![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5695 closed defect (can't reproduce)
Crash removing dock widget from main window
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | Greg Couch, Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3rc202111250017 (2021-11-25 00:17:48 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000113474e00 (most recent call first):
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2285 in destroy
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2156 in _destroy
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 787 in remove_tool
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 353 in remove_tool
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py", line 154 in delete
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py", line 292 in reset_state
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/session.py", line 535 in reset
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/session.py", line 691 in restore
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/session.py", line 995 in open
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core_formats/__init__.py", line 26 in open
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 403 in remember_data_format
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 433 in collated_open
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 181 in provider_open
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2856 in run
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 118 in cmd_open
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2856 in run
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/run.py", line 36 in run
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/dialog.py", line 155 in _qt_safe
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Users/luisbenaventalbarracin/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [5892]
Path: /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [5892]
User ID: 501
Date/Time: 2021-11-28 23:41:26.260 +0100
OS Version: macOS 11.6 (20G165)
Report Version: 12
Anonymous UUID: 83726824-4201-4293-5983-57782F76421C
Sleep/Wake UUID: ED824FCC-CE4E-4FB5-8EC4-521D3E16D097
Time Awake Since Boot: 50000 seconds
Time Since Wake: 1500 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000051e156a62148
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x51e156a62148:
VM_ALLOCATE 163128000-163cd0000 [ 11.7M] rw-/rwx SM=PRV
-->
MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2037892e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff203a75bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff2028bbd5 raise + 26
3 libsystem_platform.dylib 0x00007fff203ecd7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWidgets 0x0000000113613741 QMainWindow::removeDockWidget(QDockWidget*) + 33
6 QtWidgets.abi3.so 0x0000000112cf729f meth_QMainWindow_removeDockWidget(_object*, _object*) + 95
7 org.python.python 0x000000010701f06d cfunction_call + 125
8 org.python.python 0x0000000106fe017d _PyObject_MakeTpCall + 365
9 org.python.python 0x00000001070b861c call_function + 876
10 org.python.python 0x00000001070b5ab3 _PyEval_EvalFrameDefault + 25219
11 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
12 org.python.python 0x00000001070b858c call_function + 732
13 org.python.python 0x00000001070b5a92 _PyEval_EvalFrameDefault + 25186
14 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
15 org.python.python 0x00000001070b858c call_function + 732
16 org.python.python 0x00000001070b5a92 _PyEval_EvalFrameDefault + 25186
17 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
18 org.python.python 0x0000000106fe298a method_vectorcall + 202
19 org.python.python 0x00000001070b858c call_function + 732
20 org.python.python 0x00000001070b5ab3 _PyEval_EvalFrameDefault + 25219
21 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
22 org.python.python 0x0000000106fe298a method_vectorcall + 202
23 org.python.python 0x00000001070b858c call_function + 732
24 org.python.python 0x00000001070b5ab3 _PyEval_EvalFrameDefault + 25219
25 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
26 org.python.python 0x00000001070b858c call_function + 732
27 org.python.python 0x00000001070b5a92 _PyEval_EvalFrameDefault + 25186
28 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
29 org.python.python 0x00000001070b858c call_function + 732
30 org.python.python 0x00000001070b5ab3 _PyEval_EvalFrameDefault + 25219
31 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
32 org.python.python 0x00000001070b858c call_function + 732
33 org.python.python 0x00000001070b5a92 _PyEval_EvalFrameDefault + 25186
34 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
35 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
36 org.python.python 0x0000000106fe298a method_vectorcall + 202
37 org.python.python 0x00000001070b858c call_function + 732
38 org.python.python 0x00000001070b5be1 _PyEval_EvalFrameDefault + 25521
39 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
40 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
41 org.python.python 0x00000001070b61c3 _PyEval_EvalFrameDefault + 27027
42 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
43 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
44 org.python.python 0x0000000106fe2a79 method_vectorcall + 441
45 org.python.python 0x00000001070b61c3 _PyEval_EvalFrameDefault + 27027
46 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
47 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
48 org.python.python 0x00000001070b858c call_function + 732
49 org.python.python 0x00000001070b5b4b _PyEval_EvalFrameDefault + 25371
50 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
51 org.python.python 0x00000001070b858c call_function + 732
52 org.python.python 0x00000001070b5b4b _PyEval_EvalFrameDefault + 25371
53 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
54 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
55 org.python.python 0x0000000106fe0572 PyVectorcall_Call + 162
56 org.python.python 0x00000001070b61c3 _PyEval_EvalFrameDefault + 27027
57 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
58 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
59 org.python.python 0x0000000106fe298a method_vectorcall + 202
60 org.python.python 0x00000001070b858c call_function + 732
61 org.python.python 0x00000001070b5be1 _PyEval_EvalFrameDefault + 25521
62 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
63 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
64 org.python.python 0x0000000106fe0572 PyVectorcall_Call + 162
65 org.python.python 0x00000001070b61c3 _PyEval_EvalFrameDefault + 27027
66 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
67 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
68 org.python.python 0x0000000106fe298a method_vectorcall + 202
69 org.python.python 0x00000001070b858c call_function + 732
70 org.python.python 0x00000001070b5be1 _PyEval_EvalFrameDefault + 25521
71 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
72 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
73 org.python.python 0x00000001070b858c call_function + 732
74 org.python.python 0x00000001070b5b4b _PyEval_EvalFrameDefault + 25371
75 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
76 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
77 QtCore.abi3.so 0x0000000110385957 PyQtSlot::call(_object*, _object*) const + 39
78 QtCore.abi3.so 0x0000000110385866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
79 QtCore.abi3.so 0x0000000110386455 PyQtSlotProxy::unislot(void**) + 85
80 QtCore.abi3.so 0x00000001103863ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
81 QtCore 0x0000000110761b9f QObject::event(QEvent*) + 943
82 QtWidgets 0x00000001134c59ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
83 QtWidgets 0x00000001134c6e11 QApplication::notify(QObject*, QEvent*) + 497
84 QtWidgets.abi3.so 0x0000000112c82db9 sipQApplication::notify(QObject*, QEvent*) + 233
85 QtCore 0x0000000110736a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
86 QtCore 0x0000000110737d79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
87 libqcocoa.dylib 0x00000001215c9259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
88 libqcocoa.dylib 0x00000001215c99c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
89 com.apple.CoreFoundation 0x00007fff2049f2bc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
90 com.apple.CoreFoundation 0x00007fff2049f224 __CFRunLoopDoSource0 + 180
91 com.apple.CoreFoundation 0x00007fff2049efa4 __CFRunLoopDoSources0 + 242
92 com.apple.CoreFoundation 0x00007fff2049d9cc __CFRunLoopRun + 893
93 com.apple.CoreFoundation 0x00007fff2049cf8c CFRunLoopRunSpecific + 563
94 com.apple.HIToolbox 0x00007fff286e51f3 RunCurrentEventLoopInMode + 292
95 com.apple.HIToolbox 0x00007fff286e4f55 ReceiveNextEventCommon + 587
96 com.apple.HIToolbox 0x00007fff286e4cf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
97 com.apple.AppKit 0x00007fff22ca6172 _DPSNextEvent + 864
98 com.apple.AppKit 0x00007fff22ca4945 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
99 com.apple.AppKit 0x00007fff22c96c69 -[NSApplication run] + 586
100 libqcocoa.dylib 0x00000001215c862f QCocoaEventDispatcher::processEvents(QFlags) + 2495
101 QtCore 0x0000000110732acf QEventLoop::exec(QFlags) + 431
102 QtCore 0x0000000110737042 QCoreApplication::exec() + 130
103 QtWidgets.abi3.so 0x0000000112d74702 meth_QApplication_exec_(_object*, _object*) + 82
104 org.python.python 0x000000010701f06d cfunction_call + 125
105 org.python.python 0x0000000106fe017d _PyObject_MakeTpCall + 365
106 org.python.python 0x00000001070b861c call_function + 876
107 org.python.python 0x00000001070b5ab3 _PyEval_EvalFrameDefault + 25219
108 org.python.python 0x0000000106fe0948 function_code_fastcall + 104
109 org.python.python 0x0000000106fe298a method_vectorcall + 202
110 org.python.python 0x00000001070b858c call_function + 732
111 org.python.python 0x00000001070b5ab3 _PyEval_EvalFrameDefault + 25219
112 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
113 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
114 org.python.python 0x00000001070b858c call_function + 732
115 org.python.python 0x00000001070b5b4b _PyEval_EvalFrameDefault + 25371
116 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
117 org.python.python 0x00000001070af70b PyEval_EvalCode + 139
118 org.python.python 0x00000001070ac592 builtin_exec + 626
119 org.python.python 0x000000010701e86a cfunction_vectorcall_FASTCALL + 218
120 org.python.python 0x00000001070b858c call_function + 732
121 org.python.python 0x00000001070b5b4b _PyEval_EvalFrameDefault + 25371
122 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
123 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
124 org.python.python 0x00000001070b858c call_function + 732
125 org.python.python 0x00000001070b5b4b _PyEval_EvalFrameDefault + 25371
126 org.python.python 0x00000001070b9283 _PyEval_EvalCode + 2611
127 org.python.python 0x0000000106fe08d1 _PyFunction_Vectorcall + 289
128 org.python.python 0x000000010711ee20 pymain_run_module + 208
129 org.python.python 0x000000010711e537 Py_RunMain + 1431
130 org.python.python 0x000000010711eb3f pymain_main + 223
131 org.python.python 0x000000010711ea4b Py_Main + 43
132 edu.ucsf.cgl.ChimeraX 0x0000000106f9adc8 main + 120
133 libdyld.dylib 0x00007fff203c2f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20374cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203a7e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x0000000107c6aa9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff2037b1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116fd6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116fd6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116f6aa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116f74778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000116f75150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000116f74c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2037b1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116fd6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116fd6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011aea3f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ef41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20374cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203a7e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000116fc3e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011827b5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116ef420f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2037b1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116fd6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116fd6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ef41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116ef420f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ef41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116f7476a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000116f75150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000116f74d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 13:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ef41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ef41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2049f49f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2049db7f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff2049cf8c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22e2c23a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116f7476a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000116f74e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x0000000116f74c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 17:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116f74778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000116f75150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000116f74cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116fcc2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ef41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 19:: CacheThread_BlockFile
0 libsystem_kernel.dylib 0x00007fff2037b1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116fd6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116fd6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116f5f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116f237cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116f7ea7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 20:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203722ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2037262c mach_msg + 60
2 QtWebEngineCore 0x0000000116fcc492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116f74778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000116f75150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000116f74cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000116fc7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203a3443 thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 29:
0 libsystem_pthread.dylib 0x00007fff203a3420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000113474e00 rcx: 0x00007fa44f155a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007fa44f155a80 rsp: 0x00007fa44f155a58
r8: 0x00007fa44f155f48 r9: 0x6f3a4c8502236899 r10: 0x0000000113474e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007fa44d706c30 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2037892e rfl: 0x0000000000000246 cr2: 0x00007fa44f378500
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
4c 3e ff 41 8d 54 14 ff-48 c1 e2 20 48 09 ca 48 L>.A.T..H.. H..H
83 c4 18 5b 41 5c 41 5d-41 5e 41 5f 5d c3 0f 1f ...[A\A]A^A_]...
84 00 00 00 00 00 55 48-89 e5 41 57 41 56 53 50 ......UH..AWAVSP
49 89 f6 48 89 fb 48 8b-03 45 31 ff 31 f6 eb 0f I..H..H..E1.1...
66 0f 1f 44 00 00 48 8b-03 48 89 df 44 89 fe ff f..D..H..H..D...
90 98 00 00 00 48 85 c0-74 44 48 8b 08 48 89 c7 .....H..tDH..H..
[ff]51 68 4c 39 f0 74 0e-41 ff c7 eb d9 66 0f 1f .QhL9.t.A....f.. /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/MacOS/ChimeraX
0x106fa4000 - 0x107208fff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x10736d000 - 0x10736ffff +_heapq.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x107377000 - 0x10737bfff +binascii.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x107385000 - 0x10738afff +zlib.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x107394000 - 0x107396fff +_bz2.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x10739f000 - 0x1073d0fff +_lzma.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x1073df000 - 0x1073e0fff +grp.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x1073e9000 - 0x1073eefff +_struct.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x1073fb000 - 0x107403fff +math.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x10740f000 - 0x107410fff +_bisect.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x107418000 - 0x107419fff +_random.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x107422000 - 0x107426fff +_sha512.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x10742f000 - 0x107434fff +_json.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x10743e000 - 0x1077f9fff +_multiarray_umath.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x107932000 - 0x10b4e5fff +libopenblas.0.dylib (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas.0.dylib
0x10b782000 - 0x10b899fff +libgfortran.3.dylib (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x10b907000 - 0x10b93dfff +libquadmath.0.dylib (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10b951000 - 0x10b966fff +libgcc_s.1.dylib (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x10d976000 - 0x10d985fff +_datetime.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x10d996000 - 0x10d9adfff +_pickle.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x10d9be000 - 0x10d9cdfff +_multiarray_tests.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x10d9e6000 - 0x10d9e8fff +_posixsubprocess.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x10d9f1000 - 0x10d9f5fff +select.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x10d9ff000 - 0x10da10fff +_ctypes.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x10da27000 - 0x10da2afff +lapack_lite.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/lapack_lite.cpython-39-darwin.so
0x10da37000 - 0x10da52fff +_umath_linalg.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x10da6b000 - 0x10da7efff +_pocketfft_internal.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x10da8a000 - 0x10dafdfff +mtrand.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x10db60000 - 0x10db7ffff +bit_generator.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x10dba2000 - 0x10dbd5fff +_common.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x10dbf3000 - 0x10dbf9fff +_hashlib.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x10dc07000 - 0x10dc5ffff +libssl.1.1.dylib (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
0x10dc8e000 - 0x10dea4fff +libcrypto.1.1.dylib (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib
0x10df42000 - 0x10df48fff +_blake2.cpython-39-darwin.so (0) /Users/USER/Desktop/ChimeraX-1.3-rc2021.11.25.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
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0x7fff3d55f000 - 0x7fff3d6cefff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d6cf000 - 0x7fff3d92afff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d92b000 - 0x7fff3da41fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3da42000 - 0x7fff3da53fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e076000 - 0x7fff3e0d8fff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e0d9000 - 0x7fff3e0fefff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e2dd000 - 0x7fff3e349fff com.apple.Safari.Core (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e34a000 - 0x7fff3e4acfff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e4ad000 - 0x7fff3e78efff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e7ba000 - 0x7fff3e8e6fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e8e7000 - 0x7fff3ed87fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ed88000 - 0x7fff3ee70fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fbb7000 - 0x7fff3fc34fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40dcf000 - 0x7fff40dd2fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff411f7000 - 0x7fff41215fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43723000 - 0x7fff43782fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43783000 - 0x7fff4379cfff com.apple.SafariFoundation (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff4379d000 - 0x7fff437a3fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff437a4000 - 0x7fff43a17fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44280000 - 0x7fff44284fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45bfb000 - 0x7fff45bfefff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff462ea000 - 0x7fff462f5fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47920000 - 0x7fff47960fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff481ae000 - 0x7fff481c9fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff51596000 - 0x7fff515c3fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff515c4000 - 0x7fff515defff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff515df000 - 0x7fff5167efff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff5186e000 - 0x7fff51871fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53f06000 - 0x7fff53f3cfff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55533000 - 0x7fff55536fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff61be2000 - 0x7fff61cc0fff com.apple.driver.AppleIntelBDWGraphicsMTLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelBDWGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelBDWGraphicsMTLDriver
0x7fff636d1000 - 0x7fff63bd8fff com.apple.driver.AppleIntelBDWGraphicsGLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelBDWGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelBDWGraphicsGLDriver
0x7fff6962f000 - 0x7fff69633fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6ba7a000 - 0x7fff6ba80fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6ba81000 - 0x7fff6ba85fff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6ba86000 - 0x7fff6ba95fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6ba96000 - 0x7fff6ba98fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6ba99000 - 0x7fff6baa1fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6baa2000 - 0x7fff6bad5fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bad6000 - 0x7fff6bb12fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bb13000 - 0x7fff6bca6fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bca7000 - 0x7fff6bcb1fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bcb2000 - 0x7fff6be2ffff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6be30000 - 0x7fff6be58fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d0f1000 - 0x7fff6d149fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e1f3000 - 0x7fff6e1fafff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e1fb000 - 0x7fff6e2e2fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f864000 - 0x7fff6f876fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73b74000 - 0x7fff73b7ffff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73d95000 - 0x7fff73dadfff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77925000 - 0x7fff7792cfff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 2880K 6
CG image 660K 35
CG raster data 388K 1
CoreAnimation 1108K 27
CoreGraphics 12K 2
CoreUI image data 4648K 37
Foundation 56K 2
Kernel Alloc Once 8K 1
MALLOC 764.1M 583
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
Mach message 32K 4
OpenGL GLSL 384K 5
STACK GUARD 116K 29
Stack 157.7M 30
Stack Guard 56.0M 1
VM_ALLOCATE 90.2M 115
__DATA 30.9M 596
__DATA_CONST 23.4M 284
__DATA_DIRTY 1290K 184
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 591.7M 145
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 574.0M 577
__UNICODE 588K 1
mapped file 606.4M 76
shared memory 3088K 27
=========== ======= =======
TOTAL 2.9G 2784
TOTAL, minus reserved VM space 2.9G 2784
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202111250017 (2021-11-25)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show AlphaFold
> alphafold predict
> VLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGAVGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNL
Running AlphaFold prediction
> ui tool show "Model Loops"
> ui tool show "Modeller Comparative"
> open "/Users/luisbenaventalbarracin/Desktop/Modelos Blender/modelado canal
> de sodio drosophila melanogaster/AF-P35500-F1-model_v1.pdb" format pdb
AF-P35500-F1-model_v1.pdb title:
Alphafold V2.0 prediction for sodium channel protein para (P35500) [more
info...]
Chain information for AF-P35500-F1-model_v1.pdb #1
---
Chain | Description | UniProt
A | sodium channel protein para | SCNA_DROME
> lighting full
> lighting soft
> lighting simple
> lighting full
Alignment identifier is 1/A
> select /A:1-2
15 atoms, 14 bonds, 2 residues, 1 model selected
> select /A:1-28
232 atoms, 234 bonds, 28 residues, 1 model selected
> select all
16842 atoms, 17231 bonds, 2131 residues, 1 model selected
> rainbow sel
> select /A:2
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:1-2
15 atoms, 14 bonds, 2 residues, 1 model selected
> select / A:238-257
154 atoms, 155 bonds, 20 residues, 1 model selected
> select / A:123-321
1583 atoms, 1621 bonds, 199 residues, 1 model selected
> 423-512
Unknown command: 423-512
> select / A:929-967
301 atoms, 306 bonds, 39 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> open "/Users/luisbenaventalbarracin/Desktop/Modelos Blender/modelado canal
> de sodio drosophila melanogaster/vgsccolored.cxs"
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111250017 (2021-11-25)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.2
OpenGL renderer: Intel(R) Iris(TM) Graphics 6100
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro12,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2,7 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 427.140.8.0.0
SMC Version (system): 2.28f7
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 15 minutes
Graphics/Displays:
Intel Iris Graphics 6100:
Chipset Model: Intel Iris Graphics 6100
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x162b
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.8
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111250017
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (6)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Sessions |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Session reset somehow resulting in deletion of already-destroyed tool |
comment:2 by , 4 years ago
comment:3 by , 4 years ago
The _Qt.destroy() method checks at the top if it has already been destroyed with "if not self.tool_window". If removeDockWidget() crashes when given an already deleted widget, might want to also test if the window is deleted using the Qt shim method Qt.qt_object_is_deleted() to avoid the crash.
comment:4 by , 4 years ago
| Component: | Sessions → UI |
|---|---|
| Summary: | Session reset somehow resulting in deletion of already-destroyed tool → Session removing dock widget from main window |
I don't think it's necessarily true that the dock widget has already been destroyed. A lot of Qt operations are done with the widget (testAttribute() and isFloating() calls) just before the one that crashes (removeDockWidget()).
comment:5 by , 4 years ago
| Summary: | Session removing dock widget from main window → Crash removing dock widget from main window |
|---|
comment:6 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Probably need to review the UI code to try to see if there's some way a tool's windows could get destroyed without the tool's delete() method getting called.