Opened 22 months ago

Closed 22 months ago

#14377 closed defect (not a bug)

Help in Extracting pLDDT confidence Scores in CSV Format from ChimeraX AlphaFold

Reported by: amityankees@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Structure Prediction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

Dear ChimeraX Developer,

I hope this message finds you well. I am reaching out as a newcomer to
ChimeraX and Alphafold, seeking guidance on extracting the pLDDT score in
CSV format from the best model obtained through ChimeraX AlphaFold.

Specifically, I am interested in obtaining information such as Binding
Protein, Bond Type, Protein Residue, Peptide Residue, Distance (Å), and the
"pLDDT Range Score." Despite my attempts with the B-factor, I have
encountered challenges in extracting the pLDDT range confidence score.

I would greatly appreciate any assistance or guidance you can provide on
this matter.

Thank you for your time and consideration.

Kind regards,

Amit

Change History (2)

comment:1 by Eric Pettersen, 22 months ago

Component: Unassigned → Structure Prediction
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned

comment:2 by Eric Pettersen, 22 months ago

Resolution: → not a bug
Status: assigned → closed

Redirected to, and answered on, chimeras-users mailing list.

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