wiki:phenix-8-26-24

Version 1 (modified by pett, 14 months ago) ( diff )

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Phenix

  • Made a release on the Toolshed
  • Added citation widgets to tool interfaces
  • Next tool is probably ligand fitting

Fit Loops

  • Link to "select" help
  • Sequence input file needs to be FASTA
  • Revised tool interface text
  • Colorized table entries
  • Raised warning/not-allowed thresholds to 15/20 residues

ChimeraX completed

  • Select By Attribute
  • Improved interface behavior for integer histograms
  • Espaloma may be able to be used directly
  • Label missing segments with number of residues
  • Replace residues
  • Have ViewDockX columns sort numerically when appropriate
  • Have shown altlocs respond to altloc deletion and hydrogen addition
  • Allow C++ layer to emit status messages
  • Fixed (YA) garbage-collection crash
  • Update chain sequence
  • Handle deleted UniProt entries
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