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Opened 4 years ago
Closed 4 years ago
#5636 closed defect (duplicate)
Delete status bar: wrapped C/C++ object of type QScreen has been deleted
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
>
> "/Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_1_model_3_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_2_model_5_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_3_model_4_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_4_model_1_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_5_model_2_ptm_seed_0_relaxed.pdb\n"
Unknown command:
"/Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_1_model_3_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_2_model_5_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_3_model_4_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_4_model_1_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_5_model_2_ptm_seed_0_relaxed.pdb\n"
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_1_model_3_ptm_seed_0_relaxed.pdb
Chain information for rank_1_model_3_ptm_seed_0_relaxed.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_2_model_5_ptm_seed_0_relaxed.pdb
Chain information for rank_2_model_5_ptm_seed_0_relaxed.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_3_model_4_ptm_seed_0_relaxed.pdb
Chain information for rank_3_model_4_ptm_seed_0_relaxed.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_4_model_1_ptm_seed_0_relaxed.pdb
Chain information for rank_4_model_1_ptm_seed_0_relaxed.pdb #4
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_boot_290350_cuff_del_050645940_25bc0/rank_5_model_2_ptm_seed_0_relaxed.pdb
Chain information for rank_5_model_2_ptm_seed_0_relaxed.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> mmaker
> matchmaker
Missing or invalid "matchAtoms" argument: empty atom specifier
> mmaker #2-5 to #1/D
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_2_model_5_ptm_seed_0_relaxed.pdb, chain D (#2), sequence alignment score
= 1520
RMSD between 210 pruned atom pairs is 0.424 angstroms; (across all 296 pairs:
32.144)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_3_model_4_ptm_seed_0_relaxed.pdb, chain D (#3), sequence alignment score
= 1529.6
RMSD between 224 pruned atom pairs is 0.420 angstroms; (across all 296 pairs:
16.928)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_4_model_1_ptm_seed_0_relaxed.pdb, chain D (#4), sequence alignment score
= 1533.2
RMSD between 230 pruned atom pairs is 0.376 angstroms; (across all 296 pairs:
16.273)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_5_model_2_ptm_seed_0_relaxed.pdb, chain D (#5), sequence alignment score
= 1511.6
RMSD between 220 pruned atom pairs is 0.534 angstroms; (across all 296 pairs:
16.342)
> color bychain
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #3 models
> show #3 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #1 models
> show #1 models
> hide #3 models
> show #3 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> show #2 models
> hide #1 models
> show #1 models
> show #3 models
> show #4 models
> show #5 models
> mmaker #2-5 to #1/D
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_2_model_5_ptm_seed_0_relaxed.pdb, chain D (#2), sequence alignment score
= 1520
RMSD between 210 pruned atom pairs is 0.424 angstroms; (across all 296 pairs:
32.144)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_3_model_4_ptm_seed_0_relaxed.pdb, chain D (#3), sequence alignment score
= 1529.6
RMSD between 224 pruned atom pairs is 0.420 angstroms; (across all 296 pairs:
16.928)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_4_model_1_ptm_seed_0_relaxed.pdb, chain D (#4), sequence alignment score
= 1533.2
RMSD between 230 pruned atom pairs is 0.376 angstroms; (across all 296 pairs:
16.273)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_5_model_2_ptm_seed_0_relaxed.pdb, chain D (#5), sequence alignment score
= 1511.6
RMSD between 220 pruned atom pairs is 0.534 angstroms; (across all 296 pairs:
16.342)
> mlp
Map values for surface "rank_2_model_5_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -25.74, mean -3.566, maximum 22.51
Map values for surface "rank_2_model_5_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -27.6, mean -3.76, maximum 23.61
Map values for surface "rank_2_model_5_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -29.37, mean -1.891, maximum 24.65
Map values for surface "rank_2_model_5_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -25.81, mean -3.583, maximum 25
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -25.47, mean -3.568, maximum 22.63
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -26.47, mean -3.749, maximum 22.77
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -26.46, mean -1.994, maximum 26.4
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -27.99, mean -3.579, maximum 25.36
Map values for surface "rank_4_model_1_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -24.73, mean -3.684, maximum 23.44
Map values for surface "rank_4_model_1_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -27.14, mean -3.788, maximum 23.8
Map values for surface "rank_4_model_1_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -28.11, mean -2.044, maximum 24.56
Map values for surface "rank_4_model_1_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -26.85, mean -3.622, maximum 25.33
Map values for surface "rank_3_model_4_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -27.25, mean -3.406, maximum 22.41
Map values for surface "rank_3_model_4_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -26.92, mean -3.752, maximum 24.05
Map values for surface "rank_3_model_4_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -26.2, mean -1.465, maximum 23.89
Map values for surface "rank_3_model_4_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -25.78, mean -3.646, maximum 25.77
Map values for surface "rank_5_model_2_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -23.79, mean -3.587, maximum 21.94
Map values for surface "rank_5_model_2_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -27.07, mean -3.72, maximum 24.06
Map values for surface "rank_5_model_2_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -24.81, mean -1.981, maximum 25.89
Map values for surface "rank_5_model_2_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -27.77, mean -3.565, maximum 25.74
To also show corresponding color key, enter the above mlp command and add key
true
> color bychain
> hide surfaces
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> select down
Nothing selected
> select down
Nothing selected
> close #1
> close #2
> close #3
> close #4
> close #5
> open
> Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_1_model_3_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_2_model_4_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_3_model_1_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_4_model_2_ptm_seed_0_relaxed.pdb\nfile:///Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_5_model_5_ptm_seed_0_relaxed.pdb\n
No such database
'Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_1_model_3_ptm_seed_0_relaxed.pdb\nfile'
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_1_model_3_ptm_seed_0_relaxed.pdb
Chain information for rank_1_model_3_ptm_seed_0_relaxed.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_2_model_4_ptm_seed_0_relaxed.pdb
Chain information for rank_2_model_4_ptm_seed_0_relaxed.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_3_model_1_ptm_seed_0_relaxed.pdb
Chain information for rank_3_model_1_ptm_seed_0_relaxed.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_4_model_2_ptm_seed_0_relaxed.pdb
Chain information for rank_4_model_2_ptm_seed_0_relaxed.pdb #4
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_BUNN_dbaa9/rank_5_model_5_ptm_seed_0_relaxed.pdb
Chain information for rank_5_model_5_ptm_seed_0_relaxed.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> mmaker #2-5 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_2_model_4_ptm_seed_0_relaxed.pdb, chain D (#2), sequence alignment score
= 2303.2
RMSD between 255 pruned atom pairs is 0.635 angstroms; (across all 462 pairs:
13.471)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_3_model_1_ptm_seed_0_relaxed.pdb, chain D (#3), sequence alignment score
= 2264.8
RMSD between 243 pruned atom pairs is 0.808 angstroms; (across all 462 pairs:
5.561)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_4_model_2_ptm_seed_0_relaxed.pdb, chain D (#4), sequence alignment score
= 2263.6
RMSD between 244 pruned atom pairs is 0.915 angstroms; (across all 462 pairs:
17.978)
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_5_model_5_ptm_seed_0_relaxed.pdb, chain D (#5), sequence alignment score
= 2269.6
RMSD between 232 pruned atom pairs is 0.694 angstroms; (across all 462 pairs:
28.421)
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> color #1 bychain
> show #2 models
> hide #1 models
> color #2 bychain
> color bfactor #2
21980 atoms, 1386 residues, atom bfactor range 18 to 98.5
> style #2 ball
Changed 21980 atom styles
> hide #2 cartoons
> style #2 stick
Changed 21980 atom styles
> style #2 ball
Changed 21980 atom styles
> show #2 atoms
> hbonds #2 reveal true
3075 hydrogen bonds found
> color #2 bychain
> show #2 cartoons
> hide #2 atoms
> ~hbonds
> show #1 models
> mmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain D (#1) with
rank_2_model_4_ptm_seed_0_relaxed.pdb, chain D (#2), sequence alignment score
= 2303.2
RMSD between 255 pruned atom pairs is 0.635 angstroms; (across all 462 pairs:
13.471)
> mmaker #2 to #1/A
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain A (#1) with
rank_2_model_4_ptm_seed_0_relaxed.pdb, chain A (#2), sequence alignment score
= 1763.8
RMSD between 11 pruned atom pairs is 1.565 angstroms; (across all 367 pairs:
66.442)
> mmaker #2 to #1/B
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain B (#1) with
rank_2_model_4_ptm_seed_0_relaxed.pdb, chain B (#2), sequence alignment score
= 2157.5
RMSD between 376 pruned atom pairs is 0.313 angstroms; (across all 424 pairs:
5.270)
> hide #2 models
> close #2-5
> hide atoms
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_BUNNxf1_f7213/rank_1_model_3_ptm_seed_0_relaxed.pdb
Chain information for rank_1_model_3_ptm_seed_0_relaxed.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
> hide surfaces
> hide surfaces
> hide surfaces
> show cartoons
> hide surfaces
> color bychain
> hide #1 models
> hide #2 atoms
> color bfactor #2
23119 atoms, 1449 residues, atom bfactor range 19.9 to 98.5
> color #2 bychain
> hide #2 models
> show #1 models
> show #2 models
> mmaker
> matchmaker
Missing or invalid "matchAtoms" argument: empty atom specifier
> mmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_3_ptm_seed_0_relaxed.pdb, chain B (#2) with
rank_1_model_3_ptm_seed_0_relaxed.pdb, chain B (#1), sequence alignment score
= 2146.1
RMSD between 385 pruned atom pairs is 0.240 angstroms; (across all 424 pairs:
4.210)
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #1 models
Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
Alignment identifier is 1/D
Alignment identifier is 2/D
Alignment identifier is 2/E
> show #1 models
> hide #1 models
> select #1/A:333 #2/A:333
24 atoms, 22 bonds, 2 residues, 2 models selected
> select #1/A:333 #2/A:333
24 atoms, 22 bonds, 2 residues, 2 models selected
Seqview [ID: 1] region 2 chains [333] RMSD: 80.001
> select
> #1/B:43-46,50-58,66-76,91-102,120-133,151-160,170-178,195-200,202-214,232-239,268-281,294-306,320-331,342-344,365-374,391-403,417-419
> #2/B:43-46,50-58,66-76,91-102,120-133,151-160,170-178,195-200,202-214,232-239,268-281,294-306,320-331,342-344,365-374,391-403,417-419
5566 atoms, 5570 bonds, 328 residues, 2 models selected
> select #1/A:13-20,93-98,184-197,305-324 #2/A:13-20,93-98,184-197,305-324
1574 atoms, 1580 bonds, 96 residues, 2 models selected
> select #1/A:367 #2/A:367
30 atoms, 28 bonds, 2 residues, 2 models selected
> select #1/A:229-367 #2/A:229-367
4260 atoms, 4300 bonds, 278 residues, 2 models selected
Seqview [ID: 1] region 2 chains [229-367] RMSD: 93.520
> select #1/A:13-20,93-98,184-197,305-324 #2/A:13-20,93-98,184-197,305-324
1574 atoms, 1580 bonds, 96 residues, 2 models selected
> select #1/A:1 #2/A:1
38 atoms, 36 bonds, 2 residues, 2 models selected
> select #1/A:1-367 #2/A:1-367
11390 atoms, 11510 bonds, 734 residues, 2 models selected
Seqview [ID: 1] region 2 chains [1-367] RMSD: 80.347
> select
> #1/B:43-46,50-58,66-76,91-102,120-133,151-160,170-178,195-200,202-214,232-239,268-281,294-306,320-331,342-344,365-374,391-403,417-419
> #2/B:43-46,50-58,66-76,91-102,120-133,151-160,170-178,195-200,202-214,232-239,268-281,294-306,320-331,342-344,365-374,391-403,417-419
5566 atoms, 5570 bonds, 328 residues, 2 models selected
> select #1/B:1 #2/B:1
38 atoms, 36 bonds, 2 residues, 2 models selected
> select #1/B:1-424 #2/B:1-424
13644 atoms, 13760 bonds, 848 residues, 2 models selected
Seqview [ID: 2] region 2 chains [1-424] RMSD: 4.210
> select #1/C:1 #2/C:1
38 atoms, 36 bonds, 2 residues, 2 models selected
> select #1/C:1-133 #2/C:1-133
4210 atoms, 4244 bonds, 266 residues, 2 models selected
Seqview [ID: 3] region 2 chains [1-133] RMSD: 32.265
> select #1/D:227
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/D:227-421
3127 atoms, 3154 bonds, 195 residues, 1 model selected
> select #1/D:462
15 atoms, 15 bonds, 1 residue, 1 model selected
> select #1/D:462
15 atoms, 15 bonds, 1 residue, 1 model selected
> select #1/D:462
15 atoms, 15 bonds, 1 residue, 1 model selected
> select #1/D:1-462
7358 atoms, 7422 bonds, 462 residues, 1 model selected
> select #1/D:462
15 atoms, 15 bonds, 1 residue, 1 model selected
> select #1/D:181-462
4505 atoms, 4548 bonds, 282 residues, 1 model selected
> select #2/D:1
26 atoms, 25 bonds, 1 residue, 1 model selected
> select #2/D:1-467
7547 atoms, 7627 bonds, 467 residues, 1 model selected
> select #1/D:47
14 atoms, 13 bonds, 1 residue, 1 model selected
> select #1/D:47-370
5152 atoms, 5200 bonds, 324 residues, 1 model selected
> show #1 models
> select #1/D:93-94
34 atoms, 33 bonds, 2 residues, 1 model selected
> select #1/D:93-417
5197 atoms, 5241 bonds, 325 residues, 1 model selected
> hide #1 models
> select #2/D:3-53
820 atoms, 833 bonds, 51 residues, 1 model selected
> select #2/D:3-462
7451 atoms, 7531 bonds, 460 residues, 1 model selected
> select #2/E:3-17,21-30,35-47,53-55
663 atoms, 667 bonds, 41 residues, 1 model selected
> select #2/E:4
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/E:4-57
881 atoms, 892 bonds, 54 residues, 1 model selected
> hbonds sel reveal true
71 hydrogen bonds found
> hbonds sel reveal true
71 hydrogen bonds found
> ~hbonds
> ~hbonds
> hide sel surfaces
> hide sel surfaces
> hide sel atoms
> hide sel cartoons
> hide sel surfaces
> show sel cartoons
> hide #2 models
> show #2 models
> select clear
> show #2 surfaces
> hide #!2 surfaces
> hide #!2 atoms
> show #!2 atoms
> hide #!2 atoms
> show #!2 cartoons
> hide #!2 cartoons
> show #!2 cartoons
> show #1 models
> hide #1 models
> hide #2.5 models
> show #2.5 models
> hide #2.4 models
> show #2.4 models
> hide #!2 models
> show #!2 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 target m
> mlp #!2
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -26.24, mean -4.59, maximum 23.52
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -26.79, mean -4.826, maximum 23.59
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -26.22, mean -4.618, maximum 24
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -26.39, mean -4.202, maximum 22.99
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_E SES surface":
minimum -27.32, mean -2.514, maximum 23.92
To also show corresponding color key, enter the above mlp command and add key
true
> hide #!2 surfaces
> mlp #!2
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_A SES surface":
minimum -26.24, mean -4.59, maximum 23.52
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_B SES surface":
minimum -26.79, mean -4.826, maximum 23.59
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_C SES surface":
minimum -26.22, mean -4.618, maximum 24
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_D SES surface":
minimum -26.39, mean -4.202, maximum 22.99
Map values for surface "rank_1_model_3_ptm_seed_0_relaxed.pdb_E SES surface":
minimum -27.32, mean -2.514, maximum 23.92
To also show corresponding color key, enter the above mlp command and add key
true
> hide #!2 surfaces
> hide #2.1 models
> hide #!2 models
> show #2.1 models
> hide #!2 models
> hide #2.1 models
> hide #2.2 models
> hide #2.3 models
> hide #2.4 models
> hide #2.5 models
> show #2.1 models
> hide #2.1 models
> hide #!2 models
> show #2.2 models
> select #1/C:1-2 #2/C:1-2
62 atoms, 60 bonds, 4 residues, 2 models selected
> select #1/C:1-125 #2/C:1-125
3942 atoms, 3974 bonds, 250 residues, 2 models selected
Seqview [ID: 3] region 2 chains [1-125] RMSD: 32.269
> select #2/D:102
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #2/D:102-158
924 atoms, 931 bonds, 57 residues, 1 model selected
> select #1/B:144 #2/B:144
32 atoms, 30 bonds, 2 residues, 2 models selected
> select #1/B:144-241 #2/B:144-241
3236 atoms, 3260 bonds, 196 residues, 2 models selected
Seqview [ID: 2] region 2 chains [144-241] RMSD: 0.155
> close #1
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 635, in _mmap_mod_cb
self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 392, in disassociate
self.session.alignments.destroy_alignment(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/manager.py", line 108, in destroy_alignment
alignment._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 603, in _destroy
self._notify_observers(self.NOTE_DESTROYED, None)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 652, in _notify_observers
recipient.alignment_notification(note_name, note_data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 474, in alignment_notification
self.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 512, in delete
ToolInstance.delete(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 154, in delete
self.session.ui.remove_tool(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 345, in remove_tool
self.main_window.remove_tool(tool_instance)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 725, in remove_tool
tw._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2049, in _destroy
self.__toolkit.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2189, in destroy
sbar.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy
v.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete
self.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current
return self._opengl_context.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current
qc = self._initialize_context()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
Error processing trigger "modified":
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 635, in _mmap_mod_cb
self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 392, in disassociate
self.session.alignments.destroy_alignment(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/manager.py", line 108, in destroy_alignment
alignment._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 603, in _destroy
self._notify_observers(self.NOTE_DESTROYED, None)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 652, in _notify_observers
recipient.alignment_notification(note_name, note_data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 474, in alignment_notification
self.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 512, in delete
ToolInstance.delete(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 154, in delete
self.session.ui.remove_tool(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 345, in remove_tool
self.main_window.remove_tool(tool_instance)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 725, in remove_tool
tw._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2049, in _destroy
self.__toolkit.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2189, in destroy
sbar.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy
v.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete
self.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current
return self._opengl_context.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current
qc = self._initialize_context()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
Error processing trigger "modified":
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 635, in _mmap_mod_cb
self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 392, in disassociate
self.session.alignments.destroy_alignment(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/manager.py", line 108, in destroy_alignment
alignment._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 603, in _destroy
self._notify_observers(self.NOTE_DESTROYED, None)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 652, in _notify_observers
recipient.alignment_notification(note_name, note_data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 474, in alignment_notification
self.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 512, in delete
ToolInstance.delete(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 154, in delete
self.session.ui.remove_tool(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 345, in remove_tool
self.main_window.remove_tool(tool_instance)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 725, in remove_tool
tw._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2049, in _destroy
self.__toolkit.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2189, in destroy
sbar.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy
v.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete
self.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current
return self._opengl_context.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current
qc = self._initialize_context()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
Error processing trigger "modified":
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
See log for complete Python traceback.
> close #2
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 635, in _mmap_mod_cb
self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 392, in disassociate
self.session.alignments.destroy_alignment(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/manager.py", line 108, in destroy_alignment
alignment._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 603, in _destroy
self._notify_observers(self.NOTE_DESTROYED, None)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 652, in _notify_observers
recipient.alignment_notification(note_name, note_data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 474, in alignment_notification
self.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 512, in delete
ToolInstance.delete(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 154, in delete
self.session.ui.remove_tool(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 345, in remove_tool
self.main_window.remove_tool(tool_instance)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 725, in remove_tool
tw._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2049, in _destroy
self.__toolkit.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2189, in destroy
sbar.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy
v.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete
self.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current
return self._opengl_context.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current
qc = self._initialize_context()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
Error processing trigger "modified":
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 635, in _mmap_mod_cb
self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 392, in disassociate
self.session.alignments.destroy_alignment(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/manager.py", line 108, in destroy_alignment
alignment._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 603, in _destroy
self._notify_observers(self.NOTE_DESTROYED, None)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 652, in _notify_observers
recipient.alignment_notification(note_name, note_data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 474, in alignment_notification
self.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 512, in delete
ToolInstance.delete(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 154, in delete
self.session.ui.remove_tool(self)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 345, in remove_tool
self.main_window.remove_tool(tool_instance)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 725, in remove_tool
tw._destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2049, in _destroy
self.__toolkit.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2189, in destroy
sbar.destroy()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy
v.delete()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete
self.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current
return self._opengl_context.make_current()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current
qc = self._initialize_context()
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
Error processing trigger "modified":
RuntimeError: wrapped C/C++ object of type QScreen has been deleted
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context
qc.setScreen(self._screen)
See log for complete Python traceback.
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_UapNxt1Nxf1_72406/rank_1_model_5_ptm_seed_0_relaxed.pdb
Chain information for rank_1_model_5_ptm_seed_0_relaxed.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> color bychain
Alignment identifier is 1/A
Alignment identifier is 1/B
Alignment identifier is 1/C
Alignment identifier is 1/D
> open
> /Volumes/groups/brennecke/Ralf/AF2/prediction_UapNxt1Nxf3_415e7/rank_1_model_3_ptm_seed_0_relaxed.pdb
Chain information for rank_1_model_3_ptm_seed_0_relaxed.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
> hide #2 models
> hide #1 models
> show #2 models
> color #2 bychain
> show #1 models
> mmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rank_1_model_5_ptm_seed_0_relaxed.pdb, chain A (#1) with
rank_1_model_3_ptm_seed_0_relaxed.pdb, chain A (#2), sequence alignment score
= 2167.1
RMSD between 370 pruned atom pairs is 0.693 angstroms; (across all 424 pairs:
16.109)
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/alignment_headers/rmsd.py", line 199, in _atomic_changes_cb
if chain.structure in changes.modified_structures():
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/alignment_headers/rmsd.py", line 199, in _atomic_changes_cb
if chain.structure in changes.modified_structures():
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/alignment_headers/rmsd.py", line 199, in _atomic_changes_cb
if chain.structure in changes.modified_structures():
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/alignment_headers/rmsd.py", line 199, in _atomic_changes_cb
if chain.structure in changes.modified_structures():
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/alignment_headers/rmsd.py", line 199, in _atomic_changes_cb
if chain.structure in changes.modified_structures():
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 76.1
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache: 8 MB
Memory: 8 GB
Software:
System Software Overview:
System Version: macOS 12.0.1 (21A559)
Kernel Version: Darwin 21.1.0
Time since boot: 11 days 1:37
Graphics/Displays:
Apple G13G:
Chipset Model: Apple G13G
Type: GPU
Bus: Built-In
Total Number of Cores: 7
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
HP LP3065:
Resolution: 2560 x 1600
UI Looks like: 2560 x 1600 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → UI |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Delete status bar: wrapped C/C++ object of type QScreen has been deleted |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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