![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Sep 21, 2024:
- 8:33 AM Ticket #15990 (SEQCROW: open XYZ: invalid literal for int()) created by
- […]
- 12:05 AM Ticket #15986 (The X11 connection broke) closed by
- limitation: Sometimes the graphics driver crashes taking the X11 server with it.
Sep 20, 2024:
- 6:20 PM Ticket #15422 (Want render by attribute GUI to show last used colors and values) closed by
- fixed: Fix: …
- 1:53 PM Ticket #15989 (Crash saving PNG) created by
- […]
- 1:07 PM Ticket #15988 (Tried to add model but parent does not exist) created by
- […]
- 11:47 AM Ticket #15421 (Render by attribute GUI changes color bar values when it should not) closed by
- fixed: Fix: …
- 10:40 AM Ticket #15966 (Installation on Windows Arm64) closed by
- fixed: Your welcome! Glad to hear it worked.
- 9:10 AM Ticket #15985 (Crash in garbage collection) closed by
- duplicate
- 9:08 AM Ticket #15984 (User can't write into their own folder) closed by
- not a bug
- 9:04 AM Ticket #15983 (Cannot open PDB file for writing) closed by
- can't reproduce: Version 1.0; this throws IOError nowadays
- 8:53 AM Ticket #15987 (Possible displayed / visible selectors) created by
- […]
- 8:27 AM Ticket #15986 (The X11 connection broke) created by
- […]
- 4:18 AM Ticket #15985 (Crash in garbage collection) created by
- […]
- 1:31 AM Ticket #15984 (User can't write into their own folder) created by
- […]
Sep 19, 2024:
- 11:03 PM Ticket #15983 (Cannot open PDB file for writing) created by
- […]
- 4:15 PM 2024-9-19 edited by
- (diff)
- 3:59 PM Ticket #15981 (Crash on display change, Mac, Qt 6.6) closed by
- duplicate: Crash in Mac Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties …
- 3:30 PM Ticket #15977 (Problems with maps in sessions) closed by
- not a bug: ChimeraX sessions include a file path to map (.mrc) files when the …
- 3:23 PM Ticket #15975 (Multiple OpenGL errors) closed by
- nonchimerax: ChimeraX is giving graphics errors because your Intel graphics driver …
- 3:20 PM Ticket #15973 (glDrawBuffer: invalid operation, Linux) closed by
- can't reproduce: This OpenGL error has been reported dozens of times always on Linux. …
- 3:18 PM Ticket #15972 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties, …
- 3:11 PM Ticket #15979 (Slight bug in ChimeraX) closed by
- duplicate: Was addressed on chimerax-users list
- 3:00 PM Ticket #15978 (Save mmCIF: 'Residue' object has no attribute 'display') closed by
- duplicate: Hi Disha, You submitted this exact same bug 4 weeks ago, and I …
- 3:00 PM Ticket #15982 (Crash disconnecting hdmi projector, Mac, Qt 6.7.2) created by
- […]
- 2:52 PM Ticket #15976 (Crash in garbage collection) closed by
- duplicate
- 10:59 AM Ticket #15981 (Crash on display change, Mac, Qt 6.6) created by
- […]
- 7:47 AM Ticket #15980 (Render by Attribute: 'MarkedHistogram' object has no attribute '_min_val') created by
- […]
- 6:12 AM Ticket #15979 (Slight bug in ChimeraX) created by
- […]
- 6:05 AM Ticket #15978 (Save mmCIF: 'Residue' object has no attribute 'display') created by
- […]
- 5:51 AM Ticket #15977 (Problems with maps in sessions) created by
- […]
- 4:47 AM Ticket #15976 (Crash in garbage collection) created by
- […]
- 4:44 AM Ticket #15975 (Multiple OpenGL errors) created by
- […]
- 4:06 AM Ticket #15974 (OpenCommands: name 'apply_to_models' is not defined) created by
- […] zn.co-rohf-svpd.out
- 1:07 AM Ticket #15973 (glDrawBuffer: invalid operation, Linux) created by
- […]
Sep 18, 2024:
- 8:43 PM Ticket #15972 (Crash on Mac waking from sleep) created by
- […]
- 8:17 PM 2024-9-19 edited by
- (diff)
- 6:57 PM Ticket #15971 (nuc slab positions miscalculated?) created by
- Image and session attached. When I open the same structure twice and …
- 5:49 PM Ticket #15967 (altloc error after deleting hydrogens) closed by
- fixed: Fix: …
- 3:10 PM Ticket #15964 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Crash in Apple's Intel graphics driver.
- 3:08 PM Ticket #15963 (Graphics crash, macOS 14.0, M2 GPU) closed by
- nonchimerax: Crash in Apple's M2 GPU graphics driver in glBufferSubData() …
- 3:04 PM Ticket #15962 (GLTF: KeyError: 'bufferView') closed by
- limitation: The user tried to open GLTF file which probably contains sparse …
- 1:08 PM Ticket #15970 (CliX: operand type(s) for |: 'type' and 'NoneType') closed by
- duplicate: Duplicate of #15969
- 12:36 PM Ticket #15970 (CliX: operand type(s) for |: 'type' and 'NoneType') created by
- […] error_clix.txt
- 12:34 PM Ticket #15969 (CliX: unsupported operand type(s) for |: 'type' and 'NoneType') created by
- […]
- 12:03 PM Ticket #15644 (Bundle builder should tell cython correct deployment target by setting ...) closed by
- fixed: Fixed in …
- 11:35 AM Ticket #15968 (Cross-compile for arm64 on Windows) created by
- 11:34 AM Ticket #15967 (altloc error after deleting hydrogens) created by
- […]
- 11:24 AM Ticket #15965 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:13 AM Ticket #15961 (Crash showing error dialog) closed by
- can't reproduce: If the traceback is to be believed, error reporting problem with …
- 9:59 AM Ticket #15959 (MemoryError restoring session) closed by
- limitation: Looks like they were probably restoring a trajectory. I'm surprised …
- 9:53 AM Ticket #15958 (Segmentations: self.view.drawing.parent is None) closed by
- duplicate: Duplicate of #15957
- 9:48 AM Ticket #15956 (ViewDockX: cannot convert float infinity to integer) closed by
- duplicate: Hi Mojgan, Thanks for reporting this problem. It was fixed on August …
- 8:59 AM Ticket #15966 (Installation on Windows Arm64) created by
- I recently started using one of the newer Arm64 based windows PCs and …
- 7:41 AM Ticket #15965 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:21 AM Ticket #15964 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) created by
- […]
- 7:01 AM Ticket #15963 (Graphics crash, macOS 14.0, M2 GPU) created by
- […]
- 6:46 AM Ticket #15962 (GLTF: KeyError: 'bufferView') created by
- […]
- 2:51 AM Ticket #15961 (Crash showing error dialog) created by
- […]
- 1:36 AM Ticket #15960 (ChimeraX toolbar missing) created by
- […]
- 12:53 AM Ticket #15959 (MemoryError restoring session) created by
- […]
Sep 17, 2024:
- 4:58 PM Ticket #15958 (Segmentations: self.view.drawing.parent is None) created by
- […]
- 4:58 PM Ticket #15957 (Segmentations: self.view.drawing.parent is None) created by
- […]
- 2:58 PM Dev2024-9-23 created by
- 2:55 PM 2024-9-19 created by
- 2:54 PM DeveloperMeetings edited by
- (diff)
- 2:04 PM Ticket #15956 (ViewDockX: cannot convert float infinity to integer) created by
- […]
- 1:39 PM ChangeLog edited by
- (diff)
- 11:18 AM Ticket #15954 (Altloc change doesn't update ribbon) closed by
- fixed: Fix: …
- 10:18 AM Ticket #15953 (Keyboard interrupt during restoration of map data) closed by
- can't reproduce: User typed ctrl-C at shell where ChimeraX was run on Linux during a …
- 9:25 AM Ticket #15955 (H-bonds: acc_phi_psi() number of arguments) closed by
- not a bug: Hi Heather, This problem typically occurs when the bond connectivity …
- 8:59 AM Ticket #15955 (H-bonds: acc_phi_psi() number of arguments) created by
- […]
- 7:35 AM Ticket #15954 (Altloc change doesn't update ribbon) created by
- […]
- 5:37 AM Ticket #15953 (Keyboard interrupt during restoration of map data) created by
- […]
- 3:53 AM Ticket #15952 (Blast results tool_window is None) created by
- […]
Sep 16, 2024:
- 4:33 PM Ticket #9404 ('center' arg when opening small molecules) closed by
- fixed: Okay, there is now a generic 'center' arg to the open command that …
- 3:49 PM Dev2024-9-16 edited by
- (diff)
- 2:53 PM Dev2024-9-16 edited by
- (diff)
- 10:58 AM Ticket #15951 (Cannot create temp save file) closed by
- can't reproduce
- 10:37 AM Ticket #15950 (Crash in event loop) closed by
- can't reproduce
- 6:50 AM Ticket #15951 (Cannot create temp save file) created by
- […]
- 4:35 AM Ticket #15950 (Crash in event loop) created by
- […]
Sep 13, 2024:
- 5:56 PM Dev2024-9-16 edited by
- (diff)
- 5:49 PM ChangeLog edited by
- (diff)
- 12:22 PM Ticket #15949 (Add molmap option to create a cube shaped map) closed by
- fixed: Done. Added "cube" option to molmap command (default false). If cube …
- 11:16 AM Ticket #15949 (Add molmap option to create a cube shaped map) created by
- From: Oliver Clarke via ChimeraX-users Subject: [chimerax-users] …
- 11:02 AM Ticket #15948 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties. …
- 11:01 AM Ticket #15947 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in displayConfigFinalizedProc. Probably connecting …
- 11:00 AM Ticket #15945 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in displayConfigFinalizedProc. Probably connecting …
- 10:58 AM Ticket #15943 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Crash in Apple Intel graphics driver. Unfortunately Apple's OpenGL …
- 10:44 AM Ticket #15937 (Generated CRYST1 record mis-formatted) closed by
- nonchimerax
- 10:40 AM Dev2024-9-16 edited by
- (diff)
- 10:40 AM Dev2024-9-16 edited by
- (diff)
- 9:11 AM Ticket #15941 (Crash reading mmCIF) closed by
- can't reproduce
- 9:09 AM Ticket #15940 (QObject::~QObject: Timers cannot be stopped from another thread) closed by
- can't reproduce: Crash was in 1.8, and hard to say what the cause is without knowing …
- 7:36 AM Ticket #15948 (Crash on Mac waking from sleep) created by
- […]
- 1:21 AM Ticket #15947 (Crash on Mac waking from sleep) created by
- […]
Sep 12, 2024:
- 8:41 PM Ticket #15946 (CCP4MTZfile: open_read - File missing or corrupted) created by
- […]
- 5:36 PM Ticket #15945 (Crash on Mac waking from sleep) created by
- […]
- 4:19 PM Ticket #15930 (Tutorial sample code unavailable) closed by
- fixed: The script needed to set the HOME environment variable and flush the …
- 3:56 PM Ticket #15899 (Hidden vertices in GLB output, and GLB nodes not centered at (0,0,0)) closed by
- fixed: Fixed. Elaine could you document the new save gltf option …
- 3:02 PM Ticket #15944 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:03 PM Ticket #15943 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by
- […]
- 1:32 PM Ticket #15942 (Restore session: LZ4F_decompress failed with code: ...) created by
- […]
- 11:44 AM 2024-9-12 edited by
- (diff)
- 11:29 AM Ticket #15941 (Crash reading mmCIF) created by
- […]
- 11:11 AM Ticket #15940 (QObject::~QObject: Timers cannot be stopped from another thread) created by
- […]
- 11:05 AM Ticket #15935 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties. …
- 11:03 AM Ticket #15931 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt 6.6 in displayConfigFinalizedProc. Probably …
- 10:32 AM Ticket #15938 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by
- duplicate: Duplicate of #15753
- 10:24 AM Ticket #15936 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 10:21 AM Ticket #15933 (Crash in garbage collection) closed by
- duplicate
- 10:20 AM Ticket #15932 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Would need the PDB in order to work on this.
- 9:04 AM Ticket #15939 (SEQCROW: reading .log: list index out of range) created by
- […]
- 8:51 AM Ticket #15938 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 5:22 AM Ticket #15937 (Generated CRYST1 record mis-formatted) created by
- […] 5ewj_ab.pdb
- 5:21 AM Ticket #15936 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 4:34 AM Ticket #15935 (Crash on Mac waking from sleep) created by
- […]
Sep 11, 2024:
- 6:36 PM Ticket #15934 (Saved GLTF is shifted relative to original model position) closed by
- fixed: Fixed. The ChimeraX position matrix was being applied both to the …
- 5:29 PM Ticket #15934 (Saved GLTF is shifted relative to original model position) created by
- […]
- 4:24 PM Ticket #10356 (DICOM: bits_allocated is None) closed by
- can't reproduce: User never attached their files for testing
- 3:33 PM Ticket #15926 (BLAST web service is not returning results) closed by
- fixed: The workers died; I restarted them. We've got to figure out how they …
- 2:54 PM Ticket #15918 (ChimeraX 1.8 on macOS Sequoia) closed by
- not a bug
- 12:26 PM Ticket #15933 (Crash in garbage collection) created by
- […]
- 12:20 PM Ticket #15932 (UnicodeDecodeError reading PDB file) created by
- […]
- 11:43 AM Ticket #15931 (Crash on Mac waking from sleep) created by
- […]
- 11:23 AM Ticket #15928 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by
- duplicate: Duplicate of #15753
- 11:12 AM Ticket #15897 (Core include files not found) reopened by
- 9:55 AM Ticket #15930 (Tutorial sample code unavailable) created by
- Dear Chimera Developers, it seems the example source code download …
- 5:10 AM Ticket #15929 (Flatpak as extension-building platform) created by
- […]
- 4:10 AM Ticket #15928 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 1:26 AM Ticket #15927 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Sep 10, 2024:
- 6:55 PM Ticket #15926 (BLAST web service is not returning results) created by
- […]
- 4:24 PM Ticket #15925 (Crash in CrBrowserMain) closed by
- can't reproduce
- 3:07 PM Ticket #15925 (Crash in CrBrowserMain) created by
- […]
- 2:47 PM Ticket #15924 (Internal Server Error contacting toolshed) created by
- […]
- 2:31 PM Ticket #15923 (volume splitbyzone: ArrayMemoryError) closed by
- limitation: Ran out of memory making copies of a 520 by 520 by 520 map splitting …
- 2:24 PM Ticket #15922 (Error contacting the toolshed at startup?) closed by
- can't reproduce: It would be nice if the service being accessed were identified …
- 1:49 PM Ticket #15923 (volume splitbyzone: ArrayMemoryError) created by
- […]
- 1:46 PM Ticket #15922 (Error contacting the toolshed at startup?) created by
- […]
- 11:57 AM Ticket #15920 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:54 AM Dev2024-9-16 created by
- 11:54 AM 2024-9-12 created by
- 11:52 AM DeveloperMeetings edited by
- (diff)
- 11:17 AM Ticket #15917 (Crash in glBufferSubData after "volume level") closed by
- duplicate: Crash in Apple's graphics driver showing large map, M2 Max GPU. I …
- 11:13 AM Ticket #15919 (Crash on Mac waking from sleep) closed by
- duplicate: Qt 6.6 crash in displayConfigFinalizedProc, either from connecting or …
- 10:35 AM Ticket #15916 (sym: tuple index out of range) closed by
- fixed: Your sym command that produces the error has the wrong syntax sym …
- 8:37 AM Ticket #15921 (Could not instantiate StructureSeq.structure) created by
- […]
- 7:31 AM Ticket #15920 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) created by
- […]
- 7:14 AM Ticket #15919 (Crash on Mac waking from sleep) created by
- […]
- 6:03 AM Ticket #15918 (ChimeraX 1.8 on macOS Sequoia) created by
- […] [[Image(...)]] [[Image(...)]] …
Sep 9, 2024:
- 10:02 PM Ticket #15917 (Crash in glBufferSubData after "volume level") created by
- […]
- 5:43 PM Ticket #15916 (sym: tuple index out of range) created by
- […]
- 4:44 PM Ticket #15897 (Core include files not found) closed by
-
not a bug: You specify your core dependency with
~=1.8.0.~=in PEP440 is the … - 4:39 PM Ticket #5952 (Render By Attribute tool) closed by
- fixed: Added last missing features of the tool (linear vs. logarithmic …
- 4:09 PM Dev2024-9-9 edited by
- (diff)
- 2:23 PM Ticket #15906 (ui view fourup: ZeroDivisionError) closed by
- duplicate: Should be fixed in any recent daily build.
- 2:02 PM Ticket #15915 (GL.glClear: access violation) closed by
- can't reproduce: Probably graphics driver problem. Error in glClear() drawing status …
- 2:00 PM Dev2024-9-9 edited by
- (diff)
- 1:57 PM Ticket #15914 (Crash on Mac waking from sleep) closed by
- duplicate: Qt 6.6 crash in displayConfigFinalizedProc() either connecting or …
- 1:52 PM Ticket #15913 (Update atomic bundle) closed by
- not a bug: Hi Chen, The Atomic bundle is shipped as part of the ChimeraX app, so …
- 12:50 PM Ticket #15915 (GL.glClear: access violation) created by
- […]
- 12:12 PM Ticket #15910 (Crash on Mac waking from sleep) closed by
- duplicate: Unfortunately a bug in the Qt window toolkit used by ChimeraX …
- 12:11 PM Ticket #15912 (Generic chooser widget: argument of type 'NoneType' is not iterable) closed by
- duplicate: Hi Baturay, Thanks for reporting this problem. It was fixed in the …
- 12:09 PM Ticket #15909 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:07 PM Ticket #15905 (Crash in glBufferSubData) closed by
- duplicate: Same problem as your previous crash (#15903), Mac graphics driver …
- 12:01 PM Ticket #15903 (Crash in glBufferSubData) closed by
- nonchimerax: ChimeraX crashed in the Mac OpenGL driver in gldBufferSubData(). I …
- 11:52 AM Ticket #15902 (glDrawBuffer: invalid operation) closed by
- duplicate: Never figured this OpenGL but out, only happens on Linux. Possibly …
- 11:51 AM Ticket #15901 (Crash on Mac waking from sleep) closed by
- duplicate: Unfortunately a bug in the Qt window toolkit used by ChimeraX …
- 11:39 AM Ticket #15914 (Crash on Mac waking from sleep) created by
- […]
- 11:30 AM Ticket #15908 (No error reported) closed by
- not a bug
- 11:29 AM Ticket #15907 (No error reported) closed by
- not a bug
- 11:16 AM Ticket #15900 (colored stl file for 3d printing) closed by
- duplicate: Asked and answered on the chimerax-users list
- 10:38 AM Ticket #15913 (Update atomic bundle) created by
- […]
- 4:52 AM Ticket #15912 (Generic chooser widget: argument of type 'NoneType' is not iterable) created by
- […]
- 2:42 AM Ticket #15911 (Color-picker text fields truncated on Windows) created by
- […] Screenshot 2024-09-09 103941.png
- 12:48 AM Ticket #15910 (Crash on Mac waking from sleep) created by
- […]
Sep 8, 2024:
- 7:50 PM Ticket #15909 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics) created by
- […]
- 7:07 PM Ticket #15908 (No error reported) created by
- […]
- 7:07 PM Ticket #15907 (No error reported) created by
- […]
- 12:29 AM Ticket #10035 (Add tests to DICOM) closed by
- fixed: Added tests for opening DICOM files in …
Sep 7, 2024:
- 10:19 PM Ticket #15906 (ui view fourup: ZeroDivisionError) created by
- […]
- 4:46 PM Ticket #15905 (Crash in glBufferSubData) created by
- […]
- 1:38 PM Ticket #15904 (UV/Vis Spectrum: list index out of range) created by
- […]
- 10:35 AM Ticket #15903 (Crash in glBufferSubData) created by
- […]
- 7:04 AM Ticket #15902 (glDrawBuffer: invalid operation) created by
- […]
Sep 6, 2024:
- 10:13 PM Ticket #15901 (Crash on Mac waking from sleep) created by
- […]
- 3:01 PM Ticket #15900 (colored stl file for 3d printing) created by
- […] [[Image(...)]]
- 12:04 PM Ticket #15899 (Hidden vertices in GLB output, and GLB nodes not centered at (0,0,0)) created by
- […] output.png
- 11:59 AM Ticket #15898 (Crash handling window screen change) closed by
- duplicate: The Mac Qt 6.6 window toolkit crashed in …
- 11:55 AM Ticket #15896 (Crash drawing scene) closed by
- nonchimerax: Graphics driver crash, Linux OpenGL version: 4.3 (Core Profile) Mesa …
- 11:52 AM Ticket #15894 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash configuring displays in displayConfigFinalizedProc.
- 11:50 AM Ticket #15890 (Framebuffer image capture creation failed) closed by
- nonchimerax: Qt errors due to broken Nvidia graphics driver on Linux.
- 11:48 AM Ticket #15888 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties.
- 10:42 AM Ticket #15898 (Crash handling window screen change) created by
- […]
- 10:32 AM Ticket #15895 (Crash in QWebEngine backend) closed by
- can't reproduce
- 9:23 AM Ticket #15892 (Crash using open/save dialog) closed by
- can't reproduce
- 9:19 AM Ticket #15891 (Crash using open/save dialog) closed by
- can't reproduce
- 9:07 AM Ticket #15886 (PDB/PSF) closed by
- not a bug: Hi Miguel, A PSF file describes the atoms and connectivity of a …
- 7:32 AM Ticket #15897 (Core include files not found) created by
- […]
- 6:23 AM Ticket #15896 (Crash drawing scene) created by
- […]
- 5:37 AM Ticket #15895 (Crash in QWebEngine backend) created by
- […]
- 3:25 AM Ticket #15894 (Crash on Mac waking from sleep) created by
- […]
- 1:33 AM Ticket #15893 (Open session: is_gzip_file: Operation timed out) created by
- […]
- 12:05 AM Ticket #15892 (Crash using open/save dialog) created by
- […]
- 12:04 AM Ticket #15891 (Crash using open/save dialog) created by
- […]
Sep 5, 2024:
- 10:18 PM Ticket #15890 (Framebuffer image capture creation failed) created by
- […]
- 5:42 PM Ticket #15889 (ISOLDE: wrapped C/C++ object of type QToolButton has been deleted) created by
- […]
- 2:16 PM 2024-9-5 edited by
- (diff)
- 1:46 PM Ticket #15888 (Crash on Mac waking from sleep) created by
- […]
- 1:20 PM Ticket #15887 (Can't get it to load) created by
- […]
- 1:01 PM Ticket #15885 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:42 PM Ticket #15886 (PDB/PSF) created by
- […]
- 10:37 AM Ticket #15884 (label monitoring: 'Changes' object has no attribute ...) closed by
- duplicate: Duplicate of #15177
- 10:34 AM Ticket #15883 (Crash drawing ribbons) closed by
- duplicate
- 10:34 AM Ticket #15882 (Crash drawing ribbons) closed by
- duplicate: Basically a duplicate of #15880
- 9:02 AM Ticket #15881 (Crash drawing ribbons) closed by
- duplicate: Duplicate of #15880, but with a more complete log (but still some …
- 8:59 AM Ticket #15880 (Crash drawing ribbons) closed by
- can't reproduce: Log obviously incomplete; was accessing some atomic property when the …
- 8:55 AM Ticket #15879 (Unknown problem) closed by
- can't reproduce
- 6:15 AM Ticket #15885 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) created by
- […]
- 4:21 AM Ticket #15884 (label monitoring: 'Changes' object has no attribute ...) created by
- […]
Sep 4, 2024:
- 9:03 PM Ticket #15883 (Crash drawing ribbons) created by
- […]
- 9:00 PM Ticket #15882 (Crash drawing ribbons) created by
- […]
- 8:58 PM Ticket #15881 (Crash drawing ribbons) created by
- […]
- 8:55 PM Ticket #15880 (Crash drawing ribbons) created by
- […]
- 7:00 PM Ticket #15879 (Unknown problem) created by
- […]
- 3:52 PM Ticket #15875 (Graphics crash, macOS 14.5, Mac M1 Max GPU) closed by
- nonchimerax: While this is reproducible it seems almost certainly a graphics driver …
- 12:24 PM Ticket #15874 (Graphics crash, macOS 14.5, M1 GPU) closed by
- can't reproduce: Crashed on OpenGL glBufferData(). User was showing large maps 1280 x …
- 11:45 AM Ticket #15876 (Dock Prep: wrapped C/C++ object of type ShortASList has been deleted) closed by
- can't reproduce
- 11:31 AM Ticket #15857 (Index out of range updating header sequence) closed by
- fixed: Fix in tomorrow's daily build. Fix: …
- 9:24 AM Ticket #15878 (Crash during window close) closed by
- can't reproduce
- 9:04 AM Ticket #15878 (Crash during window close) created by
- […]
- 2:05 AM Ticket #15877 (Graphics crash, macOS 14.5, Mac M1 Max) created by
- […]
- 1:44 AM Ticket #15876 (Dock Prep: wrapped C/C++ object of type ShortASList has been deleted) created by
- […] UF_058_XP_037525416.1-AF-A0A131YF69-F1-model_v4.pdb
- 1:18 AM Ticket #15875 (Graphics crash, macOS 14.5, Mac M1 Max GPU) created by
- […]
Sep 3, 2024:
- 2:39 PM Ticket #15872 (Color zone "far color" arg problem) closed by
- fixed: Fixed in daily builds Sept 3, 2024 or newer. The farColor option …
- 2:19 PM Ticket #15863 (Session restore: No module named 'lz4._version') closed by
- can't reproduce: Perhaps the installation is corrupted, or a third party package or …
- 2:01 PM Ticket #15874 (Graphics crash, macOS 14.5, M1 GPU) created by
- […]
- 1:26 PM Ticket #15873 (SEQCROW: index out of bounds showing orbitals) created by
- […] ERRADO.out
- 1:09 PM Ticket #15872 (Color zone "far color" arg problem) created by
- […]
- 12:50 PM Ticket #15871 (Crash on Mac waking from sleep) closed by
- duplicate: Unfortunately Qt window toolkit version 6.6 that ChimeraX 1.8 uses …
- 12:47 PM Ticket #15870 (glTexImage2D: out of memory) closed by
- can't reproduce: The first glTexImage2D() call that failed with "out of memory" was …
- 12:05 PM Ticket #15865 (Deprotonated CYS) closed by
- limitation: Hi Tristan, ChimeraX's atom typing only considers bonded connectivity …
- 11:53 AM Ticket #15864 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt bug, crashing in _NSViewHierarchyDidChangeBackingProperties, on …
- 11:52 AM Ticket #15859 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt bug, crashing in _NSViewHierarchyDidChangeBackingProperties, on …
- 11:52 AM Ticket #15858 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt bug, crashing in _NSViewHierarchyDidChangeBackingProperties, on …
- 11:50 AM Dev2024-9-9 created by
- 11:49 AM 2024-9-5 created by
- 11:48 AM DeveloperMeetings edited by
- (diff)
- 9:23 AM Ticket #15868 (Alphafold interfaces: PAE not opened) closed by
- duplicate: Duplicate of #15869
- 9:20 AM Ticket #15867 (Crash in garbage collection) closed by
- duplicate: Hi Zeba, Thanks for reporting this problem. The garbage-collection …
- 9:16 AM Ticket #15871 (Crash on Mac waking from sleep) created by
- […]
- 9:05 AM Ticket #15861 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:03 AM Ticket #15860 (A destroyed ToolWindow got a KeyPressEvent) closed by
- can't reproduce
- 5:15 AM Ticket #15870 (glTexImage2D: out of memory) created by
- […]
- 4:17 AM Ticket #15869 (Alphafold interfaces: PAE not opened) created by
- […] 2024-09-03-131111_1917x1055_scrot.png
- 4:05 AM Ticket #15868 (Alphafold interfaces: PAE not opened) created by
- […]
Sep 2, 2024:
- 11:34 PM Ticket #15867 (Crash in garbage collection) created by
- […]
- 9:32 AM Ticket #15866 (Clipper: density sphere not aligned with structure) created by
- […]
- 7:01 AM Ticket #15865 (Deprotonated CYS) created by
- […] 2zpa_rebuilt.cif
- 4:06 AM Ticket #15864 (Crash on Mac waking from sleep) created by
- […]
- 2:09 AM Ticket #15863 (Session restore: No module named 'lz4._version') created by
- […]
Sep 1, 2024:
- 7:34 PM Ticket #15862 (ISOLDE: too many hydrogens for SER) created by
- […] ISOLDErefine3_SepAMono_BugReport.pdb
- 7:05 AM Ticket #15861 (MemoryError opening mmCIF files) created by
- […]
- 6:54 AM Ticket #15860 (A destroyed ToolWindow got a KeyPressEvent) created by
- […]
- 6:42 AM Ticket #15859 (Crash on Mac waking from sleep) created by
- […]
Aug 31, 2024:
Aug 30, 2024:
- 2:48 PM Ticket #15843 (RFE: xml2toml function in bundle builder) closed by
- fixed: Bundle builder can now perform rudimentary conversion of …
- 2:32 PM Ticket #15850 (TOML bundle builder doesn't fill out setuptools.packages properly) closed by
- fixed: Should be …
- 1:45 PM Ticket #15857 (Index out of range updating header sequence) created by
- […]
- 1:28 PM Ticket #15854 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 bug, crash in _NSViewHierarchyDidChangeBackingProperties. …
- 1:15 PM Ticket #15853 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 bug, crash in displayConfigFinalizedProc. Either plugging …
- 1:13 PM Ticket #15852 (Crash moving window between screens) closed by
- duplicate: Mac Qt 6.6 bug, crash in _NSViewHierarchyDidChangeBackingProperties.
- 1:12 PM Ticket #15849 (Morph: index out of bounds) closed by
- duplicate: Fixed. Duplicate of #15747, trying to morph using a previous morph.
- 1:08 PM Ticket #15856 (Opening PAE json file: not AlphaFold predicted aligned error data, ...) closed by
- fixed
- 1:03 PM Ticket #15856 (Opening PAE json file: not AlphaFold predicted aligned error data, ...) created by
- […]
- 11:45 AM Ticket #15855 (QKeyEvent handled as drop) closed by
- can't reproduce: The type() call on the event returned Drop, despite being a QKeyEvent.
- 11:07 AM Ticket #15855 (QKeyEvent handled as drop) created by
- […]
- 11:01 AM Ticket #15854 (Crash on Mac waking from sleep) created by
- […]
- 9:13 AM Ticket #15853 (Crash on Mac waking from sleep) created by
- […]
- 8:54 AM Ticket #15851 (Crash in garbage collection) closed by
- duplicate
- 8:41 AM Ticket #15848 (Crash in event loop) closed by
- can't reproduce: Hi Moon, Thanks for reporting this problem. It's not really clear …
- 5:17 AM Ticket #15852 (Crash moving window between screens) created by
- […]
- 3:35 AM Ticket #15851 (Crash in garbage collection) created by
- […]
- 2:16 AM Ticket #15850 (TOML bundle builder doesn't fill out setuptools.packages properly) created by
- When building arrays to double check that bundle builder's new …
Aug 29, 2024:
- 7:58 PM ChangeLog edited by
- (diff)
- 7:07 PM Ticket #15849 (Morph: index out of bounds) created by
- […]
- 6:53 PM Ticket #15848 (Crash in event loop) created by
- […]
- 6:32 PM Ticket #15847 (Graphics crash, macOS 13.6.9, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 4:23 PM Ticket #15840 (addh slow) closed by
- fixed: Some recent-ish code in Residue.add_atom() to possibly adjust …
- 4:22 PM Ticket #15847 (Graphics crash, macOS 13.6.9, Intel UHD Graphics 617) created by
- […]
- 3:38 PM Ticket #15846 (How can the ChimeraX VR coordinates be aligned for 2-person VR with ...) created by
- In the past a two person VR meeting with both headsets in the same …
- 3:17 PM Ticket #15844 (RE: Bug and unable to report) closed by
- can't reproduce: I'm not sure what you mean by "ChimeraX -1.8 is unable to show the …
- 3:13 PM Ticket #15842 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 3:12 PM Ticket #15841 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties, …
- 3:06 PM Ticket #15845 (Test) closed by
- not a bug: Testing bug reporting (really website availability)
- 2:24 PM 2024-8-29 edited by
- (diff)
- 2:23 PM Ticket #15845 (Test) created by
- […]
- 2:18 PM Ticket #15844 (RE: Bug and unable to report) created by
- […] [[Image(...)]] [[Image(...)]]
- 2:07 PM Ticket #15836 (Crash on Mac waking from sleep) closed by
- duplicate: Qt 6.6 bug. Crash in _NSViewHierarchyDidChangeBackingProperties.
- 1:54 PM NIAID2024 edited by
- (diff)
- 1:33 PM NIAID2024 edited by
- (diff)
- 11:12 AM Ticket #15843 (RFE: xml2toml function in bundle builder) created by
- It would be good if bundle builder could use bundle_builder_toml for …
- 10:52 AM Ticket #15835 (Issue Launching ChimeraX) closed by
- nonchimerax: The ChimeraX crash is very likely caused by your current broken …
- 10:50 AM Ticket #15839 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') closed by
- duplicate
- 10:48 AM Ticket #15838 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') closed by
- duplicate: Hi Jae-Hun, Thanks for reporting this problem. It is fixed in the …
- 10:45 AM Ticket #15837 ('MarkedHistogram' object has no attribute '_min_val') closed by
- duplicate: Hi Peter, Thanks for reporting this problem. It has been fixed in …
- 10:44 AM Ticket #15826 (patchelf not found on certain Linii) closed by
- fixed: Zach fixed this.
- 8:54 AM phenix-8-26-24 edited by
- (diff)
- 6:57 AM Ticket #15842 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by
- […]
- 6:34 AM Ticket #15841 (Crash on Mac waking from sleep) created by
- […]
- 4:10 AM Ticket #15840 (addh slow) created by
- […]
- 12:28 AM Ticket #15839 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') created by
- […]
Aug 28, 2024:
- 11:29 PM Ticket #15838 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') created by
- […]
- 4:26 PM Ticket #10036 (Add programming documentation on how to include PyPi dependencies in a ...) closed by
- fixed: Added an explicit mention of declaring dependencies on PyPi packages …
- 2:46 PM Ticket #15837 ('MarkedHistogram' object has no attribute '_min_val') created by
- […]
- 1:22 PM Ticket #15836 (Crash on Mac waking from sleep) created by
- […]
- 10:56 AM Ticket #15835 (Issue Launching ChimeraX) created by
- […] [[Image(...)]] [[Image(...)]]
- 9:13 AM Ticket #15834 (Crash in garbage collection) closed by
- duplicate
- 9:12 AM Ticket #15833 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 7:40 AM Ticket #15834 (Crash in garbage collection) created by
- […]
- 12:22 AM Ticket #15833 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 27, 2024:
- 1:06 PM Ticket #15559 (Crash opening mmCIF) closed by
- can't reproduce: No response from bug submitter. Need problematic mmCIF file to …
- 12:38 PM Ticket #15832 (Arg sidechains) created by
- […]
- 10:16 AM Ticket #15829 (color radial: ArrayMemoryError) closed by
- limitation: Trying to allocate 233 Mbyte numpy array of 10 million vertex …
- 10:10 AM Ticket #15827 (Volume Viewer menu) closed by
- not a bug: The Volume Viewer panel does not have menus except for the context …
- 9:55 AM Dev20249-2 created by
- 9:54 AM 2024-8-29 created by
- 9:53 AM DeveloperMeetings edited by
- (diff)
- 9:17 AM Ticket #15830 (Crash in python_instances_of_class) closed by
- duplicate: Hi Yoan, Thanks for reporting this problem. We believe it is fixed …
- 6:55 AM Ticket #15831 (SEQCROW: Buried Volume: cannot convert float NaN to integer) created by
- […]
- 6:02 AM Ticket #15830 (Crash in python_instances_of_class) created by
- […]
- 5:13 AM Ticket #15829 (color radial: ArrayMemoryError) created by
- […]
- 3:54 AM Ticket #15828 (ISOLDE: addh step of sim start: z_align endpoints must be distinct) created by
- […]
- 12:03 AM Ticket #15827 (Volume Viewer menu) created by
- […] Volume Viewer_Screenshot 2024-08-27 025252.png
Aug 26, 2024:
- 4:24 PM Ticket #15826 (patchelf not found on certain Linii) created by
- Namely on Flatpak and Ubuntu 20.04 -- and it only fails on the …
- 4:21 PM Ticket #15825 (Add a PDB and AlphaFold database sequence search using RCSB mmseqs2) created by
- It might be useful to add a PDB and AlphaFold database sequence search …
- 3:59 PM Dev2024-8-26 edited by
- (diff)
- 2:19 PM phenix-8-26-24 edited by
- (diff)
- 2:19 PM phenix-8-26-24 edited by
- (diff)
- 2:16 PM phenix-8-26-24 edited by
- (diff)
- 2:14 PM phenix-8-26-24 edited by
- (diff)
- 2:14 PM phenix-8-26-24 edited by
- (diff)
- 1:53 PM Ticket #15824 (Unable to Install Chimerax on Ubuntu 24.04 due to Package Dependencies) created by
- […] Screenshot from 2024-08-26 13-44-53.png
- 1:38 PM phenix-8-26-24 edited by
- (diff)
- 12:10 PM phenix-8-26-24 created by
- 12:10 PM Features edited by
- (diff)
- 11:54 AM Ticket #15822 (Map data: invalid value encountered in multiply) closed by
- duplicate: There are two problems here. The "invalid value encountered in …
- 11:44 AM Ticket #15823 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:35 AM Ticket #15821 (Save mmCIF: 'Residue' object has no attribute 'display') closed by
- duplicate: Hi Disha, Thanks for reporting this problem. It is fixed in the …
- 11:30 AM Ticket #15820 (Bad silhouette outlines) closed by
- duplicate: This is a bug in Apple's Intel graphics driver specific to your …
- 11:28 AM Ticket #15818 (Graphics crash, macOS 14.6.1, AMD Radeon Pro 5300M, in OpenMM) closed by
- duplicate: Duplicate of #15817, same reporter.
- 11:25 AM Ticket #15817 (Graphics crash, macOS 14.6.1, AMD Radeon Pro 5300M, in OpenMM) closed by
- nonchimerax: Crashed in Apple AMD graphics driver using OpenMM with ISOLDE.
- 11:15 AM Ticket #15819 (No space left on device saving settings) closed by
- nonchimerax
- 2:05 AM Ticket #15823 (MemoryError opening mmCIF files) created by
- […]
Aug 25, 2024:
- 5:40 AM Ticket #15822 (Map data: invalid value encountered in multiply) created by
- […]
- 3:54 AM Ticket #15821 (Save mmCIF: 'Residue' object has no attribute 'display') created by
- […]
Aug 24, 2024:
- 5:38 AM Ticket #15820 (Bad silhouette outlines) created by
- […] Screenshot 2024-08-12 at 14.15.01.png
- 3:55 AM Ticket #15819 (No space left on device saving settings) created by
- […]
- 2:42 AM Ticket #15818 (Graphics crash, macOS 14.6.1, AMD Radeon Pro 5300M, in OpenMM) created by
- […]
- 2:31 AM Ticket #15817 (Graphics crash, macOS 14.6.1, AMD Radeon Pro 5300M, in OpenMM) created by
- […]
Aug 23, 2024:
- 11:25 AM Ticket #15815 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') closed by
- fixed: Fix: …
- 10:56 AM Ticket #15816 (Crash on Mac waking from sleep) closed by
- duplicate: Crash connecting or disconnecting an external display or waking from …
- 7:52 AM Ticket #15816 (Crash on Mac waking from sleep) created by
- […]
Aug 22, 2024:
- 8:37 PM Ticket #15815 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') created by
- […]
- 3:51 PM Ticket #15814 (ToolInstance.bundle_info is None) created by
- […]
- 3:45 PM Ticket #15805 (ScholAR: bad function declaration) closed by
- fixed: Schol-AR tool will work on ChimeraX versions 1.4+.
- 3:44 PM Ticket #15724 (ChimeraX installed in non-ASCII path on Windows cannot execute al2co) closed by
- can't reproduce: This is a Model Archive #5601 type structure apparently, and opening …
- 3:15 PM Ticket #15812 (AlphaFold Error Plot: listdir: Operation not permitted) closed by
- nonchimerax: ChimeraX did not have permission to list the AlphaFold results …
- 3:12 PM Ticket #15809 (Crash repositioning window (dual display)) closed by
- duplicate: This crash is due to a bug in the Qt window toolkit used by ChimeraX. …
- 2:47 PM Ticket #15813 (Wheel not installing out of bundle dist dir) created by
- […] ChimeraX_ScholAR-0.3.3-py3-none-any.whl
- 2:25 PM Ticket #15812 (AlphaFold Error Plot: listdir: Operation not permitted) created by
- […]
- 2:18 PM Ticket #15811 (Session save: No bundle information for chimerax.core.tasks.Tasks) created by
- […]
- 2:13 PM Ticket #15479 (Could not save clashes to non-ASCII file path) closed by
- fixed: Not a non-ASCII problem -- the folder doesn't exist. Now open_output …
- 12:54 PM Ticket #15810 (RFE: convenient if "color fromatom" could work on atom/residue labels) created by
- As per chimerax-users exchange …
- 12:53 PM 2024-8-22 edited by
- (diff)
- 12:44 PM Ticket #15809 (Crash repositioning window (dual display)) created by
- […]
- 12:34 PM Ticket #15808 (JSON from Mol 2.0 desktop version) closed by
- nonchimerax: Your problems are all with getting proper JSON output from MOLE, not …
- 10:50 AM Ticket #15807 (Graphics crash, macOS 14.5, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:12 AM Ticket #15808 (JSON from Mol 2.0 desktop version) created by
- Hi Elaine, The desktop version provides an XML file. I converted …
- 10:08 AM Ticket #15806 (testing attachments going to email2trac) closed by
- not a bug
- 8:54 AM Ticket #15807 (Graphics crash, macOS 14.5, Intel Iris Plus Graphics) created by
- […]
- 8:43 AM Ticket #15806 (testing attachments going to email2trac) created by
- […] test_image.png
- 7:31 AM Ticket #15805 (ScholAR: bad function declaration) created by
- […]
- 4:09 AM Ticket #15804 (Log cannot restore session state) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
