'AtomicStructure' object has no attribute '_alt_loc_changes_handler'

[jae-hun.jeoung@…]

The following bug report has been submitted:
Platform:        macOS-14.6.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Traceback (most recent call last):   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149, in invoke     return self._func(self._name, data)            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb     self.destroy()   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/altlocs.py", line 172, in destroy     alt_loc_s._alt_loc_changes_handler.remove()     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'AtomicStructure' object has no attribute '_alt_loc_changes_handler' Error processing trigger "remove models": AttributeError: 'AtomicStructure' object has no attribute '_alt_loc_changes_handler' File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/altlocs.py", line 172, in destroy alt_loc_s._alt_loc_changes_handler.remove() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. Traceback (most recent call last):   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 1156, in <lambda>     close_action.triggered.connect(lambda *, s=self, sess=session: s.file_close_cb(sess))                                                                    ^^^^^^^^^^^^^^^^^^^^^   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 806, in file_close_cb     run(session, 'close session')   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49, in run     results = command.run(text, log=log, return_json=return_json)               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3213, in run     result = ci.function(session, **kw_args)              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/close.py", line 71, in close_session     session.reset()   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py", line 552, in reset     sm.reset_state(container, self)   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/altlocs.py", line 356, in reset_state     self.destroy()   File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/altlocs.py", line 172, in destroy     alt_loc_s._alt_loc_changes_handler.remove()     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'AtomicStructure' object has no attribute '_alt_loc_changes_handler' AttributeError: 'AtomicStructure' object has no attribute '_alt_loc_changes_handler' File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/altlocs.py", line 172, in destroy alt_loc_s._alt_loc_changes_handler.remove() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. 

Log:
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/cxs/v2/E53D_FeFe-O2.cxs
> format session

Log from Thu Aug 29 08:27:18 2024UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> surface cap true

Log from Wed Aug 28 16:09:12 2024 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  

> camera ortho

> cofr centerOfView

> volume defaultvalues limitVoxelCount false voxelLimitForPlane
> 1000000000000000 voxelLimitForOpen 1000000000000000 saveSettings true

Saved volume settings  

> mousemode rightMode clip

> mousemode alt rightMode "contour level"

> mousemode alt leftMode "move picked models"

> alias cofron cofr centerofview showpivot true

> alias cofroff cofr centerofview showpivot false

> alias symclip cofr centerofview; clip near -$1 far $1 position cofr

> alias cootmode surface cap false; surface style solid; lighting flat;
> graphics silhouettes false; style stick; ~rib; color ##num_residues gold;
> color byhet ; disp; ~disp @H*; style solvent ball; size ballscale 0.1; size
> stickradius 0.07; transparency 70; cofr centerofview; clip near -10 far 10
> position cofr; color ##~num_residues cornflower blue

> alias cootmode_mesh surface cap false; surface style mesh; lighting flat;
> graphics silhouettes false; style stick; ~rib; color ##num_residues gold;
> color byhet ; disp; ~disp @H*; style solvent ball; size ballscale 0.1; size
> stickradius 0.07; cofr centerofview; clip near -10 far 10 position cofr;
> color ##~num_residues #3d60ffff; transparency 50

> alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1;
> disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp
> ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1

> alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp
> @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius
> 0.1

> alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000;
> marker #10000 position cofr; sel ~sel; surface zone ##~num_residues
> nearAtoms sel distance 15; close #10000

> alias map_unsphere surface unzone ##~num_residues

> alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5;
> lighting soft

> alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker
> #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel
> distance 0; close #10000

> alias showmaps surface unzone ##~num_residues

> alias caps_off surface cap false

> alias caps_on surface cap true

> alias selbetween ks ri

> buttonpanel Shortcuts rows 3 columns 4

> buttonpanel Shortcuts add Vol_Viewer command "tool show 'Volume Viewer'"

> buttonpanel Shortcuts add Model_Panel command "tool show Models"

> buttonpanel Shortcuts add Log command "tool show Log"

> buttonpanel Shortcuts add default_disp command default_mol_display

> buttonpanel Shortcuts add map_sphere command map_sphere_15

> buttonpanel Shortcuts add map_unsphere command map_unsphere

> buttonpanel Shortcuts add cofron command cofron

> buttonpanel Shortcuts add cofroff command cofroff

> buttonpanel Shortcuts add cootmode command cootmode

> buttonpanel Shortcuts add mark_cofr command "marker #10000 position cofr"

> buttonpanel Shortcuts add hidemaps command hidemaps

> buttonpanel Shortcuts add showmaps command showmaps

UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/model_maps/v2/E53D+O2/E53D_FeFe-O2.pdb

Chain information for E53D_FeFe-O2.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
98 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> altlocs show

> altlocs hide

> color @Fe gray(80)

> color C darkgreen atoms

> color N blue atoms

> color O red atoms

> color @Fe tomato

> color C gray(80) atoms

> color N blue atoms

> color O red atoms

> color @Fe maroon

> set bgColor white

> graphics silhouettes true

> color C gray(90) atoms

> color C gray(10) atoms

> color C gray(20) atoms

> color C gray(30) atoms

> hide H

> select #!1/A:56@ND1

1 atom, 1 residue, 1 model selected  

> select add #!1/C:4@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE2

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE1

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> hide cartoons

> select clear

> select #!1/B:126@OE2

1 atom, 1 residue, 1 model selected  

> select add #!1/C:4@FE

2 atoms, 2 residues, 1 model selected  

> hide cartoons

> bond sel

Created 1 bond  

> select #!1/B:126@OE1

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/B:201@O2

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/B:201@O1

1 atom, 1 residue, 1 model selected  

> select add #!1/C:4@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/A:53@OD1

1 atom, 1 residue, 1 model selected  

> select add #!1/C:4@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/B:129@ND1

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/S:855@O

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/B:92@OE2

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select clear

Drag select of 82 atoms, 72 bonds  

> hide sel

> select add #!1/A:53@CG

83 atoms, 72 bonds, 14 residues, 1 model selected  

> select add #!1/A:53@CB

84 atoms, 72 bonds, 14 residues, 1 model selected  

> select add #!1/A:53@CA

85 atoms, 72 bonds, 14 residues, 1 model selected  

> hide @C,N,O

> color sel gold

> select clear

> undo

[Repeated 3 time(s)]

> select add #!1/S:855@O

86 atoms, 72 bonds, 15 residues, 1 model selected  

> select subtract #!1/A:53@CB

85 atoms, 72 bonds, 15 residues, 1 model selected  

> select subtract #!1/A:53@CG

84 atoms, 72 bonds, 15 residues, 1 model selected  

> select subtract #!1/A:53@CA

83 atoms, 72 bonds, 14 residues, 1 model selected  

> hide @C,N,O

> show sel

> select subtract #!1/S:855@O

82 atoms, 72 bonds, 13 residues, 1 model selected  

> hide sel

> select clear

> select add #!1/A:53@CG

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@CB

2 atoms, 1 residue, 1 model selected  

> select add #!1/A:53@CA

3 atoms, 1 residue, 1 model selected  

> select up

12 atoms, 11 bonds, 1 residue, 1 model selected  

> select down

3 atoms, 1 residue, 1 model selected  

> color sel gold

> select clear

> select #!1/A:53@OD1

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/A ASP 53 OD1 and /C FE 3 FE: 2.655Å  

> select #!1/A:53@OD2

1 atom, 1 residue, 1 model selected  

> select add #!1/S:855@O

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/A ASP 53 OD2 and /S HOH 855 O: 2.466Å  

> select #!1/B:95@OE1

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O2

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/B GLU 95 OE1 and PER 201 O2: 2.638Å  

> hide #2.1 models

> size stickRadius 0.1

Changed 4764 bond radii  

> size stickRadius 0.2

Changed 4764 bond radii  

> size pseudobondRadius 0.02

Changed 3 pseudobond radii  

> size pseudobondRadius 0.05

Changed 3 pseudobond radii  

> hide sel

> show sel

> select clear

[Repeated 1 time(s)]

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:92@OE2

2 atoms, 2 residues, 1 model selected  

> unbond sel

Unknown command: unbond sel  

> ~bond sel

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/S:855@O

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O2

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:126@OE1

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select subtract #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:129@ND1

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select add #!1/C:3@FE

3 atoms, 3 residues, 1 model selected  

> ~bond sel

> select add #!1/B:201@O1

4 atoms, 4 residues, 1 model selected  

> select add #!1/C:4@FE

5 atoms, 5 residues, 1 model selected  

> select subtract #!1/B:129@ND1

4 atoms, 4 residues, 1 model selected  

> ~bond sel

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@OD1

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE1

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE2

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:126@OE2

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:56@ND1

2 atoms, 2 residues, 1 model selected  

> ~bond sel

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:129@ND1

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 3 FE and /B HIS 129 ND1: 2.404Å  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:92@OE2

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 3 FE and /B GLU 92 OE2: 2.248Å  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:126@OE1

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 3 FE and /B GLU 126 OE1: 1.803Å  

> select #!1/B:126@OE2

1 atom, 1 residue, 1 model selected  

> select add #!1/C:4@FE

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/B GLU 126 OE2 and /C FE 4 FE: 2.103Å  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O1

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 4 FE and /B PER 201 O1: 2.260Å  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O2

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 3 FE and /B PER 201 O2: 1.993Å  

> select add #!1/A:20@OE2

3 atoms, 3 residues, 1 model selected  

> distance sel

Expected exactly two atoms and/or measurable objects (e.g. axes, planes), or
one or more measurable objects and one or more atoms, got 3 atoms and 0
measurable objects  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE2

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 4 FE and /A GLU 20 OE2: 2.347Å  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE1

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 4 FE and /A GLU 20 OE1: 2.260Å  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:56@ND1

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 4 FE and /A HIS 56 ND1: 2.255Å  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@OD1

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance between E53D_FeFe-O2.pdb #!1/C FE 4 FE and /A ASP 53 OD1: 2.090Å  

> size psudobondradius 0.05

Expected a keyword  

> size pseudobondRadius 0.05

Changed 13 pseudobond radii  

> color sel halfbond true

> style sel dashes 0

Changed 1 pseudobond dash  

> style sel dashes 7

Changed 1 pseudobond dash  

> select clear

[Repeated 1 time(s)]

> style sel dashes 0

Changed 1 pseudobond dash  

> select clear

> size sel pseudobondRadius 0.03

Changed 1 pseudobond radii  

> size sel pseudobondRadius 0.2

Changed 1 pseudobond radii  

> style sel dashes 7

Changed 1 pseudobond dash  

> select clear

> select up

13 pseudobonds, 1 model selected  

> select down

1 pseudobond, 1 model selected  

> hide pseudobonds

> select add #!1/S:855@O

1 atom, 1 pseudobond, 1 residue, 2 models selected  

> select add #!1/C:3@FE

2 atoms, 1 pseudobond, 2 residues, 2 models selected  

> select add #!1/C:4@FE

3 atoms, 1 pseudobond, 3 residues, 2 models selected  

> style sel sphere

Changed 3 atom styles  

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> size sel atomRadius 0.6

Changed 1 atom radii  

> size sel atomRadius 0.5

Changed 1 atom radii  

> size @Fe atomRadius 2.5

Changed 4 atom radii  

> size @Fe atomRadius 0.8

Changed 4 atom radii  

> size @Fe atomRadius 0.6

Changed 4 atom radii  

> size @Fe atomRadius 0.7

Changed 4 atom radii  

> select clear

> select add #!1/B:201@O1

1 atom, 1 residue, 1 model selected  

> select add #!1/B:95@OE1

2 atoms, 2 residues, 1 model selected  

> select add #!1/A:20@OE1

3 atoms, 3 residues, 1 model selected  

> select add #!1/A:56@ND1

4 atoms, 4 residues, 1 model selected  

> select add #!1/A:53@CB

5 atoms, 5 residues, 1 model selected  

> select add #!1/B:126@OE1

6 atoms, 6 residues, 1 model selected  

> select add #!1/B:92@OE1

7 atoms, 7 residues, 1 model selected  

> select up

91 atoms, 85 bonds, 7 residues, 1 model selected  

> style sel ball

Changed 91 atom styles  

> select up

93 atoms, 86 bonds, 8 residues, 1 model selected  

> select up

95 atoms, 88 bonds, 8 residues, 1 model selected  

> select up

108 atoms, 102 bonds, 8 residues, 1 model selected  

> style sel ball

Changed 108 atom styles  

> size sel ballScale 0.2

Changed 1 ball scales  

> size sel ballScale 0.1

Changed 1 ball scales  

> size sel ballScale 0.15

Changed 1 ball scales  

> size sel stickRadius 0.15

Changed 102 bond radii  

> size sel ballScale 0.13

Changed 1 ball scales  

> size sel ballScale 0.12

Changed 1 ball scales  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:92@OE2

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> size sel stickRadius 0.15

Changed 1 bond radii  

> size sel stickRadius 0.1

Changed 1 bond radii  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:129@ND1

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/S:855@O

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:126@OE1

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O2

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select add #!1/B:201@O1

3 atoms, 2 residues, 1 model selected  

> select add #!1/C:4@FE

4 atoms, 3 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@OD1

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE1

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:20@OE2

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/A:56@ND1

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:4@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/B:126@OE2

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 1 bond  

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/S:855@O

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 0 bonds  

> select clear

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> select add #!1/S:855@O

2 atoms, 2 residues, 1 model selected  

> bond sel

Created 0 bonds  

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> style sel stick

Changed 1 atom style  

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> style sel ball

Changed 1 atom style  

> size sel ballScale 0.12

Changed 1 ball scales  

> size sel ballScale 0.5

Changed 1 ball scales  

> size sel ballScale 0.12

Changed 1 ball scales  

> style sel ball

Changed 1 atom style  

> style sel sphere

Changed 1 atom style  

> style sel ball

Changed 1 atom style  

> size sel ballScale 0.2

Changed 1 ball scales  

> size sel ballScale 0.12

Changed 1 ball scales  

> style sel sphere

Changed 1 atom style  

> select clear

> size sel stickRadius 0.1

Changed 10 bond radii  

> size sel stickRadius 0.0.05

Invalid "stickRadius" argument: Expected a number >= 0 or a +/- delta  

> size sel stickRadius 0.05

Changed 10 bond radii  

> select clear

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> style sel stick

Changed 1 atom style  

> size sel stickRadius 0.05

Changed 1 bond radii  

> select clear

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> size sel ballScale 0.15

Changed 1 ball scales  

> size sel ballScale 0.12

Changed 1 ball scales  

> size sel ballScale 0.11

Changed 1 ball scales  

> select clear

[Repeated 2 time(s)]

> select add #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@OD2

2 atoms, 2 residues, 1 model selected  

> distance sel

Distance already exists; modify distance properties with 'distance style'  

> show #2.1 models

> hide #2.1 models

> show pseudobonds

> size sel pseudobondRadius 0.03

Changed 3 pseudobond radii  

> size sel pseudobondRadius 0.08

Changed 3 pseudobond radii  

> size sel pseudobondRadius 0.05

Changed 3 pseudobond radii  

> color sel cyan pseudobonds

> color C forestgreen atoms

> color C darkgreen atoms

> select clear

> select add #!1/B:201@O2

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O1

2 atoms, 1 residue, 1 model selected  

> size sel ballScale 0.2

Changed 1 ball scales  

> size sel ballScale 0.11

Changed 1 ball scales  

> select clear

> material dull

> lighting shadows true ambientIntensity 0.6

> graphics silhouettes true width 5

> graphics silhouettes true width 3

> graphics silhouettes true width 4

> select add #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> style sel sphere

Changed 1 atom style  

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> select add #!1/C:3@FE

2 atoms, 2 residues, 1 model selected  

> style sel ball

Changed 2 atom styles  

> undo

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> style sel ball

Changed 1 atom style  

> select clear

> graphics silhouettes true width 5

> color @Fe gray(30)

> select #!1/A:53@CB

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@CG

2 atoms, 1 residue, 1 model selected  

> select add #!1/A:53@CA

3 atoms, 1 residue, 1 model selected  

> color sel gold

> select clear

> save
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/cxs/v2/E53D_FeFe-O2.cxs

——— End of log from Wed Aug 28 16:09:12 2024 ———

opened ChimeraX session  

> hide pivot

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> select clear

> cofr frontCenter

> ~cofr

> show pibot false

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> showpivot false

Unknown command: showpivot false  

> cofr showPivot false

> lighting soft

> lighting full

> lighting soft

> lighting flat

> lighting soft

> lighting simple

> lighting soft

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

17 atoms, 17 bonds, 1 residue, 1 model selected  

> size sel stickRadius 0.1

Changed 17 bond radii  

> size sel stickRadius 0.08

Changed 17 bond radii  

> select add #!1/B:129@ND1

18 atoms, 17 bonds, 2 residues, 1 model selected  

> select add #!1/B:92@OE2

19 atoms, 17 bonds, 3 residues, 1 model selected  

> select add #!1/A:20@CD

20 atoms, 19 bonds, 4 residues, 1 model selected  

> select up

24 atoms, 19 bonds, 6 residues, 1 model selected  

> select up

94 atoms, 90 bonds, 6 residues, 1 model selected  

> size sel stickRadius 0.08

Changed 91 bond radii  

> size sel ballScale 0.09

Changed 1 ball scales  

> select add #!1/S:855@O

95 atoms, 91 bonds, 7 residues, 1 model selected  

> select clear

> select #!1/S:855@O

1 atom, 1 residue, 1 model selected  

> style sel ball

Changed 1 atom style  

> ui tool show "Selection Inspector"

> size sel atomRadius 0.51

Changed 1 atom radii  

> size sel atomRadius 0.52

Changed 1 atom radii  

> size sel atomRadius 0.53

Changed 1 atom radii  

> size sel atomRadius 0.54

Changed 1 atom radii  

> size sel atomRadius 0.55

Changed 1 atom radii  

> size sel atomRadius 0.8

Changed 1 atom radii  

> size sel atomRadius 2

Changed 1 atom radii  

> size sel atomRadius 3

Changed 1 atom radii  

> select clear

> setattr =sel p halfbond true

Assigning halfbond attribute to 3 items  

> setattr =sel p halfbond false

Assigning halfbond attribute to 3 items  

> setattr =sel p display false

Assigning display attribute to 3 items  

> setattr =sel p display true

Assigning display attribute to 3 items  

> select add #!1/C:4@FE

1 atom, 3 pseudobonds, 1 residue, 2 models selected  

> select add #!1/C:3@FE

2 atoms, 3 pseudobonds, 2 residues, 2 models selected  

> size sel atomRadius 0.69

Changed 2 atom radii  

> size sel atomRadius 0.5

Changed 2 atom radii  

> select clear

> select add #!1/A:53@CB

1 atom, 1 residue, 1 model selected  

> select #!1/A:56@CG

1 atom, 1 residue, 1 model selected  

> select add #!1/A:53@CB

2 atoms, 2 residues, 1 model selected  

> select add #!1/A:20@OE1

3 atoms, 3 residues, 1 model selected  

> select add #!1/B:126@CB

4 atoms, 4 residues, 1 model selected  

> select add #!1/B:92@OE2

5 atoms, 5 residues, 1 model selected  

> select add #!1/B:129@CB

6 atoms, 6 residues, 1 model selected  

> select add #!1/B:95@OE2

7 atoms, 7 residues, 1 model selected  

> select up

106 atoms, 101 bonds, 7 residues, 1 model selected  

> size sel stickRadius 0.08

Changed 101 bond radii  

> size sel ballScale 0.08

Changed 1 ball scales  

> size sel ballScale 0.07

Changed 1 ball scales  

> select clear

> select add #!1/B:201@O1

1 atom, 1 residue, 1 model selected  

> select add #!1/B:201@O2

2 atoms, 1 residue, 1 model selected  

> size sel atomRadius 1.8

Changed 2 atom radii  

> size sel atomRadius 2

Changed 2 atom radii  

> size sel atomRadius 3

Changed 2 atom radii  

> select clear

[Repeated 1 time(s)]

> size sel stickRadius 0.02

Changed 9 bond radii  

> setattr =sel p display false

Assigning display attribute to 2 items  

> select clear

> setattr =sel p display false

Assigning display attribute to 1 item  

> setattr =sel p display false

Assigning display attribute to 1 item  

> setattr =sel p display false

Assigning display attribute to 1 item  

> select clear

> setattr =sel p display false

Assigning display attribute to 2 items  

> setattr =sel p display false

Assigning display attribute to 2 items  

> setattr =sel p display false

Assigning display attribute to 1 item  

> size sel stickRadius 0.02

Changed 2 bond radii  

> select clear

> size pseudobondRadius 0.03

Changed 13 pseudobond radii  

> ui tool show "Side View"

> save
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/images/v2/E53D_FeFe-O2.png
> width 1430 height 1462 supersample 3 transparentBackground true

[Repeated 2 time(s)]

> save
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/cxs/v2/E53D_FeFe-O2.cxs

——— End of log from Thu Aug 29 08:27:18 2024 ———

opened ChimeraX session  

> color @Fe dimgray

> select #!1/C:3@FE

1 atom, 1 residue, 1 model selected  

> color @Fe gray(40)

> color @Fe gray(50)

> color @Fe gray(60)

> color @Fe gray(70)

> color @Fe gray(80)

> select clear

> color C seagreen atoms

> color C 0,42,0 atoms

> color C 0,40,0 atoms

> color C 0,45,0 atoms

> color C 0,47,0 atoms

> color C 1,45,0 atoms

> color C 1,45,10 atoms

> color C 10,45,10 atoms

> color C 10,70,10 atoms

> color C 10,50,10 atoms

> color C 10,60,10 atoms

> color C 10,55,10 atoms

> color C 10,60,10 atoms

> color O darkred atoms

> color O 75,0,0 atoms

> ui tool show "Selection Inspector"

> size sel stickRadius 0.01

Changed 11 bond radii  

> select clear

> select add #!1/A:53@CG

1 atom, 1 bond, 1 residue, 1 model selected  

> select add #!1/A:53@CB

2 atoms, 1 bond, 1 residue, 1 model selected  

> select add #!1/A:53@CA

3 atoms, 1 bond, 1 residue, 1 model selected  

> color sel 100,70,0

> color sel 90,70,0

> color sel 70,80,0

> color sel 90,60,0

> select clear

> save
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/cxs/v2/E53D_FeFe-O2.cxs

> save
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/images/v2/E53D_FeFe-O2.png
> width 1430 height 1462 supersample 3 transparentBackground true

[Repeated 1 time(s)]

> save
> /Users/adminjh/Documents/ChimeraX/SulE/SulE_MB_202x/cxs/v2/E53D_FeFe-O2.cxs

> close session

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 301, in _models_closed_cb  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
Error processing trigger "remove models":  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1156, in <lambda>  
close_action.triggered.connect(lambda *, s=self, sess=session:
s.file_close_cb(sess))  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 806, in file_close_cb  
run(session, 'close session')  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/close.py", line 71, in close_session  
session.reset()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 552, in reset  
sm.reset_state(container, self)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 356, in reset_state  
self.destroy()  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
AttributeError: 'AtomicStructure' object has no attribute
'_alt_loc_changes_handler'  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/std_commands/altlocs.py", line 172, in destroy  
alt_loc_s._alt_loc_changes_handler.remove()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M2
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,7
      Model Number: Z16R000QGD/A
      Chip: Apple M2
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 24 GB
      System Firmware Version: 10151.140.19
      OS Loader Version: 10151.140.19

Software:

    System Software Overview:

      System Version: macOS 14.6.1 (23G93)
      Kernel Version: Darwin 23.6.0
      Time since boot: 9 days, 23 hours, 44 minutes

Graphics/Displays:

    Apple M2:

      Chipset Model: Apple M2
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U3223QE:
          Resolution: 6016 x 3384
          UI Looks like: 3008 x 1692 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.23.1
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.8
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.3.7
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    MolecularDynamicsViewer: 1.4
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    Send2Trash: 1.8.3
    SEQCROW: 1.8.12
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11