Opened 2 years ago
Closed 2 years ago
#8979 closed defect (can't reproduce)
Crash in event loop
Reported by: | Owned by: | Eric Pettersen | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Core | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.22000 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Thread 0x00001cfc (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x000020c4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Current thread 0x00002970 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:/Users/publico/Desktop/2bnh.pdb 2bnh.pdb title: Porcine ribonuclease inhibitor [more info...] Chain information for 2bnh.pdb #1 --- Chain | Description | UniProt A | ribonuclease inhibitor | RINI_PIG Non-standard residues in 2bnh.pdb #1 --- ACE — acetyl group > open C:/Users/publico/Desktop/6hit.pdb 6hit.pdb title: The crystal structure of haemoglobin from atlantic cod [more info...] Non-standard residues in 6hit.pdb #2 --- ACE — acetyl group HEM — protoporphyrin IX containing Fe (HEME) > close session > open C:/Users/publico/Desktop/6hit.pdb 6hit.pdb title: The crystal structure of haemoglobin from atlantic cod [more info...] Non-standard residues in 6hit.pdb #1 --- ACE — acetyl group HEM — protoporphyrin IX containing Fe (HEME) > style stick Changed 8812 atom styles > show cartoons > style stick Changed 8812 atom styles > style stick Changed 8812 atom styles > style ball Changed 8812 atom styles > style stick Changed 8812 atom styles > hide atoms > close session > open C:/Users/publico/Desktop/1shs.pdb 1shs.pdb title: Small heat shock protein from methanococcus jannaschii [more info...] Chain information for 1shs.pdb #1 --- Chain | Description | UniProt A B C D E F G H | small heat shock protein | HSPS_METJA > show cartoons > hide atoms > close session > open C:/Users/publico/Desktop/1a19.pdb 1a19.pdb title: Barstar (free), C82A mutant [more info...] Chain information for 1a19.pdb #1 --- Chain | Description | UniProt A B | barstar | BARS_BACAM > close session > open C:/Users/publico/Desktop/1jug.pdb 1jug.pdb title: Lysozyme from echiDNA milk (tachyglossus aculeatus) [more info...] Chain information for 1jug.pdb #1 --- Chain | Description | UniProt A | lysozyme | LYSC1_TACAC Non-standard residues in 1jug.pdb #1 --- CA — calcium ion > close session > open C:\Users\publico\Desktop\2bnh.pdb format pdb 2bnh.pdb title: Porcine ribonuclease inhibitor [more info...] Chain information for 2bnh.pdb #1 --- Chain | Description | UniProt A | ribonuclease inhibitor | RINI_PIG Non-standard residues in 2bnh.pdb #1 --- ACE — acetyl group > style stick Changed 3478 atom styles > select /A:358 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:361 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:349 4 atoms, 3 bonds, 1 residue, 1 model selected > select add /A:361 10 atoms, 8 bonds, 2 residues, 1 model selected > select ~sel 3468 atoms, 3442 bonds, 519 residues, 1 model selected > hide sel atoms > hide sel cartoons > undo > delete atoms sel > delete bonds sel > undo Undo failed, probably because structures have been modified. > close session > open C:\Users\publico\Desktop\2bnh.pdb format pdb 2bnh.pdb title: Porcine ribonuclease inhibitor [more info...] Chain information for 2bnh.pdb #1 --- Chain | Description | UniProt A | ribonuclease inhibitor | RINI_PIG Non-standard residues in 2bnh.pdb #1 --- ACE — acetyl group > select /A:235 4 atoms, 3 bonds, 1 residue, 1 model selected > select add /A:246 12 atoms, 10 bonds, 2 residues, 1 model selected > select ~sel 3466 atoms, 3440 bonds, 519 residues, 1 model selected > select /A:236 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:235 4 atoms, 3 bonds, 1 residue, 1 model selected > select add /A:246 12 atoms, 10 bonds, 2 residues, 1 model selected > style sel ball Changed 12 atom styles > select clear > style ball Changed 3478 atom styles > style sphere Changed 3478 atom styles > style ball Changed 3478 atom styles > show atoms > select /A:246 8 atoms, 7 bonds, 1 residue, 1 model selected Drag select of 1 residues > select clear > select /A:241@CA 1 atom, 1 residue, 1 model selected > select clear > select /A:241@CA 1 atom, 1 residue, 1 model selected > select /A:241@CB 1 atom, 1 residue, 1 model selected > select clear > addh Summary of feedback from adding hydrogens to 2bnh.pdb #1 --- notes | No usable SEQRES records for 2bnh.pdb (#1) chain A; guessing termini instead Chain-initial residues that are actual N termini: /A ACE 1A Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: /A SER 456 Chain-final residues that are not actual C termini: 612 hydrogen bonds 3588 hydrogens added > ui mousemode right select > select /A:237 10 atoms, 9 bonds, 1 residue, 1 model selected > select /A:238 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:237 10 atoms, 9 bonds, 1 residue, 1 model selected > select /A:238 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:237 10 atoms, 9 bonds, 1 residue, 1 model selected > select add /A:238 17 atoms, 15 bonds, 2 residues, 1 model selected > select add /A:239 36 atoms, 33 bonds, 3 residues, 1 model selected > select add /A:240 46 atoms, 42 bonds, 4 residues, 1 model selected > select add /A:241 61 atoms, 56 bonds, 5 residues, 1 model selected > select add /A:243 72 atoms, 66 bonds, 6 residues, 1 model selected > select add /A:244 86 atoms, 80 bonds, 7 residues, 1 model selected > select add /A:245 93 atoms, 86 bonds, 8 residues, 1 model selected > select add /A:246 112 atoms, 104 bonds, 9 residues, 1 model selected > select ~sel 6954 atoms, 6927 bonds, 512 residues, 1 model selected > delete atoms sel > delete bonds sel > select /A:243@HG 1 atom, 1 residue, 1 model selected > select clear > select /A:243@HG 1 atom, 1 residue, 1 model selected > select clear > select /A:243@HG 1 atom, 1 residue, 1 model selected > select add /A:239@HG23 2 atoms, 2 residues, 1 model selected > select clear > ui mousemode right select > select /A:245 7 atoms, 6 bonds, 1 residue, 1 model selected > select add /A:246 26 atoms, 24 bonds, 2 residues, 1 model selected > select add /A:244 40 atoms, 38 bonds, 3 residues, 1 model selected > select add /A:243 51 atoms, 48 bonds, 4 residues, 1 model selected > select add /A:240 61 atoms, 57 bonds, 5 residues, 1 model selected > select add /A:239 80 atoms, 75 bonds, 6 residues, 1 model selected > select add /A:241 95 atoms, 89 bonds, 7 residues, 1 model selected > show sel atoms > style sel stick Changed 95 atom styles > style sel ball Changed 95 atom styles > hide sel atoms > show sel atoms > hide sel cartoons > select /A:238 7 atoms, 6 bonds, 1 residue, 1 model selected > select add /A:237 17 atoms, 15 bonds, 2 residues, 1 model selected > hide sel cartoons > select clear > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > addh Summary of feedback from adding hydrogens to 2bnh.pdb #1 --- notes | No usable SEQRES records for 2bnh.pdb (#1) chain A; guessing termini instead Chain-initial residues that are actual N termini: Chain-initial residues that are not actual N termini: /A ALA 237, /A CYS 243 Chain-final residues that are actual C termini: Chain-final residues that are not actual C termini: /A LEU 246, /A GLU 241 3 hydrogen bonds /A LEU 246 is not terminus, removing H atom from 'C' 0 hydrogens added > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > select /A:243@H 1 atom, 1 residue, 1 model selected > select add /A:240@O 2 atoms, 2 residues, 1 model selected > ui tool show Distances > distance /A:243@H /A:240@O Distance between /A CYS 243 H and ALA 240 O: 2.787Å > hide sel cartoons > show sel cartoons > hide sel cartoons > select clear > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > select /A:241@H 1 atom, 1 residue, 1 model selected > select add /A:237@O 2 atoms, 2 residues, 1 model selected > distance /A:241@H /A:237@O Distance between /A GLU 241 H and ALA 237 O: 2.387Å > select clear > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > select /A:245@H 1 atom, 1 residue, 1 model selected > select add /A:241@O 2 atoms, 2 residues, 1 model selected > show sel cartoons > hide sel cartoons > distance /A:245@H /A:241@O Distance between /A GLY 245 H and GLU 241 O: 3.285Å > select clear > ui tool show H-Bonds > hbonds reveal true 2 hydrogen bonds found > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > hide cartoons > show cartoons > save "C:/Users/publico/Downloads/2bnh Ph.cxs" > close session > open C:\Users\publico\Desktop\6hit.pdb format pdb 6hit.pdb title: The crystal structure of haemoglobin from atlantic cod [more info...] Non-standard residues in 6hit.pdb #1 --- ACE — acetyl group HEM — protoporphyrin IX containing Fe (HEME) > style stick Changed 8812 atom styles > show cartoons > style stick Changed 8812 atom styles > close session > open C:\Users\publico\Desktop\6hit.pdb format pdb 6hit.pdb title: The crystal structure of haemoglobin from atlantic cod [more info...] Non-standard residues in 6hit.pdb #1 --- ACE — acetyl group HEM — protoporphyrin IX containing Fe (HEME) > show cartoons > hide atoms > close session > open C:\Users\publico\Desktop\1shs.pdb format pdb 1shs.pdb title: Small heat shock protein from methanococcus jannaschii [more info...] Chain information for 1shs.pdb #1 --- Chain | Description | UniProt A B C D E F G H | small heat shock protein | HSPS_METJA > show cartoons > hide atoms > ui mousemode right select > select /D:36 9 atoms, 8 bonds, 1 residue, 1 model selected > select add /D:37 17 atoms, 15 bonds, 2 residues, 1 model selected > select add /D:38 23 atoms, 20 bonds, 3 residues, 1 model selected > select add /D:39 27 atoms, 23 bonds, 4 residues, 1 model selected > select add /D:40 36 atoms, 31 bonds, 5 residues, 1 model selected > select add /D:41 40 atoms, 34 bonds, 6 residues, 1 model selected > select subtract /D:41 36 atoms, 31 bonds, 5 residues, 1 model selected > select clear Drag select of 46 residues > select add /D:54 361 atoms, 7 bonds, 47 residues, 1 model selected > select add /D:55 370 atoms, 15 bonds, 48 residues, 1 model selected > select add /D:53 380 atoms, 25 bonds, 49 residues, 1 model selected > select add /D:48 388 atoms, 32 bonds, 50 residues, 1 model selected > select add /D:49 397 atoms, 40 bonds, 51 residues, 1 model selected > select add /D:47 405 atoms, 47 bonds, 52 residues, 1 model selected > select add /D:105 413 atoms, 54 bonds, 53 residues, 1 model selected > select add /D:104 422 atoms, 62 bonds, 54 residues, 1 model selected > select add /D:81 427 atoms, 66 bonds, 55 residues, 1 model selected > select add /D:82 436 atoms, 74 bonds, 56 residues, 1 model selected > select /D:68 8 atoms, 7 bonds, 1 residue, 1 model selected Drag select of 123 residues > select subtract /B:97 945 atoms, 122 residues, 1 model selected Drag select of 8 residues Drag select of 12 residues > select subtract /B:88 865 atoms, 113 residues, 1 model selected > select subtract /B:90 856 atoms, 112 residues, 1 model selected > select subtract /H:40 847 atoms, 111 residues, 1 model selected > select subtract /H:39 843 atoms, 110 residues, 1 model selected > select subtract /B:97 837 atoms, 109 residues, 1 model selected > select subtract /B:87 829 atoms, 108 residues, 1 model selected Drag select of 15 residues > select subtract /F:98 793 atoms, 104 residues, 1 model selected > select subtract /F:101 784 atoms, 103 residues, 1 model selected > select subtract /F:85 777 atoms, 102 residues, 1 model selected > select subtract /F:90 768 atoms, 101 residues, 1 model selected > select subtract /F:89 761 atoms, 100 residues, 1 model selected > select subtract /F:86 753 atoms, 99 residues, 1 model selected > select subtract /H:75 745 atoms, 98 residues, 1 model selected > select add /H:109 753 atoms, 7 bonds, 99 residues, 1 model selected > select subtract /H:109 745 atoms, 98 residues, 1 model selected > select subtract /H:74 741 atoms, 97 residues, 1 model selected > select subtract /H:33 734 atoms, 96 residues, 1 model selected > select subtract /H:34 730 atoms, 95 residues, 1 model selected > select ~sel 6414 atoms, 6500 bonds, 825 residues, 1 model selected > hide sel cartoons > style sel ball Changed 6414 atom styles Drag select of 95 residues > style sel ball Changed 730 atom styles > hide sel cartoons > show sel cartoons > style sel stick Changed 730 atom styles > style sel sphere Changed 730 atom styles > style sel ball Changed 730 atom styles > style sel ball Changed 730 atom styles > style sel ball Changed 730 atom styles > show sel atoms > style sel ball Changed 730 atom styles > hide sel cartoons > select clear > addh Summary of feedback from adding hydrogens to 1shs.pdb #1 --- notes | No usable SEQRES records for 1shs.pdb (#1) chain A; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain B; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain C; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain D; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain E; guessing termini instead 3 messages similar to the above omitted Chain-initial residues that are actual N termini: /A THR 33, /B THR 33, /C THR 33, /D THR 33, /E THR 33, /F THR 33, /G THR 33, /H THR 33 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: Chain-final residues that are not actual C termini: /A GLU 147, /B GLU 147, /C GLU 147, /D GLU 147, /E GLU 147, /F GLU 147, /G GLU 147, /H GLU 147 673 hydrogen bonds /A GLU 147 is not terminus, removing H atom from 'C' /B GLU 147 is not terminus, removing H atom from 'C' /C GLU 147 is not terminus, removing H atom from 'C' /D GLU 147 is not terminus, removing H atom from 'C' /E GLU 147 is not terminus, removing H atom from 'C' 3 messages similar to the above omitted 7480 hydrogens added Drag select of 1494 atoms, 1504 bonds > style sel ball Changed 1494 atom styles > select clear > close session > open C:\Users\publico\Desktop\1shs.pdb format pdb 1shs.pdb title: Small heat shock protein from methanococcus jannaschii [more info...] Chain information for 1shs.pdb #1 --- Chain | Description | UniProt A B C D E F G H | small heat shock protein | HSPS_METJA > show cartoons > hide atoms > select /A:69 8 atoms, 7 bonds, 1 residue, 1 model selected > select add /A:70 16 atoms, 14 bonds, 2 residues, 1 model selected > select add /A:71 24 atoms, 21 bonds, 3 residues, 1 model selected > select add /A:72 29 atoms, 25 bonds, 4 residues, 1 model selected > select add /A:73 36 atoms, 31 bonds, 5 residues, 1 model selected > select add /A:68 44 atoms, 38 bonds, 6 residues, 1 model selected > select add /A:128 51 atoms, 44 bonds, 7 residues, 1 model selected > select add /A:129 59 atoms, 51 bonds, 8 residues, 1 model selected > select add /A:130 65 atoms, 56 bonds, 9 residues, 1 model selected > select add /A:131 72 atoms, 62 bonds, 10 residues, 1 model selected > select add /A:132 80 atoms, 69 bonds, 11 residues, 1 model selected > select add /A:133 88 atoms, 76 bonds, 12 residues, 1 model selected > select add /A:134 95 atoms, 83 bonds, 13 residues, 1 model selected > select ~sel 7049 atoms, 7146 bonds, 907 residues, 1 model selected > hide sel cartoons Drag select of 13 residues > style sel ball Changed 95 atom styles > hide sel atoms > show sel atoms > hide sel cartoons > addh Summary of feedback from adding hydrogens to 1shs.pdb #1 --- notes | No usable SEQRES records for 1shs.pdb (#1) chain A; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain B; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain C; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain D; guessing termini instead No usable SEQRES records for 1shs.pdb (#1) chain E; guessing termini instead 3 messages similar to the above omitted Chain-initial residues that are actual N termini: /A THR 33, /B THR 33, /C THR 33, /D THR 33, /E THR 33, /F THR 33, /G THR 33, /H THR 33 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: Chain-final residues that are not actual C termini: /A GLU 147, /B GLU 147, /C GLU 147, /D GLU 147, /E GLU 147, /F GLU 147, /G GLU 147, /H GLU 147 673 hydrogen bonds /A GLU 147 is not terminus, removing H atom from 'C' /B GLU 147 is not terminus, removing H atom from 'C' /C GLU 147 is not terminus, removing H atom from 'C' /D GLU 147 is not terminus, removing H atom from 'C' /E GLU 147 is not terminus, removing H atom from 'C' 3 messages similar to the above omitted 7480 hydrogens added > select clear > ui tool show H-Bonds > hbonds reveal true 621 hydrogen bonds found ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.13399 Core Profile Forward-Compatible Context 15.201.1151.1008 OpenGL renderer: AMD Radeon HD 8470D OpenGL vendor: ATI Technologies Inc. Manufacturer: To Be Filled By O.E.M. Model: To Be Filled By O.E.M. OS: Microsoft Windows 11 Pro (Build 22000) Memory: 7,433,629,696 MaxProcessMemory: 137,438,953,344 CPU: 2 AMD A4-7300 APU with Radeon HD Graphics OSLanguage: es-ES Locale: ('es_AR', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1
Change History (2)
comment:1 by , 2 years ago
Component: | Unassigned → Core |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 2 years ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
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