Opened 4 years ago

Closed 4 years ago

Last modified 4 years ago

#5719 closed defect (can't reproduce)

Crash saving PDB of AlphaFold model (also: ErrorPalooza)

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.3rc202112010754 (2021-12-01 07:54:47 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e

8001010e

Thread 0x00001a48 (most recent call first):
Windows fatal exception:   File "C:\Program FilesWindows fatal exception: code 0x8001010e

\CWindows fatal exception: code 0xcode 0x8001010e

Windows fatal exception: Windows fatal exception: Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

hWindows fatal exception: icode 0xm8001010ecode 0x8001010e8001010e

eWindows fatal exception: 



Windows fatal exception: Windows fatal exception: raXcode 0x8001010ecode 0x8001010ecode 0x8001010e

 1.3rWindows fatal exception: ccode 0x28001010e0

211

2Windows fatal exception: 0code 0x18001010eWindows fatal exception: 

code 0x8001010e

Windows fatal exception: code 0x8001010eWindows fatal exception: 

code 0x8001010e

Windows fatal exception: code 0x8001010eWindows fatal exception: 

code 0x8001010e

Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x

8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: 0Windows fatal exception: code 0x7code 0x8001010e8001010e5



4\Windows fatal exception: bcode 0xi8001010en

\liWindows fatal exception: bcode 0x\8001010em

ulWindows fatal exception: tcode 0xi8001010ep

rocWindows fatal exception: ecode 0xs8001010escode 0x

8001010e

iWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010en

g

Windows fatal exception: \Windows fatal exception: code 0xpcode 0xo8001010eo

l8001010eWindows fatal exception: 

code 0x8001010e.

pyWindows fatal exception: "code 0x, line 8001010e576

 in _Windows fatal exception: hcode 0xa8001010en

dleWindows fatal exception: _code 0xr8001010ee

sulWindows fatal exception: tcode 0xs8001010e


Windows fatal exception: code 0x8001010e

  File "Windows fatal exception: Ccode 0x:8001010e\

ProWindows fatal exception: gcode 0xr8001010ea

m FWindows fatal exception: icode 0xl8001010ee

s\Ch

imeraWindows fatal exception: Xcode 0x 8001010e1

.3rcWindows fatal exception: 2code 0x08001010e2

112Windows fatal exception: 0code 0x18001010e0

754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program FWindows fatal exception: icode 0xl8001010ee

s\ChWindows fatal exception: icode 0xm8001010ee

raXWindows fatal exception:  code 0x18001010e.

3rcWindows fatal exception: 2code 0x08001010e2

11Windows fatal exception: 2code 0x08001010e1

07Windows fatal exception: 5code 0x48001010e\

Windows fatal exception: Windows fatal exception: bWindows fatal exception: icode 0xn8001010e\

lcode 0xiWindows fatal exception: bcode 0x\8001010ecode 0x

8001010emuWindows fatal exception: lcode 0xt8001010ei

pr8001010eoWindows fatal exception: ccode 0x

e8001010es

Windows fatal exception: sWindows fatal exception: icode 0xn

gcode 0x\8001010epWindows fatal exception: 

ocode 0xo8001010el

.p8001010eyWindows fatal exception: 

"code 0xWindows fatal exception: , line 8001010e528

code 0x in 8001010e_

hWindows fatal exception: acode 0xn8001010ed

Windows fatal exception: lcode 0xeWindows fatal exception: 8001010ecode 0x

_8001010eWindows fatal exception: tcode 0xa8001010es

ksWindows fatal exception: 
code 0x  File 8001010e"

C:Windows fatal exception: Windows fatal exception: \code 0xPcode 0x8001010er

og8001010erWindows fatal exception: a

m

 Windows fatal exception: FWindows fatal exception: code 0xcode 0x8001010e8001010ei

lcode 0xeWindows fatal exception: scode 0x\8001010eC

8001010ehWindows fatal exception: icode 0xm8001010e

e

raWindows fatal exception: Windows fatal exception: Xcode 0x 8001010e1



.Windows fatal exception: 3code 0xr8001010ec

2Windows fatal exception: Windows fatal exception: 0code 0x28001010e1

12Windows fatal exception: 0code 0x18001010e0

7code 0xWindows fatal exception: 8001010ecode 0x58001010e4code 0x

\8001010eWindows fatal exception: 

code 0xb8001010e

inWindows fatal exception: \

lWindows fatal exception: iWindows fatal exception: bcode 0x\Windows fatal exception: tcode 0xh8001010er

e8001010eaWindows fatal exception: d

code 0xi8001010enWindows fatal exception: 

code 0x8001010egWindows fatal exception: .code 0xp8001010ey

"

Windows fatal exception: code 0xcode 0x8001010e, line Windows fatal exception: 910code 0x in 8001010e

r

uWindows fatal exception: ncode 0x
Windows fatal exception:   File code 0x8001010e"

Ccode 0x:8001010e\

Windows fatal exception: Pcode 0xr8001010eo

grWindows fatal exception: aWindows fatal exception: mcode 0x 8001010e8001010e



code 0xWindows fatal exception: 8001010ecode 0x

8001010e8001010e



Windows fatal exception: Windows fatal exception: code 0xcode 0xWindows fatal exception: 8001010e8001010e



Windows fatal exception: FWindows fatal exception: iWindows fatal exception: code 0xcode 0x8001010e8001010e



code 0xWindows fatal exception: l8001010ee

sWindows fatal exception: \code 0xC8001010eh

icode 0xWindows fatal exception: mcode 0x8001010e8001010e



erWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: Windows fatal exception: .code 0xcode 0x38001010e8001010er

c

2Windows fatal exception: 0code 0x28001010e1

1code 0x28001010eWindows fatal exception: 0

code 0x18001010e0

Windows fatal exception: 7Windows fatal exception: 5code 0x48001010e\code 0x

8001010ebWindows fatal exception: icode 0xnWindows fatal exception: 8001010e\

liWindows fatal exception: bcode 0x\8001010et

h

rWindows fatal exception: ecode 0xa8001010ed

inWindows fatal exception: gcode 0xWindows fatal exception: 8001010ecode 0x

8001010e.

Windows fatal exception: code 0xWindows fatal exception: code 0xcode 0x8001010e8001010e

p

y", line 9738001010e in 

_boWindows fatal exception: ocode 0xWindows fatal exception: tcode 0xs8001010et8001010e



rapWindows fatal exception: _code 0xi8001010en

nerWindows fatal exception: 
code 0x  File 8001010e"

C:\Windows fatal exception: Pcode 0xr8001010eo

graWindows fatal exception: mcode 0x 8001010eF

ileWindows fatal exception: scode 0x\8001010eC

himWindows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

rc2Windows fatal exception: 0code 0x28001010e1

120Windows fatal exception: 1code 0x08001010e7

54\Windows fatal exception: bcode 0xi8001010en

\lib\threading.pyWindows fatal exception: "code 0x, line 8001010e930

 in _bWindows fatal exception: ocode 0xo8001010et

strWindows fatal exception: acode 0xp8001010e



Thread 0x000009e0Windows fatal exception:  (most recent call first):
code 0x8001010e  File 

"C:Windows fatal exception: \code 0xP8001010er

ogrWindows fatal exception: acode 0xm8001010e 

FilWindows fatal exception: ecode 0xs8001010e\

ChiWindows fatal exception: mcode 0xe8001010er

aX Windows fatal exception: 1code 0x.8001010e3

rc2Windows fatal exception: 0code 0x28001010e1

120Windows fatal exception: 1code 0x08001010e7

54\bin\lib\mulWindows fatal exception: tcode 0xi8001010ep

rocWindows fatal exception: ecode 0xs8001010es

ingWindows fatal exception: \code 0xc8001010eo

nneWindows fatal exception: ccode 0xt8001010ei

on.Windows fatal exception: pcode 0xy8001010e"

, line 816 in Windows fatal exception: _code 0xe8001010ex

hauWindows fatal exception: scode 0xt8001010ei

ve_Windows fatal exception: wcode 0xa8001010ei

t
Windows fatal exception:   File code 0x"C:\Program Files\ChimeraX 18001010e.

3rc2021Windows fatal exception: 1code 0x28001010e0

1075Windows fatal exception: 4code 0x\8001010eb

in\lib\multiprocessing\connecWindows fatal exception: code 0xt8001010eio

n.pyWindows fatal exception: "code 0x, line 884 in 8001010ew

ait
Windows fatal exception: code 0x8001010e

Windows fatal exception:   File code 0x"C:\Program 8001010eF

iles\Windows fatal exception: Ccode 0xh8001010ei

meraX Windows fatal exception: code 0x1.8001010e3r

c202Windows fatal exception: 1code 0x18001010e2

010Windows fatal exception: 7code 0x58001010e4

\biWindows fatal exception: ncode 0x\8001010el

ib\Windows fatal exception: mcode 0xu8001010el

tipWindows fatal exception: code 0x8001010e

rocessinWindows fatal exception: gcode 0x\8001010ep

oolWindows fatal exception: .code 0xp8001010ey

", line Windows fatal exception: 499code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x in 8001010e_

waWindows fatal exception: icode 0xt8001010e_

foWindows fatal exception: rcode 0x_8001010eu

pdaWindows fatal exception: tcode 0xe8001010es


Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x  File 8001010e"

C:\Program FWindows fatal exception: icode 0xl8001010ee

s\ChWindows fatal exception: icode 0xm8001010ee

raXWindows fatal exception:  code 0x18001010e.

3rcWindows fatal exception: 2code 0x08001010e2

112Windows fatal exception: 0code 0x18001010e0

754Windows fatal exception: \code 0xb8001010ei

n\Windows fatal exception: lcode 0xi8001010eb

\mWindows fatal exception: ucode 0xl8001010et

iprWindows fatal exception: ocode 0xc8001010ee

ssiWindows fatal exception: ncode 0xg8001010e\

pooWindows fatal exception: lcode 0x.8001010ep

y", line 519 in _handle_woWindows fatal exception: rcode 0xk8001010ee

rs
Windows fatal exception:   File code 0x"8001010eC

:\PWindows fatal exception: rcode 0xo8001010eg

ramWindows fatal exception:  code 0xF8001010eil

es\Windows fatal exception: Ccode 0xh8001010ei

meWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010erc

202Windows fatal exception: 1code 0x18001010e2

01Windows fatal exception: 0code 0x78001010e5

4\Windows fatal exception: bcode 0xi8001010en

\lWindows fatal exception: icode 0xb8001010e\

threading.py"Windows fatal exception: , line code 0x9108001010e in 

ruWindows fatal exception: ncode 0x
8001010e  File 

"CWindows fatal exception: :code 0x\8001010eP

roWindows fatal exception: gcode 0xr8001010eam

 FilWindows fatal exception: escode 0x\8001010eC

himWindows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

rc2Windows fatal exception: 0code 0x28001010e1

120Windows fatal exception: 1code 0x08001010e7

54Windows fatal exception: \code 0xb8001010ei

n\Windows fatal exception: lcode 0xi8001010eb

\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001dcc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000009e0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000182c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000026c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000007d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000005ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\orderedset.py", line 42 in __iter__
Windows fatal exception: access violation

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x

8001010e

Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x

8001010e

Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x

8001010e

Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010e



Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x

8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

===== Log before crash start =====
Startup Messages  
---  
warning | Your computer has Intel graphics driver 7323 with a known bug that
causes all Qt user interface panels to be blank. ChimeraX can partially fix
this but may make some panel titlebars and edges black. Hopefully newer Intel
graphics drivers will fix this.  
notes | available bundle cache has not been initialized yet  
Updating list of available bundles failed: [WinError 10013] An attempt was
made to access a socket in a way forbidden by its access permissions  
  
UCSF ChimeraX version: 1.3rc202112010754 (2021-12-01)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connection.py", line 174, in _new_conn  
conn = connection.create_connection(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\util\connection.py", line 96, in create_connection  
raise err  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\util\connection.py", line 86, in create_connection  
sock.connect(sa)  
OSError: [WinError 10013] An attempt was made to access a socket in a way
forbidden by its access permissions  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 699, in urlopen  
httplib_response = self._make_request(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 394, in _make_request  
conn.request(method, url, **httplib_request_kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connection.py", line 239, in request  
super(HTTPConnection, self).request(method, url, body=body, headers=headers)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\http\client.py",
line 1257, in request  
self._send_request(method, url, body, headers, encode_chunked)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\http\client.py",
line 1303, in _send_request  
self.endheaders(body, encode_chunked=encode_chunked)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\http\client.py",
line 1252, in endheaders  
self._send_output(message_body, encode_chunked=encode_chunked)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\http\client.py",
line 1012, in _send_output  
self.send(msg)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\http\client.py",
line 952, in send  
self.connect()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connection.py", line 205, in connect  
conn = self._new_conn()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connection.py", line 186, in _new_conn  
raise NewConnectionError(  
urllib3.exceptions.NewConnectionError: : Failed to establish a new connection: [WinError
10013] An attempt was made to access a socket in a way forbidden by its access
permissions  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\chimerax\ui\gui.py", line 676, in customEvent  
func(*args, **kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1502, in on_finish  
versions = self.result.get()  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 771, in get  
raise self._value  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 125, in worker  
result = (True, func(*args, **kwds))  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 148, in __call_api  
response_data = self.request(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 338, in request  
return self.rest_client.GET(url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 233, in GET  
return self.request("GET", url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 206, in request  
r = self.pool_manager.request(method, url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 74, in request  
return self.request_encode_url(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 96, in request_encode_url  
return self.urlopen(method, url, **extra_kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\poolmanager.py", line 375, in urlopen  
response = conn.urlopen(method, u.request_uri, **kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen  
return self.urlopen(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen  
return self.urlopen(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen  
return self.urlopen(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 755, in urlopen  
retries = retries.increment(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\util\retry.py", line 574, in increment  
raise MaxRetryError(_pool, url, error or ResponseError(cause))  
urllib3.exceptions.MaxRetryError:
HTTPConnectionPool(host='webservices.rbvi.ucsf.edu', port=80): Max retries
exceeded with url:
/cxservices/api/v1//chimerax/newer?uuid=ed63c892-7f76-5ac7-b41e-90b17c66809d&OS=windows&OSVersion=10.0.19043&ChimeraXVersion=1.3rc202112010754
(Caused by NewConnectionError(': Failed to establish a new connection: [WinError 10013] An
attempt was made to access a socket in a way forbidden by its access
permissions'))  
  
urllib3.exceptions.MaxRetryError:
HTTPConnectionPool(host='webservices.rbvi.ucsf.edu', port=80): Max retries
exceeded with url:
/cxservices/api/v1//chimerax/newer?uuid=ed63c892-7f76-5ac7-b41e-90b17c66809d&OS=windows&OSVersion=10.0.19043&ChimeraXVersion=1.3rc202112010754
(Caused by NewConnectionError(': Failed to establish a new connection:
[WinError 10013] An attempt was made to access a socket in a way forbidden by
its access permissions'))  
  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\util\retry.py", line 574, in increment  
raise MaxRetryError(_pool, url, error or ResponseError(cause))  
  
See log for complete Python traceback.  
  
\--- Logging error ---  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\logging\\__init__.py", line 1086, in emit  
stream.write(msg + self.terminator)  
AttributeError: 'NoneType' object has no attribute 'write'  
Call stack:  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
930, in _bootstrap  
self._bootstrap_inner()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
973, in _bootstrap_inner  
self.run()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
910, in run  
self._target(*self._args, **self._kwargs)  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 125, in worker  
result = (True, func(*args, **kwds))  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 148, in __call_api  
response_data = self.request(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 338, in request  
return self.rest_client.GET(url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 233, in GET  
return self.request("GET", url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 206, in request  
r = self.pool_manager.request(method, url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 74, in request  
return self.request_encode_url(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 96, in request_encode_url  
return self.urlopen(method, url, **extra_kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\poolmanager.py", line 375, in urlopen  
response = conn.urlopen(method, u.request_uri, **kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 780, in urlopen  
log.warning(  
Message: "Retrying (%r) after connection broken by '%r': %s"  
Arguments: (Retry(total=2, connect=None, read=None, redirect=None,
status=None), NewConnectionError(': Failed to establish a new connection: [WinError 10013] An
attempt was made to access a socket in a way forbidden by its access
permissions'),
'/cxservices/api/v1//chimerax/newer?uuid=ed63c892-7f76-5ac7-b41e-90b17c66809d&OS=windows&OSVersion=10.0.19043&ChimeraXVersion=1.3rc202112010754')  
\--- Logging error ---  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\logging\\__init__.py", line 1086, in emit  
stream.write(msg + self.terminator)  
AttributeError: 'NoneType' object has no attribute 'write'  
Call stack:  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
930, in _bootstrap  
self._bootstrap_inner()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
973, in _bootstrap_inner  
self.run()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
910, in run  
self._target(*self._args, **self._kwargs)  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 125, in worker  
result = (True, func(*args, **kwds))  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 148, in __call_api  
response_data = self.request(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 338, in request  
return self.rest_client.GET(url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 233, in GET  
return self.request("GET", url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 206, in request  
r = self.pool_manager.request(method, url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 74, in request  
return self.request_encode_url(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 96, in request_encode_url  
return self.urlopen(method, url, **extra_kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\poolmanager.py", line 375, in urlopen  
response = conn.urlopen(method, u.request_uri, **kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen  
return self.urlopen(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 780, in urlopen  
log.warning(  
Message: "Retrying (%r) after connection broken by '%r': %s"  
Arguments: (Retry(total=1, connect=None, read=None, redirect=None,
status=None), NewConnectionError(': Failed to establish a new connection: [WinError 10013] An
attempt was made to access a socket in a way forbidden by its access
permissions'),
'/cxservices/api/v1//chimerax/newer?uuid=ed63c892-7f76-5ac7-b41e-90b17c66809d&OS=windows&OSVersion=10.0.19043&ChimeraXVersion=1.3rc202112010754')  
\--- Logging error ---  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\logging\\__init__.py", line 1086, in emit  
stream.write(msg + self.terminator)  
AttributeError: 'NoneType' object has no attribute 'write'  
Call stack:  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
930, in _bootstrap  
self._bootstrap_inner()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
973, in _bootstrap_inner  
self.run()  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\threading.py", line
910, in run  
self._target(*self._args, **self._kwargs)  
File "C:\Program Files\ChimeraX
1.3rc202112010754\bin\lib\multiprocessing\pool.py", line 125, in worker  
result = (True, func(*args, **kwds))  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 148, in __call_api  
response_data = self.request(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\api_client.py", line 338, in request  
return self.rest_client.GET(url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 233, in GET  
return self.request("GET", url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\cxservices\rest.py", line 206, in request  
r = self.pool_manager.request(method, url,  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 74, in request  
return self.request_encode_url(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\request.py", line 96, in request_encode_url  
return self.urlopen(method, url, **extra_kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\poolmanager.py", line 375, in urlopen  
response = conn.urlopen(method, u.request_uri, **kw)  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen  
return self.urlopen(  
File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-
packages\urllib3\connectionpool.py", line 780, in urlopen  
log.warning(  
Message: "Retrying (%r) after connection broken by '%r': %s"  
Arguments: (Retry(total=0, connect=None, read=None, redirect=None,
status=None), NewConnectionError(': Failed to establish a new connection: [WinError 10013] An
attempt was made to access a socket in a way forbidden by its access
permissions'),
'/cxservices/api/v1//chimerax/newer?uuid=ed63c892-7f76-5ac7-b41e-90b17c66809d&OS=windows&OSVersion=10.0.19043&ChimeraXVersion=1.3rc202112010754')  

> ui tool show AlphaFold

> ui tool show "Show Sequence Viewer"

> ui tool show "Blast Protein"

> alphafold match
> MGYKKIKFGDDARKSLAIGVNILADAVKTTLGPKGRNVILDKSFNSPLVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQTIVNEGIKAVISGINPMDLKRGIDKTIYQAVLELKKISIPCVDTLSISQVGTISANGETIIGKIISDAMNRVGKNGVITVDEGRGFEDELEVVEGMQFDRGYISPYFISNQENMSSILENCLILITDKKISNVRDIVNILELISKKNKSLFIIAEDIEGEALATLVINNIRGVLKILAVKAPGFGDRRKEILKDISILTGSTLISEELGIKLENIDLSLLGFAKKITSTKENTIILGGGGDENSIKKRINTIKKQISESLSDYDKEKLQERMAKLAGGVAVIRVGSATEIEMKEKKARIEDALHSTRAAVEEGVVIGGGVSLIRILNKLKNLQGDNEDQNYGIQIALKALEAPLRQIVKNSGGEPSIVLNNIKSSSNNFGYDASTGKYGDMFKMGIIDPVKVTRSALQSAGSIGGLLITTEAMIADYSDEKSV

Fetching compressed AlphaFold P0A6F5 from
https://alphafold.ebi.ac.uk/files/AF-P0A6F5-F1-model_v1.cif  
1 AlphaFold model found using sequence similarity searches: P0A6F5 (1
sequences)  
Sequence Similarity  
---  
AlphaFold Model| Query Sequence| Identity %| Coverage %  
CH60_ECOLI | MGYKK...DEKSV | 64.0 | 100.0  
Opened 1 AlphaFold model  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> close session

> ui tool show AlphaFold

> alphafold predict
> MGYKKIKFGDDARKSLAIGVNILADAVKTTLGPKGRNVILDKSFNSPLVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQTIVNEGIKAVISGINPMDLKRGIDKTIYQAVLELKKISIPCVDTLSISQVGTISANGETIIGKIISDAMNRVGKNGVITVDEGRGFEDELEVVEGMQFDRGYISPYFISNQENMSSILENCLILITDKKISNVRDIVNILELISKKNKSLFIIAEDIEGEALATLVINNIRGVLKILAVKAPGFGDRRKEILKDISILTGSTLISEELGIKLENIDLSLLGFAKKITSTKENTIILGGGGDENSIKKRINTIKKQISESLSDYDKEKLQERMAKLAGGVAVIRVGSATEIEMKEKKARIEDALHSTRAAVEEGVVIGGGVSLIRILNKLKNLQGDNEDQNYGIQIALKALEAPLRQIVKNSGGEPSIVLNNIKSSSNNFGYDASTGKYGDMFKMGIIDPVKVTRSALQSAGSIGGLLITTEAMIADYSDEKSV

Running AlphaFold prediction  
| Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
  
AlphaFold prediction finished  
Results in C:\Users\akshay/Downloads\ChimeraX\AlphaFold\prediction_1  

> save C:/Users/akshay/Desktop/Q05FT9.pdb relModel #1


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | Your computer has Intel graphics driver 7323 with a known bug that
causes all Qt user interface panels to be blank. ChimeraX can partially fix
this but may make some panel titlebars and edges black. Hopefully newer Intel
graphics drivers will fix this.  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.3rc202112010754 (2021-12-01)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 26.20.100.7323
OpenGL renderer: Intel(R) HD Graphics 620
OpenGL vendor: Intel
Manufacturer: LENOVO
Model: 81F5
OS: Microsoft Windows 10 Pro (Build 19043)
Memory: 4,199,780,352
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i3-7020U CPU @ 2.30GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.8
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3rc202112010754
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 4 years ago

Cc: Tom Goddard added
Component: UnassignedInput/Output
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionCrash saving PDB of AlphaFold model (also: ErrorPalooza)

comment:2 by pett, 4 years ago

Resolution: can't reproduce
Status: acceptedclosed

comment:3 by Tom Goddard, 4 years ago

The faulthandler error was

Thread 0x000005ac (most recent call first):

File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\orderedset.py", line 42 in iter

Windows fatal exception: access violation

Since we don't seem to get full tracebacks on access violations on Windows and in fact the one line may not even indicate correctly where in the code it was, it is rare to get any useful info out of Windows crash reports. The log shows the last command was saving a PDB. But other GUI interactions may have caused the crash without logging a command.

Seems like we need faulthandler on Windows to actually give a traceback on access violation for it to be useful.

Note: See TracTickets for help on using tickets.