Timeline
Dec 1, 2021:
- 9:33 PM Ticket #5691 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- fixed: Duplicate of #5579 Thank you for this bug report. I believe the …
- 9:32 PM Ticket #5559 (Blast Protein: wrapped C/C++ object of type QProgressBar has been deleted) closed by
- fixed: I believe that one of …
- 5:18 PM Ticket #5719 (Crash saving PDB of AlphaFold model (also: ErrorPalooza)) closed by
- can't reproduce
- 4:49 PM Ticket #5717 (Qt crash drawing a window) closed by
- can't reproduce: Old version
- 4:33 PM Ticket #5719 (Crash saving PDB of AlphaFold model (also: ErrorPalooza)) created by
- […]
- 2:21 PM Ticket #5718 (Bond-rotation mouse mode: excess atoms) created by
- […]
- 12:46 PM Ticket #5714 (Crash showing AlphaFold model) closed by
- can't reproduce: I tried exactly the same steps on the same uniprot sequence using the …
- 11:37 AM Ticket #5715 (Graphics driver crash, macOS 10.15.7, GeForce GT 750M) closed by
- nonchimerax: Mac graphics driver crash. Using very old (circa 2013) GeForce GT 750 …
- 11:20 AM Ticket #5710 (Crash calculating surface) closed by
- can't reproduce: Crashed (seg fault) in the sharp edge triangle splitting C++ code used …
- 10:55 AM Ticket #5709 (Graphics driver crash, macOS 12.0.1, Intel Iris Plus Graphics 640, VM ...) closed by
- nonchimerax: Mac driver crash.
- 10:53 AM Ticket #5717 (Qt crash drawing a window) created by
- […]
- 10:26 AM Ticket #5716 (Thread crash: Namespace OBJC, Code 0x1) closed by
- can't reproduce: Possibly related to some thread-security enforcement, as per: …
- 10:11 AM Ticket #5713 ('UI' object has no attribute '_bad_drop_events') closed by
- fixed: Hi George, Thanks for reporting this problem. It is fixed in the …
- 9:59 AM Ticket #5711 (Crash in Qt event loop) closed by
- can't reproduce
- 9:04 AM Ticket #5716 (Thread crash: Namespace OBJC, Code 0x1) created by
- […]
- 8:52 AM Ticket #5715 (Graphics driver crash, macOS 10.15.7, GeForce GT 750M) created by
- […]
- 8:48 AM Ticket #5714 (Crash showing AlphaFold model) created by
- […]
- 8:00 AM Ticket #5713 ('UI' object has no attribute '_bad_drop_events') created by
- […]
- 6:29 AM Ticket #5712 (Crash reloading available tool info) created by
- […]
- 6:07 AM Ticket #5711 (Crash in Qt event loop) created by
- […]
- 1:33 AM Ticket #5710 (Crash calculating surface) created by
- […]
Nov 30, 2021:
- 10:48 PM Ticket #5709 (Graphics driver crash, macOS 12.0.1, Intel Iris Plus Graphics 640, VM ...) created by
- […]
- 1:28 PM Ticket #5708 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) closed by
- duplicate: Hi Arnold, This is the same problem that you reported about a month …
- 12:07 PM Ticket #5699 (combine: 'was_deleted' attribute missing) closed by
- fixed: Fix committed for daily build, but not impending 1.3 release
- 11:27 AM Ticket #5708 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) created by
- […]
- 11:14 AM Ticket #5706 (Crash hiding models) closed by
- can't reproduce: Crashed hiding one of two atomic models "hide #1 model" in a molecular …
- 11:02 AM Ticket #5707 (OpenMM: Error compiling program: nvrtc: error: invalid value for ...) created by
- […]
- 10:47 AM Ticket #5705 (Crash initializing AtomicStructures Collection) closed by
- can't reproduce
- 10:45 AM Ticket #5704 (Crash opening mmCIF) closed by
- can't reproduce
- 10:34 AM Ticket #5702 (Crash showing Save dialog) closed by
- can't reproduce
- 6:40 AM Ticket #5706 (Crash hiding models) created by
- […]
- 4:46 AM Ticket #5705 (Crash initializing AtomicStructures Collection) created by
- […]
- 2:36 AM Ticket #5704 (Crash opening mmCIF) created by
- […]
Nov 29, 2021:
- 6:30 PM Ticket #5702 (Crash showing Save dialog) created by
- […]
- 6:01 PM Ticket #5701 ("Remind me later" false on new version check keeps reminding) created by
- […]
- 1:51 PM Ticket #5694 (Build Structure: second chain numbered wrong) closed by
- fixed: Hi Matt, Thanks for reporting this problem. All the residues in the …
- 11:34 AM Ticket #5700 (Crash moving dock widget) closed by
- can't reproduce
- 11:04 AM Ticket #5698 (Unknown crash) closed by
- can't reproduce: Looks like an at-exit crash
- 10:55 AM Ticket #5697 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce: Possibly the same reset-from-session thing, but this ticket has a lot …
- 10:55 AM Ticket #5700 (Crash moving dock widget) created by
- […]
- 10:51 AM Ticket #5696 (Coulombic crash) closed by
- can't reproduce: Hi Ma, Thanks for reporting this problem. I would recommend …
- 10:50 AM Ticket #5693 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- duplicate: Same user reporting same bug as #5692.
- 10:47 AM Ticket #5692 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- nonchimerax
- 10:16 AM Ticket #5689 (Crash calling time.perf_counter()) closed by
- can't reproduce: This ChimeraX crash happened right after the graphics was redrawn. …
- 10:05 AM Ticket #5683 (Graphics crash, macOS 10.15.7, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple graphics driver crash. Unfortunately Apple's graphics drivers …
- 9:46 AM Ticket #5690 (Unknown crash) closed by
- can't reproduce
- 8:47 AM Ticket #5699 (combine: 'was_deleted' attribute missing) created by
- […]
- 6:13 AM Ticket #5698 (Unknown crash) created by
- […]
- 3:51 AM Ticket #5697 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 2:08 AM Ticket #5696 (Coulombic crash) created by
- […] question.txt
- 2:00 AM Ticket #5695 (Crash removing dock widget from main window) created by
- […]
Nov 28, 2021:
- 6:25 PM Ticket #5694 (Build Structure: second chain numbered wrong) created by
- […]
- 12:41 PM Ticket #5693 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
Nov 27, 2021:
- 1:32 AM Ticket #5692 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
Nov 26, 2021:
- 11:09 PM Ticket #5691 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 12:54 PM Ticket #5690 (Unknown crash) created by
- […]
- 10:18 AM Ticket #5688 (Unknown crash) closed by
- can't reproduce
- 9:55 AM Ticket #5685 (Fixing unparameterized residue: cannot unpack non-iterable ...) closed by
- fixed: This will be fixed in the coming release (which was planned for this …
- 9:52 AM Ticket #5686 (Unknown crash) closed by
- can't reproduce
- 6:47 AM Ticket #5689 (Crash calling time.perf_counter()) created by
- […]
- 3:56 AM Ticket #5688 (Unknown crash) created by
- […]
- 2:23 AM Ticket #5687 (AddH: spurious OXT) created by
- […]
Nov 25, 2021:
- 1:25 PM Ticket #5686 (Unknown crash) created by
- […]
- 1:14 PM Ticket #5685 (Fixing unparameterized residue: cannot unpack non-iterable ...) created by
- […]
- 11:49 AM Ticket #5684 (AddH protonation issue) created by
- […]
Nov 24, 2021:
- 11:22 PM Ticket #5683 (Graphics crash, macOS 10.15.7, Intel Iris Graphics 6100) created by
- […]
- 5:22 PM Ticket #5681 (Crash destroying tool) closed by
- can't reproduce
- 2:07 PM Ticket #5312 (Add a trackpad twist speed preference setting) closed by
- fixed: Ok, I added a trackpad twist speed option. Default value is 6, …
- 1:51 PM Ticket #5663 (surface vs. view) closed by
- fixed: Fixed in 1.4, not 1.3. Made "view <spec>" command exclude molecular …
- 1:19 PM Ticket #5682 (Testing stacktraces when molecular surface calculation crashes) closed by
- not a bug: This test does not explain the extra threads seen in #5679 and other …
- 1:13 PM Ticket #5682 (Testing stacktraces when molecular surface calculation crashes) created by
- […]
- 12:09 PM Ticket #5676 (Crash getting cursor position during mouse pause) closed by
- can't reproduce: This crash appears to be from a Qt window toolkit bug. from …
- 11:40 AM Ticket #5674 (Graphics driver crash, macoOS 10.14.6, Intel HD Graphics 6000) closed by
- nonchimerax: Apple graphics crash.
- 11:35 AM Ticket #5667 (ring/atom type "sticky") closed by
- fixed: Okay, have implemented #2. Will investigate #3 when time allows.
- 11:29 AM Ticket #5673 (Crash saving session) closed by
- can't reproduce: This ChimeraX crash we think happens because of a bug in deallocating …
- 11:11 AM Ticket #5681 (Crash destroying tool) created by
- […]
- 11:05 AM Ticket #5648 (Delete alt locs: access violation) closed by
- fixed
- 10:34 AM Ticket #5680 (Unknown crash after MatchMaker completion) closed by
- can't reproduce
- 10:32 AM Ticket #5679 (Unknown crash after MatchMaker completion) closed by
- can't reproduce
- 10:09 AM Ticket #5671 (ISOLDE: All atoms for zone mask must be from a single model) closed by
- fixed: This was happening in situations where Clipper was asked to mask the …
- 10:03 AM Ticket #5678 (Cannot save PDB) closed by
- duplicate
- 9:57 AM Ticket #5677 (Session restore: invalid load key, '\x04') closed by
- duplicate
- 9:53 AM Ticket #5680 (Unknown crash after MatchMaker completion) created by
- […]
- 9:43 AM Ticket #5679 (Unknown crash after MatchMaker completion) created by
- […]
- 8:51 AM Ticket #5678 (Cannot save PDB) created by
- […]
- 7:36 AM Ticket #5677 (Session restore: invalid load key, '\x04') created by
- […]
- 7:31 AM Ticket #5676 (Crash getting cursor position during mouse pause) created by
- […]
- 5:07 AM Ticket #5675 (Problems with links in Sphinx-generated help) created by
- […]
- 3:39 AM Ticket #5674 (Graphics driver crash, macoOS 10.14.6, Intel HD Graphics 6000) created by
- […]
- 3:06 AM Ticket #5673 (Crash saving session) created by
- […]
Nov 23, 2021:
- 11:10 PM 2021-12-2 created by
- 11:08 PM DeveloperMeetings edited by
- (diff)
- 10:42 PM Ticket #5672 (ISOLDE: 'NoneType' object has no attribute 'is_difference_map') created by
- […]
- 8:00 PM Ticket #5671 (ISOLDE: All atoms for zone mask must be from a single model) created by
- […]
- 3:06 PM Ticket #5670 (OpenMM: Error uploading array TabulatedFunction) created by
- The following bug report has been submitted: Platform: …
- 3:00 PM Ticket #5669 (ISOLDE: restrain torsions: Each residue selection must be from a ...) created by
- The following bug report has been submitted: Platform: …
- 2:24 PM Ticket #5668 (Antechamber failure) closed by
- duplicate: Hi Michael, Thanks for reporting this problem. It is fixed in the …
- 9:27 AM Ticket #5668 (Antechamber failure) created by
- […]
- 9:15 AM Ticket #5666 (Error executing custom "read CASTp" script) closed by
- nonchimerax: Tried to read a directory as a regular file
- 9:10 AM Ticket #5665 (Crash fetching pseudobond group's _graphics_changed attribute) closed by
- can't reproduce
- 9:04 AM Ticket #5664 (Unknown QWebEngine crash) closed by
- can't reproduce
- 6:05 AM Ticket #5667 (ring/atom type "sticky") created by
- […]
- 2:16 AM Ticket #5666 (Error executing custom "read CASTp" script) created by
- […]
- 12:18 AM Ticket #5665 (Crash fetching pseudobond group's _graphics_changed attribute) created by
- […]
Nov 22, 2021:
- 6:21 PM Ticket #5664 (Unknown QWebEngine crash) created by
- […]
- 6:14 PM Ticket #5634 (Reading hdf5 files broken on Mac) closed by
- fixed
- 4:38 PM Ticket #5663 (surface vs. view) created by
- I'm not sure you'll regard this as a bug, but if you have one residue …
- 4:23 PM Ticket #5649 (Add charge failure for J8A) closed by
- fixed: Antechamber doesn't like the fact that the atom names are not of the …
- 3:39 PM Ticket #5662 (TypeError: hk_icosahedron_lattice() missing 1 required positional ...) closed by
- fixed: Fixed in 1.3 and 1.4. Adding alpha option to hkcage command broke …
- 3:22 PM Ticket #5662 (TypeError: hk_icosahedron_lattice() missing 1 required positional ...) created by
- […]
- 3:16 PM Ticket #5656 (Failure fetching UniProt sequence/info) closed by
- nonchimerax: It's an obsolete UniProt accession ID. Reported it to the RCSB.
- 12:43 PM Ticket #5661 (Crash deleting atoms) closed by
- duplicate
- 12:39 PM Ticket #5661 (Crash deleting atoms) created by
- […]
- 12:14 PM Ticket #5653 (Dual display crash) closed by
- nonchimerax: Crash in the Qt window toolkit used by ChimeraX. We have seen many of …
- 11:41 AM Ticket #5660 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 11:28 AM Ticket #5659 (Crash deleting atoms) closed by
- duplicate
- 11:24 AM Ticket #5655 (OpenMM: Error launching CUDA compiler: Value 'sm_30' is not defined ...) closed by
- fixed: This will go away as soon as I manage to get ISOLDE 1.3 out the door. …
- 10:54 AM Ticket #5659 (Crash deleting atoms) created by
- […]
- 10:52 AM Ticket #5658 (Crash deleting atoms) closed by
- duplicate
- 10:51 AM Ticket #5657 (Crash deleting atoms) closed by
- can't reproduce: Possibly duplicate.
- 10:46 AM Ticket #5654 (Crash resolving ctypes pointer) closed by
- can't reproduce
- 10:43 AM Ticket #5652 (Crash in matplotlib) closed by
- can't reproduce
- 10:42 AM Ticket #5658 (Crash deleting atoms) created by
- […]
- 10:34 AM Ticket #5651 (Crash saving session including alphafold prediction) closed by
- can't reproduce
- 10:31 AM Ticket #5657 (Crash deleting atoms) created by
- […]
- 10:10 AM Ticket #5656 (Failure fetching UniProt sequence/info) created by
- […]
- 9:59 AM Ticket #5646 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:58 AM Ticket #5645 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:57 AM Ticket #5644 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:55 AM Ticket #5643 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:45 AM Ticket #5642 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate
- 6:35 AM Ticket #5655 (OpenMM: Error launching CUDA compiler: Value 'sm_30' is not defined ...) created by
- […]
- 6:05 AM Ticket #5654 (Crash resolving ctypes pointer) created by
- […]
- 2:40 AM Ticket #5653 (Dual display crash) created by
- […]
Nov 21, 2021:
Nov 20, 2021:
- 11:35 AM Ticket #5651 (Crash saving session including alphafold prediction) created by
- […]
- 8:43 AM Ticket #5650 (Crash starting MatchMaker) created by
- […]
- 8:36 AM Ticket #5649 (Add charge failure for J8A) created by
- […]
- 8:22 AM Ticket #5648 (Delete alt locs: access violation) created by
- […]
Nov 19, 2021:
- 11:47 PM Ticket #5646 (Long atom spec crashes ChimeraX) created by
- […]
- 11:41 PM Ticket #5645 (Long atom spec crashes ChimeraX) created by
- […]
- 11:41 PM Ticket #5644 (Long atom spec crashes ChimeraX) created by
- […]
- 10:56 PM Ticket #5643 (Long atom spec crashes ChimeraX) created by
- […]
- 2:28 PM Ticket #5642 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
- 1:12 PM Ticket #5641 (new bond: map::at: key not found) closed by
- can't reproduce: Would need more info to reproduce. If the atoms being bonded weren't …
- 12:18 PM Ticket #5640 (Failure calling _cpp_modified during atom deletion) closed by
- can't reproduce
- 12:16 PM Ticket #5639 (Crash opening session or getting cursor position) closed by
- can't reproduce
- 12:14 PM Ticket #5638 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 12:13 PM Ticket #5641 (new bond: map::at: key not found) created by
- […]
- 12:13 PM Ticket #5637 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 12:12 PM Ticket #5636 (Delete status bar: wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate
- 12:10 PM Ticket #5619 (Missing ANTECHAMBER library on Windows) closed by
- fixed: Yeah, I have tried a variety of things to get rid of that /tmp …
- 11:14 AM Ticket #5640 (Failure calling _cpp_modified during atom deletion) created by
- […]
- 6:04 AM Ticket #5639 (Crash opening session or getting cursor position) created by
- […]
- 1:31 AM Ticket #5638 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 1:31 AM Ticket #5637 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 12:51 AM Ticket #5636 (Delete status bar: wrapped C/C++ object of type QScreen has been deleted) created by
- […]
Nov 18, 2021:
- 10:54 PM Ticket #5629 (Attempt to retrieve context when no valid context) closed by
- can't reproduce: I see why the traceback does not show frames above draw_new_frame() -- …
- 3:52 PM Ticket #5635 (Windows 8: glBlitFramebuffer: invalid operation) closed by
- limitation
- 3:07 PM Ticket #5635 (Windows 8: glBlitFramebuffer: invalid operation) created by
- […]
- 2:07 PM Dev2021-11-18 created by
- 2:07 PM Dev2021-11-11 edited by
- (diff)
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 1:43 PM Ticket #5625 (Crash drawing scene, Windows, possible graphics driver crash) closed by
- can't reproduce: Possibly a graphics driver crash.
- 1:34 PM Ticket #5630 (ISOLDE: various errors) closed by
- fixed: First error (`RuntimeError: edges should be a n x 2 array of unsigned …
- 1:34 PM Ticket #5624 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- fixed: Thank you for this bug report. I believe the issue was fixed in a …
- 1:12 PM Ticket #5628 (Crash checking if change-tracker changed) closed by
- can't reproduce
- 12:55 PM Ticket #5626 (Crash saving PDB file(?)) closed by
- can't reproduce: Though according to the Windows error log the problem had to do with …
- 12:49 PM Ticket #5634 (Reading hdf5 files broken on Mac) created by
- […]
- 12:38 PM 2021-11-18 edited by
- (diff)
- 12:29 PM Ticket #5623 (rotamers table: 'setVisibile') closed by
- fixed: Hi Doyeon, Thanks for reporting this problem. It was fixed about 5 …
- 11:56 AM Ticket #5633 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 11:55 AM Ticket #5632 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 7:34 AM Ticket #5631 (ISOLDE: fix unparameterized residues: Residue already deleted) created by
- […]
- 7:25 AM Ticket #5630 (ISOLDE: various errors) created by
- […]
- 6:31 AM Ticket #5629 (Attempt to retrieve context when no valid context) created by
- […]
- 6:10 AM Ticket #5628 (Crash checking if change-tracker changed) created by
- […]
- 3:00 AM Ticket #4890 (Have Updates report newer production releases) closed by
- fixed: There is a separate dialog that pops up when there are newer …
- 2:59 AM Ticket #1968 (use ajax to update ChimeraX download page) closed by
- fixed: Switched to using JSON files that are updated by the build tools.
- 2:58 AM Ticket #5500 (stop bothering me) closed by
- fixed: Incorporated suggestions from Elaine and Tom. Kept the ability to …
- 2:14 AM Ticket #5627 (Problem installing matplotlib_venn dependency) created by
- […] matplotlib_venn_installation_error.txt
Nov 17, 2021:
- 11:45 PM Ticket #5626 (Crash saving PDB file(?)) created by
- […]
- 9:22 PM Ticket #5625 (Crash drawing scene, Windows, possible graphics driver crash) created by
- […]
- 7:10 PM Ticket #5624 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 7:04 PM Ticket #5623 (rotamers table: 'setVisibile') created by
- […] Rotamer error 21-11-17 Doyeon Kim.png
- 11:56 AM Ticket #5622 (Make _nonstd_charge() public) closed by
- fixed: Okay, _nonstd_charge() has become nonstd_charge(), its "status" …
- 11:31 AM Ticket #5617 (Morph segmentSieve: empty rList) closed by
- fixed: Fixed in 1.3 and 1.4. User was going the an ATP synthase morph …
- 11:03 AM Ticket #5616 (Crash in numpy saving session after alphafold prediction returned structure) closed by
- can't reproduce: […] This numpy line is just setting a Python attribute, pure …
- 10:58 AM Ticket #5615 (Crash creating QWebEngineProfile) closed by
- nonchimerax: Seems like a Qt bug. Crashed in the Qt constructor. profile = …
- 10:35 AM Ticket #5536 (Duplicate pseudobond depiction) closed by
- fixed: Nucleotides deliberately uses Atom.effective_coord() instead of …
- 10:23 AM Ticket #5618 (Changes trigger before pb group restored(?)) closed by
- can't reproduce: >Hi Eric, > >Unfortunately I don't have that original .cxs file that …
- 9:38 AM Ticket #5621 (Fatal Qt error during app initialization) closed by
- can't reproduce: The app name given in "Path:" in the report seems F'ed up.
- 9:33 AM Ticket #5620 (Crash setting StructureSeq chain_id) closed by
- duplicate
- 8:43 AM Ticket #5622 (Make _nonstd_charge() public) created by
- […]
- 8:17 AM Ticket #5621 (Fatal Qt error during app initialization) created by
- […]
- 7:20 AM Ticket #5620 (Crash setting StructureSeq chain_id) created by
- […]
- 6:48 AM Ticket #5619 (Missing ANTECHAMBER library on Windows) created by
- […]
Nov 16, 2021:
- 11:55 PM Ticket #5618 (Changes trigger before pb group restored(?)) created by
- […]
- 11:39 PM Ticket #5611 (Segger model added to scene twice) closed by
- duplicate: This ChimeraX Segger bug was fixed over a year ago (bug #3778). You …
- 11:32 PM Ticket #5614 (Crash initialing OpenGL, probably while removing external display) closed by
- can't reproduce: Maybe a crash disconnecting an external display -- is in …
- 11:28 PM Ticket #5613 (Crash in PyOpenGL numpy allocation for setting shader matrix) closed by
- can't reproduce: Same crash as #5152 on Mac. Maybe a PyOpenGL bug. Maybe garbage …
- 11:23 PM Ticket #5612 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Drawing a status line message fails. The OpenGL make_current() does …
- 5:02 PM Ticket #5617 (Morph segmentSieve: empty rList) created by
- […]
- 5:00 PM Ticket #5616 (Crash in numpy saving session after alphafold prediction returned structure) created by
- […]
- 4:36 PM Ticket #5615 (Crash creating QWebEngineProfile) created by
- […]
- 1:29 PM ChangeLog edited by
- (diff)
- 1:29 PM ChangeLog edited by
- (diff)
- 8:50 AM Ticket #5614 (Crash initialing OpenGL, probably while removing external display) created by
- […]
- 6:57 AM Ticket #5613 (Crash in PyOpenGL numpy allocation for setting shader matrix) created by
- […]
Nov 15, 2021:
- 9:29 PM Ticket #5612 (glClear: invalid framebuffer operation) created by
- […]
- 5:25 PM ChangeLog edited by
- (diff)
- 5:23 PM Ticket #5424 (Direct model panel editing) closed by
- fixed: Implemented (double click on ID/name to initiate editing). Available …
- 2:38 PM Ticket #5611 (Segger model added to scene twice) created by
- […] RSA_seg.cxs
- 11:48 AM Ticket #5587 (Cannot reshow Distances tool) closed by
- fixed: Hi Kate, Thanks for reporting this problem. I have fixed it now and …
- 11:25 AM Ticket #5593 (Cannot "color byattr" booleans) closed by
- fixed: I have revised the error message to clarify that it needs a numeric …
- 11:15 AM Ticket #5607 (volume step 2: out of graphics memory) closed by
- limitation: Tried to show a size 2800,3750,288 map at step 2 (3 Gvoxels, float32, …
- 10:57 AM Ticket #5579 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- fixed: Should be fixed in …
- 10:56 AM Ticket #5597 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- duplicate: Duplicate of #5579
- 10:45 AM Ticket #5605 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple graphics driver crash.
- 10:42 AM Ticket #5604 (Graphics driver crash, macos 10.15.7, GeForce GT 650M) closed by
- nonchimerax: Apple graphics driver crash.
- 10:27 AM Ticket #5610 (RFE: add Z-translate mouse mode) created by
- On Nov 15, 2021, at 8:20 AM, Pranav Shah <p.shah.lab@…> wrote: …
- 10:24 AM Ticket #5609 (RFE Side View top-viewing option) created by
- From: Oliver Clarke <olibclarke@…> Subject: Re: …
- 10:17 AM Ticket #5608 (RFE improve clipping plane visibility in Side View) created by
- From: Pranav Shah via ChimeraX-users <chimerax-users@…> …
- 9:02 AM Ticket #5606 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) closed by
- duplicate
- 8:44 AM Ticket #5599 (Crash setting StructureSeq chain_id) closed by
- duplicate
- 8:42 AM Ticket #5598 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 6:34 AM Ticket #5607 (volume step 2: out of graphics memory) created by
- […]
Nov 14, 2021:
- 10:51 PM Ticket #5606 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) created by
- […]
- 8:52 AM Ticket #5605 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
Nov 13, 2021:
- 11:38 AM Ticket #5604 (Graphics driver crash, macos 10.15.7, GeForce GT 650M) created by
- […]
- 11:22 AM Ticket #5603 (Log a link to fetch EMDB map when opening a PDB model from cryoEM) created by
- PDB models that have an associated EMDB map list that map in the mmCIF …
- 8:08 AM Ticket #5602 (Cannot save model panel settings) created by
- […]
Nov 12, 2021:
- 5:00 PM 2021-11-18 created by
- 4:56 PM DeveloperMeetings edited by
- (diff)
- 2:56 PM Ticket #5601 (Log templates from mmCIF files for theoretical models) created by
- Ben is interested in being able to show template sequence alignments, …
- 1:30 PM Ticket #5600 (Allow global fitting avoid clashes with some already fit molecules) created by
- Begin forwarded message: From: Oliver Clarke via ChimeraX-users …
- 12:28 PM Ticket #5595 (cartoon undo: 'list' object has no attribute 'ribbon_tether_opacities') closed by
- fixed: This bug in the cartoon tether command was fixed more than a year ago. …
- 12:21 PM Ticket #5591 (Crash creating morph interpolation) closed by
- can't reproduce: User was running morph command in ChimeraX 1.2.5. Python stack trace …
- 12:03 PM Ticket #5586 (Crash in Qt on exit) closed by
- duplicate: Not sure why the Mac crash reports are sometimes in JSON format, but …
- 11:42 AM Ticket #5596 (Modeller comparative: HTTP Error 403: Forbidden) closed by
- can't reproduce
- 11:34 AM Ticket #5594 (Fatal error during app initialization) closed by
- can't reproduce
- 11:31 AM Ticket #5584 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate: Fixed several months ago, soon after 1.2.5 release.
- 11:17 AM Ticket #5592 (Crash showing rapid access at startup) closed by
- duplicate
- 11:14 AM Ticket #5590 (Color editor calling into dead color button) closed by
- duplicate
- 11:13 AM Ticket #5589 (Color editor calling into dead color button) closed by
- duplicate: Hi Dmitry, Thanks for reporting this problem. We believe we fixed it …
- 10:49 AM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) closed by
- can't reproduce
- 10:49 AM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) reopened by
- 10:48 AM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) closed by
- can't reproduce: Well, a tantalizing amount of information, but without the structure …
- 10:45 AM Ticket #5599 (Crash setting StructureSeq chain_id) created by
- […]
- 10:24 AM Ticket #5598 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 10:14 AM Ticket #5597 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 9:23 AM Ticket #5582 (Startup error on Windows 7) closed by
- limitation
- 9:22 AM Ticket #5581 (Modeller: not enough args for format string) closed by
- duplicate: Hi Yen-Li, Thanks for reporting this problem. It was corrected near …
- 9:18 AM Ticket #5580 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 8:51 AM Ticket #5596 (Modeller comparative: HTTP Error 403: Forbidden) created by
- […]
- 8:33 AM Ticket #5595 (cartoon undo: 'list' object has no attribute 'ribbon_tether_opacities') created by
- […]
- 8:17 AM Ticket #5594 (Fatal error during app initialization) created by
- […]
- 7:43 AM Ticket #5593 (Cannot "color byattr" booleans) created by
- […] working session Cas Epitope.cxs
- 4:06 AM Ticket #5592 (Crash showing rapid access at startup) created by
- […]
- 1:48 AM Ticket #5591 (Crash creating morph interpolation) created by
- […]
- 1:31 AM Ticket #5590 (Color editor calling into dead color button) created by
- […]
- 1:30 AM Ticket #5589 (Color editor calling into dead color button) created by
- […]
Nov 11, 2021:
- 5:33 PM Ticket #5588 (Log blank) created by
- […] Bug in resent view and no log shown with pwd.png
- 3:52 PM Ticket #5587 (Cannot reshow Distances tool) created by
- […]
- 3:15 PM Ticket #5586 (Crash in Qt on exit) created by
- […]
- 9:51 AM Ticket #5585 (Problem opening file hyperlinked in Excel in ChimeraX) created by
- […]
- 5:41 AM Ticket #5584 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
Nov 10, 2021:
- 9:58 PM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) created by
- […]
- 9:57 PM Ticket #5582 (Startup error on Windows 7) created by
- […]
- 9:53 PM Ticket #5581 (Modeller: not enough args for format string) created by
- […]
- 8:20 PM Ticket #5580 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 3:06 PM Ticket #5579 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 11:58 AM Ticket #5578 (Run AlphaFold on UCSF Wynton cluster) created by
- Would like to allow ChimeraX to submit AlphaFold jobs to the UCSF …
- 11:48 AM Ticket #5427 (Read EMAN format: cannot load .dylibs/libhdf5.200.dylib) closed by
- fixed: Presumed fixed. Tested on macOS Big Sur but not tested on macOS Catalina.
- 11:46 AM Ticket #5450 (crash taking sqrt()?!?) closed by
- can't reproduce
- 10:16 AM Ticket #5575 (Crash in Qt event loop after changing transparency, access violation) closed by
- can't reproduce: Crashed in the Qt event loop. Probably not related to the last …
- 9:50 AM Ticket #5577 (Crash in set_sseq_chain_id) closed by
- can't reproduce
- 9:00 AM Ticket #5577 (Crash in set_sseq_chain_id) created by
- […]
- 1:19 AM Ticket #5576 (Update coordinates: OpenMM: RuntimeError: Release Object) created by
- […]
Nov 9, 2021:
- 5:35 PM Training edited by
- (diff)
- 12:30 PM Ticket #5575 (Crash in Qt event loop after changing transparency, access violation) created by
- […]
- 12:15 PM Ticket #5572 (Blast results: invalid literal for int() with base 10) closed by
- fixed
- 11:19 AM Ticket #5564 (Build Structure: cannot change rotamer library) closed by
- fixed: Hi Charisma, Thanks for reporting this problem. I have fixed it now …
- 11:18 AM DeveloperMeetings edited by
- (diff)
- 11:16 AM Ticket #5574 (devel install does not replace previous bundle) created by
- The devel install command should replace the existing installed bundle …
- 11:12 AM Ticket #5568 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Graphics driver bug, fails to start, ATI FirePro 2260 gpu (circa 2008).
- 11:10 AM Ticket #5567 (Disconnected screen crash) closed by
- duplicate: This ChimeraX crash is caused by removing an external screen on macOS …
- 11:04 AM Ticket #5566 (Crash in alphafold predict) closed by
- can't reproduce: I see ChimeraX crash sometime after you started an AlphaFold …
- 11:01 AM Ticket #5563 (vseries slider: list index out of range) closed by
- duplicate: Fixed several months ago after 1.2.5 release. User created vseries …
- 10:53 AM Ticket #5562 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) closed by
- duplicate: Fixed several months ago.
- 10:34 AM Ticket #5573 (Crash showing rapid access at startup) closed by
- can't reproduce
- 10:33 AM Ticket #5573 (Crash showing rapid access at startup) created by
- […]
- 9:35 AM Ticket #5572 (Blast results: invalid literal for int() with base 10) created by
- […]
- 8:59 AM Ticket #5571 (Blast: not enough values to unpack) closed by
- duplicate
- 8:55 AM Ticket #5571 (Blast: not enough values to unpack) created by
- […]
- 8:47 AM Ticket #5570 (Crash submitting Blast job) closed by
- can't reproduce
- 8:46 AM Ticket #5569 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- duplicate
- 7:49 AM Ticket #5570 (Crash submitting Blast job) created by
- […]
- 7:18 AM Ticket #5569 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 7:11 AM Ticket #5568 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 7:04 AM Ticket #5567 (Disconnected screen crash) created by
- […]
- 4:58 AM Ticket #5566 (Crash in alphafold predict) created by
- […]
- 3:54 AM Ticket #5565 (Lone '~' expands to ~ribbon) created by
- […]
Nov 8, 2021:
- 11:59 PM Ticket #5561 (include query model name in Blast results window) closed by
- fixed: Should be fixed in …
- 11:11 PM Ticket #5564 (Build Structure: cannot change rotamer library) created by
- […] Screen Shot 2021-11-09 at 16.11.12.png
- 9:14 PM Ticket #5563 (vseries slider: list index out of range) created by
- […]
- 4:55 PM Ticket #5562 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) created by
- […]
- 4:53 PM Ticket #5519 (Out of memory fetching/opening mmCIFs) closed by
- can't reproduce: The exact same set of commands works for me and the Windows Task …
- 4:28 PM Ticket #5540 (Question marks used for gaps instead of dashes) closed by
- fixed: Matchmaker is supposed to rectify those sequences to their normal …
- 10:42 AM Ticket #5558 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 645, ...) closed by
- nonchimerax: Apple graphics driver crash.
- 10:34 AM Ticket #5557 (Crash opening session) closed by
- can't reproduce
- 10:11 AM Ticket #5555 (failed starting of .exe file) closed by
- nonchimerax: Nothing is blocking the download on our end. If you can view the …
- 10:08 AM Ticket #5556 (Crash showing selection on alphafold model (swap buffers?)) closed by
- nonchimerax: It looks like the crash (access violation) was in OpenGL …
- 7:46 AM Ticket #5561 (include query model name in Blast results window) created by
- From: Elaine Meng <meng@…> Date: November 3, 2021 at …
- 7:00 AM Ticket #5560 (Alignment headers somehow being directly saved in sessions) created by
- […]
Nov 7, 2021:
- 8:50 PM Ticket #5559 (Blast Protein: wrapped C/C++ object of type QProgressBar has been deleted) created by
- […]
- 11:34 AM Ticket #5558 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 645, ...) created by
- […]
- 9:42 AM Ticket #5557 (Crash opening session) created by
- […]
- 7:44 AM Ticket #5556 (Crash showing selection on alphafold model (swap buffers?)) created by
- […]
Nov 6, 2021:
- 7:18 PM Ticket #5555 (failed starting of .exe file) created by
- […] failed.docx
- 1:57 AM Ticket #5554 (Crash drawing side view) created by
- […]
- 1:33 AM Ticket #5553 (Version check bug) closed by
- fixed: Remove debug code that got checked in.
Nov 5, 2021:
- 5:14 PM Ticket #5552 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) closed by
- duplicate: This error saving a session is fixed in the current ChimeraX 1.3 …
- 2:42 PM Ticket #5553 (Version check bug) created by
- […]
- 10:09 AM Ticket #5550 (Alphafold match: 'Structure' object has no attribute ...) closed by
- fixed: Fixed in 1.3 and 1.4. When alignment of alphafold model to an …
- 9:45 AM Ticket #5548 (Windows 7 graphics error) closed by
- nonchimerax: ChimeraX does not support Windows 7, only Windows 10 as shown on the …
- 9:43 AM Ticket #5547 (Crash disconnecting screen) closed by
- duplicate: Qt bug fixed in Qt 5.15 used in current ChimeraX. This crash has been …
- 9:37 AM Ticket #5546 (Crash saving session including maps) closed by
- can't reproduce: Looks like it crashed getting the attribute of an atomic structure, …
- 9:13 AM Ticket #5552 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) created by
- […]
- 8:53 AM Ticket #5551 (unhashable type: 'Color') closed by
- duplicate: Hi Juliana, Thanks for reporting this problem. It was fixed in the …
- 8:48 AM Ticket #5549 (Access violation on Windows in Qt event loop) closed by
- can't reproduce
- 8:14 AM Ticket #5545 (Error in toolshed error message) closed by
- duplicate: Hi Matthew, The toolshed is trying to tell you that the Clipper …
- 7:42 AM Ticket #5551 (unhashable type: 'Color') created by
- […]
- 4:07 AM Ticket #5550 (Alphafold match: 'Structure' object has no attribute ...) created by
- […]
- 1:35 AM Ticket #5549 (Access violation on Windows in Qt event loop) created by
- […]
- 1:34 AM Ticket #5548 (Windows 7 graphics error) created by
- […]
- 12:30 AM Ticket #5547 (Crash disconnecting screen) created by
- […]
Nov 4, 2021:
- 10:20 PM Ticket #5546 (Crash saving session including maps) created by
- […]
- 8:27 PM Ticket #5545 (Error in toolshed error message) created by
- […]
- 8:22 PM Ticket #5544 (Allow EMDB fetch command to choose europe/japan/china/us and ftp/https) closed by
- fixed: Added the extra EMDB fetch options in ChimeraX 1.3 and 1.4.
- 8:18 PM Ticket #5544 (Allow EMDB fetch command to choose europe/japan/china/us and ftp/https) created by
- The NIH 3D pipeline would like to fetch EMDB maps from the US mirror …
- 4:38 PM NTTData edited by
- (diff)
- 2:22 PM NTTData edited by
- (diff)
- 2:09 PM NTTData edited by
- (diff)
- 2:07 PM NTTData edited by
- (diff)
- 1:35 PM NTTData edited by
- (diff)
- 12:49 PM 2021-11-4 edited by
- (diff)
- 12:22 PM Ticket #5542 (VR crash in openvr waitGetPoses()) closed by
- can't reproduce: Crash in OpenVR waitGetPoses(). Interesting to see VR use on Linux. …
- 12:09 PM 2021-11-4 edited by
- (diff)
- 12:07 PM 2021-11-4 edited by
- (diff)
- 12:04 PM 2021-11-4 edited by
- (diff)
- 11:48 AM 2021-11-4 edited by
- (diff)
- 11:22 AM 2021-11-4 edited by
- (diff)
- 11:18 AM 2021-11-4 edited by
- (diff)
- 11:17 AM 2021-11-4 edited by
- (diff)
- 11:03 AM Ticket #5543 (VR crash in drawing) closed by
- duplicate
- 11:01 AM Ticket #5541 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) closed by
- can't reproduce
- 10:50 AM Ticket #5543 (VR crash in drawing) created by
- […]
- 10:49 AM Ticket #5542 (VR crash in openvr waitGetPoses()) created by
- […]
- 10:45 AM Ticket #5541 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) created by
- […]
- 10:12 AM Ticket #5539 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) closed by
- can't reproduce
- 10:10 AM Ticket #5538 (Region bound checking using None) closed by
- duplicate
- 9:16 AM Ticket #5540 (Question marks used for gaps instead of dashes) created by
- […] questionmarks.cxs
- 6:31 AM Ticket #5539 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) created by
- […]
Nov 3, 2021:
- 9:55 PM Ticket #5538 (Region bound checking using None) created by
- […] Screen Shot 2021-11-04 at 13.54.19.png
- 5:50 PM Ticket #5537 (Add tool to measure pocket volumes) created by
- Begin forwarded message: From: Elaine Meng Subject: Re: …
- 1:50 PM Ticket #5536 (Duplicate pseudobond depiction) created by
- […] ChimeraX_pbond_bug_report.png
- 1:27 PM Dev2021-11-11 edited by
- (diff)
- 1:27 PM ChangeLog edited by
- (diff)
- 1:25 PM Ticket #5530 (Write GLTF: index 1 is out of bounds for axis 0 with size 1) closed by
- duplicate: Fixed 5 months ago. Ticket #4788
- 1:23 PM Dev2021-11-11 created by
- 1:21 PM DeveloperMeetings edited by
- (diff)
- 1:15 PM Ticket #5534 (Unknown crash) closed by
- can't reproduce: It is puzzling that none of the commands in the log enable clipping. …
- 12:02 PM Ticket #5527 (Atomic structures with all atoms deleted are not closed in Python) closed by
- fixed: I tested out having the structure live on with zero atoms and …
- 10:52 AM Ticket #5532 (Region bound checking using None) closed by
- fixed
- 10:12 AM Ticket #5535 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate: Duplicate of #5207
- 9:58 AM Ticket #5533 (Unknown crash) closed by
- can't reproduce: Hundreds of open-dialog "fatal" errors. The Python log ended open …
- 8:43 AM Ticket #5535 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 8:22 AM Ticket #5534 (Unknown crash) created by
- […]
- 7:11 AM Ticket #5533 (Unknown crash) created by
- […]
- 3:31 AM Ticket #5532 (Region bound checking using None) created by
- […]
- 2:18 AM Ticket #5531 (Problems connecting with Visual Studio Code) created by
- […] pyvsc-run-isolated.py
Nov 2, 2021:
- 11:43 PM Ticket #5529 (Remove lineprofiler from prereqs) closed by
- fixed: Removed prereqs/lineprofiler.
- 11:30 PM Ticket #5530 (Write GLTF: index 1 is out of bounds for axis 0 with size 1) created by
- […]
- 8:08 PM Ticket #5529 (Remove lineprofiler from prereqs) created by
- I think we can git remove the prereqs/lineprofiler directory. It is …
- 7:22 PM Ticket #5528 (Remove pywin32 and wmi dependencies used by bug reporter on Windows) created by
- We've been getting github security warnings about pywin32 in ChimeraX. …
- 3:21 PM Ticket #5527 (Atomic structures with all atoms deleted are not closed in Python) created by
- The atomic structure C++ code deletes the C++ structure automatically …
- 2:59 PM Ticket #5525 (Morph problem) closed by
- fixed: Fixed in ChimeraX 1.3 and 1.4 daily build. Morph code was checking …
- 2:20 PM Training edited by
- (diff)
- 11:46 AM Ticket #5526 (Probably garbage collection crash) closed by
- duplicate
- 11:09 AM Ticket #5524 (Modeller failure) closed by
- fixed: Hi Deepesh, Thanks for reporting this problem. It turns out that our …
- 10:45 AM Ticket #5526 (Probably garbage collection crash) created by
- […]
- 10:20 AM Ticket #5525 (Morph problem) created by
- […]
- 10:08 AM Ticket #5523 (Unknown crash) closed by
- can't reproduce
- 9:42 AM 2021-11-4 created by
- 9:41 AM DeveloperMeetings edited by
- (diff)
- 9:35 AM Ticket #5524 (Modeller failure) created by
- […]
- 2:39 AM Ticket #5523 (Unknown crash) created by
- […]
Nov 1, 2021:
- 10:26 PM Ticket #5522 (Clashes syntax error) created by
- […]
- 4:59 PM Ticket #5520 (Unknown crash with unformatted stack trace) closed by
- can't reproduce: Thanks for the report. The crash stack trace gives no indication of …
- 11:57 AM Ticket #5518 (Graphics crash, macOS 10.15, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple graphics driver crash.
- 11:43 AM Ticket #5514 (volume erase: out of memory) closed by
- duplicate: OpenGL out of memory, duplicate of #5384, error message has been …
- 10:54 AM Ticket #5521 (Add Charge: bad hydrogen name) closed by
- duplicate
- 10:38 AM Ticket #5516 (Unknown crash) closed by
- can't reproduce
- 10:18 AM Ticket #5515 (Qt crash during exit) closed by
- can't reproduce
- 10:15 AM Ticket #5513 (Crash clicking close button of dock widget) closed by
- can't reproduce
- 10:12 AM Ticket #5512 (Download page incorrect in Chrome) closed by
- fixed
- 10:09 AM Ticket #5511 (Assertion failed: (backingScaleFactor > 0.f), function ...) closed by
- can't reproduce: Seems to be a problem with dragging/dropping a color from/to the color …
- 9:52 AM Ticket #5521 (Add Charge: bad hydrogen name) created by
- […]
- 8:02 AM Ticket #5520 (Unknown crash with unformatted stack trace) created by
- […]
Note:
See TracTimeline
for information about the timeline view.