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Opened 2 years ago
Closed 2 years ago
#8979 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x00001cfc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000020c4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Current thread 0x00002970 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:/Users/publico/Desktop/2bnh.pdb
2bnh.pdb title:
Porcine ribonuclease inhibitor [more info...]
Chain information for 2bnh.pdb #1
---
Chain | Description | UniProt
A | ribonuclease inhibitor | RINI_PIG
Non-standard residues in 2bnh.pdb #1
---
ACE — acetyl group
> open C:/Users/publico/Desktop/6hit.pdb
6hit.pdb title:
The crystal structure of haemoglobin from atlantic cod [more info...]
Non-standard residues in 6hit.pdb #2
---
ACE — acetyl group
HEM — protoporphyrin IX containing Fe (HEME)
> close session
> open C:/Users/publico/Desktop/6hit.pdb
6hit.pdb title:
The crystal structure of haemoglobin from atlantic cod [more info...]
Non-standard residues in 6hit.pdb #1
---
ACE — acetyl group
HEM — protoporphyrin IX containing Fe (HEME)
> style stick
Changed 8812 atom styles
> show cartoons
> style stick
Changed 8812 atom styles
> style stick
Changed 8812 atom styles
> style ball
Changed 8812 atom styles
> style stick
Changed 8812 atom styles
> hide atoms
> close session
> open C:/Users/publico/Desktop/1shs.pdb
1shs.pdb title:
Small heat shock protein from methanococcus jannaschii [more info...]
Chain information for 1shs.pdb #1
---
Chain | Description | UniProt
A B C D E F G H | small heat shock protein | HSPS_METJA
> show cartoons
> hide atoms
> close session
> open C:/Users/publico/Desktop/1a19.pdb
1a19.pdb title:
Barstar (free), C82A mutant [more info...]
Chain information for 1a19.pdb #1
---
Chain | Description | UniProt
A B | barstar | BARS_BACAM
> close session
> open C:/Users/publico/Desktop/1jug.pdb
1jug.pdb title:
Lysozyme from echiDNA milk (tachyglossus aculeatus) [more info...]
Chain information for 1jug.pdb #1
---
Chain | Description | UniProt
A | lysozyme | LYSC1_TACAC
Non-standard residues in 1jug.pdb #1
---
CA — calcium ion
> close session
> open C:\Users\publico\Desktop\2bnh.pdb format pdb
2bnh.pdb title:
Porcine ribonuclease inhibitor [more info...]
Chain information for 2bnh.pdb #1
---
Chain | Description | UniProt
A | ribonuclease inhibitor | RINI_PIG
Non-standard residues in 2bnh.pdb #1
---
ACE — acetyl group
> style stick
Changed 3478 atom styles
> select /A:358
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:361
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:349
4 atoms, 3 bonds, 1 residue, 1 model selected
> select add /A:361
10 atoms, 8 bonds, 2 residues, 1 model selected
> select ~sel
3468 atoms, 3442 bonds, 519 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> undo
> delete atoms sel
> delete bonds sel
> undo
Undo failed, probably because structures have been modified.
> close session
> open C:\Users\publico\Desktop\2bnh.pdb format pdb
2bnh.pdb title:
Porcine ribonuclease inhibitor [more info...]
Chain information for 2bnh.pdb #1
---
Chain | Description | UniProt
A | ribonuclease inhibitor | RINI_PIG
Non-standard residues in 2bnh.pdb #1
---
ACE — acetyl group
> select /A:235
4 atoms, 3 bonds, 1 residue, 1 model selected
> select add /A:246
12 atoms, 10 bonds, 2 residues, 1 model selected
> select ~sel
3466 atoms, 3440 bonds, 519 residues, 1 model selected
> select /A:236
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:235
4 atoms, 3 bonds, 1 residue, 1 model selected
> select add /A:246
12 atoms, 10 bonds, 2 residues, 1 model selected
> style sel ball
Changed 12 atom styles
> select clear
> style ball
Changed 3478 atom styles
> style sphere
Changed 3478 atom styles
> style ball
Changed 3478 atom styles
> show atoms
> select /A:246
8 atoms, 7 bonds, 1 residue, 1 model selected
Drag select of 1 residues
> select clear
> select /A:241@CA
1 atom, 1 residue, 1 model selected
> select clear
> select /A:241@CA
1 atom, 1 residue, 1 model selected
> select /A:241@CB
1 atom, 1 residue, 1 model selected
> select clear
> addh
Summary of feedback from adding hydrogens to 2bnh.pdb #1
---
notes | No usable SEQRES records for 2bnh.pdb (#1) chain A; guessing termini
instead
Chain-initial residues that are actual N termini: /A ACE 1A
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini: /A SER 456
Chain-final residues that are not actual C termini:
612 hydrogen bonds
3588 hydrogens added
> ui mousemode right select
> select /A:237
10 atoms, 9 bonds, 1 residue, 1 model selected
> select /A:238
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:237
10 atoms, 9 bonds, 1 residue, 1 model selected
> select /A:238
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:237
10 atoms, 9 bonds, 1 residue, 1 model selected
> select add /A:238
17 atoms, 15 bonds, 2 residues, 1 model selected
> select add /A:239
36 atoms, 33 bonds, 3 residues, 1 model selected
> select add /A:240
46 atoms, 42 bonds, 4 residues, 1 model selected
> select add /A:241
61 atoms, 56 bonds, 5 residues, 1 model selected
> select add /A:243
72 atoms, 66 bonds, 6 residues, 1 model selected
> select add /A:244
86 atoms, 80 bonds, 7 residues, 1 model selected
> select add /A:245
93 atoms, 86 bonds, 8 residues, 1 model selected
> select add /A:246
112 atoms, 104 bonds, 9 residues, 1 model selected
> select ~sel
6954 atoms, 6927 bonds, 512 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select /A:243@HG
1 atom, 1 residue, 1 model selected
> select clear
> select /A:243@HG
1 atom, 1 residue, 1 model selected
> select clear
> select /A:243@HG
1 atom, 1 residue, 1 model selected
> select add /A:239@HG23
2 atoms, 2 residues, 1 model selected
> select clear
> ui mousemode right select
> select /A:245
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add /A:246
26 atoms, 24 bonds, 2 residues, 1 model selected
> select add /A:244
40 atoms, 38 bonds, 3 residues, 1 model selected
> select add /A:243
51 atoms, 48 bonds, 4 residues, 1 model selected
> select add /A:240
61 atoms, 57 bonds, 5 residues, 1 model selected
> select add /A:239
80 atoms, 75 bonds, 6 residues, 1 model selected
> select add /A:241
95 atoms, 89 bonds, 7 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 95 atom styles
> style sel ball
Changed 95 atom styles
> hide sel atoms
> show sel atoms
> hide sel cartoons
> select /A:238
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add /A:237
17 atoms, 15 bonds, 2 residues, 1 model selected
> hide sel cartoons
> select clear
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> addh
Summary of feedback from adding hydrogens to 2bnh.pdb #1
---
notes | No usable SEQRES records for 2bnh.pdb (#1) chain A; guessing termini
instead
Chain-initial residues that are actual N termini:
Chain-initial residues that are not actual N termini: /A ALA 237, /A CYS 243
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /A LEU 246, /A GLU 241
3 hydrogen bonds
/A LEU 246 is not terminus, removing H atom from 'C'
0 hydrogens added
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> select /A:243@H
1 atom, 1 residue, 1 model selected
> select add /A:240@O
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> distance /A:243@H /A:240@O
Distance between /A CYS 243 H and ALA 240 O: 2.787Å
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> select clear
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> select /A:241@H
1 atom, 1 residue, 1 model selected
> select add /A:237@O
2 atoms, 2 residues, 1 model selected
> distance /A:241@H /A:237@O
Distance between /A GLU 241 H and ALA 237 O: 2.387Å
> select clear
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> select /A:245@H
1 atom, 1 residue, 1 model selected
> select add /A:241@O
2 atoms, 2 residues, 1 model selected
> show sel cartoons
> hide sel cartoons
> distance /A:245@H /A:241@O
Distance between /A GLY 245 H and GLU 241 O: 3.285Å
> select clear
> ui tool show H-Bonds
> hbonds reveal true
2 hydrogen bonds found
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> show cartoons
> save "C:/Users/publico/Downloads/2bnh Ph.cxs"
> close session
> open C:\Users\publico\Desktop\6hit.pdb format pdb
6hit.pdb title:
The crystal structure of haemoglobin from atlantic cod [more info...]
Non-standard residues in 6hit.pdb #1
---
ACE — acetyl group
HEM — protoporphyrin IX containing Fe (HEME)
> style stick
Changed 8812 atom styles
> show cartoons
> style stick
Changed 8812 atom styles
> close session
> open C:\Users\publico\Desktop\6hit.pdb format pdb
6hit.pdb title:
The crystal structure of haemoglobin from atlantic cod [more info...]
Non-standard residues in 6hit.pdb #1
---
ACE — acetyl group
HEM — protoporphyrin IX containing Fe (HEME)
> show cartoons
> hide atoms
> close session
> open C:\Users\publico\Desktop\1shs.pdb format pdb
1shs.pdb title:
Small heat shock protein from methanococcus jannaschii [more info...]
Chain information for 1shs.pdb #1
---
Chain | Description | UniProt
A B C D E F G H | small heat shock protein | HSPS_METJA
> show cartoons
> hide atoms
> ui mousemode right select
> select /D:36
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add /D:37
17 atoms, 15 bonds, 2 residues, 1 model selected
> select add /D:38
23 atoms, 20 bonds, 3 residues, 1 model selected
> select add /D:39
27 atoms, 23 bonds, 4 residues, 1 model selected
> select add /D:40
36 atoms, 31 bonds, 5 residues, 1 model selected
> select add /D:41
40 atoms, 34 bonds, 6 residues, 1 model selected
> select subtract /D:41
36 atoms, 31 bonds, 5 residues, 1 model selected
> select clear
Drag select of 46 residues
> select add /D:54
361 atoms, 7 bonds, 47 residues, 1 model selected
> select add /D:55
370 atoms, 15 bonds, 48 residues, 1 model selected
> select add /D:53
380 atoms, 25 bonds, 49 residues, 1 model selected
> select add /D:48
388 atoms, 32 bonds, 50 residues, 1 model selected
> select add /D:49
397 atoms, 40 bonds, 51 residues, 1 model selected
> select add /D:47
405 atoms, 47 bonds, 52 residues, 1 model selected
> select add /D:105
413 atoms, 54 bonds, 53 residues, 1 model selected
> select add /D:104
422 atoms, 62 bonds, 54 residues, 1 model selected
> select add /D:81
427 atoms, 66 bonds, 55 residues, 1 model selected
> select add /D:82
436 atoms, 74 bonds, 56 residues, 1 model selected
> select /D:68
8 atoms, 7 bonds, 1 residue, 1 model selected
Drag select of 123 residues
> select subtract /B:97
945 atoms, 122 residues, 1 model selected
Drag select of 8 residues
Drag select of 12 residues
> select subtract /B:88
865 atoms, 113 residues, 1 model selected
> select subtract /B:90
856 atoms, 112 residues, 1 model selected
> select subtract /H:40
847 atoms, 111 residues, 1 model selected
> select subtract /H:39
843 atoms, 110 residues, 1 model selected
> select subtract /B:97
837 atoms, 109 residues, 1 model selected
> select subtract /B:87
829 atoms, 108 residues, 1 model selected
Drag select of 15 residues
> select subtract /F:98
793 atoms, 104 residues, 1 model selected
> select subtract /F:101
784 atoms, 103 residues, 1 model selected
> select subtract /F:85
777 atoms, 102 residues, 1 model selected
> select subtract /F:90
768 atoms, 101 residues, 1 model selected
> select subtract /F:89
761 atoms, 100 residues, 1 model selected
> select subtract /F:86
753 atoms, 99 residues, 1 model selected
> select subtract /H:75
745 atoms, 98 residues, 1 model selected
> select add /H:109
753 atoms, 7 bonds, 99 residues, 1 model selected
> select subtract /H:109
745 atoms, 98 residues, 1 model selected
> select subtract /H:74
741 atoms, 97 residues, 1 model selected
> select subtract /H:33
734 atoms, 96 residues, 1 model selected
> select subtract /H:34
730 atoms, 95 residues, 1 model selected
> select ~sel
6414 atoms, 6500 bonds, 825 residues, 1 model selected
> hide sel cartoons
> style sel ball
Changed 6414 atom styles
Drag select of 95 residues
> style sel ball
Changed 730 atom styles
> hide sel cartoons
> show sel cartoons
> style sel stick
Changed 730 atom styles
> style sel sphere
Changed 730 atom styles
> style sel ball
Changed 730 atom styles
> style sel ball
Changed 730 atom styles
> style sel ball
Changed 730 atom styles
> show sel atoms
> style sel ball
Changed 730 atom styles
> hide sel cartoons
> select clear
> addh
Summary of feedback from adding hydrogens to 1shs.pdb #1
---
notes | No usable SEQRES records for 1shs.pdb (#1) chain A; guessing termini
instead
No usable SEQRES records for 1shs.pdb (#1) chain B; guessing termini instead
No usable SEQRES records for 1shs.pdb (#1) chain C; guessing termini instead
No usable SEQRES records for 1shs.pdb (#1) chain D; guessing termini instead
No usable SEQRES records for 1shs.pdb (#1) chain E; guessing termini instead
3 messages similar to the above omitted
Chain-initial residues that are actual N termini: /A THR 33, /B THR 33, /C THR
33, /D THR 33, /E THR 33, /F THR 33, /G THR 33, /H THR 33
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /A GLU 147, /B GLU 147, /C
GLU 147, /D GLU 147, /E GLU 147, /F GLU 147, /G GLU 147, /H GLU 147
673 hydrogen bonds
/A GLU 147 is not terminus, removing H atom from 'C'
/B GLU 147 is not terminus, removing H atom from 'C'
/C GLU 147 is not terminus, removing H atom from 'C'
/D GLU 147 is not terminus, removing H atom from 'C'
/E GLU 147 is not terminus, removing H atom from 'C'
3 messages similar to the above omitted
7480 hydrogens added
Drag select of 1494 atoms, 1504 bonds
> style sel ball
Changed 1494 atom styles
> select clear
> close session
> open C:\Users\publico\Desktop\1shs.pdb format pdb
1shs.pdb title:
Small heat shock protein from methanococcus jannaschii [more info...]
Chain information for 1shs.pdb #1
---
Chain | Description | UniProt
A B C D E F G H | small heat shock protein | HSPS_METJA
> show cartoons
> hide atoms
> select /A:69
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add /A:70
16 atoms, 14 bonds, 2 residues, 1 model selected
> select add /A:71
24 atoms, 21 bonds, 3 residues, 1 model selected
> select add /A:72
29 atoms, 25 bonds, 4 residues, 1 model selected
> select add /A:73
36 atoms, 31 bonds, 5 residues, 1 model selected
> select add /A:68
44 atoms, 38 bonds, 6 residues, 1 model selected
> select add /A:128
51 atoms, 44 bonds, 7 residues, 1 model selected
> select add /A:129
59 atoms, 51 bonds, 8 residues, 1 model selected
> select add /A:130
65 atoms, 56 bonds, 9 residues, 1 model selected
> select add /A:131
72 atoms, 62 bonds, 10 residues, 1 model selected
> select add /A:132
80 atoms, 69 bonds, 11 residues, 1 model selected
> select add /A:133
88 atoms, 76 bonds, 12 residues, 1 model selected
> select add /A:134
95 atoms, 83 bonds, 13 residues, 1 model selected
> select ~sel
7049 atoms, 7146 bonds, 907 residues, 1 model selected
> hide sel cartoons
Drag select of 13 residues
> style sel ball
Changed 95 atom styles
> hide sel atoms
> show sel atoms
> hide sel cartoons
> addh
Summary of feedback from adding hydrogens to 1shs.pdb #1
---
notes | No usable SEQRES records for 1shs.pdb (#1) chain A; guessing termini
instead
No usable SEQRES records for 1shs.pdb (#1) chain B; guessing termini instead
No usable SEQRES records for 1shs.pdb (#1) chain C; guessing termini instead
No usable SEQRES records for 1shs.pdb (#1) chain D; guessing termini instead
No usable SEQRES records for 1shs.pdb (#1) chain E; guessing termini instead
3 messages similar to the above omitted
Chain-initial residues that are actual N termini: /A THR 33, /B THR 33, /C THR
33, /D THR 33, /E THR 33, /F THR 33, /G THR 33, /H THR 33
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /A GLU 147, /B GLU 147, /C
GLU 147, /D GLU 147, /E GLU 147, /F GLU 147, /G GLU 147, /H GLU 147
673 hydrogen bonds
/A GLU 147 is not terminus, removing H atom from 'C'
/B GLU 147 is not terminus, removing H atom from 'C'
/C GLU 147 is not terminus, removing H atom from 'C'
/D GLU 147 is not terminus, removing H atom from 'C'
/E GLU 147 is not terminus, removing H atom from 'C'
3 messages similar to the above omitted
7480 hydrogens added
> select clear
> ui tool show H-Bonds
> hbonds reveal true
621 hydrogen bonds found
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.13399 Core Profile Forward-Compatible Context 15.201.1151.1008
OpenGL renderer: AMD Radeon HD 8470D
OpenGL vendor: ATI Technologies Inc.
Manufacturer: To Be Filled By O.E.M.
Model: To Be Filled By O.E.M.
OS: Microsoft Windows 11 Pro (Build 22000)
Memory: 7,433,629,696
MaxProcessMemory: 137,438,953,344
CPU: 2 AMD A4-7300 APU with Radeon HD Graphics
OSLanguage: es-ES
Locale: ('es_AR', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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