![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 21 months ago
Closed 21 months ago
#14534 closed defect (can't reproduce)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000070000dd51000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00007000218b1000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001f8a8000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001e8a5000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001d8a2000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001c89f000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001b89c000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001a899000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000700019896000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000700018893000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000700017890000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001688d000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000070001588a000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x000000010ff1cdc0 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 97 in _atoms_pair
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py", line 209 in get_prop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 2222 in _bond_intercept
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 1188 in first_intercept
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 736 in _position_intercepts
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 703 in first_intercept
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1086 in first_intercept_children
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1069 in first_intercept
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/models.py", line 143 in first_intercept
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 863 in picked_object_on_segment
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 831 in picked_object
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mouse_modes/std_modes.py", line 803 in pause
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mouse_modes/mousemodes.py", line 641 in _mouse_pause
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mouse_modes/mousemodes.py", line 504 in mouse_pause_tracking
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 151 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, numpy.linalg.lapack_lite (total: 61)
Process: ChimeraX [9780]
Path: /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [9780]
User ID: 501
Date/Time: 2024-02-03 17:27:25.752 -0800
OS Version: Mac OS X 10.15.7 (19H2)
Report Version: 12
Bridge OS Version: 6.6 (19P6064)
Anonymous UUID: F61A1488-55A7-1405-FC7D-17856118640C
Sleep/Wake UUID: B11B95C9-C93C-4812-80A6-78A87067D8BD
Time Awake Since Boot: 56000 seconds
Time Since Wake: 870 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 000000010b093000-000000010b097000 [ 16K] r-x/r-x SM=COW /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6be8533a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6bf41e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6bd9c93e raise + 26
3 org.python.python 0x000000010b3205d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff6bf365fd _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 org.python.python 0x000000010b1cf8f4 tupletraverse + 52
7 org.python.python 0x000000010b31c888 gc_collect_main + 2568
8 org.python.python 0x000000010b31e102 _PyObject_GC_Link + 306
9 org.python.python 0x000000010b1e2bfd _PyType_AllocNoTrack + 125
10 org.python.python 0x000000010b1d627e PyType_GenericAlloc + 14
11 org.python.python 0x000000010b1e3264 object_new + 100
12 org.python.python 0x000000010b1d2b15 type_call + 69
13 org.python.python 0x000000010b14e3b1 _PyObject_MakeTpCall + 129
14 org.python.python 0x000000010b27c3e7 _PyEval_EvalFrameDefault + 60455
15 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
16 org.python.python 0x000000010b15eeb1 property_descr_get + 129
17 org.python.python 0x000000010b1b9f44 _PyObject_GenericGetAttrWithDict + 420
18 org.python.python 0x000000010b275222 _PyEval_EvalFrameDefault + 31330
19 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
20 org.python.python 0x000000010b152816 method_vectorcall + 454
21 QtCore.abi3.so 0x000000011a5a5f98 PyQtSlot::call(_object*, _object*) const + 40
22 QtCore.abi3.so 0x000000011a5a5e9a PyQtSlot::invoke(void**, _object*, void*, bool) const + 362
23 QtCore.abi3.so 0x000000011a5a6de5 PyQtSlotProxy::unislot(void**) + 85
24 QtCore.abi3.so 0x000000011a5a6d5a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
25 QtCore 0x000000011a8bcd67 0x11a7ff000 + 777575
26 QtCore 0x000000011a8d1b57 QTimer::timerEvent(QTimerEvent*) + 199
27 QtCore.abi3.so 0x000000011a496b69 sipQTimer::timerEvent(QTimerEvent*) + 121
28 QtCore 0x000000011a8b54cd QObject::event(QEvent*) + 109
29 QtCore.abi3.so 0x000000011a4969ea sipQTimer::event(QEvent*) + 186
30 QtWidgets 0x000000011cf9ba87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
31 QtWidgets 0x000000011cf9ca43 QApplication::notify(QObject*, QEvent*) + 499
32 QtWidgets.abi3.so 0x000000011cab81e6 sipQApplication::notify(QObject*, QEvent*) + 230
33 QtCore 0x000000011a86cc3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
34 QtCore 0x000000011a9f6521 QTimerInfoList::activateTimers() + 961
35 libqcocoa.dylib 0x0000000129eb34a5 0x129e9b000 + 99493
36 com.apple.CoreFoundation 0x00007fff31ccfd52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
37 com.apple.CoreFoundation 0x00007fff31ccfcf1 __CFRunLoopDoSource0 + 103
38 com.apple.CoreFoundation 0x00007fff31ccfb0b __CFRunLoopDoSources0 + 209
39 com.apple.CoreFoundation 0x00007fff31cce83a __CFRunLoopRun + 927
40 com.apple.CoreFoundation 0x00007fff31ccde3e CFRunLoopRunSpecific + 462
41 com.apple.HIToolbox 0x00007fff308faabd RunCurrentEventLoopInMode + 292
42 com.apple.HIToolbox 0x00007fff308fa7d5 ReceiveNextEventCommon + 584
43 com.apple.HIToolbox 0x00007fff308fa579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
44 com.apple.AppKit 0x00007fff2ef40039 _DPSNextEvent + 883
45 com.apple.AppKit 0x00007fff2ef3e880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
46 com.apple.AppKit 0x00007fff2ef3058e -[NSApplication run] + 658
47 libqcocoa.dylib 0x0000000129eb40ac 0x129e9b000 + 102572
48 QtCore 0x000000011a876326 QEventLoop::exec(QFlags) + 486
49 QtCore 0x000000011a86d235 QCoreApplication::exec() + 133
50 QtWidgets.abi3.so 0x000000011cba4d9a meth_QApplication_exec(_object*, _object*) + 90
51 org.python.python 0x000000010b1b37ea cfunction_call + 90
52 org.python.python 0x000000010b14e3b1 _PyObject_MakeTpCall + 129
53 org.python.python 0x000000010b27c3e7 _PyEval_EvalFrameDefault + 60455
54 org.python.python 0x000000010b26c47a PyEval_EvalCode + 282
55 org.python.python 0x000000010b266ce3 builtin_exec + 483
56 org.python.python 0x000000010b1b4144 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
57 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
58 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
59 org.python.python 0x000000010b3196fd pymain_run_module + 253
60 org.python.python 0x000000010b3191c1 Py_RunMain + 2225
61 org.python.python 0x000000010b31a17b pymain_main + 43
62 org.python.python 0x000000010b31a14a Py_Main + 42
63 edu.ucsf.cgl.ChimeraX 0x000000010b096d9a main + 122
64 libdyld.dylib 0x00007fff6bd3dcc9 start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6be87b96 kevent64 + 10
1 QtWebEngineCore 0x0000000122397a2a 0x11e437000 + 66456106
2 QtWebEngineCore 0x0000000122397927 0x11e437000 + 66455847
3 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
4 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
5 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
6 QtWebEngineCore 0x000000012231e2ad 0x11e437000 + 65958573
7 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
8 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
9 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 2:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6be87b96 kevent64 + 10
1 QtWebEngineCore 0x0000000122397a2a 0x11e437000 + 66456106
2 QtWebEngineCore 0x0000000122397927 0x11e437000 + 66455847
3 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
4 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
5 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
6 QtWebEngineCore 0x000000012125c3a2 0x11e437000 + 48386978
7 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
8 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
9 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 4:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000012235dd1b 0x11e437000 + 66219291
3 QtWebEngineCore 0x000000012442b92d 0x11e437000 + 100616493
4 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
5 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 5:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 6:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6be87b96 kevent64 + 10
1 QtWebEngineCore 0x0000000122397a2a 0x11e437000 + 66456106
2 QtWebEngineCore 0x0000000122397927 0x11e437000 + 66455847
3 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
4 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
5 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
6 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
7 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
8 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 8:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 9:: NetworkService
0 libsystem_kernel.dylib 0x00007fff6be87b96 kevent64 + 10
1 QtWebEngineCore 0x0000000122397a2a 0x11e437000 + 66456106
2 QtWebEngineCore 0x0000000122397927 0x11e437000 + 66455847
3 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
4 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
5 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
6 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
7 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
8 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x000000012232a7bf 0x11e437000 + 66009023
4 QtWebEngineCore 0x000000012232b26c 0x11e437000 + 66011756
5 QtWebEngineCore 0x000000012232aecd 0x11e437000 + 66010829
6 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
7 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 13:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 14:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 15:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 16:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 18:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 19:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff6be853d6 poll + 10
1 select.cpython-311-darwin.so 0x000000010bf1f6a5 select_poll_poll + 149
2 org.python.python 0x000000010b15fe18 method_vectorcall_FASTCALL + 104
3 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
4 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
5 org.python.python 0x000000010b15271f method_vectorcall + 207
6 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b152816 method_vectorcall + 454
9 org.python.python 0x000000010b38ab26 thread_run + 230
10 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
12 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b17d0af calliter_iternext + 79
7 org.python.python 0x000000010b27a78d _PyEval_EvalFrameDefault + 53197
8 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
9 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
10 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
11 org.python.python 0x000000010b152816 method_vectorcall + 454
12 org.python.python 0x000000010b38ab26 thread_run + 230
13 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
14 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
15 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 23:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306272 PyThread_acquire_lock_timed + 434
3 _queue.cpython-311-darwin.so 0x000000012bc154b3 _queue_SimpleQueue_get_impl + 211
4 _queue.cpython-311-darwin.so 0x000000012bc15174 _queue_SimpleQueue_get + 196
5 org.python.python 0x000000010b1b4565 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 101
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b27f54a _PyEval_EvalFrameDefault + 73098
9 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
10 org.python.python 0x000000010b152816 method_vectorcall + 454
11 org.python.python 0x000000010b38ab26 thread_run + 230
12 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
13 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 24:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff31ccfef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff31cce9c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff31ccde3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2f0e1954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 25:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 26:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x000000012232a7bf 0x11e437000 + 66009023
4 QtWebEngineCore 0x000000012232af9a 0x11e437000 + 66011034
5 QtWebEngineCore 0x000000012232ae0d 0x11e437000 + 66010637
6 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
7 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 27:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x000000012232a7bf 0x11e437000 + 66009023
4 QtWebEngineCore 0x000000012232b26c 0x11e437000 + 66011756
5 QtWebEngineCore 0x000000012232addd 0x11e437000 + 66010589
6 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
7 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 28:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x0000000122365bef 0x11e437000 + 66251759
4 QtWebEngineCore 0x000000012229b1c9 0x11e437000 + 65421769
5 QtWebEngineCore 0x0000000122314a5c 0x11e437000 + 65919580
6 QtWebEngineCore 0x00000001222cc998 0x11e437000 + 65624472
7 QtWebEngineCore 0x0000000122336eb8 0x11e437000 + 66059960
8 QtWebEngineCore 0x000000012233704a 0x11e437000 + 66060362
9 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
10 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 29:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x000000012232a7bf 0x11e437000 + 66009023
4 QtWebEngineCore 0x000000012232b26c 0x11e437000 + 66011756
5 QtWebEngineCore 0x000000012232ae6d 0x11e437000 + 66010733
6 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
7 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 30:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 QtCore 0x000000011aa018eb 0x11a7ff000 + 2107627
3 QtCore 0x000000011aa0185e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000011d9f8e0d QFileInfoGatherer::run() + 125
5 QtCore 0x000000011a9f7663 0x11a7ff000 + 2066019
6 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 31:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x00000001102a567f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 32:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x00000001102a567f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 33:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x00000001102a567f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 34:
0 libsystem_pthread.dylib 0x00007fff6bf3db68 start_wqthread + 0
Thread 35:
0 libsystem_pthread.dylib 0x00007fff6bf3db68 start_wqthread + 0
Thread 36:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6be7edfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6be7f170 mach_msg + 60
2 QtWebEngineCore 0x0000000122365e26 0x11e437000 + 66252326
3 QtWebEngineCore 0x000000012232a7bf 0x11e437000 + 66009023
4 QtWebEngineCore 0x000000012232af9a 0x11e437000 + 66011034
5 QtWebEngineCore 0x000000012232ae6d 0x11e437000 + 66010733
6 QtWebEngineCore 0x000000012235e908 0x11e437000 + 66222344
7 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 37:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010b389d9e acquire_timed + 318
4 org.python.python 0x000000010b389fdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010b15fb07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b152816 method_vectorcall + 454
9 org.python.python 0x000000010b38ab26 thread_run + 230
10 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
12 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 38:
0 libsystem_kernel.dylib 0x00007fff6be81882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6bf42425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b306214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010b389d9e acquire_timed + 318
4 org.python.python 0x000000010b389fdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010b15fb07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010b27c2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2824d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b152816 method_vectorcall + 454
9 org.python.python 0x000000010b38ab26 thread_run + 230
10 org.python.python 0x000000010b305ea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff6bf42109 _pthread_start + 148
12 libsystem_pthread.dylib 0x00007fff6bf3db8b thread_start + 15
Thread 39:
0 libsystem_pthread.dylib 0x00007fff6bf3db68 start_wqthread + 0
Thread 40:
0 libsystem_pthread.dylib 0x00007fff6bf3db68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010ff1cdc0 rcx: 0x00007fd17c6dd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fd17c6dda10 rsp: 0x00007fd17c6dd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000010ff1cdc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x000000013f3f2e01 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6be8533a rfl: 0x0000000000000246 cr2: 0x000000010b48c720
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10bf2e000 - 0x10c03dfff +unicodedata.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/unicodedata.cpython-311-darwin.so
0x10c04e000 - 0x10c051fff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x10c05e000 - 0x10c171fff +libarrays.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10c49e000 - 0x10c4a5ffb +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x10c4b2000 - 0x10c965fe3 +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x10cade000 - 0x10d120fef +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x10d15b000 - 0x10d1a8fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10d1b2000 - 0x10d1c2ff7 +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x10f1d4000 - 0x10f1efffb +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
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0x10f214000 - 0x10f227fff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
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0x10f36c000 - 0x10f38bff3 +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
0x10f4a4000 - 0x10f4b7ff3 +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
0x10f4c4000 - 0x10f537ff3 +mtrand.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/mtrand.cpython-311-darwin.so
0x10f59c000 - 0x10f5bbff3 +bit_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/bit_generator.cpython-311-darwin.so
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0x10f648000 - 0x10f86fe87 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/libcrypto.1.1.dylib
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0x10fa24000 - 0x10fa77ffb +_bounded_integers.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_bounded_integers.cpython-311-darwin.so
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0x10facc000 - 0x10fad7ff7 +_philox.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_philox.cpython-311-darwin.so
0x10faec000 - 0x10fafbff3 +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
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0x10fb28000 - 0x10fbb7ffb +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
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0x10fe52000 - 0x10fee3f47 dyld (750.6) /usr/lib/dyld
0x10ff57000 - 0x113c75667 +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x119f37000 - 0x119f5affb +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x11a473000 - 0x11a5f6ffb +QtCore.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x11a7ff000 - 0x11ad02927 +QtCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x11c94f000 - 0x11c966ff3 +sip.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/sip.cpython-311-darwin.so
0x11c97f000 - 0x11cc2aff3 +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
0x11cf8f000 - 0x11d44afff +QtWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
0x11d5a7000 - 0x11dc4efe7 +QtGui (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
0x11dd7b000 - 0x11de06ff3 +QtDBus (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
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0x7fff6ace8000 - 0x7fff6acfaff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff6acfb000 - 0x7fff6acfcff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff6acfd000 - 0x7fff6aee7ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
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0x7fff6b0dd000 - 0x7fff6b137ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff6b138000 - 0x7fff6b13bffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff6b13c000 - 0x7fff6b149ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff6b14f000 - 0x7fff6b231fff libxml2.2.dylib (33.5) /usr/lib/libxml2.2.dylib
0x7fff6b235000 - 0x7fff6b25dfff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff6b25e000 - 0x7fff6b270ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff6bb1f000 - 0x7fff6bb24ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff6bb25000 - 0x7fff6bb30fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff6bb31000 - 0x7fff6bb38fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6bb39000 - 0x7fff6bb42ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6bb43000 - 0x7fff6bbd5fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff6bce2000 - 0x7fff6bd22ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6bd23000 - 0x7fff6bd59fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff6bd5a000 - 0x7fff6bd5affb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6bd5b000 - 0x7fff6bd67ff3 libkxld.dylib (6153.141.2) /usr/lib/system/libkxld.dylib
0x7fff6bd68000 - 0x7fff6bd68ff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib
0x7fff6bd69000 - 0x7fff6bd6eff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6bd6f000 - 0x7fff6bd71ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6bd72000 - 0x7fff6bd73ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6bd74000 - 0x7fff6bd8bff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6bd8c000 - 0x7fff6bd8cff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6bd8d000 - 0x7fff6be14fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6be15000 - 0x7fff6be18ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff6be19000 - 0x7fff6be1cfff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6be1d000 - 0x7fff6be25fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6be26000 - 0x7fff6be2dfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6be2e000 - 0x7fff6be2fffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6be30000 - 0x7fff6be7dff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6be7e000 - 0x7fff6beaaff7 libsystem_kernel.dylib (6153.141.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff6beab000 - 0x7fff6bef2fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6bef3000 - 0x7fff6bf1afff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6bf1b000 - 0x7fff6bf28ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6bf29000 - 0x7fff6bf32ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6bf33000 - 0x7fff6bf3bfef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6bf3c000 - 0x7fff6bf46fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6bf47000 - 0x7fff6bf4bff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6bf4c000 - 0x7fff6bf4efff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6bf4f000 - 0x7fff6bf56ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6bf57000 - 0x7fff6bf6dff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff6bf6f000 - 0x7fff6bf74ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6bf75000 - 0x7fff6bfaaffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 42
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 41108
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=2.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 1204K 3
CG image 548K 35
CoreAnimation 5048K 63
CoreGraphics 8K 1
CoreImage 40K 6
CoreUI image data 3616K 31
Foundation 20K 2
Image IO 28K 3
Kernel Alloc Once 1432K 4
MALLOC 1.0G 1315
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 4
OpenGL GLSL 384K 4
STACK GUARD 160K 40
Stack 364.8M 41
Stack Guard 56.0M 1
VM_ALLOCATE 248.6M 269
__DATA 66.1M 616
__DATA_CONST 76K 6
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 421.4M 278
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 643.3M 590
__UNICODE 564K 1
mapped file 427.7M 73
shared memory 2876K 31
=========== ======= =======
TOTAL 3.6G 3437
TOTAL, minus reserved VM space 3.2G 3437
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/melissashehata/Downloads/Hb_wt (1).pdb"
Hb_wt (1).pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt (1).pdb #1
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt (1).pdb #1
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open "/Users/melissashehata/Downloads/Hb_wt (1).pdb"
Hb_wt (1).pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt (1).pdb #2
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt (1).pdb #2
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open "/Users/melissashehata/Downloads/Hb_wt (1).pdb"
Hb_wt (1).pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt (1).pdb #3
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt (1).pdb #3
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open /Users/melissashehata/Downloads/Hb_wt.pdb
Hb_wt.pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt.pdb #4
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt.pdb #4
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open /Users/melissashehata/Downloads/Hb_wt.pdb
Hb_wt.pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt.pdb #5
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt.pdb #5
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open "/Users/melissashehata/Downloads/Hb_wt (1).pdb"
Hb_wt (1).pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt (1).pdb #6
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt (1).pdb #6
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open "/Users/melissashehata/Downloads/Hb_wt (1).pdb"
Hb_wt (1).pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt (1).pdb #7
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt (1).pdb #7
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open /Users/melissashehata/Downloads/Hb_SC.pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #8
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #8
---
HEM — protoporphyrin IX containing Fe (HEME)
> log metadata #1
Metadata for Hb_wt (1).pdb #1
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #1
Chain information for Hb_wt (1).pdb #1
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #2
Metadata for Hb_wt (1).pdb #2
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #2
Chain information for Hb_wt (1).pdb #2
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #3
Metadata for Hb_wt (1).pdb #3
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #3
Chain information for Hb_wt (1).pdb #3
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #4
Metadata for Hb_wt.pdb #4
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #4
Chain information for Hb_wt.pdb #4
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #5
Metadata for Hb_wt.pdb #5
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #5
Chain information for Hb_wt.pdb #5
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #6
Metadata for Hb_wt (1).pdb #6
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #6
Chain information for Hb_wt (1).pdb #6
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #7
Metadata for Hb_wt (1).pdb #7
---
Title | The crystal structure of human deoxyhaemoglobin At 1.74 angstroms
resolution
Citation | The crystal structure of human deoxyhaemoglobin At 1.74 aresolution
PMID: 6726807
Non-standard residues | HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
Source (natural) | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 1.74Å
> log chains #7
Chain information for Hb_wt (1).pdb #7
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
> log metadata #8
Metadata for Hb_SC.pdb #8
---
Title | Crystal structure of deoxy-human hemoglobin Β6 glu->TRP
Citation | Crystal structure of deoxy-human hemoglobin Β6 glu -->TRP.
Implications for the structure and formation of thesickle cell fiber. PMID:
9830011
Non-standard residue | HEM — protoporphyrin IX containing Fe (HEME)
Gene source | Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 2.00Å
> log chains #8
Chain information for Hb_SC.pdb #8
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
> view clip false
> show target m
> hide target m
> show target m
> ui tool show "Selection Inspector"
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_wt (1).pdb, chain B (#1) with Hb_wt (1).pdb, chain B (#2),
sequence alignment score = 789.7
RMSD between 146 pruned atom pairs is 0.000 angstroms; (across all 146 pairs:
0.000)
> matchmaker #!8 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_wt (1).pdb, chain B (#1) with Hb_SC.pdb, chain B (#8), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> matchmaker #!8 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_wt (1).pdb, chain B (#1) with Hb_SC.pdb, chain B (#8), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A #1/C #2/A #2/C #3/A #3/C #4/A #4/C #5/A #5/C #6/A #6/C
> #7/A #7/C #8/A #8/C
Alignment identifier is 1
> ui tool show "Show Sequence Viewer"
> sequence chain #8/B #8/D
Alignment identifier is 2
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #1/D #2/B #2/D #3/B #3/D #4/B #4/D #5/B #5/D #6/B #6/D
> #7/B #7/D
Alignment identifier is 1
> sequence chain #8/B #8/D
Alignment identifier is 3
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #1/D #2/B #2/D #3/B #3/D #4/B #4/D #5/B #5/D #6/B #6/D
> #7/B #7/D
Alignment identifier is 1
> sequence chain #8/B #8/D
Alignment identifier is 3
> hide #!6 models
> hide #!5 models
> hide #!4 models
> hide #!3 models
> hide #!2 models
> hide #!1 models
> view clip false
> help help:user/tools/sequenceviewer.html
> ui tool show "Show Sequence Viewer"
> sequence chain #8/B #8/D
Alignment identifier is 3
> ui tool show Matchmaker
> matchmaker #!8 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_wt (1).pdb, chain B (#1) with Hb_SC.pdb, chain B (#8), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> matchmaker #!8 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_wt (1).pdb, chain B (#1) with Hb_SC.pdb, chain B (#8), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> ui tool show "Side View"
> ui tool show "File History"
> ui tool show "Command Line Interface"
> ui tool show "Model Panel"
> ui autostart false "Model Panel"
> ui dockable false "Model Panel"
> ui tool show "Model Panel"
> close #1-6
> select #8/B,D:9-10
22 atoms, 20 bonds, 4 residues, 1 model selected
> select #8/B,D:9-17
130 atoms, 132 bonds, 18 residues, 1 model selected
> select #8/B,D:4-41,50-76,85-93,99-117,123-143
1720 atoms, 1758 bonds, 228 residues, 1 model selected
> select #8/B,D:100
14 atoms, 14 bonds, 2 residues, 1 model selected
> select #8/B,D:100-117
284 atoms, 290 bonds, 36 residues, 1 model selected
> select #8/B,D:99-100
30 atoms, 30 bonds, 4 residues, 1 model selected
> select #8/B,D:99-117
300 atoms, 306 bonds, 38 residues, 1 model selected
> color sel blue
> ui windowfill toggle
> hide sel cartoons
> hide sel atoms
> hide sel cartoons
> hide sel atoms
> hide sel cartoons
> hide sel surfaces
> hide sel atoms
> close session
> open /Users/melissashehata/Downloads/Hb_SC.pdb format pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #1
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #1
---
HEM — protoporphyrin IX containing Fe (HEME)
> open /Users/melissashehata/Downloads/Hb_wt.pdb
Hb_wt.pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt.pdb #2
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt.pdb #2
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open /Users/melissashehata/Downloads/Hb_SC.pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #3
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #3
---
HEM — protoporphyrin IX containing Fe (HEME)
> open /Users/melissashehata/Downloads/Hb_SC.pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #4
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #4
---
HEM — protoporphyrin IX containing Fe (HEME)
> open "/Users/melissashehata/Library/Mobile
> Documents/com~apple~CloudDocs/Downloads/Hb_wt.pdb"
Hb_wt.pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt.pdb #5
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt.pdb #5
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> ui tool show Matchmaker
> matchmaker #!5 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_SC.pdb, chain B (#1) with Hb_wt.pdb, chain B (#5), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_SC.pdb, chain B (#1) with Hb_wt.pdb, chain B (#2), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_SC.pdb, chain B (#1) with Hb_wt.pdb, chain B (#2), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #1/D #3/B #3/D #4/B #4/D
Alignment identifier is 1
> sequence chain #2/B #2/D #5/B #5/D
Alignment identifier is 2
> select #1/B,D:4-41,50-76,85-93,99-117,123-143
> #3/B,D:4-41,50-76,85-93,99-117,123-143
> #4/B,D:4-41,50-76,85-93,99-117,123-143
5160 atoms, 5274 bonds, 684 residues, 3 models selected
> hide sel atoms
> show sel atoms
> hide sel atoms
> hide sel cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #1/D #3/B #3/D #4/B #4/D
Alignment identifier is 1
> sequence chain #2/B #2/D #5/B #5/D
Alignment identifier is 2
> select #2/B,D:1-2 #5/B,D:1-2
68 atoms, 68 bonds, 8 residues, 2 models selected
> select #2/B,D:1 #5/B,D:1
28 atoms, 24 bonds, 4 residues, 2 models selected
> select #2/B,D:1-2 #5/B,D:1-2
68 atoms, 68 bonds, 8 residues, 2 models selected
> select #2/B,D:1 #5/B,D:1
28 atoms, 24 bonds, 4 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [1] RMSD: 0.000
> select #2/B,D:4 #5/B,D:4
28 atoms, 24 bonds, 4 residues, 2 models selected
> select #2/B,D:4-41 #5/B,D:4-41
1192 atoms, 1220 bonds, 152 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [4-41] RMSD: 0.000
> color sel red
> select #1/B,D:4 #3/B,D:4 #4/B,D:4
42 atoms, 36 bonds, 6 residues, 3 models selected
> select #1/B,D:4-41 #3/B,D:4-41 #4/B,D:4-41
1818 atoms, 1872 bonds, 228 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [4-41] RMSD: 0.000
> select #1/B,D:58 #3/B,D:58 #4/B,D:58
42 atoms, 42 bonds, 6 residues, 3 models selected
> select #1/B,D:58-61 #3/B,D:58-61 #4/B,D:58-61
192 atoms, 192 bonds, 24 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [58-61] RMSD: 0.000
> select #1/B,D:4 #3/B,D:4 #4/B,D:4
42 atoms, 36 bonds, 6 residues, 3 models selected
> select #1/B,D:4-41 #3/B,D:4-41 #4/B,D:4-41
1818 atoms, 1872 bonds, 228 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [4-41] RMSD: 0.000
> color sel blue
> color sel medium blue
> color sel orange
> color sel blue
> color sel yellow
> select #1/B,D:4-41,50-76,85-93,99-117,123-143
> #3/B,D:4-41,50-76,85-93,99-117,123-143
> #4/B,D:4-41,50-76,85-93,99-117,123-143
5160 atoms, 5274 bonds, 684 residues, 3 models selected
> select #1/B,D:6 #3/B,D:6 #4/B,D:6
84 atoms, 90 bonds, 6 residues, 3 models selected
> select #1/B,D:6-9 #3/B,D:6-9 #4/B,D:6-9
228 atoms, 234 bonds, 24 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [6-9] RMSD: 0.000
> select #1/B,D:50 #3/B,D:50 #4/B,D:50
42 atoms, 36 bonds, 6 residues, 3 models selected
> select #1/B,D:50-60 #3/B,D:50-60 #4/B,D:50-60
462 atoms, 468 bonds, 66 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [50-60] RMSD: 0.000
> color sel blue
> select #1/B,D:4-41,50-76,85-93,99-117,123-143
> #3/B,D:4-41,50-76,85-93,99-117,123-143
> #4/B,D:4-41,50-76,85-93,99-117,123-143
5160 atoms, 5274 bonds, 684 residues, 3 models selected
> select #1/B,D:2-3 #3/B,D:2-3 #4/B,D:2-3
108 atoms, 108 bonds, 12 residues, 3 models selected
> select #1/B,D:2-7 #3/B,D:2-7 #4/B,D:2-7
330 atoms, 348 bonds, 36 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [2-7] RMSD: 0.000
> select #1/B,D:4 #3/B,D:4 #4/B,D:4
42 atoms, 36 bonds, 6 residues, 3 models selected
> select #1/B,D:4-41 #3/B,D:4-41 #4/B,D:4-41
1818 atoms, 1872 bonds, 228 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [4-41] RMSD: 0.000
> color sel yellow
> select #2/B,D:61 #5/B,D:61
36 atoms, 32 bonds, 4 residues, 2 models selected
> select #2/B,D:61-76 #5/B,D:61-76
448 atoms, 452 bonds, 64 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [61-76] RMSD: 0.000
> color sel blue
> color sel yellow
> hide sel atoms
> show sel atoms
> hide sel cartoons
> show sel cartoons
> color sel bynucleotide
> ui mousemode right "delete markers"
> select #2/B,D:64 #5/B,D:64
16 atoms, 12 bonds, 4 residues, 2 models selected
> select #2/B,D:64-71 #5/B,D:64-71
228 atoms, 228 bonds, 32 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [64-71] RMSD: 0.000
> select #2/B,D:61 #5/B,D:61
36 atoms, 32 bonds, 4 residues, 2 models selected
> select #2/B,D:61-76 #5/B,D:61-76
448 atoms, 452 bonds, 64 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [61-76] RMSD: 0.000
> ui mousemode right "delete markers"
> undo
> select #2/B,D:61 #5/B,D:61
36 atoms, 32 bonds, 4 residues, 2 models selected
> select #2/B,D:61-62 #5/B,D:61-62
56 atoms, 52 bonds, 8 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [61-62] RMSD: 0.000
> select #2/B,D:78 #5/B,D:78
32 atoms, 28 bonds, 4 residues, 2 models selected
> select #2/B,D:78-83 #5/B,D:78-83
180 atoms, 176 bonds, 24 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [78-83] RMSD: 0.000
> select #2/B,D:136 #5/B,D:136
16 atoms, 12 bonds, 4 residues, 2 models selected
> select #2/B,D:136-141 #5/B,D:136-141
148 atoms, 144 bonds, 24 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [136-141] RMSD: 0.000
> select #2/B,D:78 #5/B,D:78
32 atoms, 28 bonds, 4 residues, 2 models selected
> select #2/B,D:78-82 #5/B,D:78-82
164 atoms, 160 bonds, 20 residues, 2 models selected
Hemoglobin (Deoxy) (Β Chain) [ID: 2] region 4 chains [78-82] RMSD: 0.000
> select #1/B,D:79 #3/B,D:79 #4/B,D:79
48 atoms, 42 bonds, 6 residues, 3 models selected
> select #1/B,D:79-85 #3/B,D:79-85 #4/B,D:79-85
330 atoms, 330 bonds, 42 residues, 3 models selected
Hemoglobin B [ID: 1] region 6 chains [79-85] RMSD: 0.000
> hide sel atoms
> hide sel cartoons
> hide sel atoms
> close session
> open /Users/melissashehata/Downloads/Hb_SC.pdb format pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #1
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #1
---
HEM — protoporphyrin IX containing Fe (HEME)
> open "/Users/melissashehata/Library/Mobile
> Documents/com~apple~CloudDocs/Downloads/Hb_wt.pdb"
Hb_wt.pdb title:
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]
Chain information for Hb_wt.pdb #2
---
Chain | Description | UniProt
A C | hemoglobin (deoxy) (α chain) | HBA_HUMAN 1-141
B D | hemoglobin (deoxy) (β chain) | HBB_HUMAN 1-146
Non-standard residues in Hb_wt.pdb #2
---
HEM — protoporphyrin IX containing Fe (HEME)
PO4 — phosphate ion
> open /Users/melissashehata/Downloads/Hb_SC.pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #3
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #3
---
HEM — protoporphyrin IX containing Fe (HEME)
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_SC.pdb, chain B (#1) with Hb_wt.pdb, chain B (#2), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Hb_SC.pdb, chain B (#1) with Hb_wt.pdb, chain B (#2), sequence
alignment score = 771.5
RMSD between 146 pruned atom pairs is 0.316 angstroms; (across all 146 pairs:
0.316)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #1/D #3/B #3/D
Alignment identifier is 1
> sequence chain #2/B #2/D
Alignment identifier is 2
> select #1/B,D:4-41,50-76,85-93,99-117,123-143
> #3/B,D:4-41,50-76,85-93,99-117,123-143
3440 atoms, 3516 bonds, 456 residues, 2 models selected
> select #2/B,D:4
14 atoms, 12 bonds, 2 residues, 1 model selected
> select #2/B,D:4-41
596 atoms, 610 bonds, 76 residues, 1 model selected
> color sel red
> select #1/B,D:4 #3/B,D:4
28 atoms, 24 bonds, 4 residues, 2 models selected
> select #1/B,D:4-41 #3/B,D:4-41
1212 atoms, 1248 bonds, 152 residues, 2 models selected
Hemoglobin B [ID: 1] region 4 chains [4-41] RMSD: 0.000
> color sel blue
> save /Users/melissashehata/Desktop/image1.png supersample 3
> save /Users/melissashehata/Desktop/image2.png supersample 3
> ui mousemode right "clip rotate"
> select #2/B,D:4-41
596 atoms, 610 bonds, 76 residues, 1 model selected
> undo
> select #2/B,D:50
14 atoms, 12 bonds, 2 residues, 1 model selected
> select #2/B,D:50-60
154 atoms, 156 bonds, 22 residues, 1 model selected
> select #2/B,D:50
14 atoms, 12 bonds, 2 residues, 1 model selected
> select #2/B,D:50-76
378 atoms, 384 bonds, 54 residues, 1 model selected
> color sel blue
> close session
> open /Users/melissashehata/Downloads/Hb_SC.pdb format pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #1
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #1
---
HEM — protoporphyrin IX containing Fe (HEME)
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
Failed opening file
/Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json:
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
Failed opening file
/Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json:
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
Failed opening file
/Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json:
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> close session
> open /Users/melissashehata/Downloads/Hb_SC.pdb format pdb
Hb_SC.pdb title:
Crystal structure of deoxy-human hemoglobin Β6 glu->TRP [more info...]
Chain information for Hb_SC.pdb #1
---
Chain | Description | UniProt
A C | hemoglobin A | HBA_HUMAN 1-141
B D | hemoglobin B | HBB_HUMAN 1-146
Non-standard residues in Hb_SC.pdb #1
---
HEM — protoporphyrin IX containing Fe (HEME)
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
Failed opening file
/Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json:
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
Chain information for
ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
#2
---
Chain | Description
A | No description available
> open "/Users/melissashehata/Downloads/1scj - Pro-Subtilisin E7.pdb"
1scj - Pro-Subtilisin E7.pdb title:
Crystal structure of subtilisin-propeptide complex [more info...]
Chain information for 1scj - Pro-Subtilisin E7.pdb #3
---
Chain | Description | UniProt
A | serine protease | SUBT_BACSU 1-275
B | serine protease | SUBT_BACSU 307-377
Non-standard residues in 1scj - Pro-Subtilisin E7.pdb #3
---
CA — calcium ion
> open "/Users/melissashehata/Downloads/1scj - Pro-Subtilisin E7.pdb"
1scj - Pro-Subtilisin E7.pdb title:
Crystal structure of subtilisin-propeptide complex [more info...]
Chain information for 1scj - Pro-Subtilisin E7.pdb #4
---
Chain | Description | UniProt
A | serine protease | SUBT_BACSU 1-275
B | serine protease | SUBT_BACSU 307-377
Non-standard residues in 1scj - Pro-Subtilisin E7.pdb #4
---
CA — calcium ion
> select
12795 atoms, 12316 bonds, 46 pseudobonds, 2362 residues, 7 models selected
> hide (#2#!1,3-4 & sel) target a
> hide sel atoms
> close session
> open "/Users/melissashehata/Downloads/1scj - Pro-Subtilisin E7.pdb" format
> pdb
1scj - Pro-Subtilisin E7.pdb title:
Crystal structure of subtilisin-propeptide complex [more info...]
Chain information for 1scj - Pro-Subtilisin E7.pdb #1
---
Chain | Description | UniProt
A | serine protease | SUBT_BACSU 1-275
B | serine protease | SUBT_BACSU 307-377
Non-standard residues in 1scj - Pro-Subtilisin E7.pdb #1
---
CA — calcium ion
> close session
> open "/Users/melissashehata/Downloads/1scj - Pro-Subtilisin E7.pdb" format
> pdb
1scj - Pro-Subtilisin E7.pdb title:
Crystal structure of subtilisin-propeptide complex [more info...]
Chain information for 1scj - Pro-Subtilisin E7.pdb #1
---
Chain | Description | UniProt
A | serine protease | SUBT_BACSU 1-275
B | serine protease | SUBT_BACSU 307-377
Non-standard residues in 1scj - Pro-Subtilisin E7.pdb #1
---
CA — calcium ion
> select
2703 atoms, 2559 bonds, 13 pseudobonds, 537 residues, 2 models selected
> hide (#!1 & sel) target a
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:27-32,44-49,89-94,121-124,148-152,175-180,198-201,205-209,213-217
329 atoms, 324 bonds, 47 residues, 1 model selected
> select /A:272
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:272-273
10 atoms, 9 bonds, 2 residues, 1 model selected
> select /A:31-32
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:31-32
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:33-34
10 atoms, 9 bonds, 2 residues, 1 model selected
> select /A:32-34
18 atoms, 17 bonds, 3 residues, 1 model selected
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> show sel atoms
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> style sel stick
Changed 8 atom styles
> style sel sphere
Changed 8 atom styles
> style sel ball
Changed 8 atom styles
> style sel sphere
Changed 8 atom styles
> style sel stick
Changed 8 atom styles
> hide sel atoms
> select /A:64
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 10 atom styles
> select /A:125
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:125
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 6 atom styles
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 8 atom styles
> close session
> open "/Users/melissashehata/Downloads/Protease sequence – Active.txt"
Unrecognized file suffix '.txt'
> open "/Users/melissashehata/Downloads/1scj - Pro-Subtilisin E7.pdb" format
> pdb
1scj - Pro-Subtilisin E7.pdb title:
Crystal structure of subtilisin-propeptide complex [more info...]
Chain information for 1scj - Pro-Subtilisin E7.pdb #1
---
Chain | Description | UniProt
A | serine protease | SUBT_BACSU 1-275
B | serine protease | SUBT_BACSU 307-377
Non-standard residues in 1scj - Pro-Subtilisin E7.pdb #1
---
CA — calcium ion
> open
> /Users/melissashehata/Downloads/ProteaseSequence_0b095/ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
#2
---
Chain | Description
A | No description available
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1scj - Pro-Subtilisin E7.pdb, chain A (#1) with
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 1287.8
RMSD between 264 pruned atom pairs is 0.330 angstroms; (across all 264 pairs:
0.330)
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1scj - Pro-Subtilisin E7.pdb, chain A (#1) with
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 1287.8
RMSD between 264 pruned atom pairs is 0.330 angstroms; (across all 264 pairs:
0.330)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/A
Alignment identifier is 2/A
> open "/Users/melissashehata/Downloads/ProteinStructure2_6202f
> 2/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json"
Failed opening file /Users/melissashehata/Downloads/ProteinStructure2_6202f
2/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json:
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> open "/Users/melissashehata/Downloads/ProteinStructure2_6202f
> 2/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json"
Failed opening file /Users/melissashehata/Downloads/ProteinStructure2_6202f
2/ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json:
ProteinStructure2_6202f_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
does not look like Mole Online json file, does not contain Channels.
> close session
> open
> /Users/melissashehata/Downloads/ProteinStructure2_6202f/ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
> format pdb
Chain information for
ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
#1
---
Chain | Description
A | No description available
> close session
> open "/Users/melissashehata/Downloads/1scj - Pro-Subtilisin E7.pdb" format
> pdb
1scj - Pro-Subtilisin E7.pdb title:
Crystal structure of subtilisin-propeptide complex [more info...]
Chain information for 1scj - Pro-Subtilisin E7.pdb #1
---
Chain | Description | UniProt
A | serine protease | SUBT_BACSU 1-275
B | serine protease | SUBT_BACSU 307-377
Non-standard residues in 1scj - Pro-Subtilisin E7.pdb #1
---
CA — calcium ion
> open
> /Users/melissashehata/Downloads/ProteaseSequence_0b095/ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
#2
---
Chain | Description
A | No description available
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1scj - Pro-Subtilisin E7.pdb, chain A (#1) with
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 1287.8
RMSD between 264 pruned atom pairs is 0.330 angstroms; (across all 264 pairs:
0.330)
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1scj - Pro-Subtilisin E7.pdb, chain A (#1) with
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 1287.8
RMSD between 264 pruned atom pairs is 0.330 angstroms; (across all 264 pairs:
0.330)
> save /Users/melissashehata/Downloads/predicted.pro-pro.known.pro-sub.cxs
> close session
> open
> /Users/melissashehata/Downloads/ProteaseSequence_0b095/ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
#1
---
Chain | Description
A | No description available
> open "/Users/melissashehata/Downloads/ProteinStructure2_6202f
> 2/ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
Chain information for
ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
#2
---
Chain | Description
A | No description available
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#1) with
ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb,
chain A (#2), sequence alignment score = 1319.1
RMSD between 264 pruned atom pairs is 0.257 angstroms; (across all 264 pairs:
0.257)
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
ProteaseSequence_0b095_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#1) with
ProteinStructure2_6202f_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb,
chain A (#2), sequence alignment score = 1319.1
RMSD between 264 pruned atom pairs is 0.257 angstroms; (across all 264 pairs:
0.257)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/A
Alignment identifier is 2/A
> select
> #2/A:25-29,36-39,93-98,110-115,155-160,187-190,214-218,241-246,264-267,271-275,279-283
397 atoms, 390 bonds, 56 residues, 1 model selected
> select #2/A:98
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:98
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 8 atom styles
> select #2/A:130
10 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/A:130
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 10 atom styles
> select #2/A:191
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:191
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 6 atom styles
> select #1/A:21
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:21
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 8 atom styles
> select #1/A:53
10 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:53
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 10 atom styles
> select #1/A:114
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:114
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 6 atom styles
> open "/Users/melissashehata/Downloads/ProteaseSequence_0b095 2/config.json"
Failed opening file /Users/melissashehata/Downloads/ProteaseSequence_0b095
2/config.json:
config.json does not look like Mole Online json file, does not contain
Channels.
> select #2/A:191
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:191
6 atoms, 5 bonds, 1 residue, 1 model selected
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.8
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,4
Processor Name: Quad-Core Intel Core i5
Processor Speed: 1.4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 1731.140.2.0.0 (iBridge: 19.16.16064.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2)
Kernel Version: Darwin 19.6.0
Time since boot: 8 days 6:42
Graphics/Displays:
Intel Iris Plus Graphics 645:
Chipset Model: Intel Iris Plus Graphics 645
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea6
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 21 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 21 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
Hi Melissa,
--Eric