Opened 21 months ago

Closed 21 months ago

#14515 closed defect (not a bug)

Logged a lot of contacts

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Structure Analysis Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "S:\weismanlab\Lily Hahn\All materials for Manuscript\ChimeraX\updated
> 111724_siteII_.cxs" format session

Opened cryosparc_P122_J2162_map_sharp (1).mrc as #1, grid size 256,256,256,
pixel 1.09, shown at level 0.189, step 1, values float32  
Opened 011724_SDII.tif as #3, grid size 256,256,256, pixel 1.09, shown at
level 0.00552, step 1, values float32  
Log from Wed Jan 17 23:08:39 2024UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 2f6h

2f6h title:  
Myosin V cargo binding domain [more info...]  
  
Chain information for 2f6h #1  
---  
Chain | Description | UniProt  
X | Myosin-2 | MYO2_YEAST 22-440  
  
Drag select of 390 residues, 3 pseudobonds  
[Repeated 1 time(s)]

> show sel surfaces

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 2f6h_X SES surface #1.2: minimum, -19.39, mean -2.53,
maximum 14.61  
To also show corresponding color key, enter the above coulombic command and
add key true  
Drag select of 2f6h_X SES surface, 49427 of 351608 triangles, 88 residues  
Drag select of 2f6h_X SES surface, 61051 of 351608 triangles, 109 residues  
Drag select of 2f6h_X SES surface, 44460 of 351608 triangles, 89 residues  
Drag select of 2f6h_X SES surface, 35298 of 351608 triangles, 50 residues  

> hide sel surfaces

> show sel atoms

> hide sel atoms

> select /X:431

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select clear

[Repeated 1 time(s)]

> close session

> open C:/Users/hjhahn/Downloads/AF-Q9Y2I7-F1-model_v4.pdb

AF-Q9Y2I7-F1-model_v4.pdb title:  
Alphafold monomer V2.0 prediction for 1-phosphatidylinositol 3-phosphate
5-kinase (Q9Y2I7) [more info...]  
  
Chain information for AF-Q9Y2I7-F1-model_v4.pdb #1  
---  
Chain | Description | UniProt  
A | 1-phosphatidylinositol 3-phosphate 5-kinase | FYV1_HUMAN 1-2098  
  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> renumber #1/A start 297

2098 residues renumbered  

> renumber #1/A start 1

2098 residues renumbered  

> select /A:1480

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1480-1517

312 atoms, 316 bonds, 38 residues, 1 model selected  

> select /A:1297-1298

18 atoms, 17 bonds, 2 residues, 1 model selected  

> select /A:1291-1298

64 atoms, 63 bonds, 8 residues, 1 model selected  

> select clear

> select /A:151-180

265 atoms, 273 bonds, 30 residues, 1 model selected  

> select /A:151-180

265 atoms, 273 bonds, 30 residues, 1 model selected  

> select /A:1759

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:1759-2083

2614 atoms, 2664 bonds, 325 residues, 1 model selected  

> select /A:2084

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select /A:1759-2084

2625 atoms, 2676 bonds, 326 residues, 1 model selected  

> color sel cyan

> select clear

> select #1/A 1759-2084

Expected a keyword  

> select #1/A: 1759-2084

2625 atoms, 2676 bonds, 326 residues, 1 model selected  

> color #1/A: 1759-2084 red

> select clear

> select /A:2085

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:2085-2098

108 atoms, 111 bonds, 14 residues, 1 model selected  

> hide sel cartoons

> select /A:1755-1785

237 atoms, 239 bonds, 31 residues, 1 model selected  

> select /A:721-1785

8416 atoms, 8603 bonds, 1065 residues, 1 model selected  

> hide sel cartoons

> undo

[Repeated 2 time(s)]Drag select of 1923 residues  

> select clear

> show #1/A: 1759-2084

> hide atoms

> show #1/A: 1759-2084 target s

> hide surfaces

> show #1/A: 1759-2084

> hide atoms

Drag select of 841 residues  

> select clear

> show ~#1/A: 1759-2084

> show ~#1/A: 1759-2084 target r

[Repeated 2 time(s)]

> show #1/A: 1759-2084 target r

> ~show ~#1/A: 1759-2084 target r

> ~show #1/A: 1759-2084 target r

[Repeated 1 time(s)]

> show #1/A: 1759-2084 target r

> show cartoons

> select #1/A: 1759-2084

2625 atoms, 2676 bonds, 326 residues, 1 model selected  

> show sel surfaces

> hide sel surfaces

> select clear

> select #1/A: 1500, 1600, 1700

21 atoms, 18 bonds, 3 residues, 1 model selected  

> show sel atoms

> style sel sphere

Changed 21 atom styles  

> hide sel atoms

> show sel atoms

> color (#!1 & sel) medium blue

> select #1/A: 1500

7 atoms, 6 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) blue

> color (#!1 & sel) white

> select clear

Drag select of 9 residues  

> close session

> open "S:/weismanlab/Lily Hahn/PIKFyve/PVF analysis 120823.cxs"

Opened emd_22634.map as #1, grid size 400,400,400, pixel 1.05, shown at level
0.00647, step 1, values float32  
Opened job862_Kinase_postprocess_6.7A (1).mrc as #4, grid size 400,400,400,
pixel 1.05, shown at level 0.00781, step 1, values float32  
Opened job866_VF_postprocess_5.06A.mrc as #5, grid size 400,400,400, pixel
1.05, shown at level 0.0122, step 1, values float32  
Log from Fri Dec 8 16:03:28 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "S:/weismanlab/Lily Hahn/All materials for
> Manuscript/ChimeraX/Inp2_Mmr1_Vac17 comparisons.cxs" format session

Opened postprocess.mrc as #3, grid size 256,256,256, pixel 1.09, shown at
level 0.00761, step 1, values float32  
Log from Thu Nov 30 22:13:46 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "S:\weismanlab\Lily Hahn\ChimeraX\Figure 3\Mmr1 Vac17 Inp2.cxs" format
> session

Log from Wed Nov 29 01:09:41 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> set bgColor #ffffff00

Log from Sun Nov 26 22:11:01 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> set bgColor #ffffff00

Log from Tue Nov 21 13:03:15 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "S:\weismanlab\Lily Hahn\All materials for Manuscript\ChimeraX\Fig 1C
> Mmr1 with Vac17.cxs" format session

Opened J1921.mrc as #2, grid size 256,256,256, pixel 1.09, shown at level
0.135, step 1, values float32  
Opened J1921.mrc copy as #4, grid size 256,256,256, pixel 1.09, shown at level
0.173, step 1, values float32  
Opened cryosparc_P122_J1962_001_volume_map.mrc as #5, grid size 256,256,256,
pixel 1.09, shown at level 0.0798, step 1, values float32  
Opened cryosparc_P122_J1925_map_sharp.mrc as #9, grid size 256,256,256, pixel
1.09, shown at level 0.199, step 1, values float32  
Log from Wed Nov 15 01:14:09 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "S:\weismanlab\Lily Hahn\ChimeraX\Figure 2\zoom 2A.cxs" format session

Opened J1921.mrc as #2, grid size 256,256,256, pixel 1.09, shown at level
0.135, step 1, values float32  
Opened J1921.mrc copy as #4, grid size 256,256,256, pixel 1.09, shown at level
0.173, step 1, values float32  
Opened cryosparc_P122_J1962_001_volume_map.mrc as #5, grid size 256,256,256,
pixel 1.09, shown at level 0.0798, step 1, values float32  
Opened cryosparc_P122_J1925_map_sharp.mrc as #9, grid size 256,256,256, pixel
1.09, shown at level 0.202, step 1, values float32  
Log from Mon Nov 13 13:33:43 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> set bgColor #ffffff00

Log from Thu Oct 26 14:56:39 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\Users\lilyh\Desktop\Myo2 Manuscript Figures\Mmr1 Vac17_.cxs" format
> session

Opened J1921.mrc as #2, grid size 256,256,256, pixel 1.09, shown at level
0.135, step 1, values float32  
Opened J1921.mrc copy as #4, grid size 256,256,256, pixel 1.09, shown at level
0.173, step 1, values float32  
Opened cryosparc_P122_J1962_001_volume_map.mrc as #5, grid size 256,256,256,
pixel 1.09, shown at level 0.0798, step 1, values float32  
Log from Thu Oct 26 13:12:19 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "S:\weismanlab\Lily Hahn\Official Powerpoints\Chimera photos\Mmr1
> Vac17.cxs" format session

Opened J1921.mrc as #2, grid size 256,256,256, pixel 1.09, shown at level
0.135, step 1, values float32  
Opened J1921.mrc copy as #4, grid size 256,256,256, pixel 1.09, shown at level
0.173, step 1, values float32  
Opened cryosparc_P122_J1962_001_volume_map.mrc as #5, grid size 256,256,256,
pixel 1.09, shown at level 0.0798, step 1, values float32  
Log from Thu Oct 26 00:23:33 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\Users\lilyh\Desktop\Myo2 Manuscript Figures\Figure 1_102523.cxs"
> format session

Opened J1921.mrc as #2, grid size 256,256,256, pixel 1.09, shown at level
0.135, step 1, values float32  
Opened J1921.mrc copy as #4, grid size 256,256,256, pixel 1.09, shown at level
0.173, step 1, values float32  
Opened cryosparc_P122_J1962_001_volume_map.mrc as #5, grid size 256,256,256,
pixel 1.09, shown at level 0.0798, step 1, values float32  
Log from Wed Oct 25 10:37:53 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> set bgColor transparent

Log from Tue Oct 24 23:04:00 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\Users\lilyh\Desktop\Vac17-Myo2 Reconstructions\particle reverted
> .cxs" format session

Opened cryosparc_P122_J1828_002_volume_map_sharp.mrc as #1, grid size
256,256,256, pixel 1.09, shown at level 0.142, step 1, values float32  
Opened cryosparc_P122_J1791_002_volume_map.mrc as #3, grid size 256,256,256,
pixel 1.09, shown at level 0.0799, step 1, values float32  
Opened cryosparc_P122_J1792_001_volume_map.mrc as #4, grid size 256,256,256,
pixel 1.09, shown at level 0.0605, step 1, values float32  
Opened cryosparc_P122_J1786_001_volume_map_sharp.mrc as #5, grid size
256,256,256, pixel 1.09, shown at level 0.114, step 1, values float32  
Opened cryosparc_P122_J1738_001_volume_map_sharp.mrc as #7, grid size
256,256,256, pixel 1.09, shown at level 0.108, step 1, values float32  
Opened cryosparc_P122_J1737_001_volume_map_sharp.mrc as #9, grid size
256,256,256, pixel 1.09, shown at level 0.107, step 1, values float32  
Opened cryosparc_P122_J1704_002_volume_map_sharp.mrc as #10, grid size
256,256,256, pixel 1.09, shown at level 0.0889, step 1, values float32  
Opened cryosparc_P122_J1702_002_volume_map_sharp.mrc as #12, grid size
256,256,256, pixel 1.09, shown at level 0.112, step 1, values float32  
Opened cryosparc_P122_J1694_002_volume_map_sharp.mrc as #14, grid size
256,256,256, pixel 1.09, shown at level 0.0941, step 1, values float32  
Log from Sun Oct 15 20:38:01 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\Users\lilyh\Desktop\Vac17-Myo2 Reconstructions\Annotated J1808.cxs"
> format session

Opened cryosparc_P122_J1808_map_sharp.mrc as #1, grid size 256,256,256, pixel
1.09, shown at level 0.153, step 1, values float32  
Opened cryosparc_P122_J1573_001_volume_map_sharp.mrc as #2, grid size
256,256,256, pixel 1.09, shown at level 0.192, step 1, values float32  
Opened cryosparc_P122_J1809_map_sharp.mrc as #3, grid size 256,256,256, pixel
1.09, shown at level 0.192, step 1, values float32  
Opened cryosparc_P122_J1807_map_sharp.mrc as #4, grid size 256,256,256, pixel
1.09, shown at step 1, values float32  
Log from Sun Oct 15 16:20:36 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:/Users/lilyh/Desktop/Vac17-Myo2 Reconstructions/Annotated J1808.cxs"

Opened cryosparc_P122_J1808_map_sharp.mrc as #1, grid size 256,256,256, pixel
1.09, shown at level 0.153, step 1, values float32  
Opened cryosparc_P122_J1573_001_volume_map_sharp.mrc as #2, grid size
256,256,256, pixel 1.09, shown at level 0.192, step 1, values float32  
Opened cryosparc_P122_J1809_map_sharp.mrc as #3, grid size 256,256,256, pixel
1.09, shown at level 0.192, step 1, values float32  
Opened cryosparc_P122_J1807_map_sharp.mrc as #4, grid size 256,256,256, pixel
1.09, shown at step 1, values float32  
Log from Sun Oct 15 15:05:42 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\Users\lilyh\Desktop\Vac17-Myo2 Reconstructions\Annotated J1808.cxs"
> format session

Opened cryosparc_P122_J1808_map_sharp.mrc as #1, grid size 256,256,256, pixel
1.09, shown at level 0.153, step 1, values float32  
Opened cryosparc_P122_J1573_001_volume_map_sharp.mrc as #2, grid size
256,256,256, pixel 1.09, shown at level 0.192, step 1, values float32  
Opened cryosparc_P122_J1809_map_sharp.mrc as #3, grid size 256,256,256, pixel
1.09, shown at level 0.192, step 1, values float32  
Opened cryosparc_P122_J1807_map_sharp.mrc as #4, grid size 256,256,256, pixel
1.09, shown at step 1, values float32  
Log from Sun Oct 15 14:29:16 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:/Users/lilyh/Desktop/Vac17-Myo2 Reconstructions/j1268 j1664 vac17
> refinement.cxs"

Opened cryosparc_P122_J1747_001_volume_map_sharp.mrc as #1, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1748_001_volume_map_sharp.mrc as #2, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1746_001_volume_map_sharp.mrc as #3, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1737_001_volume_map_sharp.mrc as #4, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1738_001_volume_map_sharp.mrc as #5, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1739_001_volume_map_sharp.mrc as #6, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1701_001_volume_map_sharp.mrc as #7, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1704_002_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1703_001_volume_map_sharp.mrc as #9, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1702_002_volume_map_sharp.mrc as #10, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1791_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1786_001_volume_map_sharp.mrc as #12, grid size
256,256,256, pixel 1.09, shown at level 0.06, step 1, values float32  
Opened cryosparc_P122_J1335_002_volume_map_sharp.mrc as #13, grid size
256,256,256, pixel 1.09, shown at level 0.0938, step 1, values float32  
Opened cryosparc_P122_J1388_002_volume_map_sharp.mrc as #14, grid size
256,256,256, pixel 1.09, shown at level 0.113, step 1, values float32  
Log from Thu Oct 12 14:09:03 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1783_class_00_00012_volume.mrc

Opened cryosparc_P122_J1783_class_00_00012_volume.mrc as #1, grid size
80,80,80, pixel 3.47, shown at level 0.107, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1783_class_02_00012_volume.mrc

Opened cryosparc_P122_J1783_class_02_00012_volume.mrc as #2, grid size
80,80,80, pixel 3.47, shown at level 0.108, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1783_class_01_00012_volume.mrc

Opened cryosparc_P122_J1783_class_01_00012_volume.mrc as #3, grid size
80,80,80, pixel 3.47, shown at level 0.106, step 1, values float32  

> volume level 0.126

> volume level 0.2

> tile

3 models tiled  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1784_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1784_001_volume_map_sharp.mrc as #4, grid size
256,256,256, pixel 1.09, shown at level 0.0149, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1786_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1786_001_volume_map_sharp.mrc as #5, grid size
256,256,256, pixel 1.09, shown at level 0.017, step 1, values float32  

> hide #!2 models

> hide #!3 models

> hide #!1 models

> hide #!5 models

> show #!5 models

> volume level 0.2

> ~tile

> volume level 0.1

> hide #!5 models

> volume #4 level 0.08126

> show #!5 models

> hide #!4 models

> volume #5 level 0.07299

> volume #5 level 0.07726

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1785_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1785_001_volume_map_sharp.mrc as #6, grid size
256,256,256, pixel 1.09, shown at level 0.0203, step 1, values float32  

> hide #!5 models

> volume #5 level 0.1227

> volume #5 level 0.152

> hide #!5 models

> volume #6 level 0.09578

> volume #6 level 0.04696

> volume #5 level 0.08899

> tile

3 models tiled  

> volume #4 level 0.06434

> close #4

> ~tile

> tile

2 models tiled  

> volume #6 level 0.05269

> volume #5 level 0.06198

> volume #6 level 0.04696

> volume #6 level 0.06273

> volume #5 level 0.07903

> volume #5 level 0.07477

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1783_class_02_00012_volume.mrc

Opened cryosparc_P122_J1783_class_02_00012_volume.mrc as #4, grid size
80,80,80, pixel 3.47, shown at level 0.108, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1783_class_01_00012_volume.mrc

Opened cryosparc_P122_J1783_class_01_00012_volume.mrc as #7, grid size
80,80,80, pixel 3.47, shown at level 0.106, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1783_class_00_00012_volume.mrc

Opened cryosparc_P122_J1783_class_00_00012_volume.mrc as #8, grid size
80,80,80, pixel 3.47, shown at level 0.107, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1784_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1784_001_volume_map_sharp.mrc as #9, grid size
256,256,256, pixel 1.09, shown at level 0.0149, step 1, values float32  

> volume level 0.1

> volume level 0.2

> tile

6 models tiled  

> volume level 0.1

> volume level 0.12

> volume level 0.13

> volume level 0.1

> volume level 0.08

> volume level 0.2

> volume level 0.1

> volume level 0.12

> volume #9 level 0.07771

> volume #5 level 0.06868

> hide #!4 models

> hide #!5 models

> hide #!6 models

> show #!6 models

> show #!5 models

> hide #!8 models

> hide #!7 models

> volume #9 level 0.07046

> volume #6 level 0.06378

> volume #5 level 0.07748

> close session

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1788_class_01_00011_volume.mrc

Opened cryosparc_P122_J1788_class_01_00011_volume.mrc as #1, grid size
80,80,80, pixel 3.47, shown at level 0.132, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1788_class_03_00011_volume.mrc

Opened cryosparc_P122_J1788_class_03_00011_volume.mrc as #2, grid size
80,80,80, pixel 3.47, shown at level 0.132, step 1, values float32  

> volume level 0.12

> volume level 0.2

> volume level 0.4

> tile

2 models tiled  

> volume #1 level 0.2783

> volume #2 level 0.2253

> ~tile

> volume #2 level 0.2521

> volume #1 level 0.2329

> volume #1 level 0.2147

> volume #1 level 0.2873

> volume #2 level 0.2031

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1787_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1787_001_volume_map_sharp.mrc as #3, grid size
256,256,256, pixel 1.09, shown at level 0.0178, step 1, values float32  

> hide #!2 models

> volume #3 level 0.09925

> volume #3 level 0.07081

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1786_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1786_001_volume_map_sharp.mrc as #4, grid size
256,256,256, pixel 1.09, shown at level 0.017, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1785_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1785_001_volume_map_sharp.mrc as #5, grid size
256,256,256, pixel 1.09, shown at level 0.0203, step 1, values float32  

> ~tile

> volume level 0.4

> volume level 0.1

> tile

3 models tiled  

> close session

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1790_map_sharp.mrc

Opened cryosparc_P122_J1790_map_sharp.mrc as #1, grid size 256,256,256, pixel
1.09, shown at level 0.018, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1789_map_sharp.mrc

Opened cryosparc_P122_J1789_map_sharp.mrc as #2, grid size 256,256,256, pixel
1.09, shown at level 0.0152, step 1, values float32  

> volume level 0.1

> tile

2 models tiled  

> volume #1 level 0.05471

> volume #2 level 0.07182

> ~tile

> hide #!2 models

> hide #!1 models

> open
> C:/Users/lilyh/Desktop/output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb

Chain information for
output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb
#3  
---  
Chain | Description  
B | No description available  
C | No description available  
  
Drag select of 24 residues  

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.087607,-0.82252,-0.56195,-1.8505,0.51751,0.44445,-0.7312,1.6931,0.85118,-0.35487,0.38672,2.3051

> select clear

> show #!1 models

Drag select of 1 cryosparc_P122_J1790_map_sharp.mrc  

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.20947,0.22145,0.95241,18.61,-0.46631,-0.87875,0.10176,210.33,0.85946,-0.42281,0.28733,17.656

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.35281,0.45915,-0.8153,268.04,0.024216,0.87552,0.48258,-150.98,0.93538,0.15052,-0.32001,19.597

> view matrix models
> #1,-0.44052,-0.56917,0.69426,195.64,-0.46812,-0.51424,-0.71862,282.78,0.76603,-0.64156,-0.039909,108.59

> view matrix models
> #1,-0.11017,0.98592,0.12578,23.952,-0.17879,-0.14414,0.97327,-57.751,0.9777,0.084741,0.19215,-53.197

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.11017,0.98592,0.12578,-35.143,-0.17879,-0.14414,0.97327,-77.478,0.9777,0.084741,0.19215,-82.34

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.46849,-0.64028,0.60874,162.68,-0.45175,-0.41853,-0.78788,258.11,0.75924,-0.64411,-0.093169,88.619

> view matrix models
> #1,0.55342,0.18708,-0.81162,113.36,0.1222,-0.98214,-0.14306,155.16,-0.82389,-0.020006,-0.5664,304.5

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.55342,0.18708,-0.81162,-8.6775,0.1222,-0.98214,-0.14306,122.84,-0.82389,-0.020006,-0.5664,246.61

> view matrix models
> #1,0.55342,0.18708,-0.81162,22.497,0.1222,-0.98214,-0.14306,127.5,-0.82389,-0.020006,-0.5664,216.04

> fitmap #3 inMap #1

Fit molecule
output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb
(#3) to map cryosparc_P122_J1790_map_sharp.mrc (#1) using 4737 atoms  
average map value = 0.1224, steps = 140  
shifted from previous position = 20.6  
rotated from previous position = 23.3 degrees  
atoms outside contour = 1439, contour level = 0.05471  
  
Position of
output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb
(#3) relative to cryosparc_P122_J1790_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.80473370 0.22767627 -0.54824012 140.20818836  
-0.54644965 -0.64493948 0.53427143 134.99613144  
-0.23194076 0.72953182 0.64341814 143.53017560  
Axis 0.22737881 -0.36832749 -0.90146200  
Axis point 98.31271939 16.44105582 0.00000000  
Rotation angle (degrees) 154.57225869  
Shift along axis -147.22941488  
  

> show #!2 models

Drag select of 2 cryosparc_P122_J1789_map_sharp.mrc  

> view matrix models
> #2,-0.20947,0.22145,0.95241,-110.07,-0.46631,-0.87875,0.10176,169.04,0.85946,-0.42281,0.28733,-106.63

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.0593,-0.97269,0.22441,118.66,-0.62914,-0.21096,-0.74812,228.54,0.77503,-0.096823,-0.62446,-3.4983

> view matrix models
> #2,0.21017,0.40787,-0.88852,76.317,0.080871,-0.91296,-0.39996,168.87,-0.97431,0.012206,-0.22486,174.93

> fitmap #2 inMap #1

Fit map cryosparc_P122_J1789_map_sharp.mrc in map
cryosparc_P122_J1790_map_sharp.mrc using 62706 points  
correlation = 0.9713, correlation about mean = 0.859, overlap = 1636  
steps = 192, shift = 27.9, angle = 25.3 degrees  
  
Position of cryosparc_P122_J1789_map_sharp.mrc (#2) relative to
cryosparc_P122_J1790_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99999590 -0.00226754 -0.00176575 0.51927107  
0.00226615 0.99999717 -0.00079111 -0.17796517  
0.00176753 0.00078711 0.99999818 -0.39102706  
Axis 0.26477327 -0.59276847 0.76060546  
Axis point 93.07002574 235.18832041 0.00000000  
Rotation angle (degrees) 0.17075998  
Shift along axis -0.05443607  
  

> select clear

> hide #!2 models

> show #!2 models

> hide #!1 models

> hide #3 models

> volume #2 level 0.03961

> volume #2 level 0.07048

> open "C:/Users/lilyh/Downloads/cryosparc_P122_J1304_mask (1).mrc"

Opened cryosparc_P122_J1304_mask (1).mrc as #4, grid size 256,256,256, pixel
1.09, shown at level 5e-05, step 1, values float32  

> ~tile

> select #4

2 models selected  

> surface style #4 mesh

> select clear

> volume #2 level 0.05974

> volume #2 level 0.05169

> volume #2 level 0.04767

> volume #2 level 0.05035

> show #!1 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1787_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1787_001_volume_map_sharp.mrc as #5, grid size
256,256,256, pixel 1.09, shown at level 0.0178, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1786_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1786_001_volume_map_sharp.mrc as #6, grid size
256,256,256, pixel 1.09, shown at level 0.017, step 1, values float32  

> ~tile

> volume level 0.1

> tile

4 models tiled  

> volume #6 level 0.07067

> volume #6 level 0.08534

> volume #5 level 0.072

> volume #6 level 0.07214

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1785_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1785_001_volume_map_sharp.mrc as #7, grid size
256,256,256, pixel 1.09, shown at level 0.0203, step 1, values float32  

> tile

5 models tiled  

> volume level 0.1

> tile

5 models tiled  

> ~tile

> tile

5 models tiled  

> volume level 0.08

> volume level 0.06

> volume level 0.05

> volume level 0.055

> volume #6 level 0.07406

> volume #7 level 0.06536

> close session

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1664_class_05_00042_volume.mrc

Opened cryosparc_P122_J1664_class_05_00042_volume.mrc as #1, grid size
100,100,100, pixel 2.78, shown at level 0.0272, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1664_class_04_00042_volume.mrc

Opened cryosparc_P122_J1664_class_04_00042_volume.mrc as #2, grid size
100,100,100, pixel 2.78, shown at level 0.0261, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1664_class_03_00042_volume.mrc

Opened cryosparc_P122_J1664_class_03_00042_volume.mrc as #3, grid size
100,100,100, pixel 2.78, shown at level 0.0268, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1664_class_02_00042_volume.mrc

Opened cryosparc_P122_J1664_class_02_00042_volume.mrc as #4, grid size
100,100,100, pixel 2.78, shown at level 0.028, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1664_class_01_00042_volume.mrc

Opened cryosparc_P122_J1664_class_01_00042_volume.mrc as #5, grid size
100,100,100, pixel 2.78, shown at level 0.0248, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1664_class_00_00042_volume.mrc

Opened cryosparc_P122_J1664_class_00_00042_volume.mrc as #6, grid size
100,100,100, pixel 2.78, shown at level 0.0276, step 1, values float32  

> volume level 0.055

> volume level 0.1

> tile

6 models tiled  

> ~tile

> tile

6 models tiled  

> volume level 0.1

> volume level 0.2

> ~tile

> tile

6 models tiled  

> volume level 0.1

> volume level 0.2

> volume level 0.07

[Repeated 1 time(s)]

> ui mousemode right "translate selected models"

> ~tile

> volume level 0.3

> tile

5 models tiled  

> volume level 0.1

> volume level 0.2

> ~tile

> tile

6 models tiled  

> volume level 0.1

> volume level 0.08

> volume level 0.06

> volume level 0.08

> set bgColor white

> lighting full

> lighting simple

> lighting soft

[Repeated 1 time(s)]

> lighting full

> set bgColor white

> save C:\Users\lilyh\Desktop\image186.png supersample 3

> hide #!6 models

> hide #!5 models

> hide #!4 models

> hide #!3 models

> hide #!2 models

> hide #!1 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1768_class_05_00023_volume.mrc

Opened cryosparc_P122_J1768_class_05_00023_volume.mrc as #7, grid size
100,100,100, pixel 2.78, shown at level 0.033, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1768_class_04_00023_volume.mrc

Opened cryosparc_P122_J1768_class_04_00023_volume.mrc as #8, grid size
100,100,100, pixel 2.78, shown at level 0.0352, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1768_class_03_00023_volume.mrc

Opened cryosparc_P122_J1768_class_03_00023_volume.mrc as #9, grid size
100,100,100, pixel 2.78, shown at level 0.0365, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1768_class_02_00023_volume.mrc

Opened cryosparc_P122_J1768_class_02_00023_volume.mrc as #10, grid size
100,100,100, pixel 2.78, shown at level 0.0361, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1768_class_01_00023_volume.mrc

Opened cryosparc_P122_J1768_class_01_00023_volume.mrc as #11, grid size
100,100,100, pixel 2.78, shown at level 0.0355, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1768_class_00_00023_volume.mrc

Opened cryosparc_P122_J1768_class_00_00023_volume.mrc as #12, grid size
100,100,100, pixel 2.78, shown at level 0.0349, step 1, values float32  

> volume level 0.08

> tile

6 models tiled  

> lighting full

> volume level 0.1

> ~tile

> tile

6 models tiled  

> ui mousemode right "resize markers"

> graphics silhouettes true

> ~tile

> tile

6 models tiled  

> ~tile

> volume level 0.3

> tile

6 models tiled  

> volume level 0.3

> volume level 0.1

> ui mousemode right "rotate selected models"

> ~tile

> tile

6 models tiled  

> volume level 0.3

> tile

6 models tiled  

> volume level 0.1

> volume level 0.25

> ~tile

> tile

6 models tiled  

> volume level 0.2

> volume level 0.1

> volume level 0.08

Drag select of 10 cryosparc_P122_J1768_class_02_00023_volume.mrc , 11
cryosparc_P122_J1768_class_01_00023_volume.mrc , 12
cryosparc_P122_J1768_class_00_00023_volume.mrc  

> ui mousemode right "translate selected models"

> view matrix models
> #10,0.99271,-0.11245,0.043449,29.198,0.12027,0.94837,-0.29349,139.91,-0.0082041,0.29657,0.95497,-54.176,#11,0.99271,-0.11245,0.043449,-35.093,0.12027,0.94837,-0.29349,121.86,-0.0082041,0.29657,0.95497,-81.748,#12,0.99271,-0.11245,0.043449,-91.93,0.12027,0.94837,-0.29349,127.05,-0.0082041,0.29657,0.95497,-119.67

> select clear

> volume level 0.08

> ui mousemode right "rotate selected models"

> save C:\Users\lilyh\Desktop\image187.png supersample 3

> show #!6 models

> show #!5 models

> show #!2 models

> show #!3 models

> show #!1 models

> show #!4 models

> hide #!12 models

> hide #!11 models

> hide #!9 models

> hide #!10 models

> hide #!8 models

> hide #!7 models

> volume level 0.08

> tile

6 models tiled  

> volume level 0.08

> volume level 0.1

> tile

6 models tiled  

> volume level 0.3

> tile

5 models tiled  

> volume level 0.2

> tile

6 models tiled  

> volume level 0.08

> save C:\Users\lilyh\Desktop\image188.png supersample 3

> hide #!6 models

> hide #!5 models

> hide #!4 models

> hide #!2 models

> hide #!1 models

> hide #!3 models

> show #!10 models

> hide #!10 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1773_class_05_00022_volume.mrc

Opened cryosparc_P122_J1773_class_05_00022_volume.mrc as #13, grid size
100,100,100, pixel 2.78, shown at level 0.0444, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1773_class_04_00022_volume.mrc

Opened cryosparc_P122_J1773_class_04_00022_volume.mrc as #14, grid size
100,100,100, pixel 2.78, shown at level 0.0475, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1773_class_03_00022_volume.mrc

Opened cryosparc_P122_J1773_class_03_00022_volume.mrc as #15, grid size
100,100,100, pixel 2.78, shown at level 0.0465, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1773_class_02_00022_volume.mrc

Opened cryosparc_P122_J1773_class_02_00022_volume.mrc as #16, grid size
100,100,100, pixel 2.78, shown at level 0.0515, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1773_class_01_00022_volume.mrc

Opened cryosparc_P122_J1773_class_01_00022_volume.mrc as #17, grid size
100,100,100, pixel 2.78, shown at level 0.047, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1773_class_00_00022_volume.mrc

Opened cryosparc_P122_J1773_class_00_00022_volume.mrc as #18, grid size
100,100,100, pixel 2.78, shown at level 0.0485, step 1, values float32  

> volume level 0.08

> tile

6 models tiled  

> volume level 0.1

> volume level 0.2

> tile

6 models tiled  

> volume level 0.15

> tile

6 models tiled  

> volume level 0.1

> save C:\Users\lilyh\Desktop\image189.png supersample 3

> hide #!18 models

> hide #!17 models

> hide #!16 models

> hide #!15 models

> hide #!14 models

> hide #!13 models

> show #!18 models

> show #!16 models

> show #!17 models

> show #!15 models

> show #!14 models

> show #!13 models

> hide #!18 models

> hide #!17 models

> hide #!15 models

> hide #!16 models

> hide #!13 models

> hide #!14 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1769_class_05_00022_volume.mrc

Opened cryosparc_P122_J1769_class_05_00022_volume.mrc as #19, grid size
100,100,100, pixel 2.78, shown at level 0.0421, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1769_class_04_00022_volume.mrc

Opened cryosparc_P122_J1769_class_04_00022_volume.mrc as #20, grid size
100,100,100, pixel 2.78, shown at level 0.0369, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1769_class_03_00022_volume.mrc

Opened cryosparc_P122_J1769_class_03_00022_volume.mrc as #21, grid size
100,100,100, pixel 2.78, shown at level 0.0337, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1769_class_02_00022_volume.mrc

Opened cryosparc_P122_J1769_class_02_00022_volume.mrc as #22, grid size
100,100,100, pixel 2.78, shown at level 0.0364, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1769_class_01_00022_volume.mrc

Opened cryosparc_P122_J1769_class_01_00022_volume.mrc as #23, grid size
100,100,100, pixel 2.78, shown at level 0.037, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1769_class_00_00022_volume.mrc

Opened cryosparc_P122_J1769_class_00_00022_volume.mrc as #24, grid size
100,100,100, pixel 2.78, shown at level 0.0348, step 1, values float32  

> volume level 0.1

> tile

6 models tiled  

> volume level 0.2

> tile

6 models tiled  

> volume level 0.15

> tile

6 models tiled  

> volume level 0.12

> tile

6 models tiled  

> volume level 0.1

> save C:\Users\lilyh\Desktop\image190.png supersample 3

> hide #!24 models

> hide #!22 models

> hide #!23 models

> hide #!21 models

> hide #!19 models

> hide #!20 models

> show #!18 models

> hide #!18 models

> show #!18 models

> show #!19 models

> show #!16 models

> show #!15 models

> hide #!19 models

> show #!17 models

> show #!14 models

> show #!13 models

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> hide #!18 models

> hide #!17 models

> hide #!15 models

> hide #!16 models

> hide #!13 models

> show #!13 models

> hide #!14 models

> hide #!13 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1777_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1777_001_volume_map_sharp.mrc as #25, grid size
256,256,256, pixel 1.09, shown at level 0.0205, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1776_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1776_001_volume_map_sharp.mrc as #26, grid size
256,256,256, pixel 1.09, shown at level 0.0153, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1775_002_volume_map_sharp.mrc

Opened cryosparc_P122_J1775_002_volume_map_sharp.mrc as #27, grid size
256,256,256, pixel 1.09, shown at level 0.021, step 1, values float32  

> volume level 0.1

> volume level 0.1tile

Invalid "level" argument: Expected a number  

> tile

3 models tiled  

> tile

3 models tiled  

> color #25-27 dark gray

> volume #27 level 0.08141

> volume level 0.08

Drag select of 27 cryosparc_P122_J1775_002_volume_map_sharp.mrc  

> select clear

> save C:\Users\lilyh\Desktop\image191.png supersample 3

> hide #!27 models

> hide #!26 models

> hide #!25 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1778_class_02_00012_volume.mrc

Opened cryosparc_P122_J1778_class_02_00012_volume.mrc as #28, grid size
100,100,100, pixel 2.78, shown at level 0.0568, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1778_class_01_00012_volume.mrc

Opened cryosparc_P122_J1778_class_01_00012_volume.mrc as #29, grid size
100,100,100, pixel 2.78, shown at level 0.0571, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1778_class_00_00012_volume.mrc

Opened cryosparc_P122_J1778_class_00_00012_volume.mrc as #30, grid size
100,100,100, pixel 2.78, shown at level 0.05, step 1, values float32  

> volume level 0.08

> volume level 0.1

> volume level 0.2

> tile

3 models tiled  

> volume level 0.1

[Repeated 1 time(s)]

> tile

3 models tiled  

> volume level 0.2

> tile

3 models tiled  

> volume level 0.1

> volume level 0.15

> volume level 0.14

> volume level 0.13

> volume level 0.12

> ui mousemode right "translate selected models"

[Repeated 1 time(s)]

> ui mousemode right "rotate selected models"

> tile

3 models tiled  

> ~tile

> volume level 0.18

> tile

3 models tiled  

> volume level 0.11

> volume level 0.12

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> select #30

2 models selected  

> select clear

> save C:\Users\lilyh\Desktop\image192.png supersample 3

> hide #!29 models

> hide #!30 models

> hide #!28 models

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1787_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1787_001_volume_map_sharp.mrc as #31, grid size
256,256,256, pixel 1.09, shown at level 0.0178, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1785_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1785_001_volume_map_sharp.mrc as #32, grid size
256,256,256, pixel 1.09, shown at level 0.0203, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1784_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1784_001_volume_map_sharp.mrc as #33, grid size
256,256,256, pixel 1.09, shown at level 0.0149, step 1, values float32  

> open C:/Users/lilyh/Downloads/cryosparc_P122_J1786_001_volume_map_sharp.mrc

Opened cryosparc_P122_J1786_001_volume_map_sharp.mrc as #34, grid size
256,256,256, pixel 1.09, shown at level 0.017, step 1, values float32  

> volume level 0.12

> tile

4 models tiled  

> tile

4 models tiled  

> volume level 0.1

> volume level 0.08

> volume level 0.07

> volume level 0.06

> volume level 0.066

> volume level 0.067

> volume level 0.068

> volume level 0.069

> volume level 0.068

> volume level 0.07

> volume level 0.05

> volume level 0.06

> color #31-34 dark gray

> hide #!31 models

> show #!31 models

> hide #!31 models

[deleted to fit within ticket limits]

> show #5 models

> hide #5 models

> show #5 models

> hide #5 models

> view p2

> rainbow #8

> rainbow #8 target r

> save C:\Users\lilyh\Desktop\image231.png supersample 3

> show #8 target r

> show #8.1 models

> save C:\Users\lilyh\Desktop\image232.png supersample 3

> show #8.2 models

> hide #8.2 models

> show #8.2 models

> hide #8.2 models

> show #8.2 models

> hide #8.2 models

> undo

[Repeated 8 time(s)]

> show #5 models

> hide #5 models

> show #5 models

> hide #5 target r

> show #5/B:110-157

> show #5/B:110-157 target t r

Invalid "target" argument: Target option can only include letters a = atoms, b
= bonds, p = pseudobonds, c = cartoons, r = cartoons, s = surfaces, m =
models, got t  

> hide #5B

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide #5/B

> show #5/B:127-149

> show #5/B:127-148

> hide #!8 models

> show #!8 models

> hide #1.1 models

Drag select of 6 atoms, 7 bonds  
Drag select of 11 atoms, 12 bonds  
Drag select of 10 atoms, 10 bonds  

> hide sel atoms

> show sel atoms

> show #!6 models

> show #8.1 models

> hide #8.1 models

> show #1.1 models

> hide #1.1 models

> show #1.1 models

> hide #1.1 models

> hide #5/B:127-148

> hide #5/B:127-149

> show #5/B:127-148

> show #5/B:127-148 target t r

Invalid "target" argument: Target option can only include letters a = atoms, b
= bonds, p = pseudobonds, c = cartoons, r = cartoons, s = surfaces, m =
models, got t  

> show #5/B:127-148 target r

> show #8.1 models

> hide #8.1 models

> show #8.2 models

> hide #8.2 models

> show #!2 models

> hide #!2 models

> show #1.1 models

> hide sel atoms

Drag select of 1 cryosparc_P122_J1808_map_sharp.mrc , 146 atoms, 96 residues,
91 bonds  

> hide sel atoms

> select clear

> select add #5

4737 atoms, 4823 bonds, 585 residues, 1 model selected  

> select clear

> undo

[Repeated 5 time(s)]

> select clear

> select #5/B:127-148

177 atoms, 179 bonds, 22 residues, 1 model selected  

> hide sel atoms

> transparency #5/B:127-148 0 target r

> select clear

> transparency #5/B:127-148 0 target r

> select #5/B:127-148 0 target r

Expected a keyword  

> select #5/B:127-148 target r

Expected a keyword  

> show #5/B:127-148

> select clear

> hide #5/B:147-148

> hide #5/B:147-148 target r

> save C:\Users\lilyh\Desktop\image233.png supersample 3

> turn x 90

> turn x -90

[Repeated 1 time(s)]

> show #5/B:127-150

[Repeated 1 time(s)]Drag select of 21 atoms, 21 bonds  

> hide sel atoms

Drag select of 1 atoms, 1 bonds  
Drag select of 1 residues, 1 bonds  

> select clear

[Repeated 1 time(s)]Drag select of 3 atoms, 2 bonds  

> hide sel atoms

> select clear

[Repeated 1 time(s)]Drag select of 1 atoms  

> hide sel atoms

> show #5/B:127-148 target r

> show #5/B:127-147 target r

> hide sel atoms

> hide sel cartoons

Drag select of 1 residues  

> hide sel cartoons

> show #5/B:127-147

> show #5/B:127-147 target r

> save C:\Users\lilyh\Desktop\image234.png supersample 3

> turn x -90

> view p3

> save C:\Users\lilyh\Desktop\image235.png supersample 3

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 90 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297

Missing or invalid "percent" argument: Expected a number  

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297

Missing or invalid "percent" argument: Expected a number  

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 90

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 0

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85

> transparency #8/A 0 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 50 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 0 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 30 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 0 target r

> select #1

2 models selected  

> surface style #1 mesh

> select clear

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 75 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 65 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 75 target r

> hide #5 models

> select #1

2 models selected  

> transparency #1.1 50

> select clear

> view p2

> select #1

2 models selected  

> transparency #1.1 40

> select clear

> select #8/A:1220

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select clear

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 75 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85 target r

> select clear

> save C:\Users\lilyh\Desktop\image236.png supersample 3

> turn x -90

> turn x 90

> select #1

2 models selected  

> transparency #1.1 30

> select clear

> select #1

2 models selected  

> surface style #1 solid

> transparency #1.1 30

> transparency #1.1 70

> transparency #8/A 0 target r

> select clear

No atoms selected for zoning  

> save C:\Users\lilyh\Desktop\image237.png supersample 3

> turn x -90

> save C:\Users\lilyh\Desktop\image238.png supersample 3

> show #5 models

> select add #5

4737 atoms, 4823 bonds, 585 residues, 1 model selected  

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> hide sel cartoons

> hide sel atoms

[Repeated 1 time(s)]

> show sel atoms

> hide sel atoms

[Repeated 1 time(s)]

> show #5/B: 127-148

> show #5/B: 127-148 target r

> hide sel atoms

> set transparency #5/B: 127-148 0 target r

Expected a keyword  

> transparency #5/B: 127-148 0 target r

> select clear

> select #1

2 models selected  

> select clear

> select #1

2 models selected  

> select #1

2 models selected  

> select #1

2 models selected  

> surface style #1 mesh

> select clear

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 75 target r

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 70 target r

> select #5/B: 132, 137, 142 target r

Expected a keyword  

> select #5: 132, 137, 142 target r

Expected a keyword  

> select #5/B: 132, 137, 142 target r

Expected a keyword  

> select #5/B: 132, 137, 142

30 atoms, 28 bonds, 3 residues, 1 model selected  

> show sel atoms

> style sel sphere

Changed 30 atom styles  

> style sel stick

Changed 30 atom styles  

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85 target r

> transparency #5/B: 127-148 85 target r

> save "C:/Users/lilyh/Desktop/Vac17-Myo2 Reconstructions/Annotated J1808.cxs"
> includeMaps true

——— End of log from Sun Oct 15 14:29:16 2023 ———

opened ChimeraX session  

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297 85 target r

> transparency #5/B: 127-148 85 target r

> select #8: 1222

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel atoms

> color (#!8 & sel) red

> select #1

2 models selected  

> surface style #1 mesh

> select clear

> ui tool show Contacts

> contacts resSeparation 5 intraModel false intraMol false color #ffff00

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 5

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 5 radius 0.125

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 5 radius 0.155

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 5 radius 0.155

70289 contacts  

> save "C:/Users/lilyh/Desktop/Vac17-Myo2 Reconstructions/Annotated J1808.cxs"
> includeMaps true

> select add #7

70289 pseudobonds, 1 model selected  

> select subtract #7

Nothing selected  

> select add #6

3389 atoms, 3223 bonds, 3 pseudobonds, 617 residues, 2 models selected  

> select subtract #6

Nothing selected  

> hide #!1 models

> hide #!8 models

> show #!8 models

> hide #7 models

> show #7 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!1 models

> select #1

2 models selected  

> surface style #1 mesh

> select clear

> select #5/B: 132, 137, 142

30 atoms, 28 bonds, 3 residues, 1 model selected  

> contacts sel restsrict both reveal true showDist true

Expected a keyword  

> contacts sel restsrict both reveal true showDist true

Expected a keyword  

> contacts sel restsrict both reveal true showDist t

Expected a keyword  

> contacts sel restsrict both reveal true showDist

Expected a keyword  

> contacts sel restsrict both reveal showDist

Expected a keyword  

> contacts sel restsrict both reveal showDist

Expected a keyword  

> contacts sel restrict both reveal showDist

Invalid "reveal" argument: Expected true or false (or 1 or 0)  

> contacts sel restrict both reveal true showDist

Missing "showDist" keyword's argument  

> contacts sel restrict both reveal true showDist true

No contacts  

> contacts sel restrict reveal true showDist true

Invalid "restrict" argument: Expected one of 'any', 'both', or 'cross' or an
atoms specifier  

> contacts sel restrict any reveal true showDist true

164 contacts  

> contacts sel restrict any reveal true showDist false

164 contacts  

> hide #!1 models

> show #!1 models

> hide #!1 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> contacts sel restrict cross reveal true showDist false

164 contacts  

> contacts sel restrict both reveal true showDist false

No contacts  

> contacts sel restrict cross reveal true showDist false

164 contacts  

> contacts sel restrict cross reveal true showDist false intraModel false

120 contacts  

> hide ~#5/B: 137, 132, 142

> select add #8

3004 atoms, 3056 bonds, 6 pseudobonds, 367 residues, 3 models selected  

> select subtract #8

30 atoms, 28 bonds, 3 residues, 2 models selected  

> select add #8

3004 atoms, 3056 bonds, 6 pseudobonds, 367 residues, 3 models selected  

> select subtract #8

30 atoms, 28 bonds, 3 residues, 2 models selected  

> hide #!8 models

> show #!8 models

> transparency ~#8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297, 1222

Missing or invalid "percent" argument: Expected a number  

> select #8/A: 1229, 1233, 1304, 1301, 1307, 1293, 1297, 1222

67 atoms, 59 bonds, 8 residues, 1 model selected  

> show sel atoms

[Repeated 1 time(s)]

> hide sel atoms

> show sel cartoons

> style sel stick

Changed 67 atom styles  

> style sel stick

Changed 67 atom styles  

> show sel atoms

> show #!1 models

> select #1

2 models selected  

> surface style #1 mesh

> select clear

> select #5/B:138

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #5/B:140

8 atoms, 7 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #5/B:135

11 atoms, 10 bonds, 1 residue, 1 model selected  

> show sel atoms

[Repeated 1 time(s)]

> select clear

> contacts sel restrict cross reveal true showDist false intraModel false

No atoms match given atom specifier  

> contacts sel restrict cross reveal true showDist false intraModel false

No atoms match given atom specifier  

> select #5/B: 132, 137, 142, 135, 140, 138

58 atoms, 54 bonds, 6 residues, 1 model selected  

> contacts sel restrict cross reveal true showDist false intraModel false

166 contacts  

> select #8/A:1303

12 atoms, 12 bonds, 1 residue, 1 model selected  

> transparency #8/B: 1303 target 0

Missing or invalid "percent" argument: Expected a number  

> transparency #8/B: 1303 target 0 target r

Missing or invalid "percent" argument: Expected a number  

> transparency #8/B: 1303 0 target r

> color (#!8 & sel) dark gray

> color (#!8 & sel) gray

> transparency #8/B: 1303 0

> transparency #8/A: 1303 0

> transparency #8/A: 1303 0 target r

> select clear

> select #8/A:1300

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #8/A:1300

5 atoms, 4 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select clear

> select #8/A:1311

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #8/A:1311

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select #8/A:1305

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select #8/A:1306

12 atoms, 12 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select #8/A:1308@CD1

1 atom, 1 residue, 1 model selected  

> hide sel atoms

> select #8/A:1308

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select #1

2 models selected  

> select #8/A:1230@CB

1 atom, 1 residue, 1 model selected  

> hide sel atoms

[Repeated 1 time(s)]

> show sel atoms

> hide sel atoms

> select #8/A:1230

7 atoms, 6 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select clear

> select #5/B:141

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #5/B:140

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select #8/A:1222

9 atoms, 8 bonds, 1 residue, 1 model selected  

> transparency #8: 1222 0

> transparency #8: 1222 0 target r

> color #7 yellow models

> select #5/B: 132, 137, 142, 135, 140, 138

58 atoms, 54 bonds, 6 residues, 1 model selected  

> select #5/B: 132, 137, 142, 135, 138

50 atoms, 47 bonds, 5 residues, 1 model selected  

> transparency #5: 132, 137, 142, 135, 138 0 target r

> select clear

> transparency #5: 135, 138 0 target r

> transparency #5: 135, 138 85 target r

> transparency #5: 135, 138 85

> transparency #5: 135, 138

Missing or invalid "percent" argument: Expected a number  

> transparency #5: 135, 138 90

> transparency #5: 135, 138 95

> select #5/B:138

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select clear

> transparency #5: 135, 138

Missing or invalid "percent" argument: Expected a number  

> transparency #5: 135, 138 85 target r

> transparency #5: 135, 138 85

> select #5/B:138

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel atoms

> select clear

> transparency #5: 135, 138 0 target r

> select clear

> ui tool show Contacts

> select add #7

166 pseudobonds, 1 model selected  

> ui tool show Contacts

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 5 radius 0.155

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 4 radius 0.155

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 4 radius 0.125

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 4 radius 0.105

70289 contacts  

> contacts resSeparation 5 intraModel false intraMol false color #ffff00
> dashes 4 radius 0.105 log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: False
    
    70289 contacts
                                                              atom1                                                                                                                       atom2                                                             overlap  distance
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1554 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1554 CB    3.660    0.100
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1554 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1554 CA    3.635    0.125
    1152-1574 Job 89-coot-annotated.pdb #8/A TRP 1552 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TRP 1552 CA    3.628    0.132
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1172 CG   1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1172 CG                                                                         3.617    0.143
    1152-1574 Job 89-coot-annotated.pdb #8/A TRP 1552 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TRP 1552 CB    3.611    0.149
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1553 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1553 CA                                                                         3.594    0.166
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1176 CB   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1176 CB                                                                         3.589    0.171
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1176 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1176 CG    3.587    0.173
    1152-1574 Job 89-coot-annotated.pdb #8/A ALA 1551 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ALA 1551 CB    3.581    0.179
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1172 CB   1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1172 CB                                                                         3.580    0.180
    1152-1574 Job 89-coot-annotated.pdb #8/A GLY 1177 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLY 1177 CA    3.574    0.186
    1152-1574 Job 89-coot-annotated.pdb #8/A ALA 1551 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ALA 1551 CA    3.572    0.188
    1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1556 CD                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1556 CD    3.561    0.199
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1176 CD                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1176 CD    3.561    0.199
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1173 CA   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1173 CA                                                                         3.556    0.204
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1555 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1555 CA                                                                         3.555    0.205
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1553 CB   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1553 CB                                                                         3.554    0.206
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1176 CA   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1176 CA                                                                         3.552    0.208
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1172 CA   1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1172 CA                                                                         3.552    0.208
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1173 CG   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1173 CG                                                                         3.551    0.209
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1555 CD2  1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1555 CD2                                                                        3.551    0.209
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1173 CB   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1173 CB                                                                         3.540    0.220
    1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1556 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1556 CG    3.539    0.221
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1555 CG   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1555 CG                                                                         3.538    0.222
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1559 CE   1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1559 CE                                                                         3.535    0.225
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1502 CB   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1502 CG                                                                         3.533    0.227
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1173 CD   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1173 CD                                                                         3.530    0.230
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1553 CG   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1553 CG                                                                         3.530    0.230
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1555 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1555 CB    3.528    0.232
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1553 CD2                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1553 CD2   3.521    0.239
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1500 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1500 CB    3.516    0.244
    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1360 CA                                                                        2f6h.pdb #6/X TYR 215 CD2                                                                                                    3.514    0.126
    1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1556 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1556 CB    3.505    0.255
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1168 CD                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1168 CD    3.505    0.255
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1559 CD   1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1559 CD                                                                         3.503    0.257
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1555 CD1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1555 CD1   3.501    0.259
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1168 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1168 CG    3.499    0.261
    1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1556 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1556 CA    3.499    0.261
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1553 CD1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1553 CD1   3.495    0.265
    1152-1574 Job 89-coot-annotated.pdb #8/A CYS 1394 CB                                                                        2f6h.pdb #6/X LEU 285 CG                                                                                                     3.490    0.270
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1550 CA   1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1550 CA                                                                         3.487    0.273
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1550 CB   1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1550 CB                                                                         3.486    0.274
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLY 1181 CA   1152-1574 Job 89-coot-annotated.pdb #8/A GLY 1181 CA                                                                         3.486    0.274
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1169 CA   1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1169 CA                                                                         3.485    0.275
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1183 CD                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1183 CD    3.485    0.275
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1169 CG2  1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1169 CG2                                                                        3.480    0.280
    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1175 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1175 CB    3.476    0.284
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1178 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1178 CA                                                                         3.476    0.284
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1559 CG   1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1559 CG                                                                         3.472    0.288
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1175 CA   1152-1574 Job 89-coot-annotated.pdb #8/A THR 1175 CA                                                                         3.472    0.288
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1174 CA   1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1174 CA                                                                         3.469    0.291
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1169 CG1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1169 CG1   3.465    0.295
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1169 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1169 CB    3.465    0.295
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1549 CG2  1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1549 CG2                                                                        3.464    0.296
    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1175 CG2                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1175 CG2   3.463    0.297
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1168 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1168 CB    3.460    0.300
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1183 CG   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1183 CG                                                                         3.458    0.302
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1178 CB   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1178 CB                                                                         3.453    0.307
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1180 CD                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1180 CD    3.453    0.307
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1168 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1168 CA    3.450    0.310
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1180 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1180 CB    3.449    0.311
    1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1550 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1550 CG    3.447    0.313
    1152-1574 Job 89-coot-annotated.pdb #8/A ASN 1171 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASN 1171 CA    3.446    0.314
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1559 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1559 CB    3.441    0.319
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1180 CE                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1180 CE    3.437    0.323
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1550 CD   1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1550 CD                                                                         3.436    0.324
    1152-1574 Job 89-coot-annotated.pdb #8/A ASN 1171 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASN 1171 CB    3.434    0.326
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1170 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1170 CA                                                                         3.434    0.326
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1557 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1557 CB    3.434    0.326
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1169 CD1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1169 CD1   3.433    0.327
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1180 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1180 CG    3.432    0.328
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1183 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1183 CB    3.430    0.330
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1180 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1180 CA                                                                         3.429    0.331
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1174 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1174 CB    3.428    0.332
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1549 CB   1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1549 CB                                                                         3.427    0.333
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1557 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1557 CA    3.427    0.333
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1558 CB   1152-1574 Job 89-coot-annotated.pdb #8/A THR 1558 CB                                                                         3.426    0.334
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1178 CD1  1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1178 CD1                                                                        3.424    0.336
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1312 CB   2f6h.pdb #6/X TYR 155 CD1                                                                                                    3.421    0.219
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1182 CA   1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1182 CA                                                                         3.416    0.344
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1174 CG1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1174 CG1   3.415    0.345
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1178 CG   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1178 CG                                                                         3.415    0.345
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1549 CA   1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1549 CA                                                                         3.415    0.345
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1174 CD1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1174 CD1   3.410    0.350
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1498 CB   1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1498 CG2                                                                        3.409    0.351
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1559 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1559 CA                                                                         3.407    0.353
    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1558 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1558 CA    3.406    0.354
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1179 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1179 CA    3.400    0.360
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1549 CD1  1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1549 CD1                                                                        3.398    0.362
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1174 CG2                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1174 CG2   3.397    0.363
    1152-1574 Job 89-coot-annotated.pdb #8/A VAL 1325 CA                                                                        2f6h.pdb #6/X LEU 269 CA                                                                                                     3.396    0.364
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1558 CG2  1152-1574 Job 89-coot-annotated.pdb #8/A THR 1558 CG2                                                                        3.396    0.364
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1183 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1183 CA    3.395    0.365
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1204 CD1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1204 CD1   3.395    0.365
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1549 CG1  1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1549 CG1                                                                        3.392    0.368
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1178 CD2  1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1178 CD2                                                                        3.389    0.371
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1280 CG2  1152-1574 Job 89-coot-annotated.pdb #8/A THR 1280 CB                                                                         3.389    0.371
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1170 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1170 CB    3.388    0.372
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1179 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1179 CB    3.384    0.376
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1170 CD1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1170 CD1   3.383    0.377
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASP 1497 CG   1152-1574 Job 89-coot-annotated.pdb #8/A ASP 1497 CB                                                                         3.383    0.377
    1152-1574 Job 89-coot-annotated.pdb #8/A MET 1355 CE                                                                        2f6h.pdb #6/X TRP 272 CA                                                                                                     3.382    0.378
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1420 CG   2f6h.pdb #6/X CYS 273 C                                                                                                      3.380    0.110
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1182 CB   1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1182 CB                                                                         3.375    0.385
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1179 CG   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1179 CG                                                                         3.370    0.390
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1170 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1170 CG    3.369    0.391

[Log of most of these 70K contacts deleted]

    1152-1574 Job 89-coot-annotated.pdb #8/A TRP 1309 CE3                                                                       2f6h.pdb #6/X VAL 227 CG2                                                                                                    0.391    3.249
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1327 O    2f6h.pdb #6/X MET 204 CE                                                                                                     0.391    2.909
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASN 1403 O    1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1404 N                                                                          0.391    2.269
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1240 CG                                                                        2f6h.pdb #6/X ILE 154 CG1                                                                                                    0.391    3.369
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1358 O                                                                         output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1358 CG2   0.391    2.909
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1259 N    1152-1574 Job 89-coot-annotated.pdb #8/A TYR 1259 C                                                                          0.391    2.859
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/B SER 128 C     2f6h.pdb #6/X THR 376 C                                                                                                      0.391    2.829
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASN 1307 C    2f6h.pdb #6/X ASP 381 CB                                                                                                     0.391    3.099
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PRO 1488 N    1152-1574 Job 89-coot-annotated.pdb #8/A PRO 1488 C                                                                          0.391    2.859
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASP 1357 O    1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1361 N                                                                          0.391    2.269
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C VAL 1236 C    1152-1574 Job 89-coot-annotated.pdb #8/A VAL 1236 CB                                                                         0.391    3.099
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1318 CG   2f6h.pdb #6/X LEU 235 CB                                                                                                     0.391    3.369
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1521 CG1                                                                       output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1521 C     0.391    3.099
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1401 CB   2f6h.pdb #6/X LEU 262 CG                                                                                                     0.391    3.369
    1152-1574 Job 89-coot-annotated.pdb #8/A TYR 1259 OH                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1295 CE    0.391    2.949
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1379 O    1152-1574 Job 89-coot-annotated.pdb #8/A HIS 1380 C                                                                          0.391    2.639
    1152-1574 Job 89-coot-annotated.pdb #8/A ARG 1203 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ARG 1203 O     0.391    2.909
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1257 CG   1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1257 C                                                                          0.391    3.099
    2f6h.pdb #6/X ASP 280 CA                                                                                                    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASN 1388 CA    0.391    3.369
    1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1440 N                                                                         2f6h.pdb #6/X THR 282 CB                                                                                                     0.391    3.129
    1152-1574 Job 89-coot-annotated.pdb #8/A TYR 1353 CD1                                                                       2f6h.pdb #6/X PHE 211 CA                                                                                                     0.391    3.249
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1522 CE2  2f6h.pdb #6/X ILE 372 CB                                                                                                     0.391    3.249
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1412 CA   1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1411 O                                                                          0.391    2.909
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1494 CD2  2f6h.pdb #6/X ASP 304 N                                                                                                      0.391    3.009
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1206 C    2f6h.pdb #6/X GLU 121 CD                                                                                                     0.391    3.099
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1395 O    2f6h.pdb #6/X GLN 286 C                                                                                                      0.391    2.639
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C VAL 1263 CG2  1152-1574 Job 89-coot-annotated.pdb #8/A TYR 1259 CD1                                                                        0.391    3.249
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1471 CA   2f6h.pdb #6/X ILE 311 CB                                                                                                     0.390    3.370
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ARG 1196 CD   1152-1574 Job 89-coot-annotated.pdb #8/A ARG 1196 NH1                                                                        0.390    3.130
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1194 C    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1193 O                                                                          0.390    2.640
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1475 CB   2f6h.pdb #6/X LEU 294 O                                                                                                      0.390    2.910
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ARG 1493 CB   2f6h.pdb #6/X THR 301 CA                                                                                                     0.390    3.370
    1152-1574 Job 89-coot-annotated.pdb #8/A ASN 1416 C                                                                         2f6h.pdb #6/X GLU 271 O                                                                                                      0.390    2.640
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1474 O                                                                         2f6h.pdb #6/X LEU 294 O                                                                                                      0.390    2.450
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1298 CE2  1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1298 CB                                                                         0.390    3.250
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1452 CA   1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1453 CA                                                                         0.390    3.370
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1366 CB   1152-1574 Job 89-coot-annotated.pdb #8/A ASN 1363 O                                                                          0.390    2.910
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1239 O    2f6h.pdb #6/X ILE 154 CG1                                                                                                    0.390    2.910
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1180 CE                                                                        2f6h.pdb #6/X LEU 74 CG                                                                                                      0.390    3.370
    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1384 C                                                                         output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1384 CG2   0.390    3.100
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1301 CB                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASP 1297 O     0.390    2.910
    1152-1574 Job 89-coot-annotated.pdb #8/A TYR 1389 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1389 CZ    0.390    2.830
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ALA 1265 C    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1266 CB                                                                         0.390    3.100
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1206 O    2f6h.pdb #6/X SER 117 O                                                                                                      0.390    2.450
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1470 C    2f6h.pdb #6/X CYS 312 N                                                                                                      0.390    2.860
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1475 CD1  2f6h.pdb #6/X LEU 308 CG                                                                                                     0.390    3.370
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1328 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1328 OG    0.390    2.950
    1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1227 OE1                                                                       2f6h.pdb #6/X LEU 139 C                                                                                                      0.390    2.640
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1467 N    2f6h.pdb #6/X TYR 313 CD1                                                                                                    0.390    3.010
    2f6h.pdb #6/X VAL 98 C                                                                                                      1152-1574 Job 89-coot-annotated.pdb #8/A ASP 1243 CA                                                                         0.390    3.100
    1152-1574 Job 89-coot-annotated.pdb #8/A VAL 1236 O                                                                         2f6h.pdb #6/X SER 151 C                                                                                                      0.390    2.640
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1487 CD1  1152-1574 Job 89-coot-annotated.pdb #8/A ILE 1487 CB                                                                         0.390    3.370
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1219 CB   1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1219 O                                                                          0.390    2.910
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1353 O    2f6h.pdb #6/X LEU 208 CD2                                                                                                    0.390    2.910
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1476 N                                                                         2f6h.pdb #6/X LYS 299 CE                                                                                                     0.390    3.130
    1152-1574 Job 89-coot-annotated.pdb #8/A LYS 1311 CD                                                                        2f6h.pdb #6/X THR 380 O                                                                                                      0.390    2.910
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1209 O                                                                         output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C SER 1210 C     0.390    2.640
    2f6h.pdb #6/X GLN 286 CB                                                                                                    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C HIS 1438 CD2   0.390    3.250
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1386 CB                                                                        2f6h.pdb #6/X HIS 229 ND1                                                                                                    0.390    3.130
    1152-1574 Job 89-coot-annotated.pdb #8/A VAL 1236 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C VAL 1236 O     0.390    2.910
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1240 N    2f6h.pdb #6/X TRP 100 CB                                                                                                     0.389    3.131
    1152-1574 Job 89-coot-annotated.pdb #8/A ASN 1388 OD1                                                                       2f6h.pdb #6/X ASP 280 CB                                                                                                     0.389    2.911
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1173 OE2                                                                       2f6h.pdb #6/X GLU 60 CA                                                                                                      0.389    2.911
    1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1362 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1362 O     0.389    2.911
    2f6h.pdb #6/X GLU 270 CG                                                                                                    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1439 CG    0.389    3.371
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1179 CA   2f6h.pdb #6/X VAL 111 CG2                                                                                                    0.389    3.371
    2f6h.pdb #6/X ARG 309 CD                                                                                                    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C VAL 1499 C     0.389    3.101
    1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1227 O                                                                         2f6h.pdb #6/X LYS 144 N                                                                                                      0.389    2.271
    1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1224 N                                                                         2f6h.pdb #6/X TYR 136 O                                                                                                      0.389    2.271
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ASN 1396 CA   2f6h.pdb #6/X HIS 287 CA                                                                                                     0.389    3.371
    1152-1574 Job 89-coot-annotated.pdb #8/A ASN 1171 CB                                                                        2f6h.pdb #6/X TRP 62 NE1                                                                                                     0.389    3.131
    1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1314 O                                                                         output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1318 N     0.389    2.271
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1450 C    1152-1574 Job 89-coot-annotated.pdb #8/A ARG 1449 C                                                                          0.389    2.831
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C THR 1531 C    1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1530 O                                                                          0.389    2.641
    2f6h.pdb #6/X GLU 121 N                                                                                                     1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1211 N                                                                          0.389    2.891
    2f6h.pdb #6/X GLU 142 CA                                                                                                    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1230 CG2                                                                        0.389    3.371
    1152-1574 Job 89-coot-annotated.pdb #8/A VAL 1228 CB                                                                        2f6h.pdb #6/X LEU 115 CA                                                                                                     0.389    3.371
    1152-1574 Job 89-coot-annotated.pdb #8/A GLU 1168 O                                                                         2f6h.pdb #6/X THR 67 C                                                                                                       0.389    2.641
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1245 O    2f6h.pdb #6/X GLU 224 N                                                                                                      0.389    2.271
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1505 C    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1505 CA                                                                         0.389    3.101
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLU 1286 O    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1289 CB                                                                         0.389    2.911
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C VAL 1325 CG1  2f6h.pdb #6/X GLU 270 C                                                                                                      0.389    3.101
    2f6h.pdb #6/X SER 255 N                                                                                                     1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1479 CD                                                                         0.389    2.861
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C VAL 1495 CA   1152-1574 Job 89-coot-annotated.pdb #8/A ALA 1496 N                                                                          0.389    3.131
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C ILE 1393 O    1152-1574 Job 89-coot-annotated.pdb #8/A CYS 1394 N                                                                          0.389    2.271
    1152-1574 Job 89-coot-annotated.pdb #8/A SER 1223 N                                                                         output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C PHE 1224 N     0.389    2.891
    1152-1574 Job 89-coot-annotated.pdb #8/A GLN 1472 CG                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C GLN 1472 OE1   0.389    2.911
    1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1160 O                                                                         output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1161 C     0.389    2.641
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1398 CD1  1152-1574 Job 89-coot-annotated.pdb #8/A LEU 1439 CD2                                                                        0.389    3.371
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TYR 1287 O    1152-1574 Job 89-coot-annotated.pdb #8/A VAL 1291 N                                                                          0.389    2.271
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/B GLN 143 OE1   2f6h.pdb #6/X SER 138 OG                                                                                                     0.389    2.091
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C TRP 1552 CE3  1152-1574 Job 89-coot-annotated.pdb #8/A TRP 1552 CB                                                                         0.389    3.251
    1152-1574 Job 89-coot-annotated.pdb #8/A THR 1467 CA                                                                        output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LEU 1466 C     0.389    3.101
    2f6h.pdb #6/X LEU 285 C                                                                                                     1152-1574 Job 89-coot-annotated.pdb #8/A PHE 1395 CG                                                                         0.389    2.831
    output_dir_COSMIC2JOBCOLABFOLD4BBB2580C9CA44C6B52A66BA6975777F_1c490_unrelaxed_rank_1_model_3-coot-0.pdb #5/C LYS 1312 C    2f6h.pdb #6/X TYR 155 CE2                                               




OpenGL version: 3.3.14756 Core Profile Forward-Compatible Context 20.40.68.03 27.20.14068.3000
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: Microsoft Corporation
Model: Surface Laptop 4
OS: Microsoft Windows 11 Home (Build 22621)
Memory: 8,002,093,056
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 Microsoft Surface (R) Edition
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.21.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.6.0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0

Change History (2)

comment:1 by Eric Pettersen, 21 months ago

Cc: Tom Goddard added
Component: Unassigned → Structure Analysis
Description: modified (diff)
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Logged a lot of contacts

comment:2 by Eric Pettersen, 21 months ago

Resolution: → not a bug
Status: accepted → closed

No actual error reported

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