![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Feb 9, 2024:
- 7:12 PM Ticket #14567 (Garbage collection crash, ChimeraX 1.3, Mac) closed by
- duplicate
- 7:11 PM Ticket #14567 (Garbage collection crash, ChimeraX 1.3, Mac) created by
- […]
- 7:05 PM Ticket #14566 (Garbage collection crash, Mac ChimeraX 1.4) closed by
- duplicate
- 7:03 PM Ticket #14566 (Garbage collection crash, Mac ChimeraX 1.4) created by
- […]
- 6:59 PM Ticket #14565 (Garbage collection crash, ChimeraX 1.5) closed by
- duplicate
- 6:55 PM Ticket #14565 (Garbage collection crash, ChimeraX 1.5) created by
- […]
- 6:54 PM Ticket #14564 (Crash in garbage collection) closed by
- duplicate
- 6:50 PM Ticket #14564 (Crash in garbage collection) created by
- […]
- 2:43 PM Ticket #14563 (Connection reset by peer contacting RBVI servers) created by
- […]
- 2:42 PM Ticket #14562 (Web services: Connection reset by peer) created by
- […]
- 1:53 PM Ticket #14561 (Windows: sys.executable: The system cannot find the file specified) created by
- […]
- 12:42 PM Ticket #14560 (Surface transparency not preserved when coloring) created by
- […]
- 9:59 AM Ticket #14559 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
Feb 8, 2024:
- 11:32 PM Ticket #14559 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:24 PM 2024-2-8 edited by
- (diff)
- 3:52 PM Ticket #14552 (ESMFold: name 'seg_uids' is not defined) closed by
- fixed: Fixed. The error is because Meta's ESMFold database SSL certificate …
- 2:40 PM Ticket #14551 ('Segmentation' object has no attribute 'map_path') closed by
- fixed: Fixed. Made segmentation reader handle missing map_path attribute.
- 12:51 PM Ticket #14558 (Crash handling mouse event) closed by
- can't reproduce
- 12:49 PM Ticket #14557 (Crash in garbage collection) closed by
- can't reproduce
- 12:37 PM 2024-2-8 edited by
- (diff)
- 12:33 PM DeveloperMeetings edited by
- (diff)
- 11:46 AM Ticket #14558 (Crash handling mouse event) created by
- […]
- 10:59 AM Ticket #14557 (Crash in garbage collection) created by
- […]
- 10:58 AM Ticket #14555 (SyntaxError in volume.py) closed by
- duplicate
- 10:46 AM Ticket #14553 (Logged 70K contacts) closed by
- not a bug: User showed the contacts, then ran the exact same command with "log true".
- 8:11 AM Ticket #14556 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by
- […]
- 8:09 AM Ticket #14555 (SyntaxError in volume.py) created by
- […]
- 3:35 AM Ticket #14554 (Small checkboxes on second monitor) created by
- […] chimera problem.png
- 2:37 AM Ticket #14553 (Logged 70K contacts) created by
- […]
Feb 7, 2024:
- 1:47 PM Ticket #14552 (ESMFold: name 'seg_uids' is not defined) created by
- […]
- 12:39 PM Training edited by
- (diff)
- 12:18 PM Ticket #14548 (Graphics glitches on external display) closed by
- nonchimerax: It seems like this has to be a problem with your graphics driver, …
- 11:46 AM Ticket #14551 ('Segmentation' object has no attribute 'map_path') created by
- […]
- 10:36 AM Ticket #14550 (Could not find atom for bond) created by
- […]
- 8:54 AM Ticket #14549 (Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce
- 8:09 AM Ticket #14549 (Failed to initialize graphics backend for OpenGL) created by
- […]
- 7:05 AM Ticket #14548 (Graphics glitches on external display) created by
- […] 2024-02-07 14-54-23.mkv
Feb 6, 2024:
- 2:33 PM Ticket #14544 (Various graphics errors) closed by
- can't reproduce: ChimeraX gave errors at startup and then appeared to not get a working …
- 2:20 PM Dev2024-2-12 created by
- 2:19 PM 2024-2-8 created by
- 2:09 PM 2024-2-1 edited by
- (diff)
- 2:04 PM DeveloperMeetings edited by
- (diff)
- 1:00 PM Ticket #14528 (Distance font size changes between coord sets) closed by
- fixed: Fix: …
- 9:26 AM Ticket #14546 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:25 AM Ticket #14545 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:21 AM Ticket #14543 (Crash in QMenu::mouseReleaseEvent() closed by
- can't reproduce: Hi Rosheny, Thanks for reporting this problem. The only thing I can …
- 7:02 AM Ticket #14547 (Plain sequence in structure associations) created by
- […]
- 4:51 AM Ticket #14546 (MemoryError opening mmCIF files) created by
- […]
- 2:21 AM Ticket #14545 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Feb 5, 2024:
- 9:41 PM Ticket #14544 (Various graphics errors) created by
- […]
- 9:38 PM Ticket #14543 (Crash in QMenu::mouseReleaseEvent() created by
- […]
- 6:24 PM Ticket #14542 (Log does not scroll to bottom after new command) created by
- […]
- 4:05 PM Dev2024-2-5 edited by
- (diff)
- 2:18 PM Ticket #10384 (vop unroll: cannot select an axis to squeeze out which has size not ...) closed by
- fixed: Fixed. This error is caused by using "volume unroll" on a volume …
- 2:15 PM Ticket #14540 (vop unroll error in orthoplanes) closed by
- fixed: Fixed. Simple case reproducing bug #10384 where orthoplanes center …
- 2:14 PM Ticket #14541 (volume orthoplanes: could not broadcast input array from shape (0,) ...) closed by
- fixed: Fixed. If orthoplanes center is outside region bound then show …
- 1:55 PM Ticket #14539 (Color map from segmentation: unsupported operand type(s) for *: ...) closed by
- fixed: Fixed. Attempting to color uncomputed volume surfaces now gives no …
- 12:53 PM Ticket #14541 (volume orthoplanes: could not broadcast input array from shape (0,) ...) created by
- […]
- 12:43 PM Ticket #14540 (vop unroll error in orthoplanes) created by
- […]
- 12:28 PM Ticket #14537 (cannot select an axis to squeeze out which has size not equal to one) closed by
- can't reproduce: Duplicate of #14536. As described in the previous ticket the problem …
- 12:15 PM Ticket #14536 (Graphics crashed) closed by
- can't reproduce: The error message indicates that there was a problem reading one of …
- 12:04 PM Ticket #14535 (Load marker set: no element found. Opening empty marker set .cmm file.) closed by
- nonchimerax: User appears to be opening an empty marker set .cmm (XML) file and the …
- 10:51 AM Ticket #14534 (Crash in garbage collection) closed by
- can't reproduce: Hi Melissa, Thanks for reporting this problem. It is typically …
- 10:47 AM Ticket #14533 (Crash in event loop at startup, M1 Mac running Intel ChimeraX) closed by
- can't reproduce
- 10:32 AM Ticket #14539 (Color map from segmentation: unsupported operand type(s) for *: ...) created by
- […] 3-seg_60c-HP.seg
- 7:18 AM Ticket #14538 (ISOLDE: ResidueStepper: self.positions is None) created by
- […]
Feb 4, 2024:
- 5:06 AM Ticket #14537 (cannot select an axis to squeeze out which has size not equal to one) created by
- […]
- 4:58 AM Ticket #14536 (Graphics crashed) created by
- […]
Feb 3, 2024:
- 11:29 PM Ticket #14535 (Load marker set: no element found. Opening empty marker set .cmm file.) created by
- […]
- 5:29 PM Ticket #14534 (Crash in garbage collection) created by
- […]
- 5:51 AM Ticket #14533 (Crash in event loop at startup, M1 Mac running Intel ChimeraX) created by
- […]
Feb 2, 2024:
- 5:08 PM Ticket #8616 (Multiple swapaa/na swaps) closed by
- fixed: Swapaa/na now accept a comma-separated list of residue types (or, as …
- 1:06 PM Ticket #14532 (Unable to download) created by
- […]
- 12:27 PM Ticket #14530 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:11 PM Ticket #14529 (Rotation dis-aligns models) closed by
- can't reproduce: You's have to give an exact example of all your steps, for example, do …
- 12:08 PM Ticket #14531 (Crash creating QWebEngineProfile) closed by
- can't reproduce: It is really perplexing how such a simple seeming constructor as …
- 11:57 AM Ticket #14531 (Crash creating QWebEngineProfile) created by
- […]
- 11:52 AM ChangeLog edited by
- (diff)
- 11:42 AM ChangeLog edited by
- (diff)
- 11:30 AM Ticket #14527 (Crash in garbage collection) closed by
- can't reproduce
- 11:27 AM Ticket #14526 (Crash in garbage collection) closed by
- can't reproduce: The log for this ticket is weird -- it seems to be missing the …
- 11:26 AM Ticket #14530 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) created by
- […]
- 11:06 AM Ticket #14529 (Rotation dis-aligns models) created by
- […]
- 10:58 AM Ticket #14524 (Crash in garbage collection) closed by
- can't reproduce
- 10:56 AM Ticket #14523 (Crash in garbage collection) closed by
- can't reproduce
- 10:52 AM Ticket #14521 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by
- limitation: User probably installed the tar ball version of ChimeraX and is …
- 9:41 AM Ticket #14522 (Crash in garbage collection) closed by
- can't reproduce: Hi Amit, Thanks for reporting this problem. It is typically difficult …
- 9:25 AM Ticket #14481 (SEQCROW: read_psi4_out: could not convert string to float) closed by
- fixed: Sorry it was such a hassle. Upgrading a bundle isn't usually this …
- 2:11 AM Ticket #14528 (Distance font size changes between coord sets) created by
- […]
Feb 1, 2024:
- 10:27 PM Ticket #14527 (Crash in garbage collection) created by
- […]
- 9:52 PM Ticket #14526 (Crash in garbage collection) created by
- […]
- 4:31 PM Ticket #14525 (expand_alias: cmd.word_info is None) created by
- […]
- 4:16 PM Ticket #14524 (Crash in garbage collection) created by
- […]
- 3:48 PM Ticket #14523 (Crash in garbage collection) created by
- […]
- 2:48 PM Ticket #14520 (sel down: array length mismatch) closed by
- duplicate: User tried to revert the selection with down arrow after expanding it …
- 1:45 PM Ticket #14522 (Crash in garbage collection) created by
- […]
- 1:43 PM NIAID2023 edited by
- (diff)
- 1:39 PM NIAID2023 edited by
- (diff)
- 11:49 AM Ticket #14521 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 10:56 AM Ticket #14514 (Crash showing volume dialog) closed by
- can't reproduce: Looks like a Qt bug. Crashed showing Volume Viewer panel. Crashed in …
- 10:45 AM Ticket #14519 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Hi Fernando, Thanks for reporting this problem. It looks like …
- 10:39 AM Ticket #14517 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:29 AM Ticket #14515 (Logged a lot of contacts) closed by
- not a bug: No actual error reported
- 7:52 AM Ticket #14520 (sel down: array length mismatch) created by
- […]
- 6:33 AM Ticket #14519 (Crash showing Rapid Access at startup) created by
- […]
- 5:59 AM Ticket #14518 (SEQCROW: normal modes: self.model_selector.currentData() is None) created by
- […]
- 3:13 AM Ticket #14517 (MemoryError opening mmCIF files) created by
- […]
- 2:04 AM Ticket #14516 (Marker "notes") created by
- […]
Jan 31, 2024:
- 9:57 PM Ticket #14515 (Logged a lot of contacts) created by
- […]
- 4:56 PM Ticket #14451 (Select→Contacts not selecting in both chains) closed by
- fixed
- 4:38 PM Ticket #14514 (Crash showing volume dialog) created by
- […]
- 4:27 PM Ticket #14413 (Region not in regions list) closed by
- can't reproduce: Hi Jihun, Thanks for reporting this problem. I tried a few things …
- 12:21 PM Ticket #14511 (Re: [chimerax-users] transparency around the model only) closed by
- can't reproduce: I tried the steps you did to make this session and the session …
- 11:25 AM Ticket #14513 (Illegal PDB file) closed by
- nonchimerax: Hi Francisco, As per the PDB standard, chain IDs have to be …
- 11:03 AM Ticket #14513 (Illegal PDB file) created by
- […] superposition.pdb
- 11:00 AM Ticket #14512 (Crash in garbage collection) closed by
- can't reproduce: Doesn't have the Python stack or the crash log
- 10:43 AM Ticket #14509 (Crash in garbage collection) closed by
- can't reproduce: Hi Tiffany, Thanks for reporting this problem. It is typically …
- 9:50 AM Ticket #14506 (Crash in garbage collection) closed by
- can't reproduce: Hi Mark, Thanks for reporting this problem. It is typically difficult …
- 9:41 AM Ticket #14512 (Crash in garbage collection) created by
- […]
- 9:08 AM Ticket #14511 (Re: [chimerax-users] transparency around the model only) created by
- […] tzone.cxs […] [[Image(Screen Shot …
- 6:27 AM Ticket #14510 (KeyError restoring tasks) created by
- […]
- 3:10 AM Ticket #14509 (Crash in garbage collection) created by
- […]
Jan 30, 2024:
- 3:37 PM Ticket #14508 (Allow 3d labels on models for tiling) closed by
- fixed: Done. The 3d label command now can label models, for example …
- 3:23 PM Ticket #14508 (Allow 3d labels on models for tiling) created by
- Currently 3d labels can only be placed on atoms, bonds, pseudobonds …
- 3:04 PM Ticket #14507 (Graphics crash labeling models) closed by
- fixed: Fixed. Crash happened because label drawing vertices was set to an …
- 2:46 PM Ticket #14507 (Graphics crash labeling models) created by
- […]
- 2:22 PM Ticket #14506 (Crash in garbage collection) created by
- […]
- 11:10 AM Ticket #14505 (Crash in event loop) closed by
- can't reproduce
- 11:08 AM Ticket #14504 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:42 AM Ticket #14503 (Crash in garbage collection) closed by
- can't reproduce
- 10:41 AM Ticket #14502 (Crash in garbage collection) closed by
- can't reproduce
- 10:24 AM Dev2024-2-5 created by
- 10:23 AM 2024-2-1 created by
- 10:22 AM DeveloperMeetings edited by
- (diff)
- 7:04 AM Ticket #14505 (Crash in event loop) created by
- […]
- 2:25 AM Ticket #14504 (MemoryError opening mmCIF files) created by
- […]
Jan 29, 2024:
- 11:54 PM Ticket #14503 (Crash in garbage collection) created by
- […]
- 7:46 PM Ticket #14502 (Crash in garbage collection) created by
- […]
- 6:41 PM Ticket #14501 (self.vertex_colors is empty) closed by
- fixed: Fixed. An empty molecular surface was created (using the obscure …
- 6:06 PM Ticket #14501 (self.vertex_colors is empty) created by
- […]
- 6:05 PM Ticket #14500 (MemoryError opening mmCIF files) closed by
- duplicate
- 6:04 PM Ticket #14500 (MemoryError opening mmCIF files) created by
- […]
- 6:03 PM Ticket #14499 (Crash opening PDB file) closed by
- can't reproduce
- 6:03 PM Ticket #14496 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- limitation: We don't support running ChimeraX remotely. You should copy your data …
- 6:00 PM Ticket #14499 (Crash opening PDB file) created by
- […]
- 5:58 PM Ticket #14498 (ISOLDE: possible error in MD template) created by
- […]
- 5:57 PM Ticket #14497 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 5:55 PM Ticket #14497 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:55 PM Ticket #14493 (ffmpeg: Symbol not found) closed by
- limitation: You are running macOS 11.6. And in the error log, it says: …
- 5:52 PM Ticket #14496 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:51 PM Ticket #14495 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 5:50 PM Ticket #14495 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 5:46 PM Ticket #14494 (Crash in garbage collection) closed by
- can't reproduce
- 5:45 PM Ticket #14494 (Crash in garbage collection) created by
- […]
- 5:41 PM Ticket #14493 (ffmpeg: Symbol not found) created by
- […]
- 5:40 PM Ticket #14490 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 5:19 PM Dev2024-1-29 edited by
- (diff)
- 3:55 PM Ticket #14492 (support binary mmCIF files) created by
- The PDB appear to have committed to supporting BinaryCIF, …
- 3:18 PM Ticket #14491 (Make tile command set trackpad to independent rotation mode) closed by
- fixed: Done. Now the tile command sets the trackpad two-finger drag to do …
- 2:43 PM Ticket #14491 (Make tile command set trackpad to independent rotation mode) created by
- […]
- 2:15 PM Ticket #14490 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 1:41 PM Ticket #14489 (MatchMaker: IndexError: vector) closed by
- can't reproduce
- 1:37 PM Ticket #14489 (MatchMaker: IndexError: vector) created by
- […]
- 1:36 PM Ticket #14488 (Crash while asking to register) closed by
- can't reproduce: Strong chance this is actually the wake-from-sleep-with-dual-displays crash
- 12:09 PM Ticket #14488 (Crash while asking to register) created by
- […]
- 12:08 PM Dev2024-1-29 edited by
- (diff)
- 11:41 AM Dev2024-1-29 edited by
- (diff)
- 11:41 AM Dev2024-1-29 edited by
- (diff)
- 11:25 AM Dev2024-1-29 edited by
- (diff)
Jan 26, 2024:
- 7:08 PM Ticket #14472 (UCSF Wynton alphafold prediction run_alphafold232.py should handle ...) closed by
- fixed: Done. If the fasta path is absolute or the output directory path is …
- 5:19 PM ChangeLog edited by
- (diff)
- 4:53 PM Ticket #14483 (Problem opening mmCIF file) closed by
- limitation: The problem is shown in the ChimeraX log: Skipping atom_site …
- 4:02 PM Ticket #7608 (Option to 'combine' to retain chain IDs) closed by
- fixed: In the next daily build there will be a 'retainIds' option to …
- 1:34 PM Ticket #14487 (dies at startup) created by
- Hi, I've installed Chimerax 1.7.1 using the .deb. When launching the …
- 12:23 PM Ticket #14486 (Add lastOpened selector) closed by
- fixed: Done. The lastOpened selector refers to the last top level model …
- 12:20 PM Ticket #14486 (Add lastOpened selector) created by
- […]
- 11:04 AM Ticket #14485 (QQuickWidget: Failed to make context current) closed by
- can't reproduce: Remote/secondary display
- 11:02 AM Ticket #14484 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:55 AM Ticket #14482 (Crash in event loop) closed by
- can't reproduce
- 8:56 AM Ticket #14485 (QQuickWidget: Failed to make context current) created by
- […]
- 7:08 AM Ticket #14484 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:50 AM Ticket #14483 (Problem opening mmCIF file) created by
- […] protein.cif
- 6:02 AM Ticket #14482 (Crash in event loop) created by
- […]
Jan 25, 2024:
- 4:21 PM Ticket #14473 (distance text color) closed by
- fixed: Both fixed: …
- 2:40 PM Ticket #14480 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce
- 2:39 PM Ticket #14479 (MemoryError opening mmCIF files) closed by
- duplicate
- 2:39 PM Ticket #14478 (Can't download ChimeraX) closed by
- fixed: Hi Johan, Thanks for reporting this problem. There was an error in …
- 2:37 PM Ticket #14477 (Crash in garbage collection) closed by
- can't reproduce
- 2:31 PM 2024-1-25 edited by
- (diff)
- 2:28 PM Ticket #14476 (Spurious TER cards) closed by
- fixed: Hi Claudia, Thanks for reporting this problem. The TER cards that …
- 2:17 PM NIAID2023 edited by
- (diff)
- 2:16 PM NIAID2023 edited by
- (diff)
- 2:03 PM NIAID2023 edited by
- (diff)
- 2:02 PM NIAID2023 edited by
- (diff)
- 1:53 PM NIAID2023 edited by
- (diff)
- 12:55 PM Ticket #14475 (Internal server error) closed by
- fixed: Hi Esha, Thanks for reporting this problem. There was an error in …
- 12:00 PM Ticket #14481 (SEQCROW: read_psi4_out: could not convert string to float) created by
- […] benzene_tcne_r2scan3c.out
- 11:00 AM Ticket #14474 (glGetFramebufferAttachmentParameteriv: invalid enumeration) closed by
- can't reproduce: 1.2.5
- 10:12 AM Ticket #14480 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:36 AM Ticket #14479 (MemoryError opening mmCIF files) created by
- […]
- 8:27 AM Ticket #14478 (Can't download ChimeraX) created by
- […]
- 7:22 AM Ticket #14477 (Crash in garbage collection) created by
- […]
- 7:16 AM Ticket #14476 (Spurious TER cards) created by
- […]
- 6:55 AM Ticket #14475 (Internal server error) created by
- […] 20240125_094403.jpg
- 5:42 AM Ticket #14474 (glGetFramebufferAttachmentParameteriv: invalid enumeration) created by
- […]
- 3:35 AM Ticket #14473 (distance text color) created by
- […]
- 2:44 AM Ticket #14402 (Clipper: open MTZ file: HKLs must be an nx3 Numpy array!) closed by
- fixed: Found the problem - was arising when trying to load an MTZ file …
- 1:34 AM Ticket #14462 (Clipper: HKLs must be an nx3 Numpy array) closed by
- fixed: Never mind. As luck would have it, I just received a MTZ file …
Jan 24, 2024:
- 5:58 PM Ticket #14471 (Alphafold error prediction GUI does not guess PAE file name) closed by
- fixed: Fixed. There were three different problems. One is that the suffxes …
- 4:49 PM Ticket #14472 (UCSF Wynton alphafold prediction run_alphafold232.py should handle ...) created by
- My Python script for running AlphaFold predictions on the UCSF Wynton …
- 4:41 PM Ticket #14471 (Alphafold error prediction GUI does not guess PAE file name) created by
- […]
- 11:11 AM Ticket #14460 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Error resetting to draw back buffer on to render to main window after …
- 11:07 AM Ticket #14453 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- limitation: Just want to say that using ChimeraX remotely does work sometimes. …
- 11:06 AM Ticket #14463 (Graphics crash, macOS 12.5.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:03 AM Ticket #14468 (Volume onesmask cannot be Guassian filtered with SD > 0.8) closed by
- not a bug: As you can see in the ChimeraX Log panel your ones mask has values …
- 10:48 AM Ticket #14466 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Don't know ChimeraX could fail to startup and have a log. Perhaps …
- 10:10 AM Ticket #14464 (Problems with level 2 flipped map) closed by
- duplicate: I fixed this yesterday. Get current daily build. The caching of the …
- 10:10 AM Ticket #14470 (Model Panel Feature missing) closed by
- not a bug: Hi Matt, Once we start making release candidate builds, in the …
- 9:49 AM Ticket #14465 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Remote or secondary display
- 9:40 AM Ticket #14461 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Remote or secondary display
- 8:41 AM Ticket #14470 (Model Panel Feature missing) created by
- […] [[Image(...)]] [[Image(...)]] …
- 8:00 AM Ticket #14469 (ArtiaX: argument of type 'int' is not iterable) created by
- […]
- 7:18 AM Ticket #14468 (Volume onesmask cannot be Guassian filtered with SD > 0.8) created by
- […]
- 6:46 AM Ticket #14467 (Residue NAG is linked to a glycan, but no parameters are available for ...) created by
- […]
- 6:25 AM Ticket #14466 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:13 AM Ticket #14465 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:05 AM Ticket #14464 (Problems with level 2 flipped map) created by
- […]
- 2:47 AM Ticket #14463 (Graphics crash, macOS 12.5.1, Intel UHD Graphics 617) created by
- […]
- 2:31 AM Ticket #14462 (Clipper: HKLs must be an nx3 Numpy array) created by
- […]
- 2:18 AM Ticket #14461 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 12:47 AM Ticket #14460 (glDrawBuffer: invalid operation) created by
- […]
Jan 23, 2024:
- 5:15 PM Ticket #14398 (Save mmCIF: 'Residue' object has no attribute 'display') closed by
- fixed: Fixed in daily build. Consider a residue displayed if it's ribbon …
- 12:04 PM Ticket #14458 (Framebuffer incomplete) closed by
- can't reproduce: The traceback said "out of memory" trying to create an OpenGL frame …
- 11:24 AM Dev2024-1-29 created by
- 11:24 AM 2024-1-18 edited by
- (diff)
- 11:23 AM 2024-1-25 created by
- 11:23 AM DeveloperMeetings edited by
- (diff)
- 11:07 AM Ticket #14459 (QQuickWidget: Failed to make context current) closed by
- can't reproduce
- 10:49 AM Ticket #14459 (QQuickWidget: Failed to make context current) created by
- […]
- 10:43 AM Ticket #14458 (Framebuffer incomplete) created by
- […]
- 10:42 AM Ticket #14457 (Crash in event loop) created by
- […]
- 9:41 AM Ticket #14456 (Crash in garbage collection) closed by
- can't reproduce: Hi Haaris, Thanks for reporting this problem. It is typically …
- 9:34 AM Ticket #14452 (Crash in event loop) closed by
- can't reproduce: Remote/secondary display
- 9:30 AM Ticket #14450 (Crash in garbage collection) closed by
- can't reproduce
- 5:48 AM Ticket #14456 (Crash in garbage collection) created by
- […]
- 5:20 AM Ticket #14455 (Crash in event loop) created by
- […]
- 2:52 AM Ticket #14454 (Clipper not found) created by
- […]
- 12:48 AM Ticket #14453 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Jan 22, 2024:
- 7:24 PM Ticket #14452 (Crash in event loop) created by
- […]
- 6:45 PM Ticket #14392 (Cannot change level of flipped map) closed by
- fixed: Fixed. This was convoluted error where the flipped volume did not …
- 5:12 PM Ticket #14451 (Select→Contacts not selecting in both chains) created by
- […]
- 4:56 PM Ticket #14450 (Crash in garbage collection) created by
- […]
- 3:46 PM Milestone 1.7 completed
- Branch and release candidates: Discuss October 24, 2023. = Completed …
- 3:43 PM Ticket #14449 (Crash in garbage collection) created by
- […]
- 2:56 PM Ticket #14440 (Tried to add model but parent does not exist) closed by
- limitation: The user saved a session with a volume where a blob outline box had …
- 2:42 PM Dev2024-1-22 edited by
- (diff)
- 1:51 PM Ticket #14448 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate: Oli only needs to toggle "Typed Commands Only" to trigger the crash.
- 1:49 PM Ticket #14447 (Crash in garbage collection) closed by
- can't reproduce: Hi Herve, Thanks for reporting this problem. It is typically …
- 12:27 PM Ticket #14448 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 12:11 PM Ticket #14445 (Qt fatal error: Failed to initialize graphics backend for OpenG) closed by
- duplicate: Duplicate of #14444
- 12:10 PM Ticket #14444 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Oddly they are running the Intel ChimeraX 1.7 on this M2 Mac. Also …
- 12:10 PM Ticket #14447 (Crash in garbage collection) created by
- […]
- 11:56 AM Ticket #14438 (composeAndFlush: makeCurrent() failed) closed by
- limitation: It's interesting that WAYLAND_DISPLAY=wayland-0 and DISPLAY=:1. Not …
- 11:43 AM Ticket #14435 (Charge failure) closed by
- not a bug: Hi Oliver, It looks like your NTG.mol2 file is a two-dimensional …
- 11:19 AM Ticket #14443 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:17 AM Ticket #14442 (Crash in garbage collection) closed by
- can't reproduce
- 11:12 AM Ticket #14437 (Single-quoting not working) closed by
- fixed: Fixed.
- 11:11 AM Ticket #14439 (Opening AlphaFold JSON as MOLE) closed by
- duplicate
- 11:04 AM Ticket #14436 (Unknown MD coordinate format: psf) closed by
- not a bug
- 11:01 AM Ticket #14434 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:59 AM Ticket #14433 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:58 AM Ticket #14432 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:56 AM Ticket #14431 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:55 AM Ticket #14430 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate: This report is mildly different from the others, but the crash is …
- 10:51 AM Ticket #14429 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:50 AM Ticket #14428 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:49 AM Ticket #14427 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:47 AM Ticket #14426 (Qt 6.6.1 crash in QComboBox.addItems()) closed by
- duplicate
- 10:45 AM Ticket #14425 (Crash in garbage collection) closed by
- can't reproduce
- 10:43 AM Ticket #14424 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Kui, Thanks for reporting this problem. This is a bug in the Qt …
- 10:41 AM Ticket #14392 (Cannot change level of flipped map) reopened by
- Thanks for the tip about the step 2 being important. I tried with …
- 10:30 AM Ticket #14446 (Error opening file with single quotes) closed by
- duplicate
- 10:23 AM Ticket #14446 (Error opening file with single quotes) created by
- […]
- 10:17 AM Ticket #14421 (trying to start unknown tool: wiggle) closed by
- nonchimerax: Seems like a coding error in the bundle
- 10:10 AM Ticket #14420 (AddH: hydrogens bonded to each other) closed by
- not a bug
- 10:04 AM Ticket #14419 (Crash in garbage collection) closed by
- can't reproduce
- 9:14 AM Ticket #14445 (Qt fatal error: Failed to initialize graphics backend for OpenG) created by
- […]
- 8:59 AM Ticket #14444 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:37 AM Ticket #14443 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 8:14 AM Ticket #14442 (Crash in garbage collection) created by
- […]
- 6:26 AM Ticket #14441 (Crash in garbage collection) created by
- […]
- 5:54 AM Ticket #14440 (Tried to add model but parent does not exist) created by
- […]
- 4:07 AM Ticket #14439 (Opening AlphaFold JSON as MOLE) created by
- […]
- 4:06 AM Ticket #14438 (composeAndFlush: makeCurrent() failed) created by
- […]
- 3:41 AM Ticket #14437 (Single-quoting not working) created by
- […]
- 2:04 AM Ticket #14436 (Unknown MD coordinate format: psf) created by
- […]
Jan 21, 2024:
- 2:54 PM Ticket #14435 (Charge failure) created by
- […] NTG.mol2
- 10:01 AM Ticket #14434 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:59 AM Ticket #14433 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:55 AM Ticket #14432 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:52 AM Ticket #14431 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:51 AM Ticket #14430 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:43 AM Ticket #14429 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:41 AM Ticket #14428 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:41 AM Ticket #14427 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 9:37 AM Ticket #14426 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 6:46 AM Ticket #14425 (Crash in garbage collection) created by
- […]
Jan 20, 2024:
- 6:44 PM Ticket #14424 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:00 PM Ticket #14423 (read_xtc failure; return code 7) created by
- […] 1hvn.xtc
- 4:21 PM Ticket #14422 (Qt 6.6.1 crash in QComboBox.addItems()) created by
- […]
- 1:11 PM Ticket #14421 (trying to start unknown tool: wiggle) created by
- […]
- 7:38 AM Ticket #14420 (AddH: hydrogens bonded to each other) created by
- […]
Jan 19, 2024:
- 11:03 PM Ticket #14419 (Crash in garbage collection) created by
- […]
- 5:53 PM Ticket #14403 (XTC/TRR readers don't close file) closed by
- fixed: Thanks for finding this Tony. Fixed in tomorrow's 1.8 daily build. --Eric
- 1:29 PM Ticket #14416 (Session restore: No module named 'lz4._version') closed by
- duplicate: Duplicate of #10408
- 1:26 PM Ticket #14415 (Crash using menus) closed by
- can't reproduce
- 1:24 PM Ticket #14414 (Crash in garbage collection while rotating models) closed by
- can't reproduce: Hi Bruno, Thanks for reporting this problem. It is typically …
- 1:14 PM Ticket #14408 (Add command to move models to center of rotation) closed by
- fixed: Done. I added a "move cofr <models-spec>" command, for example, …
- 1:06 PM Ticket #14418 (Mac-SEQCROW bug?) created by
- […]
- 12:35 PM Ticket #14412 (Label not wide enough) closed by
- fixed
- 11:31 AM Ticket #14417 (Delete old coordinate slider when new one is created) closed by
- fixed: Fixed. I made the coordset slider command always remove existing …
- 11:27 AM Ticket #14417 (Delete old coordinate slider when new one is created) created by
- From: Albert Smith-Penzel Subject: coordset slider Date: January 19, …
- 10:55 AM Training edited by
- (diff)
- 3:37 AM Ticket #14416 (Session restore: No module named 'lz4._version') created by
- […]
- 3:12 AM Ticket #14415 (Crash using menus) created by
- […]
- 3:11 AM Ticket #14414 (Crash in garbage collection while rotating models) created by
- […]
- 1:51 AM Ticket #14413 (Region not in regions list) created by
- […]
Jan 18, 2024:
- 5:31 PM Ticket #14405 (Quotes vs. semicolons) closed by
- fixed: Fixed in tomorrow's daily build.
- 5:16 PM Ticket #14412 (Label not wide enough) created by
- […]
- 5:04 PM Ticket #14411 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 5:02 PM Ticket #14409 (Crash in garbage collection while showing alignment) closed by
- can't reproduce
- 4:54 PM Ticket #10352 (openvr.error_code.CompositorError_TextureUsesUnsupportedFormat) closed by
- can't reproduce: No response from reporter.
- 4:53 PM Ticket #10419 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Current ChimeraX daily build is now using Qt 6.6 which may resolve the …
- 4:51 PM Ticket #14387 (Startup message: doh set to "" -- SystemOnly) closed by
- fixed: Suppressed this spurious Qt message.
- 4:50 PM Ticket #14410 (OpenXR: TypeError: unsupported operand type(s) for >>: 'Version' and 'int') closed by
- fixed: Fixed. PyOpenXR now returns the version as a Version instance instead …
- 4:43 PM Ticket #14411 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:41 PM Ticket #14410 (OpenXR: TypeError: unsupported operand type(s) for >>: 'Version' and 'int') created by
- […]
- 4:34 PM Ticket #14409 (Crash in garbage collection while showing alignment) created by
- […]
- 4:33 PM Ticket #14401 (Invalid wheel filename: 'Isolde.whl') closed by
- not a bug: Wheel names must follow PEP 427 so the platform and abi tags are present.
- 4:20 PM Ticket #14407 (Crash in garbage collection while parsing atom spec) closed by
- can't reproduce: It looks like at some point we are going to have to buckle down and …
- 4:08 PM Ticket #14408 (Add command to move models to center of rotation) created by
- From: Oliver Clarke via ChimeraX-users <chimerax-users@…> …
- 4:05 PM Ticket #14396 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 3:52 PM Ticket #14406 (Crash in garbage collection during check_for_changes) closed by
- can't reproduce
- 3:49 PM Ticket #14407 (Crash in garbage collection while parsing atom spec) created by
- […]
- 3:10 PM Ticket #14406 (Crash in garbage collection during check_for_changes) created by
- […]
- 3:04 PM Ticket #14405 (Quotes vs. semicolons) created by
- […]
- 2:53 PM Ticket #14400 (Color zone segmentation issue) closed by
- not a bug: The segmentation worked fine, the region outside your virus is set to …
- 2:28 PM 2024-1-18 edited by
- (diff)
- 2:15 PM NIAID2023 edited by
- (diff)
- 2:04 PM NIAID2023 edited by
- (diff)
- 1:40 PM NIAID2023 edited by
- (diff)
- 12:09 PM Ticket #14404 (Session restore, tasks: KeyError) created by
- […]
- 11:37 AM Ticket #14403 (XTC/TRR readers don't close file) created by
- […]
- 10:59 AM Ticket #14397 (Crash in garbage collection) closed by
- can't reproduce
- 7:35 AM Ticket #14402 (Clipper: open MTZ file: HKLs must be an nx3 Numpy array!) created by
- […]
- 7:19 AM Ticket #14401 (Invalid wheel filename: 'Isolde.whl') created by
- […]
Jan 17, 2024:
- 10:40 PM 2024-1-18 edited by
- (diff)
- 5:24 PM Ticket #14400 (Color zone segmentation issue) created by
- […] [[Image(...)]]
- 4:54 PM Ticket #14399 (Creating Mac universal build dmg fails "no space left on device") closed by
- fixed: Fixed. Not pretty, but I just hard-coded the dmg size as 4 Gbytes in …
- 4:44 PM Ticket #14399 (Creating Mac universal build dmg fails "no space left on device") created by
- After updating Qt from 6.3 to 6.6 in the daily build creating the dmg …
- 2:59 PM Ticket #14398 (Save mmCIF: 'Residue' object has no attribute 'display') created by
- […]
- 12:55 PM Ticket #14397 (Crash in garbage collection) created by
- […]
- 12:19 PM Ticket #14392 (Cannot change level of flipped map) closed by
- worksforme: It is working fine for me in ChimeraX 1.7 on Mac ARM. Maybe you had …
- 12:14 PM Ticket #14395 (Build fails due to "pip check" and pyopenxr / pyopengl inconsistency) closed by
- fixed: Fixed. The real cause of this problem was our pyopenxr patch which …
- 11:40 AM Ticket #14396 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 645) created by
- […]
- 11:17 AM Ticket #14395 (Build fails due to "pip check" and pyopenxr / pyopengl inconsistency) created by
- After updating pyopenxr to version 1.0.3301 the ChimeraX build fails …
- 10:54 AM Ticket #14394 (Crash handling text input) closed by
- can't reproduce
- 10:51 AM Ticket #14393 (Crash in menu/menubar code) closed by
- can't reproduce
- 10:48 AM Ticket #14391 (swapaa: DunbrackRotamerLibrary' object has no attribute 'display_name') closed by
- duplicate
- 10:43 AM Ticket #14386 (Intel ffmpeg on ARM) closed by
- duplicate: This was fixed in ChimeraX 1.7 which includes Mac ARM ffmpeg.
- 10:43 AM Ticket #14389 (Crash going to full screen) closed by
- can't reproduce: Some screen position Y coordinate was NaN
- 10:31 AM Ticket #14394 (Crash handling text input) created by
- […]
- 5:14 AM Ticket #14393 (Crash in menu/menubar code) created by
- […]
- 2:43 AM Ticket #14392 (Cannot change level of flipped map) created by
- […]
Jan 16, 2024:
- 11:44 PM Ticket #14391 (swapaa: DunbrackRotamerLibrary' object has no attribute 'display_name') created by
- […]
- 6:15 PM Ticket #14390 (Update to Qt 6.6, requires macOS 11 minimum) created by
- Update ChimeraX 1.8 daily build to Qt 6.6 which requires macOS 11 or …
- 4:59 PM Training edited by
- (diff)
- 4:26 PM Ticket #14389 (Crash going to full screen) created by
- […]
- 4:21 PM Ticket #14388 (Testing bug reporting with updated prereqs) closed by
- worksforme: All working.
- 4:18 PM Ticket #14388 (Testing bug reporting with updated prereqs) created by
- […]
- 3:41 PM Ticket #14387 (Startup message: doh set to "" -- SystemOnly) created by
- […]
- 3:16 PM Ticket #14386 (Intel ffmpeg on ARM) created by
- […] thresholding_movie.py
- 2:46 PM Ticket #14385 (read_full_array: Permission denied) closed by
- nonchimerax: The error message is because your session is trying to open a map file …
- 2:39 PM Ticket #14384 (Segger: 'NoneType' object has no attribute 'matrix') closed by
- duplicate: Fixed in ChimeraX 1.7.
- 2:29 PM Ticket #14385 (read_full_array: Permission denied) created by
- […]
- 2:26 PM Ticket #14383 (Crash in garbage collection while restoring session) closed by
- can't reproduce
- 2:22 PM Ticket #14382 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Songzhe, You've reported this exact same bug three other times, …
- 2:13 PM 2024-1-11 edited by
- (diff)
- 2:13 PM DeveloperMeetings edited by
- (diff)
- 2:12 PM Dev2024-1-22 created by
- 2:11 PM 2024-1-18 created by
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 2:03 PM Ticket #14378 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:01 PM Ticket #14379 (Graphics crash, macOS 13.4, AMD Radeon Pro 5500 XT) closed by
- nonchimerax: Apple AMD graphics driver crash.
- 1:59 PM Ticket #14381 (MD Viewer: blank coordinate fields) closed by
- not a bug: Bad PDB file
- 1:50 PM Ticket #14380 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 1:20 PM Ticket #14377 (Help in Extracting pLDDT confidence Scores in CSV Format from ChimeraX ...) closed by
- not a bug: Redirected to, and answered on, chimeras-users mailing list.
Jan 15, 2024:
- 10:26 PM Ticket #14384 (Segger: 'NoneType' object has no attribute 'matrix') created by
- […]
- 2:11 PM Ticket #14383 (Crash in garbage collection while restoring session) created by
- […]
- 11:48 AM Ticket #14382 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 8:07 AM Ticket #14381 (MD Viewer: blank coordinate fields) created by
- […]
- 7:52 AM Ticket #14380 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:18 AM Ticket #14379 (Graphics crash, macOS 13.4, AMD Radeon Pro 5500 XT) created by
- […]
Jan 14, 2024:
- 12:56 PM Ticket #14378 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 655) created by
- […]
- 12:00 PM Ticket #14377 (Help in Extracting pLDDT confidence Scores in CSV Format from ChimeraX ...) created by
- […]
Jan 12, 2024:
- 4:08 PM Ticket #10458 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Thanks for the report. The ChimeraX log says it failed to initialize …
- 4:03 PM Ticket #14374 (Crash creating QWebEngineProfile) closed by
- can't reproduce: We've seen this QWebEngineProfile(parent) crash many times. Seems like …
- 9:45 AM Ticket #14376 (Test) closed by
- not a bug
- 9:41 AM Ticket #14376 (Test) created by
- […]
Jan 11, 2024:
- 3:15 PM ChangeLog edited by
- (diff)
- 1:56 PM NIAID2023 edited by
- (diff)
- 1:45 PM NIAID2023 edited by
- (diff)
- 1:34 PM NIAID2023 edited by
- (diff)
- 11:43 AM Ticket #14375 (Crash in event loop) closed by
- can't reproduce
- 11:30 AM Ticket #14373 (Crash making OpenGL context current while creating main menus) closed by
- can't reproduce
- 11:10 AM Ticket #14375 (Crash in event loop) created by
- […]
- 10:48 AM Ticket #14374 (Crash creating QWebEngineProfile) created by
- […]
- 7:34 AM Ticket #14373 (Crash making OpenGL context current while creating main menus) created by
- […]
- 2:58 AM Ticket #10458 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
