The following bug report has been submitted:
Platform: Windows-8.1-6.3.9600
ChimeraX Version: 1.4.dev202111181350 (2021-11-18 13:50:17 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.4.dev202111181350 (2021-11-18)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "G:\Work\TPC2\i003 - SG094-2 default\1.cxs" format session
Opened cryosparc_P71_J86_006_volume_map_sharp_local-USE_ME.mrc as #1, grid
size 300,300,300, pixel 0.829, shown at level 0.14, step 1, values float32
Log from Thu Nov 18 23:01:03 2021 Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.4.dev202111181350 (2021-11-18)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "G:/Work/TPC2/i003 - SG094-2
> default/cryosparc_P71_J86_006_volume_map_sharp_local-USE_ME.mrc"
Opened cryosparc_P71_J86_006_volume_map_sharp_local-USE_ME.mrc as #1, grid
size 300,300,300, pixel 0.829, shown at level 0.0706, step 2, values float32
> open "G:/Work/TPC2/i003 - SG094-2 default/TPC2_094-2-New_07_renamed-
> coot-0.pdb"
Chain information for TPC2_094-2-New_07_renamed-coot-0.pdb #2
---
Chain | Description
A | No description available
B | No description available
> volume #1 step 1
> volume #1 level 0.14
> lighting soft
> set bgColor white
> select /A
5409 atoms, 5554 bonds, 2 pseudobonds, 653 residues, 2 models selected
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.
GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glBlitFramebuffer,
cArguments = (
0,
0,
2103,
1458,
0,
0,
2103,
1458,
256,
GL_NEAREST,
)
)
Traceback (most recent call last):
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\view.py", line 165, in draw
self._draw_scene(camera, drawings)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\view.py", line 237, in _draw_scene
r.outline.set_outline_mask() # copy depth to outline framebuffer
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 1839, in set_outline_mask
cfb.copy_to_framebuffer(mfb, color=False)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2279, in copy_to_framebuffer
GL.glBlitFramebuffer(0, 0, w, h, 0, 0, w, h, what, GL.GL_NEAREST)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\OpenGL\platform\baseplatform.py", line 415, in __call__
return self( *args, **named )
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glBlitFramebuffer,
cArguments = (
0,
0,
2103,
1458,
0,
0,
2103,
1458,
256,
GL_NEAREST,
)
)
> select #2
10634 atoms, 10917 bonds, 6 pseudobonds, 1280 residues, 2 models selected
> view #2 clip false
> hide #!2 models
> show #!2 models
> select /A
5409 atoms, 5554 bonds, 2 pseudobonds, 653 residues, 2 models selected
> select /B
5225 atoms, 5362 bonds, 4 pseudobonds, 627 residues, 2 models selected
> select /A
5409 atoms, 5554 bonds, 2 pseudobonds, 653 residues, 2 models selected
> ui tool show "Color Actions"
> color sel pale green
> select /A
5409 atoms, 5554 bonds, 2 pseudobonds, 653 residues, 2 models selected
> color sel pale green
> select /B
5225 atoms, 5362 bonds, 4 pseudobonds, 627 residues, 2 models selected
> color sel light blue
> set bgColor black
> set bgColor white
> save "G:/Work/TPC2/i003 - SG094-2 default/1.cxs"
——— End of log from Thu Nov 18 23:01:03 2021 ———
opened ChimeraX session
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.
GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glBlitFramebuffer,
cArguments = (
0,
0,
2103,
1458,
0,
0,
2103,
1458,
256,
GL_NEAREST,
)
)
Traceback (most recent call last):
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\view.py", line 165, in draw
self._draw_scene(camera, drawings)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\view.py", line 237, in _draw_scene
r.outline.set_outline_mask() # copy depth to outline framebuffer
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 1839, in set_outline_mask
cfb.copy_to_framebuffer(mfb, color=False)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2279, in copy_to_framebuffer
GL.glBlitFramebuffer(0, 0, w, h, 0, 0, w, h, what, GL.GL_NEAREST)
File "G:\Programs\ChimeraX 1.4.dev202111181350\bin\lib\site-
packages\OpenGL\platform\baseplatform.py", line 415, in __call__
return self( *args, **named )
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glBlitFramebuffer,
cArguments = (
0,
0,
2103,
1458,
0,
0,
2103,
1458,
256,
GL_NEAREST,
)
)
OpenGL version: 3.3.12618 Core Profile Forward-Compatible Context 13.251.9001.1001
OpenGL renderer: AMD Radeon R9 200 Series
OpenGL vendor: ATI Technologies Inc.
Manufacturer: Gigabyte Technology Co., Ltd.
Model: H97M-D3H
OS: Microsoft Windows 8.1 (Build 9600)
Memory: 8,481,976,320
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-4790 CPU @ 3.60GHz
OSLanguage: en-GB
Locale: ('en_AU', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.2
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.1.7
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202111181350
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.4
ChimeraX-ModelPanel: 1.3.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.14
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.2
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Windows 8 not supported. Only Windows 10.