Opened 4 years ago
Closed 4 years ago
#5676 closed defect (can't reproduce)
Crash getting cursor position during mouse pause
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | General Controls | Version: | |
Keywords: | Cc: | pett | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3rc202111240110 (2021-11-24 01:10:40 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000002002b8e00 (most recent call first): File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py", line 514 in _cursor_position File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py", line 472 in mouse_pause_tracking File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code File "/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main Process: ChimeraX [11247] Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.2.5 (1.2.5.0) Code Type: X86-64 (Translated) Parent Process: ??? [1] Responsible: ChimeraX [11247] User ID: 502 Date/Time: 2021-11-24 16:26:34.115 +0100 OS Version: macOS 11.6.1 (20G224) Report Version: 12 Anonymous UUID: 14D735B6-6836-1D3F-D3B2-CF98CDEE5E77 Time Awake Since Boot: 7800 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_MEMORY_ERROR at 0x000000014707e020 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x14707e020: shared memory 146f2c000-146f34000 [ 32K] r--/r-- SM=SHM --> mapped file 146f34000-1470a3000 [ 1468K] r-x/rwx SM=COW Object_id=28270bc7 mapped file 1470a3000-1470bb000 [ 96K] rw-/rwx SM=COW Object_id=2724dcc7 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f792e __pthread_kill + 10 2 libsystem_c.dylib 0x00007fff2030abd5 raise + 26 3 libsystem_platform.dylib 0x00007fff2046bd7d _sigtramp + 29 4 select.cpython-38-darwin.so 000000000000000000 0 + 0 5 ??? 0x0000600000de65f0 ??? Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x00007ffdffbe2a28 0x7ffdffbde000 + 18984 1 runtime 0x00007ffdffbe7eec 0x7ffdffbde000 + 40684 2 runtime 0x00007ffdffbe92c0 0x7ffdffbde000 + 45760 Thread 2: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 3: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 4: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 5: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 6: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 7: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 8: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 9: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 10: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 11: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 12: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 13: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 14: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 15: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 16: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 17: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 18:: ThreadPoolServiceThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203fa1d2 kevent64 + 10 2 ??? 0x000000012a59dcc7 ??? 3 ??? 0x000000012a52662b ??? 4 ??? 0x000000012a4ea7cb ??? 5 ??? 0x000000012a531a94 ??? 6 ??? 0x000000012a545a7d ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 19:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 20:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53be3d ??? 5 ??? 0x000000012a53bc44 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 21:: Chrome_IOThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203fa1d2 kevent64 + 10 2 ??? 0x000000012a59dcc7 ??? 3 ??? 0x000000012a52662b ??? 4 ??? 0x000000012a4ea7cb ??? 5 ??? 0x000000012e46af06 ??? 6 ??? 0x000000012a545a7d ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 22:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 23:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 24:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 25:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 26:: CompositorTileWorker1 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000012a58ae18 ??? 3 ??? 0x000000012b8425f8 ??? 4 ??? 0x000000012a58ee07 ??? 5 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 27:: Chrome_InProcGpuThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a4bb20f ??? 4 ??? 0x000000012a52662b ??? 5 ??? 0x000000012a4ea7cb ??? 6 ??? 0x000000012a545a7d ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 28:: Chrome_ChildIOThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203fa1d2 kevent64 + 10 2 ??? 0x000000012a59dcc7 ??? 3 ??? 0x000000012a52662b ??? 4 ??? 0x000000012a4ea7cb ??? 5 ??? 0x000000012a545a7d ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 29: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 30:: VizCompositorThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 31:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 32:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 33:: ThreadPoolSingleThreadForegroundBlocking0 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a53b76a ??? 5 ??? 0x000000012a53c150 ??? 6 ??? 0x000000012a53bd34 ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 34:: MemoryInfra 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 35: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 36: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 37:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 38: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 39: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 40: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 41: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 42:: com.apple.NSEventThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 com.apple.CoreFoundation 0x00007fff2051f215 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2051d8cb __CFRunLoopRun + 1332 4 com.apple.CoreFoundation 0x00007fff2051ccd0 CFRunLoopRunSpecific + 567 5 ??? 0x00007fff22dd623a ??? 6 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 43: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 44: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 45:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a53b76a ??? 5 ??? 0x000000012a53be3d ??? 6 ??? 0x000000012a53bc74 ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000002002b8e00 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0x70185516b724f0d3 rsi: 0x0000000148af5088 rbp: 0x70185516b724f0d3 rsp: 0x0000000148af5088 r8: 0x000000000000000a r9: 0x70185516b724f0d3 r10: 0x00000002002b8e00 r11: 0x00007fff2030abbb r12: 0x0000000000000103 r13: 0x0000000000000003 r14: 0x000000000000000a r15: 0x0000000000000016 rip: rfl: 0x0000000000000283 Binary Images: 0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so 0x1080ea000 - 0x108139fff +libRosettaRuntime (203.58) /Library/Apple/*/libRosettaRuntime 0x2001e1000 - 0x20027cfff dyld (852.2) /usr/lib/dyld 0x7ffdffbde000 - 0x7ffdffc0dfff runtime (203.58) /usr/libexec/rosetta/runtime 0x7fff2015e000 - 0x7fff2015ffff libsystem_blocks.dylib (79) /usr/lib/system/libsystem_blocks.dylib 0x7fff20160000 - 0x7fff20195fff libxpc.dylib (2038.120.1) /usr/lib/system/libxpc.dylib 0x7fff20196000 - 0x7fff201adfff libsystem_trace.dylib (1277.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff201ae000 - 0x7fff2024bfff libcorecrypto.dylib (1000.140.4) /usr/lib/system/libcorecrypto.dylib 0x7fff2024c000 - 0x7fff20278fff libsystem_malloc.dylib (317.140.5) /usr/lib/system/libsystem_malloc.dylib 0x7fff20279000 - 0x7fff202bdfff libdispatch.dylib (1271.120.2) /usr/lib/system/libdispatch.dylib 0x7fff202be000 - 0x7fff202f7fff libobjc.A.dylib (824) /usr/lib/libobjc.A.dylib 0x7fff202f8000 - 0x7fff202fafff libsystem_featureflags.dylib (28.60.1) /usr/lib/system/libsystem_featureflags.dylib 0x7fff202fb000 - 0x7fff20383fff libsystem_c.dylib (1439.141.1) /usr/lib/system/libsystem_c.dylib 0x7fff20384000 - 0x7fff203d9fff libc++.1.dylib (905.6) /usr/lib/libc++.1.dylib 0x7fff203da000 - 0x7fff203effff libc++abi.dylib (905.6) /usr/lib/libc++abi.dylib 0x7fff203f0000 - 0x7fff2041ffff libsystem_kernel.dylib (7195.141.8) /usr/lib/system/libsystem_kernel.dylib 0x7fff20420000 - 0x7fff2042bfff libsystem_pthread.dylib (454.120.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff2042c000 - 0x7fff20467fff libdyld.dylib (852.2) /usr/lib/system/libdyld.dylib 0x7fff20468000 - 0x7fff20471fff libsystem_platform.dylib (254.80.2) /usr/lib/system/libsystem_platform.dylib 0x7fff20472000 - 0x7fff2049dfff libsystem_info.dylib (542.40.3) /usr/lib/system/libsystem_info.dylib 0x7fff2049e000 - 0x7fff2093cfff com.apple.CoreFoundation (6.9 - 1778.101) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x7fff22538000 - 0x7fff22797fff libicucore.A.dylib (66112) /usr/lib/libicucore.A.dylib 0x7fff22798000 - 0x7fff227a1fff libsystem_darwin.dylib (1439.141.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff22bb7000 - 0x7fff22bc2fff libsystem_notify.dylib (279.40.4) /usr/lib/system/libsystem_notify.dylib 0x7fff24b4f000 - 0x7fff24b5dfff libsystem_networkextension.dylib (1295.140.3) /usr/lib/system/libsystem_networkextension.dylib 0x7fff24bbc000 - 0x7fff24bd2fff libsystem_asl.dylib (385) /usr/lib/system/libsystem_asl.dylib 0x7fff262ce000 - 0x7fff262d5fff libsystem_symptoms.dylib (1431.140.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff285e1000 - 0x7fff285f1fff libsystem_containermanager.dylib (318.100.4) /usr/lib/system/libsystem_containermanager.dylib 0x7fff292f9000 - 0x7fff292fcfff libsystem_configuration.dylib (1109.140.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff292fd000 - 0x7fff29301fff libsystem_sandbox.dylib (1441.141.4) /usr/lib/system/libsystem_sandbox.dylib 0x7fff29f01000 - 0x7fff29f03fff libquarantine.dylib (119.40.2) /usr/lib/system/libquarantine.dylib 0x7fff2a49f000 - 0x7fff2a4abfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff2a4ac000 - 0x7fff2a4b0fff libsystem_coreservices.dylib (127.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff2a6ad000 - 0x7fff2a6bffff libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff2a6c0000 - 0x7fff2a70bfff libsystem_m.dylib (3186.100.3) /usr/lib/system/libsystem_m.dylib 0x7fff2a70d000 - 0x7fff2a712fff libmacho.dylib (980) /usr/lib/system/libmacho.dylib 0x7fff2a72f000 - 0x7fff2a73afff libcommonCrypto.dylib (60178.120.3) /usr/lib/system/libcommonCrypto.dylib 0x7fff2a73b000 - 0x7fff2a745fff libunwind.dylib (201) /usr/lib/system/libunwind.dylib 0x7fff2a746000 - 0x7fff2a74dfff liboah.dylib (203.58) /usr/lib/liboah.dylib 0x7fff2a74e000 - 0x7fff2a758fff libcopyfile.dylib (173.40.2) /usr/lib/system/libcopyfile.dylib 0x7fff2a759000 - 0x7fff2a760fff libcompiler_rt.dylib (102.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff2a761000 - 0x7fff2a763fff libsystem_collections.dylib (1439.141.1) /usr/lib/system/libsystem_collections.dylib 0x7fff2a764000 - 0x7fff2a766fff libsystem_secinit.dylib (87.60.1) /usr/lib/system/libsystem_secinit.dylib 0x7fff2a767000 - 0x7fff2a769fff libremovefile.dylib (49.120.1) /usr/lib/system/libremovefile.dylib 0x7fff2a76a000 - 0x7fff2a76afff libkeymgr.dylib (31) /usr/lib/system/libkeymgr.dylib 0x7fff2a76b000 - 0x7fff2a772fff libsystem_dnssd.dylib (1310.140.1) /usr/lib/system/libsystem_dnssd.dylib 0x7fff2a773000 - 0x7fff2a778fff libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff2a779000 - 0x7fff2a77afff libSystem.B.dylib (1292.120.1) /usr/lib/libSystem.B.dylib 0x7fff2a77b000 - 0x7fff2a77efff libfakelink.dylib (3) /usr/lib/libfakelink.dylib 0x7fff2a77f000 - 0x7fff2a77ffff com.apple.SoftLinking (1.0 - 1) /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking 0x7fff2dcd2000 - 0x7fff2dcd2fff liblaunch.dylib (2038.120.1) /usr/lib/system/liblaunch.dylib 0x7fff30169000 - 0x7fff30169fff libsystem_product_info_filter.dylib (8.40.1) /usr/lib/system/libsystem_product_info_filter.dylib Translated Code Information: tmp0: 0xffffffffffffffff tmp1: 0x00007ffe946568c8 tmp2: 0x00007fff203f7924 External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=517.9M resident=0K(0%) swapped_out_or_unallocated=517.9M(100%) Writable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 256K 2 Activity Tracing 256K 1 CG image 80K 8 CoreAnimation 48K 8 CoreGraphics 16K 3 CoreUI image data 1432K 10 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 404.2M 78 MALLOC guard page 192K 8 MALLOC_MEDIUM (reserved) 728.0M 7 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 24K 6 OpenGL GLSL 256K 3 Rosetta Arena 4096K 2 Rosetta Generic 1576K 391 Rosetta IndirectBranch 1024K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 780K 78 Rosetta Thread Context 780K 78 STACK GUARD 44K 11 Stack 165.2M 45 Stack Guard 56.1M 34 VM_ALLOCATE 98.3M 185 VM_ALLOCATE (reserved) 384.1M 14 reserved VM address space (unallocated) __DATA 532K 52 __DATA_CONST 2984K 40 __DATA_DIRTY 95K 24 __LINKEDIT 505.4M 7 __OBJC_RO 70.3M 1 __OBJC_RW 2480K 2 __TEXT 12.5M 51 __UNICODE 588K 1 dylib 2360K 36 dylib (reserved) 100K 9 reserved VM address space (unallocated) mapped file 5.4G 1086 shared memory 920K 39 unshared pmap 10.2M 6 =========== ======= ======= TOTAL 8.3G 2331 TOTAL, minus reserved VM space 6.8G 2331 Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.3rc202111240110 (2021-11-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 71.7.1 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 11.6.1 (20G224) Kernel Version: Darwin 20.6.0 Time since boot: 2:15 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: U3277WB: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Color LCD: Resolution: 2880 x 1800 UI Looks like: 1440 x 900 @ 60.00Hz Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.7 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.10 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.30.2 ChimeraX-AtomicLibrary: 4.1.6 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3rc202111240110 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.7.3 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.2 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.22 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.2 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
Cc: | added |
---|---|
Component: | Unassigned → General Controls |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Crash getting cursor position during mouse pause |
comment:2 by , 4 years ago
Resolution: | → can't reproduce |
---|---|
Status: | assigned → closed |
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This crash appears to be from a Qt window toolkit bug.
It is getting the cursor position and mapping it to the graphics pane coordinates using Qt. It is extremely hard to imagine how that could crash. But we have seen tens of crashes in this line of code. This is called when the mouse hovers over the graphics window so it is very commonly executed code. I think instead the crash is not Qt. The C++ stack trace shows it is in Python select
3 libsystem_platform.dylib 0x00007fff2046bd7d _sigtramp + 29
4 select.cpython-38-darwin.so 000000000000000000 0 + 0
This is code that waits for file input and output to complete. How Python select can crash is also a complete mystery.
Other crashes in Python select are #5462, #4967, #4952, #4835, #4660, #4210. Every report is on the Apple M1 processor running ChimeraX with Rosetta emulation. So it looks likely to be an emulation problem. We plan to release a native Apple M1 ChimeraX probably in about 6 months that may avoid this crash.
Unfortunately we don't have enough clues to debug this further.