Map data: invalid value encountered in multiply

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\arrays.py:155: RuntimeWarning: invalid value
encountered in multiply  
v = fbc + b * bsize # Center of bin where rank crossed.  
C:\Program Files\ChimeraX\bin\lib\site-packages\numpy\core\\_methods.py:180:
RuntimeWarning: overflow encountered in reduce  
ret = umr_sum(arr, axis, dtype, out, keepdims, where=where)  
C:\Program Files\ChimeraX\bin\lib\site-packages\numpy\core\\_methods.py:180:
RuntimeWarning: invalid value encountered in reduce  
ret = umr_sum(arr, axis, dtype, out, keepdims, where=where)  
C:\Program Files\ChimeraX\bin\lib\site-packages\numpy\core\\_methods.py:213:
RuntimeWarning: overflow encountered in reduce  
arrmean = umr_sum(arr, axis, dtype, keepdims=True, where=where)  
C:\Program Files\ChimeraX\bin\lib\site-packages\numpy\core\\_methods.py:213:
RuntimeWarning: invalid value encountered in reduce  
arrmean = umr_sum(arr, axis, dtype, keepdims=True, where=where)  
C:\Program Files\ChimeraX\bin\lib\site-packages\numpy\core\\_methods.py:233:
RuntimeWarning: invalid value encountered in subtract  
x = asanyarray(arr - arrmean)  
Opened a008.rec as #1.1.1, grid size 2048,2048,800, pixel 9.89,9.89,9.89,
shown at level nan, step 1, values float32  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage3D,  
pyArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArguments = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
)  
)  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py", line 254, in _draw_scene  
draw_transparent(r, transparent_drawings)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1547, in draw_transparent  
r.draw_transparent(  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 1252, in draw_transparent  
draw()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1549, in <lambda>  
lambda: _draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1555, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 783, in draw  
pd = self._update_planes(renderer)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 548, in _update_planes  
pd = self._update_3d_texture_planes(view_dir)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 600, in _update_3d_texture_planes  
pd = self._texture_3d_planes()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 610, in _texture_3d_planes  
pd = Texture3dPlanes(self)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 1147, in __init__  
self._fill_textures()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 1243, in _fill_textures  
t.reload_texture(td, now = True)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 3073, in reload_texture  
self.fill_opengl_texture()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 3083, in fill_opengl_texture  
self.initialize_texture(size, format, iformat, tdtype, ncomp, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2969, in initialize_texture  
GL.glTexImage3D(gl_target, 0, iformat, size[0], size[1], size[2],  
File "src/latebind.pyx", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/wrapper.pyx", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\OpenGL\platform\baseplatform.py", line 415, in __call__  
return self( *args, **named )  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage3D,  
pyArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArguments = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
)  
)  
  
Exception ignored in: <function Drawing.__del__ at 0x000002CC52025B80>  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1205, in __del__  
self.delete()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1225, in delete  
raise RuntimeError("Don't have opengl context needed to delete texture from
drawing '%s' because drawing was never drawn" % self.name)  
RuntimeError: Don't have opengl context needed to delete texture from drawing
'Image3D 3d texture planes' because drawing was never drawn  
Exception ignored in: <function Texture.__del__ at 0x000002CC68AA8CA0>  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 3034, in __del__  
raise OpenGLError('OpenGL texture was not deleted before graphics.Texture
destroyed')  
chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before
graphics.Texture destroyed  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2728, in update_cb  
s.update_histogram(rm, m, rz, delay = 0)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2750, in update_histogram  
counts = s.bin_counts(bins)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\arrays.py", line 121, in bin_counts  
b0 = int(ceil(fb0))  
ValueError: cannot convert float NaN to integer  
  
ValueError: cannot convert float NaN to integer  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\arrays.py", line 121, in bin_counts  
b0 = int(ceil(fb0))  
  
See log for complete Python traceback.  
  

> graphics restart

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage3D,  
pyArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArguments = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
)  
)  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py", line 254, in _draw_scene  
draw_transparent(r, transparent_drawings)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1547, in draw_transparent  
r.draw_transparent(  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 1252, in draw_transparent  
draw()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1549, in <lambda>  
lambda: _draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1555, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 783, in draw  
pd = self._update_planes(renderer)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 548, in _update_planes  
pd = self._update_3d_texture_planes(view_dir)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 600, in _update_3d_texture_planes  
pd = self._texture_3d_planes()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 610, in _texture_3d_planes  
pd = Texture3dPlanes(self)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 1147, in __init__  
self._fill_textures()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\image3d.py", line 1243, in _fill_textures  
t.reload_texture(td, now = True)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 3073, in reload_texture  
self.fill_opengl_texture()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 3083, in fill_opengl_texture  
self.initialize_texture(size, format, iformat, tdtype, ncomp, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2969, in initialize_texture  
GL.glTexImage3D(gl_target, 0, iformat, size[0], size[1], size[2],  
File "src/latebind.pyx", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/wrapper.pyx", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage3D,  
pyArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArgs = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
),  
cArguments = (  
GL_TEXTURE_3D,  
0,  
GL_R32F,  
2048,  
2048,  
800,  
0,  
GL_RED,  
GL_FLOAT,  
array([[[-1.51963615e+00, -1.39747477e+00, 1.33579779e+00, ...,  
1.36840987e+00, -1.75941110e+00, -2.100152...,  
)  
)  
  
Exception ignored in: <function Drawing.__del__ at 0x000002CC52025B80>  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1205, in __del__  
self.delete()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1225, in delete  
raise RuntimeError("Don't have opengl context needed to delete texture from
drawing '%s' because drawing was never drawn" % self.name)  
RuntimeError: Don't have opengl context needed to delete texture from drawing
'Image3D 3d texture planes' because drawing was never drawn  
Exception ignored in: <function Texture.__del__ at 0x000002CC68AA8CA0>  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 3034, in __del__  
raise OpenGLError('OpenGL texture was not deleted before graphics.Texture
destroyed')  
chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before
graphics.Texture destroyed  




OpenGL version: 3.3.0 NVIDIA 560.70
OpenGL renderer: Quadro M4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: MSI
Model: MS-7A21
OS: Microsoft Windows 10 专业版 (Build 19045)
Memory: 34,250,162,176
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-6800K CPU @ 3.40GHz
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    pandas: 2.2.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pyarrow: 17.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.5.8
    superqt: 0.6.7
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0

[pett]

Not sure is this a map_data or an ArtiaX problem. If you think it's ArtiaX, change the "component" to "Third Party" and reassign to "artiax".

[Tom Goddard]

There are two problems here. The "invalid value encountered in multiply" I think has been fixed and is caused by opening a map of more than 2 Gvoxels (some signed int was being used in a C++ calculation of min/max values that caused a NaN return value).

The second problem is ArtiaX tries to create a 2048 x 2048 x 800 OpenGL 3D texture to match the map size and that is too large and the OpenGL call fails. This has arisen in several other tickets and I don't know ArtiaX has fixed this by avoiding creating such large 3D textures or at least catching the error and reporting a sensible error message so the user can deal with it.