Phenix

• Command version of fit_loops
• Sent test case showing 4-processor version 5x slower than one processor
• Immediate to-dos:
  • Work up test case for fit_loops failing on 2gtk due to residue numbering
  • Document needs for JSON output from fit_loops
• Randy Read added full-map-only mode for voyager.emplace_local; need to update fit-in-map tool

ChimeraX completed

• Angle/torsion/bond length undoable
• Built DNA complement strand was being given RNA residue names
• Have DockPrep not bring up tools for skipped steps
• "Chimera" material preset
• Fixed memory leaks
  • Metadata dict keys/values
  • Residues.unique_sequences list append
  • Drawing code holding references to pseudobond groups (not a leak per se)