![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 14 months ago
Closed 14 months ago
#15836 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.3.1-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 270000,
"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac14,10",
"coalitionID" : 3374,
"osVersion" : {
"train" : "macOS 14.3.1",
"build" : "23D60",
"releaseType" : "User"
},
"captureTime" : "2024-08-28 13:22:50.2021 -0700",
"codeSigningMonitor" : 1,
"incident" : "A7730E15-1768-423C-B139-7AF08FF5ECED",
"pid" : 31268,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-08-28 10:04:15.0580 -0700",
"procStartAbsTime" : 6347192863808,
"procExitAbsTime" : 6633155150705,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"8293FE6F-F548-5303-9CCD-DB3725D73206","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "FA742268-FBD4-F0F3-30A1-33CFEC0719C4",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 60804,
"sleepWakeUUID" : "D49E3F4D-736C-4DE7-823C-2E02594C835E",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000002, 0x0000000000000000","rawCodes":[2,0],"type":"EXC_BREAKPOINT","signal":"SIGTRAP"},
"termination" : {"flags":0,"code":5,"namespace":"SIGNAL","indicator":"Trace\/BPT trap: 5","byProc":"exc handler","byPid":31268},
"os_fault" : {"process":"ChimeraX"},
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"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 4558834,
"uuid" : "44c36221-6308-3df3-821f-755130080968",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703503007744,
"size" : 290814,
"uuid" : "c964889c-7792-333d-93f6-8f3e51a9f4c2",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703505149952,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4825085,
"uuid" : "c1543df7-9f35-3262-b971-4326095ab776",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2303"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703687610368,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2736117,
"uuid" : "4cd47f03-ed80-3f2a-bbdf-d7af11cb4ccb",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703504490496,
"size" : 241656,
"uuid" : "3e22fb41-20e3-3568-a00b-d8e901e333bf",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703504732160,
"size" : 49152,
"uuid" : "0f6c8ecc-a9bd-39c6-9f41-a8b9159201eb",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703503867904,
"size" : 520192,
"uuid" : "2f0cc387-75b5-3526-a109-67f369b98cb3",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703520989184,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 12812276,
"uuid" : "6589cc92-b39e-392c-808b-b20538f9312f",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "2303"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703501676544,
"size" : 278515,
"uuid" : "902eb51f-373f-3aa3-b084-228ac4c1b80b",
"path" : "\/usr\/lib\/system\/libxpc.dylib",
"name" : "libxpc.dylib"
}
],
"sharedCache" : {
"base" : 140703500320768,
"size" : 21474836480,
"uuid" : "7fa563c2-7726-366b-b2f5-1c64013c6b55"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=4.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.3G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 556K 55 \nColorSync 244K 31 \nCoreAnimation 2172K 210 \nCoreGraphics 20K 4 \nCoreUI image data 5188K 41 \nFoundation 40K 2 \nKernel Alloc Once 8K 1 \nMALLOC 3.5G 133 \nMALLOC guard page 384K 24 \nMach message 24K 6 \nOpenGL GLSL 384K 4 \nRosetta Arena 4096K 2 \nRosetta Generic 1648K 409 \nRosetta IndirectBranch 2048K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 880K 88 \nRosetta Thread Context 880K 88 \nSTACK GUARD 8K 2 \nStack 157.6M 45 \nStack Guard 56.2M 43 \nVM_ALLOCATE 241.4M 437 \nVM_ALLOCATE (reserved) 256.1M 16 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 43.5M 755 \n__DATA_CONST 47.2M 425 \n__DATA_DIRTY 1705K 220 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 174.7M 162 \n__OBJC_RO 71.1M 1 \n__OBJC_RW 2170K 2 \n__TEXT 984.1M 759 \ndyld private memory 292K 4 \nmapped file 7.5G 1355 \nshared memory 3664K 31 \nunshared pmap 16.6M 11 \n=========== ======= ======= \nTOTAL 13.2G 5375 \nTOTAL, minus reserved VM space 13.0G 5375 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "776817640ff1aefea1c2b4c35e510df3f020d62d",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "632e3df958740028737bffc0",
"factorPackIds" : {
"SIRI_UNDERSTANDING_NL_OVERRIDES" : "661e78a3b714bf7f73d2b29e"
},
"deploymentId" : 240000670
},
{
"rolloutId" : "60f8ddccefea4203d95cbeef",
"factorPackIds" : {
},
"deploymentId" : 240000025
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
},
"reportNotes" : [
"PC register does not match crashing frame (0x0 vs 0x14D732944)"
]
}
===== Log before crash start =====
> camera ortho
> cofr centerOfView
> mousemode rightMode zoom
> mousemode alt rightMode "contour level"
> mousemode alt leftMode "translate selected models"
> mousemode shift leftMode "rotate selected models"
> mousemode alt control leftMode "pick blobs"
> alias cofron cofr centerofview showpivot true
> alias cofroff cofr centerofview showpivot false
> alias cootmode set bgColor black; surface cap false; surface style solid;
> lighting flat; graphics silhouettes false; style stick; ~rib; color
> ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style
> solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70;
> cofr centerofview; clip near -10 far 10 position cofr; color ##~num_residues
> cornflower blue
> alias cootmode_mesh surface cap false; surface style mesh; lighting flat;
> graphics silhouettes false; style stick; ~rib; color ##num_residues gold;
> color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size
> ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far
> 10 position cofr; color ##~num_residues #3d60ffff; transparency 50
> alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1;
> disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp
> ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1
> alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp
> @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius
> 0.1
> alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000;
> marker #10000 position cofr; sel ~sel; surface zone ##~num_residues
> nearAtoms sel distance 15; close #10000
> alias map_unsphere surface unzone ##~num_residues
> alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5;
> lighting soft
> alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker
> #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel
> distance 0; close #10000
> alias showmaps surface unzone ##~num_residues
> alias caps_off surface cap false
> alias caps_on surface cap true
> alias selbetween ks ri
> alias helix setattr $1 res is_helix true
> alias strand setattr $1 res is_strand true
> alias coil setattr $1 res is_strand false; setattr $1 res is_helix false
> alias open_vseries "open browse vseries true"
> buttonpanel Shortcuts rows 3 columns 4
> buttonpanel Shortcuts add Vol_Viewer command "tool show 'Volume Viewer'"
> buttonpanel Shortcuts add Model_Panel command "tool show Models"
> buttonpanel Shortcuts add Log command "tool show Log"
> buttonpanel Shortcuts add default_disp command default_mol_display
> buttonpanel Shortcuts add map_sphere command map_sphere_15
> buttonpanel Shortcuts add map_unsphere command map_unsphere
> buttonpanel Shortcuts add cofron command cofron
> buttonpanel Shortcuts add cofroff command cofroff
> buttonpanel Shortcuts add cootmode command cootmode
> buttonpanel Shortcuts add mark_cofr command "marker #20000 position cofr"
> buttonpanel Shortcuts add hidemaps command hidemaps
> buttonpanel Shortcuts add showmaps command showmaps
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/raop/Documents/Presentations/Postdoc RIP/Year
> 1/images/brownpgd2_newchirality2.cxs" format session
Opened TM_focused map_sharpen.mrc as #2, grid size 392,392,392, pixel 0.808,
shown at level 0.33, step 1, values float32
Opened TM-focused-3.32A-sharp.mrc as #1, grid size 392,392,392, pixel 0.808,
shown at level 0.333, step 1, values float32
Opened TM-focused-3.70A-Class1-sharp.mrc as #3, grid size 392,392,392, pixel
0.808, shown at level 0.355, step 1, values float32
Opened TM-focused-3.72A-Class2-sharp.mrc as #4, grid size 392,392,392, pixel
0.808, shown at level 0.483, step 1, values float32
Opened TM_focused map_sharpen.mrc gaussian as #6, grid size 392,392,392, pixel
0.808, shown at level 0.197, step 1, values float32
Opened TM-focused-3.32A-sharp.mrc gaussian as #7, grid size 392,392,392, pixel
0.808, shown at level 0.183, step 1, values float32
Opened volume difference.mrc as #8, grid size 392,392,392, pixel 0.808, shown
at level 0.125, step 1, values float32
Opened volume difference.mrc as #10, grid size 392,392,392, pixel 0.808, shown
at level 0.126, step 1, values float32
opened ChimeraX session
> close session
> open /Users/raop/Documents/Manuscripts/PGD2/images/PGD2_molecule_fit.pdb
> format pdb
> close session
> open
> /Users/raop/Documents/Manuscripts/PGD2/images/lipiddensity_overlay_PGD2_PS_fit3.cxs
> format session
Opened A2AR_zm_pgd2_class2.mrc as #2, grid size 392,392,392, pixel 0.808,
shown at level 0.383, step 1, values float32
Opened A2AR_zm.mrc as #3, grid size 392,392,392, pixel 0.808, shown at level
0.798, step 1, values float32
Opened TM-focused-3.32A-sharp.mrc as #5, grid size 392,392,392, pixel 0.808,
shown at level 0.445, step 1, values float32
Opened A2AR_zm_pgd2_TMfocused.mrc as #9, grid size 392,392,392, pixel 0.808,
shown at level 0.391, step 1, values float32
Opened emd_4390.map as #13, grid size 150,150,150, pixel 1.07, shown at level
0.0605, step 1, values float32
opened ChimeraX session
> show #8 models
> close session
> open "/Users/raop/Documents/Presentations/Postdoc RIP/Year
> 1/images/brownpgd2_newchirality2.cxs" format session
Opened TM_focused map_sharpen.mrc as #2, grid size 392,392,392, pixel 0.808,
shown at level 0.33, step 1, values float32
Opened TM-focused-3.32A-sharp.mrc as #1, grid size 392,392,392, pixel 0.808,
shown at level 0.333, step 1, values float32
Opened TM-focused-3.70A-Class1-sharp.mrc as #3, grid size 392,392,392, pixel
0.808, shown at level 0.355, step 1, values float32
Opened TM-focused-3.72A-Class2-sharp.mrc as #4, grid size 392,392,392, pixel
0.808, shown at level 0.483, step 1, values float32
Opened TM_focused map_sharpen.mrc gaussian as #6, grid size 392,392,392, pixel
0.808, shown at level 0.197, step 1, values float32
Opened TM-focused-3.32A-sharp.mrc gaussian as #7, grid size 392,392,392, pixel
0.808, shown at level 0.183, step 1, values float32
Opened volume difference.mrc as #8, grid size 392,392,392, pixel 0.808, shown
at level 0.125, step 1, values float32
Opened volume difference.mrc as #10, grid size 392,392,392, pixel 0.808, shown
at level 0.126, step 1, values float32
opened ChimeraX session
> color #8 #ffd70034 models
> color #9 gold
> select add #9
54 atoms, 54 bonds, 1 residue, 1 model selected
> color sel byhetero
> hide #!8 models
> select clear
> hide #!5 models
> show #!5 models
> hide #!5 models
> ui tool show "Side View"
> show #!5 models
> select add #9/A:1@H201
1 atom, 1 residue, 1 model selected
> select add #9/A:1@H203
2 atoms, 1 residue, 1 model selected
> select add #9/A:1@H191
3 atoms, 1 residue, 1 model selected
> select add #9/A:1@H192
4 atoms, 1 residue, 1 model selected
> select add #9/A:1@H181
5 atoms, 1 residue, 1 model selected
> select add #5/A:77
11 atoms, 5 bonds, 2 residues, 2 models selected
> select subtract #5/A:77
5 atoms, 1 residue, 1 model selected
> select add #9/A:1@H171
6 atoms, 1 residue, 1 model selected
> select add #9/A:1@H172
7 atoms, 1 residue, 1 model selected
> select add #9/A:1@H161
8 atoms, 1 residue, 1 model selected
> select add #9/A:1@H15
9 atoms, 1 residue, 1 model selected
> select add #9/A:1@H14
10 atoms, 1 residue, 1 model selected
> select add #9/A:1@H13
11 atoms, 1 residue, 1 model selected
> select add #9/A:1@H12
12 atoms, 1 residue, 1 model selected
> select add #9/A:1@H101
13 atoms, 1 residue, 1 model selected
> select add #9/A:1@H102
14 atoms, 1 residue, 1 model selected
> select add #14/A:1@HO3
15 atoms, 2 residues, 2 models selected
> select add #9/A:1@H8
16 atoms, 2 residues, 2 models selected
> select add #9/A:1@H71
17 atoms, 2 residues, 2 models selected
> hide sel atoms
> select add #9/A:1@H6
18 atoms, 2 residues, 2 models selected
> select add #9/A:1@H5
19 atoms, 2 residues, 2 models selected
> select add #9/A:1@H41
20 atoms, 2 residues, 2 models selected
> select add #9/A:1@H42
21 atoms, 2 residues, 2 models selected
> select add #9/A:1@H31
22 atoms, 2 residues, 2 models selected
> select add #9/A:1@H32
23 atoms, 2 residues, 2 models selected
> select add #9/A:1@H21
24 atoms, 2 residues, 2 models selected
> select add #9/A:1@HO1
25 atoms, 2 residues, 2 models selected
> hide sel atoms
> select add #9/A:1@H202
26 atoms, 2 residues, 2 models selected
> select add #9/A:1@H162
27 atoms, 2 residues, 2 models selected
> select add #9/A:1@H182
28 atoms, 2 residues, 2 models selected
> select add #9/A:1@HO5
29 atoms, 2 residues, 2 models selected
> hide sel atoms
> select add #9/A:1@H72
30 atoms, 2 residues, 2 models selected
> select add #9/A:1@H22
31 atoms, 2 residues, 2 models selected
> hide sel atoms
> color #14 gold
> select add #14
33 atoms, 2 bonds, 2 residues, 2 models selected
> color sel byhetero
> select clear
> select add #5/A:163
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select add #5/A:75
19 atoms, 18 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> select add #5/A:163@NE2
1 atom, 1 residue, 1 model selected
> select add #9/A:1@O4
2 atoms, 2 residues, 2 models selected
> ui tool show Distances
> show #!12 models
> select add #9/A:1@O1
3 atoms, 2 residues, 2 models selected
> select add #5/A:75@NE2
4 atoms, 3 residues, 2 models selected
Exactly two atoms must be selected!
> select #9/A:1@O1
1 atom, 1 residue, 1 model selected
> select add #5/A:75@NE2
2 atoms, 2 residues, 2 models selected
> distance #9/A:1@O1 #5/A:75@NE2
Distance between PGD2_updatedpos2.pdb #9/A PG2 1 O1 and Calico01-model.pdb
#5/A HIS 75 NE2: 4.291Å
> distance style decimalPlaces 2
> distance style decimalPlaces 1
> distance style color #ffd500
> distance style color #ffc600
> distance style color #ff9900
> distance style color #ff6900
> distance style color #ff5600
> distance style color #ff4b00
> distance style color #ff4400
> distance style color #ff4300
> distance style color #ff4200
> distance style color #ff4100
> distance style color #ff3f00
> distance style color #ff3e00
> distance style color #ff3d00
> distance style color #ff3e00
> distance style color #ff3f00
> distance style color #ff4700
> distance style color #ff4b00
> distance style color #ff5200
> distance style color #ff5600
> distance style color #ff5700
> distance style color #ff5900
> distance style color #ff5d00
> distance style color #ff6300
> distance style color #ff7600
> distance style color #ff8100
> distance style color #ff8200
> distance style color #ff8202
> distance style color #ff820a
> distance style color #ff820f
> distance style color #ff821d
> distance style color #ff8240
> distance style color #ff8267
> distance style color #ff8281
> distance style color #ff8293
> distance style color #ff8297
> distance style color #ff82a1
> distance style color #ff82a3
> distance style color #ff82a6
> distance style color #ff82af
> distance style color #ff82b3
> distance style color #ff82b4
> distance style color #ff82b8
> distance style color #ff82bd
> distance style color #ff82c0
> distance style color #ff82c1
> distance style color #ff82c2
> distance style color #ff82c4
> distance style color #ff82c5
> distance style color #ff82c6
> distance style color #ff82c7
> distance style color #ff82c8
> distance style color #ff82c9
> distance style color #ff82ca
> distance style color #ff82cb
> distance style color #ff82cf
> distance style color #ff82d0
> distance style color #ff82d2
> distance style color #ff82d5
> distance style color #ff82da
> distance style color #ff82db
> distance style color #ff82de
> select clear
> select #5/A:75@ND1
1 atom, 1 residue, 1 model selected
> select add #9/A:1@O1
2 atoms, 2 residues, 2 models selected
> distance #5/A:75@ND1 #9/A:1@O1
Distance between Calico01-model.pdb #5/A HIS 75 ND1 and PGD2_updatedpos2.pdb
#9/A PG2 1 O1: 3.8Å
> undo
> hide #!12 models
> show #!12 models
> ~distance #9/A:1@O1 #5/A:75@NE2
> ~distance #5/A:75@ND1 #9/A:1@O1
> ~distance #13/A:1@O3 #5/A:163@NE2
> select #9/A:1@O1
1 atom, 1 residue, 1 model selected
> select add #5/A:75@ND1
2 atoms, 2 residues, 2 models selected
> distance #9/A:1@O1 #5/A:75@ND1
Distance between PGD2_updatedpos2.pdb #9/A PG2 1 O1 and Calico01-model.pdb
#5/A HIS 75 ND1: 3.8Å
> distance style color gold
> distance style decimalPlaces 3
> ~distance #9/A:1@O1 #5/A:75@ND1
> ~distance #9/A:1@O4 #5/A:163@NE2
> select #9/A:1@O4
1 atom, 1 residue, 1 model selected
> select add #5/A:163@NE2
2 atoms, 2 residues, 2 models selected
> distance #9/A:1@O4 #5/A:163@NE2
Distance between PGD2_updatedpos2.pdb #9/A PG2 1 O4 and Calico01-model.pdb
#5/A GLN 163 NE2: 3.541Å
> select #9/A:1@O1
1 atom, 1 residue, 1 model selected
> select add #5/A:75@ND1
2 atoms, 2 residues, 2 models selected
> select #5/A:75@ND1
1 atom, 1 residue, 1 model selected
> select #5/A:75@ND1
1 atom, 1 residue, 1 model selected
> select #5/A:75@ND1
1 atom, 1 residue, 1 model selected
> select #5/A:75@ND1
1 atom, 1 residue, 1 model selected
> select #9/A:1@O1
1 atom, 1 residue, 1 model selected
> select add #5/A:75@ND1
2 atoms, 2 residues, 2 models selected
> distance #9/A:1@O1 #5/A:75@ND1
Distance between PGD2_updatedpos2.pdb #9/A PG2 1 O1 and Calico01-model.pdb
#5/A HIS 75 ND1: 3.796Å
> show #!10 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> hide #!5 models
> show #!5 models
> show #!8 models
> volume #8 level 0.06638
> ui tool show "Fit in Map"
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.02392, steps = 72
shifted from previous position = 2.63
rotated from previous position = 0.499 degrees
atoms outside contour = 1416, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985151 -0.01355130 -0.01064526 2.94801584
0.01348797 0.99989104 -0.00599791 -0.75773938
0.01072538 0.00585344 0.99992535 -4.83221537
Axis 0.32517945 -0.58637093 0.74190799
Axis point 153.20977798 268.22837495 0.00000000
Rotation angle (degrees) 1.04414696
Shift along axis -2.18210865
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.02391, steps = 44
shifted from previous position = 0.00273
rotated from previous position = 0.0197 degrees
atoms outside contour = 1414, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985477 -0.01347105 -0.01043853 2.89689705
0.01341171 0.99989362 -0.00573426 -0.79411785
0.01051467 0.00559343 0.99992908 -4.76072519
Axis 0.31538452 -0.58337734 0.74846743
Axis point 156.40983342 264.54657743 0.00000000
Rotation angle (degrees) 1.02900361
Shift along axis -2.18634089
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.02395, steps = 48
shifted from previous position = 0.0152
rotated from previous position = 0.00725 degrees
atoms outside contour = 1416, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985298 -0.01351114 -0.01055824 2.92521403
0.01345104 0.99989304 -0.00574310 -0.79976670
0.01063470 0.00560023 0.99992777 -4.76543876
Axis 0.31403167 -0.58671070 0.74642794
Axis point 156.18401484 265.22206990 0.00000000
Rotation angle (degrees) 1.03486429
Shift along axis -2.16921510
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.02394, steps = 40
shifted from previous position = 0.00213
rotated from previous position = 0.00624 degrees
atoms outside contour = 1415, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985355 -0.01347741 -0.01054694 2.91769277
0.01341628 0.99989291 -0.00584574 -0.77496926
0.01062460 0.00570338 0.99992729 -4.78225696
Axis 0.31971452 -0.58609235 0.74449875
Axis point 154.83276859 266.36202248 0.00000000
Rotation angle (degrees) 1.03490996
Shift along axis -2.17335202
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.0239, steps = 48
shifted from previous position = 0.0151
rotated from previous position = 0.0128 degrees
atoms outside contour = 1414, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985523 -0.01344120 -0.01043334 2.89085222
0.01338270 0.99989444 -0.00565708 -0.80361384
0.01050827 0.00551664 0.99992957 -4.74957292
Axis 0.31195874 -0.58466813 0.74889580
Axis point 157.60219585 264.09445089 0.00000000
Rotation angle (degrees) 1.02616323
Shift along axis -2.18526120
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.02395, steps = 48
shifted from previous position = 0.019
rotated from previous position = 0.026 degrees
atoms outside contour = 1415, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985295 -0.01348174 -0.01059854 2.92806657
0.01341784 0.99989150 -0.00607813 -0.73247429
0.01067933 0.00593503 0.99992536 -4.82358711
Axis 0.33056978 -0.58550965 0.74020408
Axis point 151.61368164 268.83094387 0.00000000
Rotation angle (degrees) 1.04114345
Shift along axis -2.17363776
> fitmap #5 inMap #8
Fit molecule Calico01-model.pdb (#5) to map volume difference.mrc (#8) using
2104 atoms
average map value = 0.02396, steps = 48
shifted from previous position = 0.0047
rotated from previous position = 0.0244 degrees
atoms outside contour = 1419, contour level = 0.066384
Position of Calico01-model.pdb (#5) relative to volume difference.mrc (#8)
coordinates:
Matrix rotation and translation
0.99985089 -0.01358992 -0.01065409 2.95638996
0.01353006 0.99989238 -0.00567077 -0.82595391
0.01073001 0.00552577 0.99992716 -4.76221735
Axis 0.30839235 -0.58899427 0.74698053
Axis point 157.14154113 264.81398071 0.00000000
Rotation angle (degrees) 1.04015128
Shift along axis -2.15907347
> volume #8 level 0.1652
> volume #8 level 0.1423
> hide #!10 models
> hide #!8 models
> ~distance #9/A:1@O1 #5/A:75@ND1
> ~distance #9/A:1@O4 #5/A:163@NE2
> distance #9/A:1@O1 #5/A:75@ND1
Distance between PGD2_updatedpos2.pdb #9/A PG2 1 O1 and Calico01-model.pdb
#5/A HIS 75 ND1: 3.789Å
> select #9/A:1@O4
1 atom, 1 residue, 1 model selected
> select add #5/A:163@NE2
2 atoms, 2 residues, 2 models selected
> distance #9/A:1@O4 #5/A:163@NE2
Distance between PGD2_updatedpos2.pdb #9/A PG2 1 O4 and Calico01-model.pdb
#5/A GLN 163 NE2: 3.224Å
> distance style decimalPlaces 2
> distance style decimalPlaces 1
> distance style color #ffd702
> distance style color #ffd715
> distance style color #ffd784
> distance style color #ffd7ab
> distance style color #ffd7b9
> distance style color #ffd7bf
> distance style color #ffd7c5
> distance style color #ffd7cc
> distance style color #ffd7dc
> distance style color #ffd7dd
> distance style color #ffd7de
> distance style color #ffd7df
> distance style color #ffd7e0
> distance style color #ffd7e1
> distance style color #ffd7e2
> distance style color #ffd7e4
> distance style color #ffd7e6
> distance style color #ffd7e7
> distance style color #ffd7e8
> distance style color #ffd6e8
> distance style color #ffd2e8
> distance style color #ffbae8
> distance style color #fface8
> distance style color #ffa7e8
> distance style color #ff9ce8
> distance style color #ff9be8
> distance style color #ff9ae8
> distance style color #ff95e8
> distance style color #ff92e8
> distance style color #ff90e8
> distance style color #ff8fe8
> distance style color #ff8ee8
> distance style color #ff8de8
> distance style color #ff8ce8
> distance style color #ff8be8
> distance style color #ff8ae8
> distance style color #ff88e8
> distance style color #ff87e8
> distance style color #ff85e8
> distance style color #ff84e8
> select clear
> distance style symbol false
> distance style symbol true
> hide #12.1 models
> show #12.1 models
> hide #12.1 models
===== Log before crash end =====
Log:
> camera ortho
> cofr centerOfView
> mousemode rightMode zoom
> mousemode alt rightMode "contour level"
> mousemode alt leftMode "translate selected models"
> mousemode shift leftMode "rotate selected models"
> mousemode alt control leftMode "pick blobs"
> alias cofron cofr centerofview showpivot true
> alias cofroff cofr centerofview showpivot false
> alias cootmode set bgColor black; surface cap false; surface style solid;
> lighting flat; graphics silhouettes false; style stick; ~rib; color
> ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style
> solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70;
> cofr centerofview; clip near -10 far 10 position cofr; color ##~num_residues
> cornflower blue
> alias cootmode_mesh surface cap false; surface style mesh; lighting flat;
> graphics silhouettes false; style stick; ~rib; color ##num_residues gold;
> color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size
> ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far
> 10 position cofr; color ##~num_residues #3d60ffff; transparency 50
> alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1;
> disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp
> ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1
> alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp
> @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius
> 0.1
> alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000;
> marker #10000 position cofr; sel ~sel; surface zone ##~num_residues
> nearAtoms sel distance 15; close #10000
> alias map_unsphere surface unzone ##~num_residues
> alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5;
> lighting soft
> alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker
> #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel
> distance 0; close #10000
> alias showmaps surface unzone ##~num_residues
> alias caps_off surface cap false
> alias caps_on surface cap true
> alias selbetween ks ri
> alias helix setattr $1 res is_helix true
> alias strand setattr $1 res is_strand true
> alias coil setattr $1 res is_strand false; setattr $1 res is_helix false
> alias open_vseries "open browse vseries true"
> buttonpanel Shortcuts rows 3 columns 4
> buttonpanel Shortcuts add Vol_Viewer command "tool show 'Volume Viewer'"
> buttonpanel Shortcuts add Model_Panel command "tool show Models"
> buttonpanel Shortcuts add Log command "tool show Log"
> buttonpanel Shortcuts add default_disp command default_mol_display
> buttonpanel Shortcuts add map_sphere command map_sphere_15
> buttonpanel Shortcuts add map_unsphere command map_unsphere
> buttonpanel Shortcuts add cofron command cofron
> buttonpanel Shortcuts add cofroff command cofroff
> buttonpanel Shortcuts add cootmode command cootmode
> buttonpanel Shortcuts add mark_cofr command "marker #20000 position cofr"
> buttonpanel Shortcuts add hidemaps command hidemaps
> buttonpanel Shortcuts add showmaps command showmaps
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac
Model Identifier: Mac14,10
Model Number: Z1740017JLL/A
Chip: Unknown
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 32 GB
System Firmware Version: 10151.81.1
OS Loader Version: 10151.81.1
Software:
System Software Overview:
System Version: macOS 14.3.1 (23D60)
Kernel Version: Darwin 23.3.0
Time since boot: 6 days, 14 hours, 59 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 19
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 14 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 14 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Qt 6.6 bug. Crash in _NSViewHierarchyDidChangeBackingProperties.