Opened 2 years ago

Closed 2 years ago

#8979 closed defect (can't reproduce)

Crash in event loop

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Thread 0x00001cfc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000020c4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Current thread 0x00002970 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/publico/Desktop/2bnh.pdb

2bnh.pdb title:  
Porcine ribonuclease inhibitor [more info...]  
  
Chain information for 2bnh.pdb #1  
---  
Chain | Description | UniProt  
A | ribonuclease inhibitor | RINI_PIG  
  
Non-standard residues in 2bnh.pdb #1  
---  
ACE — acetyl group  
  

> open C:/Users/publico/Desktop/6hit.pdb

6hit.pdb title:  
The crystal structure of haemoglobin from atlantic cod [more info...]  
  
Non-standard residues in 6hit.pdb #2  
---  
ACE — acetyl group  
HEM — protoporphyrin IX containing Fe (HEME)  
  

> close session

> open C:/Users/publico/Desktop/6hit.pdb

6hit.pdb title:  
The crystal structure of haemoglobin from atlantic cod [more info...]  
  
Non-standard residues in 6hit.pdb #1  
---  
ACE — acetyl group  
HEM — protoporphyrin IX containing Fe (HEME)  
  

> style stick

Changed 8812 atom styles  

> show cartoons

> style stick

Changed 8812 atom styles  

> style stick

Changed 8812 atom styles  

> style ball

Changed 8812 atom styles  

> style stick

Changed 8812 atom styles  

> hide atoms

> close session

> open C:/Users/publico/Desktop/1shs.pdb

1shs.pdb title:  
Small heat shock protein from methanococcus jannaschii [more info...]  
  
Chain information for 1shs.pdb #1  
---  
Chain | Description | UniProt  
A B C D E F G H | small heat shock protein | HSPS_METJA  
  

> show cartoons

> hide atoms

> close session

> open C:/Users/publico/Desktop/1a19.pdb

1a19.pdb title:  
Barstar (free), C82A mutant [more info...]  
  
Chain information for 1a19.pdb #1  
---  
Chain | Description | UniProt  
A B | barstar | BARS_BACAM  
  

> close session

> open C:/Users/publico/Desktop/1jug.pdb

1jug.pdb title:  
Lysozyme from echiDNA milk (tachyglossus aculeatus) [more info...]  
  
Chain information for 1jug.pdb #1  
---  
Chain | Description | UniProt  
A | lysozyme | LYSC1_TACAC  
  
Non-standard residues in 1jug.pdb #1  
---  
CA — calcium ion  
  

> close session

> open C:\Users\publico\Desktop\2bnh.pdb format pdb

2bnh.pdb title:  
Porcine ribonuclease inhibitor [more info...]  
  
Chain information for 2bnh.pdb #1  
---  
Chain | Description | UniProt  
A | ribonuclease inhibitor | RINI_PIG  
  
Non-standard residues in 2bnh.pdb #1  
---  
ACE — acetyl group  
  

> style stick

Changed 3478 atom styles  

> select /A:358

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:361

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:349

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select add /A:361

10 atoms, 8 bonds, 2 residues, 1 model selected  

> select ~sel

3468 atoms, 3442 bonds, 519 residues, 1 model selected  

> hide sel atoms

> hide sel cartoons

> undo

> delete atoms sel

> delete bonds sel

> undo

Undo failed, probably because structures have been modified.  

> close session

> open C:\Users\publico\Desktop\2bnh.pdb format pdb

2bnh.pdb title:  
Porcine ribonuclease inhibitor [more info...]  
  
Chain information for 2bnh.pdb #1  
---  
Chain | Description | UniProt  
A | ribonuclease inhibitor | RINI_PIG  
  
Non-standard residues in 2bnh.pdb #1  
---  
ACE — acetyl group  
  

> select /A:235

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select add /A:246

12 atoms, 10 bonds, 2 residues, 1 model selected  

> select ~sel

3466 atoms, 3440 bonds, 519 residues, 1 model selected  

> select /A:236

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:235

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select add /A:246

12 atoms, 10 bonds, 2 residues, 1 model selected  

> style sel ball

Changed 12 atom styles  

> select clear

> style ball

Changed 3478 atom styles  

> style sphere

Changed 3478 atom styles  

> style ball

Changed 3478 atom styles  

> show atoms

> select /A:246

8 atoms, 7 bonds, 1 residue, 1 model selected  
Drag select of 1 residues  

> select clear

> select /A:241@CA

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:241@CA

1 atom, 1 residue, 1 model selected  

> select /A:241@CB

1 atom, 1 residue, 1 model selected  

> select clear

> addh

Summary of feedback from adding hydrogens to 2bnh.pdb #1  
---  
notes | No usable SEQRES records for 2bnh.pdb (#1) chain A; guessing termini
instead  
Chain-initial residues that are actual N termini: /A ACE 1A  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini: /A SER 456  
Chain-final residues that are not actual C termini:  
612 hydrogen bonds  
3588 hydrogens added  
  

> ui mousemode right select

> select /A:237

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /A:238

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:237

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /A:238

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:237

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select add /A:238

17 atoms, 15 bonds, 2 residues, 1 model selected  

> select add /A:239

36 atoms, 33 bonds, 3 residues, 1 model selected  

> select add /A:240

46 atoms, 42 bonds, 4 residues, 1 model selected  

> select add /A:241

61 atoms, 56 bonds, 5 residues, 1 model selected  

> select add /A:243

72 atoms, 66 bonds, 6 residues, 1 model selected  

> select add /A:244

86 atoms, 80 bonds, 7 residues, 1 model selected  

> select add /A:245

93 atoms, 86 bonds, 8 residues, 1 model selected  

> select add /A:246

112 atoms, 104 bonds, 9 residues, 1 model selected  

> select ~sel

6954 atoms, 6927 bonds, 512 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /A:243@HG

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:243@HG

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:243@HG

1 atom, 1 residue, 1 model selected  

> select add /A:239@HG23

2 atoms, 2 residues, 1 model selected  

> select clear

> ui mousemode right select

> select /A:245

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select add /A:246

26 atoms, 24 bonds, 2 residues, 1 model selected  

> select add /A:244

40 atoms, 38 bonds, 3 residues, 1 model selected  

> select add /A:243

51 atoms, 48 bonds, 4 residues, 1 model selected  

> select add /A:240

61 atoms, 57 bonds, 5 residues, 1 model selected  

> select add /A:239

80 atoms, 75 bonds, 6 residues, 1 model selected  

> select add /A:241

95 atoms, 89 bonds, 7 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 95 atom styles  

> style sel ball

Changed 95 atom styles  

> hide sel atoms

> show sel atoms

> hide sel cartoons

> select /A:238

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select add /A:237

17 atoms, 15 bonds, 2 residues, 1 model selected  

> hide sel cartoons

> select clear

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> addh

Summary of feedback from adding hydrogens to 2bnh.pdb #1  
---  
notes | No usable SEQRES records for 2bnh.pdb (#1) chain A; guessing termini
instead  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: /A ALA 237, /A CYS 243  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /A LEU 246, /A GLU 241  
3 hydrogen bonds  
/A LEU 246 is not terminus, removing H atom from 'C'  
0 hydrogens added  
  

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> select /A:243@H

1 atom, 1 residue, 1 model selected  

> select add /A:240@O

2 atoms, 2 residues, 1 model selected  

> ui tool show Distances

> distance /A:243@H /A:240@O

Distance between /A CYS 243 H and ALA 240 O: 2.787Å  

> hide sel cartoons

> show sel cartoons

> hide sel cartoons

> select clear

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> select /A:241@H

1 atom, 1 residue, 1 model selected  

> select add /A:237@O

2 atoms, 2 residues, 1 model selected  

> distance /A:241@H /A:237@O

Distance between /A GLU 241 H and ALA 237 O: 2.387Å  

> select clear

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> select /A:245@H

1 atom, 1 residue, 1 model selected  

> select add /A:241@O

2 atoms, 2 residues, 1 model selected  

> show sel cartoons

> hide sel cartoons

> distance /A:245@H /A:241@O

Distance between /A GLY 245 H and GLU 241 O: 3.285Å  

> select clear

> ui tool show H-Bonds

> hbonds reveal true

2 hydrogen bonds found  

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> show cartoons

> save "C:/Users/publico/Downloads/2bnh Ph.cxs"

> close session

> open C:\Users\publico\Desktop\6hit.pdb format pdb

6hit.pdb title:  
The crystal structure of haemoglobin from atlantic cod [more info...]  
  
Non-standard residues in 6hit.pdb #1  
---  
ACE — acetyl group  
HEM — protoporphyrin IX containing Fe (HEME)  
  

> style stick

Changed 8812 atom styles  

> show cartoons

> style stick

Changed 8812 atom styles  

> close session

> open C:\Users\publico\Desktop\6hit.pdb format pdb

6hit.pdb title:  
The crystal structure of haemoglobin from atlantic cod [more info...]  
  
Non-standard residues in 6hit.pdb #1  
---  
ACE — acetyl group  
HEM — protoporphyrin IX containing Fe (HEME)  
  

> show cartoons

> hide atoms

> close session

> open C:\Users\publico\Desktop\1shs.pdb format pdb

1shs.pdb title:  
Small heat shock protein from methanococcus jannaschii [more info...]  
  
Chain information for 1shs.pdb #1  
---  
Chain | Description | UniProt  
A B C D E F G H | small heat shock protein | HSPS_METJA  
  

> show cartoons

> hide atoms

> ui mousemode right select

> select /D:36

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select add /D:37

17 atoms, 15 bonds, 2 residues, 1 model selected  

> select add /D:38

23 atoms, 20 bonds, 3 residues, 1 model selected  

> select add /D:39

27 atoms, 23 bonds, 4 residues, 1 model selected  

> select add /D:40

36 atoms, 31 bonds, 5 residues, 1 model selected  

> select add /D:41

40 atoms, 34 bonds, 6 residues, 1 model selected  

> select subtract /D:41

36 atoms, 31 bonds, 5 residues, 1 model selected  

> select clear

Drag select of 46 residues  

> select add /D:54

361 atoms, 7 bonds, 47 residues, 1 model selected  

> select add /D:55

370 atoms, 15 bonds, 48 residues, 1 model selected  

> select add /D:53

380 atoms, 25 bonds, 49 residues, 1 model selected  

> select add /D:48

388 atoms, 32 bonds, 50 residues, 1 model selected  

> select add /D:49

397 atoms, 40 bonds, 51 residues, 1 model selected  

> select add /D:47

405 atoms, 47 bonds, 52 residues, 1 model selected  

> select add /D:105

413 atoms, 54 bonds, 53 residues, 1 model selected  

> select add /D:104

422 atoms, 62 bonds, 54 residues, 1 model selected  

> select add /D:81

427 atoms, 66 bonds, 55 residues, 1 model selected  

> select add /D:82

436 atoms, 74 bonds, 56 residues, 1 model selected  

> select /D:68

8 atoms, 7 bonds, 1 residue, 1 model selected  
Drag select of 123 residues  

> select subtract /B:97

945 atoms, 122 residues, 1 model selected  
Drag select of 8 residues  
Drag select of 12 residues  

> select subtract /B:88

865 atoms, 113 residues, 1 model selected  

> select subtract /B:90

856 atoms, 112 residues, 1 model selected  

> select subtract /H:40

847 atoms, 111 residues, 1 model selected  

> select subtract /H:39

843 atoms, 110 residues, 1 model selected  

> select subtract /B:97

837 atoms, 109 residues, 1 model selected  

> select subtract /B:87

829 atoms, 108 residues, 1 model selected  
Drag select of 15 residues  

> select subtract /F:98

793 atoms, 104 residues, 1 model selected  

> select subtract /F:101

784 atoms, 103 residues, 1 model selected  

> select subtract /F:85

777 atoms, 102 residues, 1 model selected  

> select subtract /F:90

768 atoms, 101 residues, 1 model selected  

> select subtract /F:89

761 atoms, 100 residues, 1 model selected  

> select subtract /F:86

753 atoms, 99 residues, 1 model selected  

> select subtract /H:75

745 atoms, 98 residues, 1 model selected  

> select add /H:109

753 atoms, 7 bonds, 99 residues, 1 model selected  

> select subtract /H:109

745 atoms, 98 residues, 1 model selected  

> select subtract /H:74

741 atoms, 97 residues, 1 model selected  

> select subtract /H:33

734 atoms, 96 residues, 1 model selected  

> select subtract /H:34

730 atoms, 95 residues, 1 model selected  

> select ~sel

6414 atoms, 6500 bonds, 825 residues, 1 model selected  

> hide sel cartoons

> style sel ball

Changed 6414 atom styles  
Drag select of 95 residues  

> style sel ball

Changed 730 atom styles  

> hide sel cartoons

> show sel cartoons

> style sel stick

Changed 730 atom styles  

> style sel sphere

Changed 730 atom styles  

> style sel ball

Changed 730 atom styles  

> style sel ball

Changed 730 atom styles  

> style sel ball

Changed 730 atom styles  

> show sel atoms

> style sel ball

Changed 730 atom styles  

> hide sel cartoons

> select clear

> addh

Summary of feedback from adding hydrogens to 1shs.pdb #1  
---  
notes | No usable SEQRES records for 1shs.pdb (#1) chain A; guessing termini
instead  
No usable SEQRES records for 1shs.pdb (#1) chain B; guessing termini instead  
No usable SEQRES records for 1shs.pdb (#1) chain C; guessing termini instead  
No usable SEQRES records for 1shs.pdb (#1) chain D; guessing termini instead  
No usable SEQRES records for 1shs.pdb (#1) chain E; guessing termini instead  
3 messages similar to the above omitted  
Chain-initial residues that are actual N termini: /A THR 33, /B THR 33, /C THR
33, /D THR 33, /E THR 33, /F THR 33, /G THR 33, /H THR 33  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /A GLU 147, /B GLU 147, /C
GLU 147, /D GLU 147, /E GLU 147, /F GLU 147, /G GLU 147, /H GLU 147  
673 hydrogen bonds  
/A GLU 147 is not terminus, removing H atom from 'C'  
/B GLU 147 is not terminus, removing H atom from 'C'  
/C GLU 147 is not terminus, removing H atom from 'C'  
/D GLU 147 is not terminus, removing H atom from 'C'  
/E GLU 147 is not terminus, removing H atom from 'C'  
3 messages similar to the above omitted  
7480 hydrogens added  
  
Drag select of 1494 atoms, 1504 bonds  

> style sel ball

Changed 1494 atom styles  

> select clear

> close session

> open C:\Users\publico\Desktop\1shs.pdb format pdb

1shs.pdb title:  
Small heat shock protein from methanococcus jannaschii [more info...]  
  
Chain information for 1shs.pdb #1  
---  
Chain | Description | UniProt  
A B C D E F G H | small heat shock protein | HSPS_METJA  
  

> show cartoons

> hide atoms

> select /A:69

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select add /A:70

16 atoms, 14 bonds, 2 residues, 1 model selected  

> select add /A:71

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select add /A:72

29 atoms, 25 bonds, 4 residues, 1 model selected  

> select add /A:73

36 atoms, 31 bonds, 5 residues, 1 model selected  

> select add /A:68

44 atoms, 38 bonds, 6 residues, 1 model selected  

> select add /A:128

51 atoms, 44 bonds, 7 residues, 1 model selected  

> select add /A:129

59 atoms, 51 bonds, 8 residues, 1 model selected  

> select add /A:130

65 atoms, 56 bonds, 9 residues, 1 model selected  

> select add /A:131

72 atoms, 62 bonds, 10 residues, 1 model selected  

> select add /A:132

80 atoms, 69 bonds, 11 residues, 1 model selected  

> select add /A:133

88 atoms, 76 bonds, 12 residues, 1 model selected  

> select add /A:134

95 atoms, 83 bonds, 13 residues, 1 model selected  

> select ~sel

7049 atoms, 7146 bonds, 907 residues, 1 model selected  

> hide sel cartoons

Drag select of 13 residues  

> style sel ball

Changed 95 atom styles  

> hide sel atoms

> show sel atoms

> hide sel cartoons

> addh

Summary of feedback from adding hydrogens to 1shs.pdb #1  
---  
notes | No usable SEQRES records for 1shs.pdb (#1) chain A; guessing termini
instead  
No usable SEQRES records for 1shs.pdb (#1) chain B; guessing termini instead  
No usable SEQRES records for 1shs.pdb (#1) chain C; guessing termini instead  
No usable SEQRES records for 1shs.pdb (#1) chain D; guessing termini instead  
No usable SEQRES records for 1shs.pdb (#1) chain E; guessing termini instead  
3 messages similar to the above omitted  
Chain-initial residues that are actual N termini: /A THR 33, /B THR 33, /C THR
33, /D THR 33, /E THR 33, /F THR 33, /G THR 33, /H THR 33  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /A GLU 147, /B GLU 147, /C
GLU 147, /D GLU 147, /E GLU 147, /F GLU 147, /G GLU 147, /H GLU 147  
673 hydrogen bonds  
/A GLU 147 is not terminus, removing H atom from 'C'  
/B GLU 147 is not terminus, removing H atom from 'C'  
/C GLU 147 is not terminus, removing H atom from 'C'  
/D GLU 147 is not terminus, removing H atom from 'C'  
/E GLU 147 is not terminus, removing H atom from 'C'  
3 messages similar to the above omitted  
7480 hydrogens added  
  

> select clear

> ui tool show H-Bonds

> hbonds reveal true

621 hydrogen bonds found  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.13399 Core Profile Forward-Compatible Context 15.201.1151.1008
OpenGL renderer: AMD Radeon HD 8470D
OpenGL vendor: ATI Technologies Inc.
Manufacturer: To Be Filled By O.E.M.
Model: To Be Filled By O.E.M.
OS: Microsoft Windows 11 Pro (Build 22000)
Memory: 7,433,629,696
MaxProcessMemory: 137,438,953,344
CPU: 2 AMD A4-7300 APU with Radeon HD Graphics        
OSLanguage: es-ES
Locale: ('es_AR', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Component: UnassignedCore
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionCrash in event loop

comment:2 by Eric Pettersen, 2 years ago

Resolution: can't reproduce
Status: acceptedclosed
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