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Opened 21 months ago
Closed 21 months ago
#14397 closed defect (can't reproduce)
Crash in garbage collection
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-11.7.6-x86_64-i386-64bit
ChimeraX Version: 1.7rc202312120032 (2023-12-12 00:32:40 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000700017e42000 (most recent call first):
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000700019e4e000 (most recent call first):
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x000000011c558e00 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1923 in _colorize_label
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 2294 in _layout_line
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 2334 in layout_lines
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1638 in __init__
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1643 in __init__
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1643 in __init__
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1643 in __init__
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 783 in layout_alignment
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 205 in __init__
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/tool.py", line 167 in _finalize_init
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/tool.py", line 55 in __init__
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/tool.py", line 928 in _start_seq_viewer
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/__init__.py", line 48 in run_provider
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py", line 1302 in run_provider
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/info.py", line 397 in run_provider
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/manager.py", line 258 in new_alignment
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/cmd.py", line 241 in seqalign_chain
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/show_sequences/tool.py", line 77 in show_seqs
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atom_search.ast (total: 53)
Process: ChimeraX [86645]
Path: /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.0 (1.7.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [86645]
User ID: 501
Date/Time: 2024-01-17 15:54:23.079 -0500
OS Version: macOS 11.7.6 (20G1231)
Report Version: 12
Bridge OS Version: 7.4 (20P4252)
Anonymous UUID: 9F8B78F4-B1B0-938A-9F3B-4981D759A793
Sleep/Wake UUID: 6ECA58F0-EFB7-44DF-B556-C41F97BF34FE
Time Awake Since Boot: 970000 seconds
Time Since Wake: 4900 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 10cd28000-10cd2c000 [ 16K] r-x/r-x SM=COW /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff202fd90e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2032c5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20210bd5 raise + 26
3 org.python.python 0x000000010cfb25d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff20371d7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 org.python.python 0x000000010ce618f4 tupletraverse + 52
7 org.python.python 0x000000010cfae888 gc_collect_main + 2568
8 org.python.python 0x000000010cfb0102 _PyObject_GC_Link + 306
9 org.python.python 0x000000010cfb0197 _PyObject_GC_New + 119
10 org.python.python 0x000000010ce34adb dictkeys_iter + 27
11 org.python.python 0x000000010cf0c466 _PyEval_EvalFrameDefault + 52390
12 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
13 org.python.python 0x000000010cde0670 _PyObject_FastCallDictTstate + 96
14 org.python.python 0x000000010ce6e995 slot_tp_init + 181
15 org.python.python 0x000000010ce64b4a type_call + 122
16 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
17 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
18 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
19 org.python.python 0x000000010cde0670 _PyObject_FastCallDictTstate + 96
20 org.python.python 0x000000010ce6e995 slot_tp_init + 181
21 org.python.python 0x000000010ce64b4a type_call + 122
22 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
23 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
24 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
25 org.python.python 0x000000010cde0670 _PyObject_FastCallDictTstate + 96
26 org.python.python 0x000000010ce6e995 slot_tp_init + 181
27 org.python.python 0x000000010ce64b4a type_call + 122
28 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
29 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
30 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
31 org.python.python 0x000000010cde0670 _PyObject_FastCallDictTstate + 96
32 org.python.python 0x000000010ce6e995 slot_tp_init + 181
33 org.python.python 0x000000010ce64b4a type_call + 122
34 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
35 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
36 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
37 org.python.python 0x000000010cde0670 _PyObject_FastCallDictTstate + 96
38 org.python.python 0x000000010ce6e995 slot_tp_init + 181
39 org.python.python 0x000000010ce64b4a type_call + 122
40 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
41 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
42 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
43 org.python.python 0x000000010cde0670 _PyObject_FastCallDictTstate + 96
44 org.python.python 0x000000010ce6e995 slot_tp_init + 181
45 org.python.python 0x000000010ce64b4a type_call + 122
46 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
47 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
48 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
49 org.python.python 0x000000010cde0f78 _PyVectorcall_Call + 120
50 org.python.python 0x000000010cf1154a _PyEval_EvalFrameDefault + 73098
51 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
52 org.python.python 0x000000010cde479e method_vectorcall + 334
53 org.python.python 0x000000010cde0f78 _PyVectorcall_Call + 120
54 org.python.python 0x000000010cf1154a _PyEval_EvalFrameDefault + 73098
55 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
56 org.python.python 0x000000010cde0f78 _PyVectorcall_Call + 120
57 org.python.python 0x000000010cf1154a _PyEval_EvalFrameDefault + 73098
58 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
59 org.python.python 0x000000010cde4816 method_vectorcall + 454
60 QtCore.abi3.so 0x000000011bdfef98 PyQtSlot::call(_object*, _object*) const + 40
61 QtCore.abi3.so 0x000000011bdfee9a PyQtSlot::invoke(void**, _object*, void*, bool) const + 362
62 QtCore.abi3.so 0x000000011bdffde5 PyQtSlotProxy::unislot(void**) + 85
63 QtCore.abi3.so 0x000000011bdffd5a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
64 QtCore 0x000000011c656d67 0x11c599000 + 777575
65 QtWidgets 0x000000011f20cbe1 0x11f01e000 + 2026465
66 QtCore 0x000000011c657022 0x11c599000 + 778274
67 QtWidgets 0x000000011f15053f 0x11f01e000 + 1254719
68 QtWidgets 0x000000011f1503dc 0x11f01e000 + 1254364
69 QtWidgets 0x000000011f151499 QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 185
70 QtWidgets 0x000000011f07cfd5 QWidget::event(QEvent*) + 389
71 QtWidgets 0x000000011f02aa87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
72 QtWidgets 0x000000011f02cfc2 QApplication::notify(QObject*, QEvent*) + 6002
73 QtWidgets.abi3.so 0x000000011eb471e6 sipQApplication::notify(QObject*, QEvent*) + 230
74 QtCore 0x000000011c606c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
75 QtWidgets 0x000000011f02b197 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 935
76 QtWidgets 0x000000011f09380e 0x11f01e000 + 481294
77 QtWidgets 0x000000011f092689 0x11f01e000 + 476809
78 QtWidgets 0x000000011f02aa87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
79 QtWidgets 0x000000011f02ba43 QApplication::notify(QObject*, QEvent*) + 499
80 QtWidgets.abi3.so 0x000000011eb471e6 sipQApplication::notify(QObject*, QEvent*) + 230
81 QtCore 0x000000011c606c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
82 QtGui 0x000000011f6ba6dc QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 2332
83 QtGui 0x000000011f71229c QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 444
84 libqcocoa.dylib 0x000000012bca629b 0x12bc8c000 + 107163
85 com.apple.CoreFoundation 0x00007fff20424cdc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
86 com.apple.CoreFoundation 0x00007fff20424c44 __CFRunLoopDoSource0 + 180
87 com.apple.CoreFoundation 0x00007fff204249c4 __CFRunLoopDoSources0 + 242
88 com.apple.CoreFoundation 0x00007fff204233ec __CFRunLoopRun + 893
89 com.apple.CoreFoundation 0x00007fff204229ac CFRunLoopRunSpecific + 563
90 com.apple.HIToolbox 0x00007fff2866c1f3 RunCurrentEventLoopInMode + 292
91 com.apple.HIToolbox 0x00007fff2866be26 ReceiveNextEventCommon + 284
92 com.apple.HIToolbox 0x00007fff2866bcf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
93 com.apple.AppKit 0x00007fff22c2bad2 _DPSNextEvent + 864
94 com.apple.AppKit 0x00007fff22c2a2a5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
95 com.apple.AppKit 0x00007fff22c1c5c9 -[NSApplication run] + 586
96 libqcocoa.dylib 0x000000012bca50ac 0x12bc8c000 + 102572
97 QtCore 0x000000011c610326 QEventLoop::exec(QFlags) + 486
98 QtCore 0x000000011c607235 QCoreApplication::exec() + 133
99 QtWidgets.abi3.so 0x000000011ec33d9a meth_QApplication_exec(_object*, _object*) + 90
100 org.python.python 0x000000010ce457ea cfunction_call + 90
101 org.python.python 0x000000010cde03b1 _PyObject_MakeTpCall + 129
102 org.python.python 0x000000010cf0e3e7 _PyEval_EvalFrameDefault + 60455
103 org.python.python 0x000000010cefe47a PyEval_EvalCode + 282
104 org.python.python 0x000000010cef8ce3 builtin_exec + 483
105 org.python.python 0x000000010ce46144 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
106 org.python.python 0x000000010cf0e2ef _PyEval_EvalFrameDefault + 60207
107 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
108 org.python.python 0x000000010cfab6fd pymain_run_module + 253
109 org.python.python 0x000000010cfab1c1 Py_RunMain + 2225
110 org.python.python 0x000000010cfac17b pymain_main + 43
111 org.python.python 0x000000010cfac14a Py_Main + 42
112 edu.ucsf.cgl.ChimeraX 0x000000010cd2bd9a main + 122
113 libdyld.dylib 0x00007fff20347f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010e7a867f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010e7a867f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010e7a867f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff203001b2 kevent64 + 10
1 QtWebEngineCore 0x00000001241aaa2a 0x12024a000 + 66456106
2 QtWebEngineCore 0x00000001241aa927 0x12024a000 + 66455847
3 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
4 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
5 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
6 QtWebEngineCore 0x00000001241312ad 0x12024a000 + 65958573
7 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
8 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
9 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 5:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff203001b2 kevent64 + 10
1 QtWebEngineCore 0x00000001241aaa2a 0x12024a000 + 66456106
2 QtWebEngineCore 0x00000001241aa927 0x12024a000 + 66455847
3 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
4 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
5 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
6 QtWebEngineCore 0x000000012306f3a2 0x12024a000 + 48386978
7 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
8 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
9 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x0000000124178bef 0x12024a000 + 66251759
4 QtWebEngineCore 0x00000001240ae1c9 0x12024a000 + 65421769
5 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
6 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
7 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
8 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
9 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000124170d1b 0x12024a000 + 66219291
3 QtWebEngineCore 0x000000012623e92d 0x12024a000 + 100616493
4 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
5 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 8:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x00000001240ae168 0x12024a000 + 65421672
4 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
5 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
6 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
7 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
8 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
9 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 9:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff203001b2 kevent64 + 10
1 QtWebEngineCore 0x00000001241aaa2a 0x12024a000 + 66456106
2 QtWebEngineCore 0x00000001241aa927 0x12024a000 + 66455847
3 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
4 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
5 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
6 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
7 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
8 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x0000000124178bef 0x12024a000 + 66251759
4 QtWebEngineCore 0x00000001240ae1c9 0x12024a000 + 65421769
5 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
6 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
7 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
8 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
9 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x0000000124178bef 0x12024a000 + 66251759
4 QtWebEngineCore 0x00000001240ae1c9 0x12024a000 + 65421769
5 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
6 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
7 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
8 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
9 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x00007fff203001b2 kevent64 + 10
1 QtWebEngineCore 0x00000001241aaa2a 0x12024a000 + 66456106
2 QtWebEngineCore 0x00000001241aa927 0x12024a000 + 66455847
3 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
4 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
5 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
6 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
7 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
8 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x0000000124178bef 0x12024a000 + 66251759
4 QtWebEngineCore 0x00000001240ae1c9 0x12024a000 + 65421769
5 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
6 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
7 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
8 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
9 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x000000012413d7bf 0x12024a000 + 66009023
4 QtWebEngineCore 0x000000012413e26c 0x12024a000 + 66011756
5 QtWebEngineCore 0x000000012413decd 0x12024a000 + 66010829
6 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x0000000124178bef 0x12024a000 + 66251759
4 QtWebEngineCore 0x00000001240ae1c9 0x12024a000 + 65421769
5 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
6 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
7 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
8 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
9 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 16:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20424ebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2042359f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204229ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22db1b7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 17:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x0000000124178bef 0x12024a000 + 66251759
4 QtWebEngineCore 0x00000001240ae1c9 0x12024a000 + 65421769
5 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
6 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
7 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
8 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
9 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x000000012413d7bf 0x12024a000 + 66009023
4 QtWebEngineCore 0x000000012413df9a 0x12024a000 + 66011034
5 QtWebEngineCore 0x000000012413de0d 0x12024a000 + 66010637
6 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 19:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 QtCore 0x000000011c79b8eb 0x11c599000 + 2107627
3 QtCore 0x000000011c79b85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000011fa87e0d QFileInfoGatherer::run() + 125
5 QtCore 0x000000011c791663 0x11c599000 + 2066019
6 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 20:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x000000012413d7bf 0x12024a000 + 66009023
4 QtWebEngineCore 0x000000012413e26c 0x12024a000 + 66011756
5 QtWebEngineCore 0x000000012413dddd 0x12024a000 + 66010589
6 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 21:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 QtCore 0x000000011c79b8eb 0x11c599000 + 2107627
3 QtCore 0x000000011c79b85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000011fa87e0d QFileInfoGatherer::run() + 125
5 QtCore 0x000000011c791663 0x11c599000 + 2066019
6 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 22:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x000000012413d7bf 0x12024a000 + 66009023
4 QtWebEngineCore 0x000000012413e26c 0x12024a000 + 66011756
5 QtWebEngineCore 0x000000012413dddd 0x12024a000 + 66010589
6 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 23:: CacheThread_BlockFile
0 libsystem_kernel.dylib 0x00007fff203001b2 kevent64 + 10
1 QtWebEngineCore 0x00000001241aaa2a 0x12024a000 + 66456106
2 QtWebEngineCore 0x00000001241aa927 0x12024a000 + 66455847
3 QtWebEngineCore 0x0000000124127a5c 0x12024a000 + 65919580
4 QtWebEngineCore 0x00000001240df998 0x12024a000 + 65624472
5 QtWebEngineCore 0x0000000124149eb8 0x12024a000 + 66059960
6 QtWebEngineCore 0x000000012414a04a 0x12024a000 + 66060362
7 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
8 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 24:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x000000012413d7bf 0x12024a000 + 66009023
4 QtWebEngineCore 0x000000012413e26c 0x12024a000 + 66011756
5 QtWebEngineCore 0x000000012413de6d 0x12024a000 + 66010733
6 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 25:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff202f729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f760c mach_msg + 60
2 QtWebEngineCore 0x0000000124178e26 0x12024a000 + 66252326
3 QtWebEngineCore 0x000000012413d7bf 0x12024a000 + 66009023
4 QtWebEngineCore 0x000000012413e26c 0x12024a000 + 66011756
5 QtWebEngineCore 0x000000012413de6d 0x12024a000 + 66010733
6 QtWebEngineCore 0x0000000124171908 0x12024a000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 26:
0 libsystem_pthread.dylib 0x00007fff20328420 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff20328420 start_wqthread + 0
Thread 28:
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010cf98214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010d01bd9e acquire_timed + 318
4 org.python.python 0x000000010d01bfdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010cdf1b07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010cf0e2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
8 org.python.python 0x000000010cde4816 method_vectorcall + 454
9 org.python.python 0x000000010d01cb26 thread_run + 230
10 org.python.python 0x000000010cf97ea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 29:
0 libsystem_kernel.dylib 0x00007fff202f9cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032ce49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010cf98214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010d01bd9e acquire_timed + 318
4 org.python.python 0x000000010d01bfdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010cdf1b07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010cf0e2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010cf144d0 _PyEval_Vector + 128
8 org.python.python 0x000000010cde4816 method_vectorcall + 454
9 org.python.python 0x000000010d01cb26 thread_run + 230
10 org.python.python 0x000000010cf97ea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff2032c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20328443 thread_start + 15
Thread 30:
0 libsystem_pthread.dylib 0x00007fff20328420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011c558e00 rcx: 0x00007fc3c0ddd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007fc3c0ddda10 rsp: 0x00007fc3c0ddd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000011c558e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00000001417b1a01 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff202fd90e rfl: 0x0000000000000246 cr2: 0x000000010d10ceaa
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
ff ff ff ff 48 89 d8 48-8b 00 48 ff c2 48 39 c3 ....H..H..H..H9.
75 f5 48 8d 3d c5 12 16-00 48 8d b5 70 ff ff ff u.H.=....H..p...
31 c0 e8 bf 83 fe ff 48-8b 05 68 e7 16 00 48 8b 1......H..h...H.
00 48 3b 45 d8 75 0d 48-83 c4 70 5b 41 5c 41 5e .H;E.u.H..p[A\A^
41 5f 5d c3 e8 cd ae 0e-00 66 2e 0f 1f 84 00 00 A_]......f......
00 00 00 0f 1f 00 55 48-89 e5 53 50 48 8b 47 08 ......UH..SPH.G.
[f6]80 a9 00 00 00 40 75-09 31 c0 48 83 c4 08 5b ......@u.1.H...[ /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/MacOS/ChimeraX
0x10cd3a000 - 0x10d11dfff +org.python.python (3.11.2, [c] 2001-2023 Python Software Foundation. - 3.11.2) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
0x10d67a000 - 0x10d685fff +math.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/math.cpython-311-darwin.so
0x10d796000 - 0x10d7a5fff +_datetime.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_datetime.cpython-311-darwin.so
0x10d7ba000 - 0x10d7bdfff +_typing.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_typing.cpython-311-darwin.so
0x10d8ca000 - 0x10d8d1fff +zlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/zlib.cpython-311-darwin.so
0x10d8e2000 - 0x10d8e5fff +_bz2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
0x10d8f2000 - 0x10d921fff +_lzma.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_lzma.cpython-311-darwin.so
0x10d936000 - 0x10d939fff +_bisect.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bisect.cpython-311-darwin.so
0x10d946000 - 0x10d949fff +_random.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_random.cpython-311-darwin.so
0x10d956000 - 0x10d95dfff +_sha512.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_sha512.cpython-311-darwin.so
0x10da6a000 - 0x10da71fff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x10da7e000 - 0x10da85fff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x10da96000 - 0x10da99fff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x10daa6000 - 0x10daa9fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x10dab6000 - 0x10dabdfff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x10dbca000 - 0x10dbcdfff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x10dbda000 - 0x10dcedfff +libarrays.dylib (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10dd1a000 - 0x10dd21fff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7-rc2023.12.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
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0x7fff6dfa4000 - 0x7fff6e08bfff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f611000 - 0x7fff6f623fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff7393d000 - 0x7fff73948fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73b5e000 - 0x7fff73b76fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77485000 - 0x7fff7748cfff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 14.3M 81
CG raster data 13.6M 23
CoreAnimation 36.7M 101
CoreGraphics 12K 2
CoreUI image data 3972K 32
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 657.2M 492
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 120K 30
Stack 196.7M 31
Stack Guard 56.0M 1
VM_ALLOCATE 177.8M 207
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 38.1M 644
__DATA_CONST 28.8M 319
__DATA_DIRTY 1729K 223
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 532.1M 255
__OBJC_RO 70.2M 1
__OBJC_RW 2496K 2
__TEXT 673.8M 632
__UNICODE 588K 1
mapped file 610.5M 78
shared memory 2968K 25
=========== ======= =======
TOTAL 3.2G 3214
TOTAL, minus reserved VM space 3.1G 3214
===== Log before crash start =====
UCSF ChimeraX version: 1.7rc202312120032 (2023-12-12)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/shariquekhan/Downloads/result/out_with_h.pdb
Summary of feedback from opening
/Users/shariquekhan/Downloads/result/out_with_h.pdb
---
warning | Ignored bad PDB record found on line 1
# structure generated by PRAS
Chain information for out_with_h.pdb #1
---
Chain | Description
? | No description available
> save /Users/shariquekhan/Downloads/sd.fa
No alignments open!
> open /Users/shariquekhan/Downloads/untitled_8320/4kpu.pdb
4kpu.pdb title:
Electron transferring flavoprotein of acidaminococcus fermentans: towards A
mechanism of flavin-based electron bifurcation [more info...]
Chain information for 4kpu.pdb #2
---
Chain | Description | UniProt
A | electron transfer flavoprotein α subunit | D2RIQ3_ACIFV 1-340
B | electron transfer flavoprotein α/β-subunit | D2RIQ2_ACIFV 1-263
Non-standard residues in 4kpu.pdb #2
---
CL — chloride ion
FAD — flavin-adenine dinucleotide
> select sequence A1-A340
Nothing selected
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> select clear
> select #2/A:3-340
2580 atoms, 2627 bonds, 338 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> ui tool show "Show Sequence Viewer"
> sequence chain #2/B
Alignment identifier is 2/B
> select #2/B:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/B:1-263
1981 atoms, 2008 bonds, 263 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> ui tool show "Modeller Comparative"
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> ui tool show ViewDockX
No suitable models found for ViewDockX
> select clear
> select ::name="CL"::name="FAD"::name="HOH"
704 atoms, 116 bonds, 600 residues, 1 model selected
> select clear
> ui tool show "Model Panel"
> ui tool show "Model Loops"
No alignments chosen for modeling
> select clear
> select #1/?
9295 atoms, 9375 bonds, 609 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> close session
> open /Users/shariquekhan/Downloads/untitled_8320/4kpu.pdb format pdb
4kpu.pdb title:
Electron transferring flavoprotein of acidaminococcus fermentans: towards A
mechanism of flavin-based electron bifurcation [more info...]
Chain information for 4kpu.pdb #1
---
Chain | Description | UniProt
A | electron transfer flavoprotein α subunit | D2RIQ3_ACIFV 1-340
B | electron transfer flavoprotein α/β-subunit | D2RIQ2_ACIFV 1-263
Non-standard residues in 4kpu.pdb #1
---
CL — chloride ion
FAD — flavin-adenine dinucleotide
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> toolshed show
> ui tool show Contacts
> contacts ignoreHiddenModels true select true reveal true
5374 contacts
> undo
> close session
> open /Users/shariquekhan/Downloads/untitled_8320/4kpu.pdb format pdb
4kpu.pdb title:
Electron transferring flavoprotein of acidaminococcus fermentans: towards A
mechanism of flavin-based electron bifurcation [more info...]
Chain information for 4kpu.pdb #1
---
Chain | Description | UniProt
A | electron transfer flavoprotein α subunit | D2RIQ3_ACIFV 1-340
B | electron transfer flavoprotein α/β-subunit | D2RIQ2_ACIFV 1-263
Non-standard residues in 4kpu.pdb #1
---
CL — chloride ion
FAD — flavin-adenine dinucleotide
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> style sel stick
Changed 106 atom styles
> close session
> open /Users/shariquekhan/Downloads/pro18_noFAD.pdb
Chain information for pro18_noFAD.pdb #1
---
Chain | Description
A | No description available
B | No description available
> open /Users/shariquekhan/Downloads/pro20_noFAD.pdb
Chain information for pro20_noFAD.pdb #2
---
Chain | Description
A | No description available
B | No description available
> close session
> open /Users/shariquekhan/Downloads/pro20_noFAD.pdb
Chain information for pro20_noFAD.pdb #1
---
Chain | Description
A | No description available
B | No description available
> select /A
5276 atoms, 5329 bonds, 346 residues, 1 model selected
> select /B
4019 atoms, 4046 bonds, 263 residues, 1 model selected
> close session
> open /Users/shariquekhan/Downloads/untitled_8320/4kpu.pdb format pdb
4kpu.pdb title:
Electron transferring flavoprotein of acidaminococcus fermentans: towards A
mechanism of flavin-based electron bifurcation [more info...]
Chain information for 4kpu.pdb #1
---
Chain | Description | UniProt
A | electron transfer flavoprotein α subunit | D2RIQ3_ACIFV 1-340
B | electron transfer flavoprotein α/β-subunit | D2RIQ2_ACIFV 1-263
Non-standard residues in 4kpu.pdb #1
---
CL — chloride ion
FAD — flavin-adenine dinucleotide
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> getcrd
Missing or invalid "atoms" argument: empty atom specifier
> distance
Missing or invalid "objects" argument: empty atom specifier
> close session
> open /Users/shariquekhan/Downloads/pro20_noFAD.pdb format pdb
Chain information for pro20_noFAD.pdb #1
---
Chain | Description
A | No description available
B | No description available
> ui tool show "Build Structure"
> open
> "[(2R,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxytetrahydro-2-furanyl]methyl
> (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl
> dihydrogen diphosph ate" fromDatabase iupac
Translated IUPAC name to SMILES string via Cambridge web service (IUPAC:
[(2R,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxytetrahydro-2-furanyl]methyl
(2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl
dihydrogen diphosph ate)
Translated SMILES to 3D structure via NCI web service (SMILES:
O(P(OC[C@H]([C@H]([C@H](CN1C2=C(N=C3C(NC(N=C13)=O)=O)C=C(C(=C2)C)C)O)O)O)(=O)OP(=O)(O)O)C[C@H]2O[C@H]([C@@H]([C@@H]2O)O)N2C1=NC=NC(=C1N=C2)N)
> select ::name="UNL"
86 atoms, 91 bonds, 1 residue, 1 model selected
> ui tool show ViewDockX
No suitable models found for ViewDockX
> ui tool show AlphaFold
> alphafold predict #1/A
Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.
Running AlphaFold prediction
> select ::name="UNL"
86 atoms, 91 bonds, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:1-3
43 atoms, 42 bonds, 3 residues, 1 model selected
> select #1/A
5276 atoms, 5329 bonds, 346 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B
Alignment identifier is 1/B
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.7rc202312120032 (2023-12-12)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.14
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,4
Processor Name: Quad-Core Intel Core i5
Processor Speed: 1.4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 1968.100.17.0.0 (iBridge: 20.16.4252.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.7.6 (20G1231)
Kernel Version: Darwin 20.6.0
Time since boot: 78 days 1:32
Graphics/Displays:
Intel Iris Plus Graphics 645:
Chipset Model: Intel Iris Plus Graphics 645
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea6
Revision ID: 0x0001
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.13.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.1
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7rc202312120032
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.13
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.3
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.2
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.0
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.46.0
funcparserlib: 2.0.0a0
glfw: 2.6.3
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.5.0
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.3
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.8
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
Pillow: 10.0.1
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.41
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.7
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.5
sphinxcontrib-htmlhelp: 2.0.4
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.6
sphinxcontrib-serializinghtml: 1.1.9
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.3
urllib3: 2.1.0
wcwidth: 0.2.12
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 21 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 21 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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