.mrc in map
OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc using 558125 points
correlation = 0.9686, correlation about mean = 0.8852, overlap = 4.208e+04
steps = 220, shift = 18.6, angle = 26 degrees
Position of cryosparc_P52_J601_003_volume_map.mrc (#6) relative to
OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc (#2) coordinates:
Matrix rotation and translation
0.79099295 -0.60672505 0.07883439 96.35590788
-0.61135113 -0.77871963 0.14087412 293.41833949
-0.02408197 -0.15962593 -0.98688379 283.97975289
Axis -0.94595397 0.32397379 -0.01456259
Axis point 0.00000000 175.20604846 128.84954060
Rotation angle (degrees) 170.86075309
Shift along axis -0.22388173
> show #!1.1 models
> volume #6 level 0.04193
> volume #2 level 0.06079
> volume #1.1 level 0.007615
> volume #2 level 0.05435
> volume #6 level 0.04934
> hide #!6 models
> select subtract #6
Nothing selected
> hide #!1.1 models
> show #!1.1 models
> show #!3 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!3 models
> volume #6 level 0.08822
> volume #2 level 0.08333
> volume #1.1 level 0.00952
> volume #2 level 0.0946
> open "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc"
Opened OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc as #7, grid size
256,256,256, pixel 1.02, shown at level 0.334, step 1, values float32
> select add #7
2 models selected
> view matrix models
> #7,0.16997,0.96154,-0.21574,24.139,-0.9809,0.14406,-0.13073,264.45,-0.094623,0.23384,0.96766,-11.959
> volume #7 level 0.1058
> volume #7 level 0.1041
> volume #7 level 0.09443
> volume #7 level 0.08472
> view matrix models
> #7,0.17473,0.95935,-0.22163,24.614,-0.98026,0.14833,-0.13073,263.84,-0.092542,0.2401,0.96633,-12.82
> view matrix models
> #7,0.5965,0.65257,-0.46727,42.798,-0.78581,0.59335,-0.17449,189.67,0.16339,0.47127,0.86673,-60.531
> hide #!2 models
> hide #!1.1 models
> hide #!1 models
> select subtract #7
Nothing selected
> fitmap #6 inMap #7
Fit map cryosparc_P52_J601_003_volume_map.mrc in map
OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc using 451834 points
correlation = 0.9781, correlation about mean = 0.8813, overlap = 4.247e+04
steps = 232, shift = 23.4, angle = 29.6 degrees
Position of cryosparc_P52_J601_003_volume_map.mrc (#6) relative to
OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc (#7) coordinates:
Matrix rotation and translation
0.99999998 0.00019444 -0.00001787 -0.06241495
-0.00019444 0.99999991 0.00037911 0.00014539
0.00001794 -0.00037911 0.99999993 0.05105057
Axis -0.88901279 -0.04198037 -0.45595385
Axis point 0.00000000 173.39168639 -3.90810666
Rotation angle (degrees) 0.02443339
Shift along axis 0.03220488
> show #!5 models
> hide #!5 models
> show #!2 models
> hide #!2 models
> undo
> close #6
> fitmap #7 inMap #1.1
Fit map OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc in map
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 473584 points
correlation = 0.9681, correlation about mean = 0.8617, overlap = 4873
steps = 136, shift = 22.9, angle = 29.8 degrees
Position of OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc (#7) relative to
1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates:
Matrix rotation and translation
0.39113611 0.76497938 0.51168261 -89.03899842
-0.78484570 -0.01311501 0.61955244 153.05376525
0.48065556 -0.64392122 0.59526103 71.84373590
Axis -0.63179321 0.01551491 -0.77498170
Axis point 23.60278076 132.74251589 0.00000000
Rotation angle (degrees) 90.76543364
Shift along axis 2.95126863
> show #!2 models
> volume #7 level 0.1074
> volume #1.1 level 0.01333
> volume #2 level 0.1091
> hide #!7 models
> volume #2 level 0.09943
> show #!1.4 models
> hide #!2 models
> show #!7 models
> volume #7 level 0.09766
> hide #!7 models
> hide #!1.4 models
> volume #1.1 level 0.01123
> volume #1.1 level 0.007425
> show #!2 models
> volume #2 level 0.00742
> volume #2 level 0.07021
> volume #7 level 0.07986
> color #7 #59a9d4ff models
> volume #7 level 0.08957
> volume #2 level 0.07665
> volume #1.1 level 0.008758
> save "/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My
> Drive/OpuA/Papers/SBD
> interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"
Unsupported scale factor (0.000000) detected on Display0
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: Z11B000V6N/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8419.80.7
OS Loader Version: 8419.80.7
Software:
System Software Overview:
System Version: macOS 13.2.1 (22D68)
Kernel Version: Darwin 22.3.0
Time since boot: 23 hours, 35 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
PHL BDM3270:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.20.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202303282212
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.dev0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-QScore: 1.0
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.2
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.6
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.1.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.2.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.9.0
typing-extensions: 4.5.0
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
