Opened 22 months ago

Closed 22 months ago

#14421 closed defect (nonchimerax)

trying to start unknown tool: wiggle

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc: Greg Couch, Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.4.0-169-generic-x86_64-with-glibc2.31
ChimeraX Version: 1.7rc202311180239 (2023-11-18 02:39:13 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.7rc202311180239 (2023-11-18)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> devel build /home/yanyan/wiggle/wiggle/

running build  
running build_py  
running bdist_wheel  
installing to build/bdist.linux-x86_64/wheel  
running install  
running install_lib  
creating build/bdist.linux-x86_64/wheel  
creating build/bdist.linux-x86_64/wheel/chimerax  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle2.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/dijkstra_modified.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/low_pass.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniSPARC.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/embedding.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniDRGN.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/path_inference_dijkstra.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/volumiser.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/clustering.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/wiggle_packager.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
copying build/lib/chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
running install_egg_info  
running egg_info  
writing wiggle.egg-info/PKG-INFO  
writing dependency_links to wiggle.egg-info/dependency_links.txt  
writing requirements to wiggle.egg-info/requires.txt  
writing top-level names to wiggle.egg-info/top_level.txt  
reading manifest file 'wiggle.egg-info/SOURCES.txt'  
adding license file 'LICENSE'  
writing manifest file 'wiggle.egg-info/SOURCES.txt'  
Copying wiggle.egg-info to
build/bdist.linux-x86_64/wheel/wiggle-0.2.2-py3.11.egg-info  
running install_scripts  
creating build/bdist.linux-x86_64/wheel/wiggle-0.2.2.dist-info/WHEEL  
creating 'dist/wiggle-0.2.2-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it  
adding 'chimerax/wiggle/__init__.py'  
adding 'chimerax/wiggle/tool.py'  
adding 'chimerax/wiggle/wiggle.py'  
adding 'chimerax/wiggle/deps/clustering.py'  
adding 'chimerax/wiggle/deps/data_handler.py'  
adding 'chimerax/wiggle/deps/dijkstra_modified.py'  
adding 'chimerax/wiggle/deps/embedding.py'  
adding 'chimerax/wiggle/deps/low_pass.py'  
adding 'chimerax/wiggle/deps/miniDRGN.py'  
adding 'chimerax/wiggle/deps/miniSPARC.py'  
adding 'chimerax/wiggle/deps/mrc.py'  
adding 'chimerax/wiggle/deps/path_inference_dijkstra.py'  
adding 'chimerax/wiggle/deps/ui_compiled.py'  
adding 'chimerax/wiggle/deps/volumiser.py'  
adding 'chimerax/wiggle/deps/wiggle_packager.py'  
adding 'chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'  
adding 'chimerax/wiggle/resources/Wiggle.PNG'  
adding 'chimerax/wiggle/resources/Wiggle2.PNG'  
adding 'wiggle-0.2.2.dist-info/LICENSE'  
adding 'wiggle-0.2.2.dist-info/METADATA'  
adding 'wiggle-0.2.2.dist-info/WHEEL'  
adding 'wiggle-0.2.2.dist-info/top_level.txt'  
adding 'wiggle-0.2.2.dist-info/RECORD'  
removing build/bdist.linux-x86_64/wheel  
Distribution is in /home/yanyan/wiggle/wiggle/dist/wiggle-0.2.2-py3-none-
any.whl  
  

> devel install /home/yanyan/wiggle/wiggle/

running build  
running build_py  
running bdist_wheel  
installing to build/bdist.linux-x86_64/wheel  
running install  
running install_lib  
creating build/bdist.linux-x86_64/wheel  
creating build/bdist.linux-x86_64/wheel/chimerax  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle2.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/dijkstra_modified.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/low_pass.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniSPARC.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/embedding.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniDRGN.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/path_inference_dijkstra.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/volumiser.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/clustering.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/wiggle_packager.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
copying build/lib/chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
running install_egg_info  
running egg_info  
writing wiggle.egg-info/PKG-INFO  
writing dependency_links to wiggle.egg-info/dependency_links.txt  
writing requirements to wiggle.egg-info/requires.txt  
writing top-level names to wiggle.egg-info/top_level.txt  
reading manifest file 'wiggle.egg-info/SOURCES.txt'  
adding license file 'LICENSE'  
writing manifest file 'wiggle.egg-info/SOURCES.txt'  
Copying wiggle.egg-info to
build/bdist.linux-x86_64/wheel/wiggle-0.2.2-py3.11.egg-info  
running install_scripts  
creating build/bdist.linux-x86_64/wheel/wiggle-0.2.2.dist-info/WHEEL  
creating 'dist/wiggle-0.2.2-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it  
adding 'chimerax/wiggle/__init__.py'  
adding 'chimerax/wiggle/tool.py'  
adding 'chimerax/wiggle/wiggle.py'  
adding 'chimerax/wiggle/deps/clustering.py'  
adding 'chimerax/wiggle/deps/data_handler.py'  
adding 'chimerax/wiggle/deps/dijkstra_modified.py'  
adding 'chimerax/wiggle/deps/embedding.py'  
adding 'chimerax/wiggle/deps/low_pass.py'  
adding 'chimerax/wiggle/deps/miniDRGN.py'  
adding 'chimerax/wiggle/deps/miniSPARC.py'  
adding 'chimerax/wiggle/deps/mrc.py'  
adding 'chimerax/wiggle/deps/path_inference_dijkstra.py'  
adding 'chimerax/wiggle/deps/ui_compiled.py'  
adding 'chimerax/wiggle/deps/volumiser.py'  
adding 'chimerax/wiggle/deps/wiggle_packager.py'  
adding 'chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'  
adding 'chimerax/wiggle/resources/Wiggle.PNG'  
adding 'chimerax/wiggle/resources/Wiggle2.PNG'  
adding 'wiggle-0.2.2.dist-info/LICENSE'  
adding 'wiggle-0.2.2.dist-info/METADATA'  
adding 'wiggle-0.2.2.dist-info/WHEEL'  
adding 'wiggle-0.2.2.dist-info/top_level.txt'  
adding 'wiggle-0.2.2.dist-info/RECORD'  
removing build/bdist.linux-x86_64/wheel  
Distribution is in /home/yanyan/wiggle/wiggle/dist/wiggle-0.2.2-py3-none-
any.whl  
[toolshed install](help:user/commands/toolshed.html#install)  
/home/yanyan/wiggle/wiggle/dist/wiggle-0.2.2-py3-none-any.whl reinstall true  
  
[toolshed install /home/yanyan/wiggle/wiggle/dist/wiggle-0.2.2-py3-none-  
any.whl reinstall true](cxcmd:toolshed install  
/home/yanyan/wiggle/wiggle/dist/wiggle-0.2.2-py3-none-any.whl reinstall true)  
  
Installed wiggle (0.2.2)  
  

> ui tool show wiggle

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 571, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1341, in start_tool  
return cls._get_func(api, "start_tool")(session, bi, ti)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/yanyan/.local/share/ChimeraX/1.7/lib/python3.11/site-
packages/chimerax/wiggle/__init__.py", line 31, in start_tool  
raise ValueError("trying to start unknown tool: %s" % ti.name)  
ValueError: trying to start unknown tool: wiggle  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 1721, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/cmd.py",
line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool wiggle in
bundle wiggle:  
trying to start unknown tool: wiggle  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool wiggle in
bundle wiggle:  
trying to start unknown tool: wiggle  
  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 470.223.02
OpenGL renderer: NVIDIA GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: ASUS
Model: All Series
OS: Ubuntu 20.04 Focal Fossa
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz
Cache Size: 20480 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           62Gi       4.4Gi       489Mi       1.2Gi        57Gi        56Gi
	Swap:          47Gi       1.4Gi        46Gi

Graphics:
	05:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104 [GeForce GTX 1080] [10de:1b80] (rev a1)	
	Subsystem: PNY GP104 [GeForce GTX 1080] [196e:119e]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.13.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.12
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.22.2
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7rc202311180239
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.7rc1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.1
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.13
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.3
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.2
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.44.3
    funcparserlib: 2.0.0a0
    geomdl: 5.3.1
    glfw: 2.6.3
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.5.0
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.7
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    pandas: 2.1.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 10.0.1
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.0.0
    prompt-toolkit: 3.0.41
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.1
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    starfile: 0.5.1
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.3
    traitlets: 5.9.0
    typing-extensions: 4.8.0
    tzdata: 2023.3
    urllib3: 2.1.0
    wcwidth: 0.2.10
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9
    wiggle: 0.2.2

Change History (2)

comment:1 by Eric Pettersen, 22 months ago

Cc: Greg Couch Tom Goddard added
Component: Unassigned → Third Party
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → trying to start unknown tool: wiggle

comment:2 by Eric Pettersen, 22 months ago

Resolution: → nonchimerax
Status: accepted → closed

Seems like a coding error in the bundle

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