Opened 21 months ago
Closed 21 months ago
#14416 closed defect (duplicate)
Session restore: No module named 'lz4._version'
Reported by: | Owned by: | Greg Couch | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Sessions | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.19044 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "E:/sui lab/tom/tomnew/1207/sun/TOMB.pdb" Chain information for TOMB.pdb #1 --- Chain | Description A | No description available D | No description available G | No description available H | No description available I | No description available K | No description available > open "E:/sui lab/tom/tomnew/1207/sun/7VD2B.pdb" Chain information for 7VD2B.pdb #2 --- Chain | Description A | No description available D | No description available G | No description available H | No description available I | No description available > set bgColor white > lighting simple > lighting soft > hide atoms > show cartoons > color #1 #ffff7f transparency 0 > color #1 yellow transparency 0 > color #1 #ffff7f transparency 0 > color #1 yellow transparency 0 > graphics silhouettes true > color #2 #aaaaff transparency 0 [Repeated 1 time(s)] > select #1/H:60 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 193 atoms, 192 bonds, 39 residues, 1 model selected > select up 337 atoms, 336 bonds, 68 residues, 1 model selected > color sel magenta > color sel hot pink > select clear > select #2/H:68 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 256 atoms, 262 bonds, 32 residues, 1 model selected > select up 631 atoms, 635 bonds, 60 residues, 1 model selected > ui tool show "Color Actions" > color sel medium purple > select clear > select #2/H:72 11 atoms, 11 bonds, 1 residue, 1 model selected > select up 256 atoms, 262 bonds, 32 residues, 1 model selected > select up 631 atoms, 635 bonds, 60 residues, 1 model selected > ui tool show "Color Actions" > color sel slate blue > color sel medium slate blue > color sel medium purple > color sel medium slate blue > color sel slate blue > color sel medium slate blue > select clear > turn x 90 [Repeated 3 time(s)] > save "E:/sui lab/tom/tomnew/1207/sun/b1.png" width 1336 height 776 > supersample 3 > turn x 90 [Repeated 2 time(s)] > save "E:/sui lab/tom/tomnew/1207/sun/b2.png" width 1336 height 776 > supersample 3 > hide #1 models > hide #2 models > open "E:/sui lab/tom/tomnew/1207/sun/7VD2A.pdb" Chain information for 7VD2A.pdb #3 --- Chain | Description B | No description available C | No description available E | No description available F | No description available J | No description available > open "E:/sui lab/tom/tomnew/1207/sun/TOMA.pdb" Chain information for TOMA.pdb #4 --- Chain | Description B | No description available C | No description available E | No description available F | No description available J | No description available > hide #3-4 atoms > show #3-4 cartoons > color #4 #aaffff transparency 0 > color #4 #9bfdff transparency 0 > color #4 #a5ffeb transparency 0 > color #4 #a0faff transparency 0 > color #4 #aaffff transparency 0 > color #4 #9dfff7 transparency 0 > color #4 #a9fff1 transparency 0 > color #4 #b5fff9 transparency 0 > color #3 #aaaaff transparency 0 > hide #3 models > select #4/C:60 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 183 atoms, 182 bonds, 37 residues, 1 model selected > select up 317 atoms, 316 bonds, 63 residues, 1 model selected > color sel cyan > select clear > hide #4 models > show #3 models > select #3/C:64 4 atoms, 3 bonds, 1 residue, 1 model selected > select up 261 atoms, 267 bonds, 33 residues, 1 model selected > select up 582 atoms, 587 bonds, 60 residues, 1 model selected > ui tool show "Color Actions" > color sel slate blue > select clear > show #4 models > ui tool show Matchmaker > matchmaker #3 to #4 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker TOMA.pdb, chain B (#4) with 7VD2A.pdb, chain B (#3), sequence alignment score = 1447.4 RMSD between 277 pruned atom pairs is 0.649 angstroms; (across all 286 pairs: 0.780) > turn x 90 [Repeated 3 time(s)] > save "E:/sui lab/tom/tomnew/1207/sun/b3.png" width 1336 height 776 > supersample 3 > turn x 90 [Repeated 2 time(s)] > save "E:/sui lab/tom/tomnew/1207/sun/b4.png" width 1336 height 776 > supersample 3 > show #2 models > show #1 models > hide #4 models > hide #3 models > hide #2 models > hide #1 models > show #3 models > show #4 models > show #2 models > show #1 models > hide #1 models > hide #2 models > show #2 models > hide #2 models > show #2 models > hide #2 models > show #2 models > show #1 models > hide #3 models > hide #4 models No map chosen to save > show #3 models > show #4 models > save "E:/sui lab/tom/tomnew/1207/sun/f4.cxs" Traceback (most recent call last): File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py", line 36, in run results = command.run(text, log=log, return_json=return_json) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2856, in run result = ci.function(session, **kw_args) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2856, in run result = ci.function(session, **kw_args) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py", line 89, in provider_save saver_info.save(session, path, **provider_kw) File "D:\ChimeraX 1.3\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py", line 884, in save output = open_func(path) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py", line 879, in lz4_open import lz4.frame File "D:\ChimeraX 1.3\bin\lib\site-packages\lz4\\__init__.py", line 14, in <module> from ._version import ( # noqa: F401 ModuleNotFoundError: No module named 'lz4._version' ModuleNotFoundError: No module named 'lz4._version' File "D:\ChimeraX 1.3\bin\lib\site-packages\lz4\\__init__.py", line 14, in from ._version import ( # noqa: F401 See log for complete Python traceback. > save "E:/sui lab/tom/tomnew/1207/sun/2.cxs" Traceback (most recent call last): File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py", line 36, in run results = command.run(text, log=log, return_json=return_json) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2856, in run result = ci.function(session, **kw_args) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2856, in run result = ci.function(session, **kw_args) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py", line 89, in provider_save saver_info.save(session, path, **provider_kw) File "D:\ChimeraX 1.3\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py", line 884, in save output = open_func(path) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py", line 879, in lz4_open import lz4.frame File "D:\ChimeraX 1.3\bin\lib\site-packages\lz4\\__init__.py", line 14, in <module> from ._version import ( # noqa: F401 ModuleNotFoundError: No module named 'lz4._version' ModuleNotFoundError: No module named 'lz4._version' File "D:\ChimeraX 1.3\bin\lib\site-packages\lz4\\__init__.py", line 14, in from ._version import ( # noqa: F401 See log for complete Python traceback. > save "E:/sui lab/tom/tomnew/1207/sun/4.cxs" Traceback (most recent call last): File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py", line 36, in run results = command.run(text, log=log, return_json=return_json) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2856, in run result = ci.function(session, **kw_args) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2856, in run result = ci.function(session, **kw_args) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py", line 89, in provider_save saver_info.save(session, path, **provider_kw) File "D:\ChimeraX 1.3\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py", line 884, in save output = open_func(path) File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py", line 879, in lz4_open import lz4.frame File "D:\ChimeraX 1.3\bin\lib\site-packages\lz4\\__init__.py", line 14, in <module> from ._version import ( # noqa: F401 ModuleNotFoundError: No module named 'lz4._version' ModuleNotFoundError: No module named 'lz4._version' File "D:\ChimeraX 1.3\bin\lib\site-packages\lz4\\__init__.py", line 14, in from ._version import ( # noqa: F401 See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 517.00 OpenGL renderer: NVIDIA GeForce RTX 2060/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: LENOVO Model: 82AX OS: Microsoft Windows 10 家庭中文版 (Build 19044) Memory: 17,040,195,584 MaxProcessMemory: 137,438,953,344 CPU: 16 Intel(R) Core(TM) i7-10875H CPU @ 2.30GHz OSLanguage: zh-CN Locale: ('zh_CN', 'cp936') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1
Change History (2)
comment:1 by , 21 months ago
Component: | Unassigned → Sessions |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Session restore: No module named 'lz4._version' |
comment:2 by , 21 months ago
Resolution: | → duplicate |
---|---|
Status: | assigned → closed |
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Duplicate of #10408