![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 15 months ago
Closed 15 months ago
#15852 closed defect (duplicate)
Crash moving window between screens
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.5-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001fea8cc00 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree (total: 58)
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{
"uptime" : 18000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 1339,
"osVersion" : {
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"build" : "23F79",
"releaseType" : "User"
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"captureTime" : "2024-08-30 14:17:51.0109 +0200",
"codeSigningMonitor" : 1,
"incident" : "B318FB84-1AD3-46B6-A205-02606DFA04D8",
"pid" : 6388,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-08-30 14:17:21.4682 +0200",
"procStartAbsTime" : 449563058059,
"procExitAbsTime" : 450271490240,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"AFD4C665-57CF-5E66-939F-C1317475F940","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "30492E88-BE55-51F6-475C-E82A6DE93EED",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"sip" : "enabled",
"vmRegionInfo" : "0x70c11ced9e48 is not in any region. Bytes after previous region: 18419989454409 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_NANO 600040000000-600060000000 [512.0M] rw-\/rwx SM=PRV \n---> \n UNUSED SPACE AT END",
"exception" : {"codes":"0x0000000000000001, 0x000070c11ced9e48","rawCodes":[1,123974716333640],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x000070c11ced9e48"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":6388},
"vmregioninfo" : "0x70c11ced9e48 is not in any region. Bytes after previous region: 18419989454409 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_NANO 600040000000-600060000000 [512.0M] rw-\/rwx SM=PRV \n---> \n UNUSED SPACE AT END",
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"faultingThread" : 0,
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"uuid" : "05b44e93-dffc-3bd8-90ab-fd97cb73f171",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
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"arch" : "arm64e",
"base" : 6824652800,
"size" : 32744,
"uuid" : "d5bbfc31-d52a-37d6-a41b-48638113ad4c",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
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"arch" : "arm64e",
"base" : 6884253696,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20172800,
"uuid" : "61f710be-9132-3cc2-883d-066365fba1ad",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.60.105"
},
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"arch" : "arm64e",
"base" : 6820741120,
"size" : 559640,
"uuid" : "37bbc384-0755-31c7-a808-0ed49e44dd8e",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
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"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
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"source" : "P",
"arch" : "arm64e",
"base" : 6824869888,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5083136,
"uuid" : "84b539d5-22c9-3f8c-84c8-903e9c7b8d29",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2503.1"
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"size" : 577528,
"uuid" : "ec33cd83-7098-3ad6-82c8-bc03ac81e87b",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
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"sharedCache" : {
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"uuid" : "3406ad1b-2469-30eb-9863-5dce861e6dea"
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/pfefferlab/Desktop/CM1_revision_1.cxs
Opened run_class001 (1).mrc as #1, grid size 128,128,128, pixel 5.08, shown at
level 0.278, step 1, values float32
Opened GCP23_CM1.pdb map 10 as #3, grid size 55,50,68, pixel 3.33, shown at
level 0.0571, step 1, values float32
Opened copy of GCP23_CM1.pdb map 10 as #6, grid size 55,51,68, pixel 3.33,
shown at level 0.0554, step 1, values float32
Opened run_class001 (1).mrc 0 as #9.1, grid size 128,128,128, pixel 5.08,
shown at level 0.25, step 1, values float32
Opened run_class001 (1).mrc 1 as #9.2, grid size 128,128,128, pixel 5.08,
shown at level 0.306, step 1, values float32
Opened run_class001 (1).mrc 2 as #9.3, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 3 as #9.4, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 4 as #9.5, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 5 as #9.6, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Log from Fri Aug 30 13:47:56 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/pfefferlab/Desktop/CM1_revision_1.cxs
Opened run_class001 (1).mrc as #1, grid size 128,128,128, pixel 5.08, shown at
level 0.235, step 1, values float32
Opened GCP23_CM1.pdb map 10 as #3, grid size 55,50,68, pixel 3.33, shown at
level 0.0571, step 1, values float32
Opened copy of GCP23_CM1.pdb map 10 as #6, grid size 55,51,68, pixel 3.33,
shown at level 0.0554, step 1, values float32
Opened run_class001 (1).mrc 0 as #9.1, grid size 128,128,128, pixel 5.08,
shown at level 0.25, step 1, values float32
Opened run_class001 (1).mrc 1 as #9.2, grid size 128,128,128, pixel 5.08,
shown at level 0.306, step 1, values float32
Opened run_class001 (1).mrc 2 as #9.3, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 3 as #9.4, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 4 as #9.5, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 5 as #9.6, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Log from Thu Aug 29 11:27:54 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/pfefferlab/Desktop/CM1_revision_1.cxs
Opened run_class001 (1).mrc as #1, grid size 128,128,128, pixel 5.08, shown at
level 0.235, step 1, values float32
Opened GCP23_CM1.pdb map 10 as #3, grid size 55,50,68, pixel 3.33, shown at
level 0.0571, step 1, values float32
Opened copy of GCP23_CM1.pdb map 10 as #6, grid size 55,51,68, pixel 3.33,
shown at level 0.0554, step 1, values float32
Opened run_class001 (1).mrc 0 as #8.1, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 1 as #8.2, grid size 128,128,128, pixel 5.08,
shown at level 0.474, step 1, values float32
Opened run_class001 (1).mrc 2 as #8.3, grid size 128,128,128, pixel 5.08,
shown at level 0.101, step 1, values float32
Opened run_class001 (1).mrc 3 as #8.4, grid size 128,128,128, pixel 5.08,
shown at level 0.15, step 1, values float32
Opened run_class001 (1).mrc 4 as #8.5, grid size 128,128,128, pixel 5.08,
shown at level 0.202, step 1, values float32
Opened run_class001 (1).mrc 5 as #8.6, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Log from Wed Aug 28 17:14:39 2024 Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle
> alias af open alphafold:$1
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/pfefferlab/Downloads/run_class001 (1).mrc"
Opened run_class001 (1).mrc as #1, grid size 128,128,128, pixel 5.08, shown at
level 0.373, step 1, values float32
> volume #1 level 0.1361
> volume #1 level 0.2325
> open /Users/pfefferlab/Desktop/GCP23_CM1.pdb
Chain information for GCP23_CM1.pdb #2
---
Chain | Description
M | No description available
S | No description available
T | No description available
V | No description available
W | No description available
m t | No description available
Drag select of 13333 atoms, 48 pseudobonds, 60 bonds
> hide sel atoms
> show sel cartoons
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.86949,-0.35348,-0.34502,846.83,0.1861,0.4126,-0.8917,378.35,0.45755,-0.83953,-0.29297,480.89
> view matrix models
> #2,-0.78527,-0.56003,0.26404,674.38,-0.44457,0.21318,-0.87001,640.2,0.43095,-0.80057,-0.41637,519.86
> view matrix models
> #2,-0.96043,-0.22451,0.16486,679.17,-0.16443,-0.020716,-0.98617,642.58,0.22482,-0.97425,-0.01702,506.63
> view matrix models
> #2,-0.9647,0.16981,-0.20128,696.39,0.25704,0.44094,-0.85994,336.27,-0.05728,-0.88133,-0.46902,725.86
> view matrix models
> #2,-0.90481,0.18593,-0.38309,730.52,0.42549,0.43047,-0.79602,260.37,0.016905,-0.88325,-0.46861,700.72
> view matrix models
> #2,-0.86151,0.21916,-0.458,731.24,0.50583,0.44863,-0.7368,208.82,0.043996,-0.86643,-0.49735,696.34
> view matrix models
> #2,-0.90489,0.21239,-0.36887,719.03,0.42562,0.46125,-0.77852,246.62,0.0047893,-0.86147,-0.50778,711.9
> view matrix models
> #2,-0.91725,0.12665,-0.37764,748.5,0.38415,0.5318,-0.75473,234.75,0.10524,-0.83735,-0.53645,680.36
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.91725,0.12665,-0.37764,688.87,0.38415,0.5318,-0.75473,314.08,0.10524,-0.83735,-0.53645,640.3
> view matrix models
> #2,-0.91725,0.12665,-0.37764,715.39,0.38415,0.5318,-0.75473,335.8,0.10524,-0.83735,-0.53645,657.21
> hide #!1 models
> select clear
> select #2/t/m/T/M
12048 atoms, 12171 bonds, 38 pseudobonds, 1852 residues, 2 models selected
> ui tool show "Fit in Map"
Opened GCP23_CM1.pdb map 10 as #3, grid size 55,50,68, pixel 3.33, shown at
level 0.0571, step 1, values float32
> fitmap sel inMap #1 resolution 10 metric correlation
Fit map GCP23_CM1.pdb map 10 in map run_class001 (1).mrc using 9577 points
correlation = 0.915, correlation about mean = 0.3624, overlap = 1607
steps = 56, shift = 9.82, angle = 13.2 degrees
Position of GCP23_CM1.pdb map 10 (#3) relative to run_class001 (1).mrc (#1)
coordinates:
Matrix rotation and translation
-0.89406490 -0.08233926 -0.44030468 781.59552794
0.35290364 0.47590538 -0.80558866 386.70852709
0.27587494 -0.87563366 -0.39643247 557.12731153
Axis -0.08328924 -0.85159609 0.51753938
Axis point 292.66446969 0.00000000 496.09849470
Rotation angle (degrees) 155.13431222
Shift along axis -106.08264302
Average map value = 0.788 for 12048 atoms, 4 outside contour
> transparency #1 70
> set bgColor white
> graphics silhouettes true
> volume #1 level 0.2711
> volume #1 level 0.2601
> volume #1 level 0.2463
> volume #1 level 0.2353
> color #2/V hot pink
> color #2/W aquamarine
> select /W:102
5 atoms, 4 bonds, 1 residue, 1 model selected
> select add /W:505
10 atoms, 8 bonds, 2 residues, 1 model selected
> select add /W:11
15 atoms, 12 bonds, 3 residues, 1 model selected
> select up
225 atoms, 222 bonds, 45 residues, 1 model selected
> select up
240 atoms, 237 bonds, 48 residues, 1 model selected
> select up
775 atoms, 766 bonds, 155 residues, 1 model selected
> select down
240 atoms, 237 bonds, 48 residues, 1 model selected
> color sel dark slate grey
> hide pseudobonds
> select clear
> select /S:17
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
90 atoms, 89 bonds, 18 residues, 1 model selected
> select up
95 atoms, 94 bonds, 19 residues, 1 model selected
> select up
200 atoms, 198 bonds, 40 residues, 1 model selected
> delete sel
> select clear
> color #2/M aquamarine
> color #2/T cornfloweer
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #2/T cornflowerblue
> color #2/t/m gold
> select clear
> select /W:110
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
60 atoms, 59 bonds, 12 residues, 1 model selected
> select up
65 atoms, 64 bonds, 13 residues, 1 model selected
> select up
775 atoms, 766 bonds, 155 residues, 1 model selected
> select down
65 atoms, 64 bonds, 13 residues, 1 model selected
> color sel aquamarine
> select clear
[Repeated 1 time(s)]
> select /W:703
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
80 atoms, 79 bonds, 16 residues, 1 model selected
> select up
85 atoms, 84 bonds, 17 residues, 1 model selected
> select up
775 atoms, 766 bonds, 155 residues, 1 model selected
> select down
85 atoms, 84 bonds, 17 residues, 1 model selected
> color sel dark slate grey
> select clear
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #2 distance 100
> color zone #1 near #2 distance 50
[Repeated 2 time(s)]
> color single #1
> combine #2/t/m/T/M
[Repeated 1 time(s)]
> select add #4
13133 atoms, 13245 bonds, 47 pseudobonds, 2069 residues, 2 models selected
> select subtract #4
Nothing selected
> select add #4
13133 atoms, 13245 bonds, 47 pseudobonds, 2069 residues, 2 models selected
> view matrix models
> #4,-0.89406,-0.082339,-0.4403,820.93,0.3529,0.47591,-0.80559,333.18,0.27587,-0.87563,-0.39643,631.59
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.60373,-0.4835,-0.63383,888.54,-0.037508,0.81143,-0.58325,307.77,0.79631,-0.32835,-0.50802,345.99
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.60373,-0.4835,-0.63383,884.21,-0.037508,0.81143,-0.58325,311.25,0.79631,-0.32835,-0.50802,352.8
> view matrix models
> #4,-0.60373,-0.4835,-0.63383,882.62,-0.037508,0.81143,-0.58325,312.58,0.79631,-0.32835,-0.50802,354.93
> select subtract #4
Nothing selected
> select add #5
13133 atoms, 13245 bonds, 47 pseudobonds, 2069 residues, 2 models selected
> view matrix models
> #5,-0.89406,-0.082339,-0.4403,830.97,0.3529,0.47591,-0.80559,414.26,0.27587,-0.87563,-0.39643,480.81
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.57119,0.54664,-0.61232,611.55,0.70494,-0.055449,-0.70709,399.99,-0.42048,-0.83553,-0.35368,695.89
> view matrix models
> #5,-0.63048,0.64873,-0.42619,544.96,0.574,0.020048,-0.81861,461.45,-0.52252,-0.76075,-0.38501,721.61
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.63048,0.64873,-0.42619,558.18,0.574,0.020048,-0.81861,450.4,-0.52252,-0.76075,-0.38501,722.31
> ui tool show "Fit in Map"
Opened copy of GCP23_CM1.pdb map 10 as #6, grid size 55,51,68, pixel 3.33,
shown at level 0.0554, step 1, values float32
> fitmap #5 inMap #1 resolution 10 metric correlation
Fit map copy of GCP23_CM1.pdb map 10 in map run_class001 (1).mrc using 10613
points
correlation = 0.8738, correlation about mean = 0.1674, overlap = 1213
steps = 68, shift = 12.1, angle = 13.1 degrees
Position of copy of GCP23_CM1.pdb map 10 (#6) relative to run_class001 (1).mrc
(#1) coordinates:
Matrix rotation and translation
-0.58971490 0.77127803 -0.23951313 446.34672743
0.50299180 0.11873189 -0.85609695 462.58732082
-0.63185092 -0.62532626 -0.45796450 759.99027481
Axis 0.43677004 0.74256135 -0.50777414
Axis point 162.95905479 0.00000000 503.77347107
Rotation angle (degrees) 164.68184296
Shift along axis 152.54693665
Average map value = 0.5447 for 13133 atoms, 886 outside contour
> select subtract #5
Nothing selected
> select add #4
13133 atoms, 13245 bonds, 47 pseudobonds, 2069 residues, 2 models selected
> view matrix models
> #4,-0.60373,-0.4835,-0.63383,878.03,-0.037508,0.81143,-0.58325,305.05,0.79631,-0.32835,-0.50802,354.35
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.52211,-0.68669,-0.50582,861.52,-0.026432,0.60582,-0.79516,423.59,0.85247,-0.40179,-0.33446,297.96
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.52211,-0.68669,-0.50582,852.7,-0.026432,0.60582,-0.79516,428.95,0.85247,-0.40179,-0.33446,289.45
> fitmap #4 inMap #1 resolution 10 metric correlation
Fit map copy of GCP23_CM1.pdb map 10 in map run_class001 (1).mrc using 10613
points
correlation = 0.8943, correlation about mean = 0.2828, overlap = 1664
steps = 84, shift = 8.79, angle = 12.1 degrees
Position of copy of GCP23_CM1.pdb map 10 (#6) relative to run_class001 (1).mrc
(#1) coordinates:
Matrix rotation and translation
-0.38207317 -0.77227608 -0.50755271 824.72621024
0.07112021 0.52301992 -0.84934803 443.96161173
0.92139134 -0.36061035 -0.14490745 191.84274001
Axis 0.28254685 -0.82609475 0.48758049
Axis point 414.59508322 0.00000000 518.33342204
Rotation angle (degrees) 120.13110550
Shift along axis -40.19179094
Average map value = 0.7478 for 13133 atoms, 703 outside contour
> select clear
> hide #!2 models
> select clear
> hide #!1 models
Drag select of 53 residues
> select up
935 atoms, 925 bonds, 187 residues, 1 model selected
> select up
980 atoms, 970 bonds, 196 residues, 1 model selected
> select up
1085 atoms, 1074 bonds, 217 residues, 1 model selected
> select up
13133 atoms, 13245 bonds, 2069 residues, 1 model selected
> select down
1085 atoms, 1074 bonds, 217 residues, 1 model selected
> delete sel
Drag select of 68 residues
> select up
875 atoms, 866 bonds, 175 residues, 1 model selected
> select up
920 atoms, 911 bonds, 184 residues, 1 model selected
> select up
1085 atoms, 1074 bonds, 217 residues, 1 model selected
> select up
13133 atoms, 13245 bonds, 2069 residues, 1 model selected
> select down
1085 atoms, 1074 bonds, 217 residues, 1 model selected
> delete sel
Drag select of 3700 residues
> color sel #A9A9A9
> color #1 #A9A9A9
> show #!2 models
> select clear
Drag select of 595 residues
> select up
4738 atoms, 4765 bonds, 775 residues, 1 model selected
> select up
6904 atoms, 6981 bonds, 1059 residues, 1 model selected
> select up
7074 atoms, 7146 bonds, 1082 residues, 1 model selected
> select up
9894 atoms, 10013 bonds, 1471 residues, 1 model selected
> select up
9959 atoms, 10077 bonds, 1481 residues, 1 model selected
> select up
10587 atoms, 10713 bonds, 1576 residues, 1 model selected
> select up
10609 atoms, 10733 bonds, 1580 residues, 1 model selected
> select up
11175 atoms, 11302 bonds, 1685 residues, 1 model selected
> select up
11185 atoms, 11311 bonds, 1687 residues, 1 model selected
> select up
11502 atoms, 11628 bonds, 1751 residues, 1 model selected
> select up
11571 atoms, 11694 bonds, 1765 residues, 1 model selected
> select up
11641 atoms, 11764 bonds, 1779 residues, 1 model selected
> select up
12048 atoms, 12171 bonds, 1852 residues, 1 model selected
> select up
13133 atoms, 13245 bonds, 2069 residues, 1 model selected
> select down
12048 atoms, 12171 bonds, 1852 residues, 1 model selected
> color sel #A9A9A9
> select clear
> ui tool show "Color Zone"
> combine #2#4#5
Remapping chain ID 'M' in copy of GCP23_CM1.pdb #4 to 'N'
Remapping chain ID 'T' in copy of GCP23_CM1.pdb #4 to 'U'
Remapping chain ID 'm' in copy of GCP23_CM1.pdb #4 to 'n'
Remapping chain ID 't' in copy of GCP23_CM1.pdb #4 to 'u'
Remapping chain ID 'M' in copy of GCP23_CM1.pdb #5 to 'O'
Remapping chain ID 'T' in copy of GCP23_CM1.pdb #5 to 'X'
Remapping chain ID 'm' in copy of GCP23_CM1.pdb #5 to 'o'
Remapping chain ID 't' in copy of GCP23_CM1.pdb #5 to 'v'
> color zone #1 near #7 distance 50
> color zone #1 near #7 distance 51
> color zone #1 near #7 distance 51.42
> color zone #1 near #7 distance 222.41
> color zone #1 near #7 distance 60.53
> color zone #1 near #7 distance 71.2
> color zone #1 near #7 distance 10
> color zone #1 near #7 distance 100
[Repeated 2 time(s)]
> volume splitbyzone #1
Opened run_class001 (1).mrc 0 as #8.1, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 1 as #8.2, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 2 as #8.3, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 3 as #8.4, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 4 as #8.5, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 5 as #8.6, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
> hide #!2 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8.1 models
> hide #!8.2 models
> hide #!4 models
> hide #!5 models
> show #!8.1 models
> hide #!8.6 models
> show #!8.2 models
> hide #!8.2 models
> hide #!8.1 models
> volume #8.3 level 0.1009
> volume #8.4 level 0.1504
> volume #8.5 level 0.16
> volume #8.5 level 0.202
> show #!1 models
> transparency #8.3-5 60
> hide #!1 models
> show #!2 models
> show #!8.1 models
> ui tool show "Volume Viewer"
> hide #!8.1 models
> show #!8.2 models
> volume #8.2 level 0.4736
> save /Users/pfefferlab/Desktop/CM1_revision_1.cxs includeMaps true
——— End of log from Wed Aug 28 17:14:39 2024 ———
opened ChimeraX session
> close #8.2
> select clear
> show #!4 models
> show #!5 models
Drag select of 746 residues
> select #4
12048 atoms, 12171 bonds, 38 pseudobonds, 1852 residues, 2 models selected
> color #4 #a9a9a9
> color #5 #a9a9a9
> select clear
[Repeated 1 time(s)]
> close #8
> open
> /Users/pfefferlab/Desktop/fold_2024_08_28_16_54/fold_2024_08_28_16_54_model_0.cif
Chain information for fold_2024_08_28_16_54_model_0.cif #8
---
Chain | Description
A B | .
C | .
D | .
E | .
F G | .
> matchmaker #8/C to #2/M
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker GCP23_CM1.pdb, chain M (#2) with fold_2024_08_28_16_54_model_0.cif,
chain C (#8), sequence alignment score = 3649.4
RMSD between 501 pruned atom pairs is 1.146 angstroms; (across all 538 pairs:
1.326)
> select clear
> select add #8
25151 atoms, 25629 bonds, 3151 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> select clear
> select #8/A/B
2314 atoms, 2332 bonds, 282 residues, 1 model selected
> select ~sel & ##selected
22837 atoms, 23297 bonds, 2869 residues, 1 model selected
> hide sel cartoons
> color #8/A/B
> color #8/A/B white
> select clear
> hide #!4 models
> hide #!5 models
> show #!7 models
Drag select of 1733 residues
> select up
14636 atoms, 14687 bonds, 2341 residues, 2 models selected
> select up
21204 atoms, 21381 bonds, 3295 residues, 2 models selected
> select up
21750 atoms, 21920 bonds, 3371 residues, 2 models selected
> select up
25609 atoms, 25846 bonds, 3931 residues, 2 models selected
> select down
21750 atoms, 21920 bonds, 3371 residues, 2 models selected
> color sel #a9a9a9
> select clear
> ui tool show "Color Zone"
> color zone #1 near #2 distance 5.08
> color zone #1 near #7 distance 5.08
> show #!1 models
> color zone #1 near #7 distance 92.06
> color zone #1 near #7 distance 92.25
> color zone #1 near #7 distance 92.44
> color zone #1 near #7 distance 92.63
> color zone #1 near #8 distance 92.63
> color zone #1 near #7 distance 92.63
> color zone #1 near #7 distance 92.06
> color zone #1 near #7 distance 130.94
> color zone #1 near #7 distance 10
> color zone #1 near #7 distance 100
[Repeated 1 time(s)]
> volume splitbyzone #1
Opened run_class001 (1).mrc 0 as #9.1, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 1 as #9.2, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 2 as #9.3, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 3 as #9.4, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 4 as #9.5, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
Opened run_class001 (1).mrc 5 as #9.6, grid size 128,128,128, pixel 5.08,
shown at level 0.235, step 1, values float32
> volume #9.1 level 0.2505
> transparency 60
> transparency 50
> show #!9.2 models
> transparency #9.2 0
> volume #9.2 level 0.309
> volume #9.2 level 0.1332
> volume #9.2 level 0.3062
> graphics silhouettes depthJump 0.005
> view name front
> save /Users/pfefferlab/Desktop/image27.png supersample 3
> hide #!9 models
> show #!1 models
> transparency #1 0
> save /Users/pfefferlab/Desktop/image28.png supersample 3
> ui tool show "Side View"
> lighting depthCue false
> graphics silhouettes depthJump 0.1
> graphics silhouettes depthJump 0.2
> graphics silhouettes depthJump 0.05
> save /Users/pfefferlab/Desktop/image29.png supersample 3
> hide #!1 models
> show #!9 models
> save /Users/pfefferlab/Desktop/image30.png supersample 3
> save /Users/pfefferlab/Desktop/CM1_revision_1.cxs includeMaps true
——— End of log from Thu Aug 29 11:27:54 2024 ———
opened ChimeraX session
> show #!1 models
> hide #!9 models
> color #8 pink
> volume #1 level 0.2835
> volume #1 level 0.2211
> ui tool show "Hide Dust"
> surface dust #1 size 30.48
> lighting depthCueStart 0.8
> lighting depthCueStart 0.8 depthCueEnd 1
> lighting depthCueStart 0.2 depthCueEnd 1
> lighting depthCueStart 0.2 depthCueEnd 1 depthCue true
> lighting depthCueStart 0.1 depthCueEnd 1 depthCue true
> lighting depthCueStart 0.3 depthCueEnd 1 depthCue true
> ui tool show "Side View"
> graphics silhouettes width 1
> graphics silhouettes width 2
> graphics silhouettes width 1
> graphics silhouettes width 1 depthJump 0.1
> graphics silhouettes width 1 depthJump 0.05
> graphics silhouettes width 1 depthJump 0.01
> graphics silhouettes width 1 depthJump 0.02
> graphics silhouettes width 1 depthJump 0.03
> graphics silhouettes width 1 depthJump 0.02
> hide #!7 models
> hide #!2 models
> show #!2 models
> select #2/M/T
7211 atoms, 7291 bonds, 17 pseudobonds, 1111 residues, 2 models selected
> hide sel cartoons
> select clear
> volume #1 level 0.241
> volume #1 level 0.2296
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting full
> lighting simple
> lighting full
> lighting shadows false
> save /Users/pfefferlab/Desktop/image60.png supersample 3
> volume #1 level 0.275
> volume #1 level 0.2892
> volume #1 level 0.3232
> save /Users/pfefferlab/Desktop/image61.png supersample 3
> volume #1 level 0.2807
> save /Users/pfefferlab/Desktop/image62.png supersample 3
> volume #1 level 0.2495
> volume #1 level 0.2637
> volume #1 level 0.2778
> save /Users/pfefferlab/Desktop/image63.png supersample 3
> save /Users/pfefferlab/Desktop/CM1_revision_1.cxs includeMaps true
——— End of log from Fri Aug 30 13:47:56 2024 ———
opened ChimeraX session
> volume #1 level 0.2353
> volume #1 level 0.1984
> ui tool show "Side View"
> volume #1 level 0.1332
> volume #1 level 0.2154
===== Log before crash end =====
Log:
> alias af open alphafold:$1
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: Z15G0007SD/A
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 10151.121.1
OS Loader Version: 10151.121.1
Software:
System Software Overview:
System Version: macOS 14.5 (23F79)
Kernel Version: Darwin 23.5.0
Time since boot: 5 hours, 13 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
VW246:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 15 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between screens |
comment:2 by , 15 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Mac Qt 6.6 bug, crash in _NSViewHierarchyDidChangeBackingProperties.