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Opened 22 months ago
Closed 22 months ago
#14495 closed defect (duplicate)
MatchMaker: 'NoneType' object has no attribute 'setChecked'
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-6.5.0-14-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P7_J710_006_volume_map_sharp.mrc
Opened cryosparc_P7_J710_006_volume_map_sharp.mrc as #1, grid size
256,256,256, pixel 1.48, shown at level 0.0524, step 1, values float32
> open /home/pinkie/Documents/Charlotte/2024_01_28/fullmodel-v4.pdb
Chain information for fullmodel-v4.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
R | No description available
> volume #1 level 0.204
> show cartoons
> hide atoms
> volume #1 level 0.1434
> transparency 50
> surface dust #1 size 14.8
> select #2/R
1432 atoms, 1452 bonds, 92 residues, 1 model selected
> isolde start
> set selectionWidth 4
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
Chain information for fullmodel-v4.pdb
---
Chain | Description
2.2/A | No description available
2.2/B | No description available
2.2/C | No description available
2.2/D | No description available
2.2/E | No description available
2.2/R | No description available
> select clear
> clipper associate #1 toModel #2
Opened cryosparc_P7_J710_006_volume_map_sharp.mrc as #2.1.1.1, grid size
256,256,256, pixel 1.48, shown at step 1, values float32
> volume #2.1.1.1 level 0.0992
> select #2/R
1432 atoms, 1452 bonds, 92 residues, 1 model selected
> select clear
> select #2/R:38-108
1106 atoms, 1122 bonds, 71 residues, 1 model selected
> isolde sim start sel
ISOLDE: started sim
> isolde sim pause
> isolde sim resume
> isolde sim pause
> isolde sim stop
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
standards.
ISOLDE: stopped sim
> select clear
> hide #!2.1 models
> show #!2.1 models
> open
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P7_J710_006_volume_map_sharp.mrc
Opened cryosparc_P7_J710_006_volume_map_sharp.mrc as #1, grid size
256,256,256, pixel 1.48, shown at level 0.0524, step 1, values float32
> volume #1 level 0.1585
> save /home/pinkie/Documents/Charlotte/2024_01_28/fullmodel-v5.pdb
> open /home/pinkie/Documents/Charlotte/2024_01_28/fullmodel-v4.pdb
Chain information for fullmodel-v4.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
R | No description available
> open /home/pinkie/Documents/Charlotte/2024_01_28/fullmodel-v5.pdb
Chain information for fullmodel-v5.pdb #4
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
R | No description available
> hide #!2 models
> hide #!2.1 models
> hide #!2.2 models
> hide #2.3 models
> hide #3-4 atoms
> show #3-4 cartoons
> transparency #1.1 50
> hide #3 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> hide #4 models
> show #4 models
> open 5t35
5t35 title:
The PROTAC MZ1 in complex with the second bromodomain of Brd4 and
pVHL:ElonginC:ElonginB [more info...]
Chain information for 5t35 #5
---
Chain | Description | UniProt
A E | Bromodomain-containing protein 4 | BRD4_HUMAN
B F | Transcription elongation factor B polypeptide 2 | ELOB_HUMAN
C G | Transcription elongation factor B polypeptide 1 | ELOC_HUMAN
D H | Von Hippel-Lindau disease tumor suppressor | VHL_HUMAN
Non-standard residues in 5t35 #5
---
759 \u2014
(2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[2-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-
butanoyl]-~{N}-[[4-(4-methyl-2,3-dihydro-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-
pyrrolidine-2-carboxamide
5t35 mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
> select #5/E
910 atoms, 918 bonds, 126 residues, 1 model selected
> delete sel
> select #5/G
693 atoms, 703 bonds, 1 pseudobond, 92 residues, 2 models selected
> delete sel
> select #5/F
811 atoms, 826 bonds, 105 residues, 1 model selected
> delete sel
> select #5/H
1265 atoms, 1294 bonds, 156 residues, 1 model selected
> delete sel
> ui tool show Matchmaker
> matchmaker #!5 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain B (#4) with 5t35, chain D (#5), sequence
alignment score = 792.2
RMSD between 149 pruned atom pairs is 0.891 angstroms; (across all 149 pairs:
0.891)
> matchmaker #!5 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain B (#4) with 5t35, chain D (#5), sequence
alignment score = 792.2
RMSD between 149 pruned atom pairs is 0.891 angstroms; (across all 149 pairs:
0.891)
> hide #4#!5 atoms
> select ::name="759"
69 atoms, 75 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel yellow
> color sel byhetero
> select clear
> select #4/A
1835 atoms, 1858 bonds, 114 residues, 1 model selected
> color sel #5b42cdff
> select #4/B
2615 atoms, 2648 bonds, 160 residues, 1 model selected
> color sel #bfbfbfff
> color sel #fafafaff
[Repeated 1 time(s)]
> color sel forest green
> select #4/C
1647 atoms, 1663 bonds, 104 residues, 1 model selected
> color sel #bdbf40ff
> color sel #bdbf3aff
> color sel #ccce3fff
[Repeated 3 time(s)]
> select #4/D
1522 atoms, 1539 bonds, 97 residues, 1 model selected
> color sel #54bf40ff
> color sel #9abf93ff
> color sel #b0daa8ff
[Repeated 3 time(s)]
> select #4/E
10756 atoms, 10867 bonds, 658 residues, 1 model selected
> color sel #40a8bfff
> color sel #4daabfff
> color sel #4293a5ff
[Repeated 3 time(s)]
> select #4/R
1432 atoms, 1452 bonds, 92 residues, 1 model selected
> color sel #5ebf40ff
> color sel #5abf3aff
> color sel #60cb3eff
[Repeated 3 time(s)]
> select clear
> set bgColor white
> set bgColor #ffffff00
> lighting soft
> show #!1 models
> hide #!1 models
> save /home/pinkie/Documents/Charlotte/2024_01_28/view-back.png width 1269
> height 803 supersample 3 transparentBackground true
> graphics silhouettes true
> save /home/pinkie/Documents/Charlotte/2024_01_28/view-back.png width 1269
> height 803 supersample 3
> save /home/pinkie/Documents/Charlotte/2024_01_28/view-back.png width 1269
> height 803 supersample 3 transparentBackground true
> open 5n4w
5n4w title:
Crystal structure of the Cul2-Rbx1-EloBC-VHL ubiquitin ligase complex [more
info...]
Chain information for 5n4w #6
---
Chain | Description | UniProt
A | Cullin-2 | CUL2_HUMAN
B | Elongin-B | ELOB_HUMAN
C | Elongin-C | ELOC_HUMAN
R | E3 ubiquitin-protein ligase RBX1 | RBX1_HUMAN
V | Von Hippel-Lindau disease tumor suppressor | VHL_HUMAN
Non-standard residues in 5n4w #6
---
ZN \u2014 zinc ion
> ui tool show Matchmaker
> matchmaker #!6 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain E (#4) with 5n4w, chain A (#6), sequence
alignment score = 3288.4
RMSD between 377 pruned atom pairs is 1.063 angstroms; (across all 587 pairs:
3.224)
> matchmaker #!6 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain E (#4) with 5n4w, chain A (#6), sequence
alignment score = 3288.4
RMSD between 377 pruned atom pairs is 1.063 angstroms; (across all 587 pairs:
3.224)
> select add #6
7719 atoms, 7841 bonds, 29 pseudobonds, 970 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> select clear
> hide #!6 models
> show #3 models
> hide #3 models
> show #3 models
> close #3
> close #2
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> save /home/pinkie/Documents/Charlotte/2024_01_28/2024_01_28__npn-
> crosslinked-structure__final.cxs includeMaps true
> open
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P9_J635_008_volume_map.mrc
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P9_J635_008_volume_map_sharp.mrc
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P9_J647_006_volume_map_sharp.mrc
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P9_J659_007_volume_map.mrc
Opened cryosparc_P9_J635_008_volume_map.mrc as #2.1, grid size 480,480,480,
pixel 0.825, shown at level 0.00758, step 2, values float32
Opened cryosparc_P9_J635_008_volume_map_sharp.mrc as #2.2, grid size
480,480,480, pixel 0.825, shown at level 0.0194, step 2, values float32
Opened cryosparc_P9_J647_006_volume_map_sharp.mrc as #2.3, grid size
480,480,480, pixel 0.825, shown at level 0.0203, step 2, values float32
Opened cryosparc_P9_J659_007_volume_map.mrc as #2.4, grid size 480,480,480,
pixel 0.825, shown at level 0.00707, step 2, values float32
> volume #2.4 level 0.04195
> volume #2.3 level 0.07573
> volume #2.2 level 0.06618
> volume #2.1 level 0.03781
> surface dust #2.1 size 8.25
> surface dust #2.2 size 8.25
> surface dust #2.3 size 8.25
> surface dust #2.4 size 8.25
> volume flip #2.2
Opened cryosparc_P9_J635_008_volume_map_sharp.mrc z flip as #3, grid size
480,480,480, pixel 0.825, shown at step 1, values float32
> close #2.2
> select add #2.3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2.3,0.98461,-0.13581,0.11,9.4722,-0.13019,-0.98986,-0.056778,424.6,0.1166,0.041583,-0.99231,332.63
> volume flip #2.3
Opened cryosparc_P9_J647_006_volume_map_sharp.mrc z flip as #7, grid size
480,480,480, pixel 0.825, shown at step 1, values float32
> close #2.3
> select add #7
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.94093,0.053579,0.33434,-66.51,-0.17685,0.91978,0.35032,-21.349,-0.28875,-0.38875,0.87493,94.987
> view matrix models
> #7,0.9958,-0.06531,0.064213,3.5056,-0.016537,-0.81777,-0.5753,480.25,0.090084,0.57182,-0.81542,197.79
> view matrix models
> #7,-0.94582,-0.18918,-0.2639,470.69,0.14941,-0.97515,0.16355,320.99,-0.28828,0.11526,0.95058,-18.388
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.94582,-0.18918,-0.2639,476.46,0.14941,-0.97515,0.16355,320.85,-0.28828,0.11526,0.95058,43.172
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.94582,-0.18918,-0.2639,476.75,0.14941,-0.97515,0.16355,319.58,-0.28828,0.11526,0.95058,47.965
> fitmap #3 inMap #1
Fit map cryosparc_P9_J635_008_volume_map_sharp.mrc z flip in map
cryosparc_P7_J710_006_volume_map_sharp.mrc using 260097 points
correlation = 0.7239, correlation about mean = 0.415, overlap = 7246
steps = 108, shift = 10.4, angle = 7.23 degrees
Position of cryosparc_P9_J635_008_volume_map_sharp.mrc z flip (#3) relative to
cryosparc_P7_J710_006_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.99741254 0.03385855 0.06341789 -25.04544197
-0.04024254 0.99394367 0.10225709 -19.05719275
-0.05957154 -0.10454460 0.99273444 35.75883607
Axis -0.82141607 0.48851388 -0.29432945
Axis point 0.00000000 329.56848775 209.41103196
Rotation angle (degrees) 7.23164693
Shift along axis 0.73814676
> fitmap #7 inMap #1
Fit map cryosparc_P9_J647_006_volume_map_sharp.mrc z flip in map
cryosparc_P7_J710_006_volume_map_sharp.mrc using 215940 points
correlation = 0.7306, correlation about mean = 0.3854, overlap = 6936
steps = 208, shift = 9.46, angle = 21.8 degrees
Position of cryosparc_P9_J647_006_volume_map_sharp.mrc z flip (#7) relative to
cryosparc_P7_J710_006_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99893793 -0.00322217 0.04596451 381.28217401
0.00554917 -0.99870419 0.05058868 376.53393934
0.04574195 0.05079001 0.99766132 -20.33401849
Axis 0.02293995 0.02535860 0.99941518
Axis point 190.46107391 188.94352871 0.00000000
Rotation angle (degrees) 179.74857166
Shift along axis -2.02715908
> hide #!5 models
> hide #4 models
> show #4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!3 models
> select clear
> surface dust #3 size 8.25
> surface dust #7 size 8.25
> hide #!3 models
> show #!3 models
> volume #7 level 0.07801
> volume #3 level 0.05626
> select clear
> transparency #3.1 50
> volume #!3 style surface
[Repeated 1 time(s)]
> open 6ttu
6ttu title:
Ubiquitin Ligation to substrate by a cullin-RING E3 ligase at 3.7A resolution:
NEDD8-CUL1-RBX1 N98R-SKP1-monomeric b-TRCP1dD-IkBa-UB~UBE2D2 [more info...]
Chain information for 6ttu #8
---
Chain | Description | UniProt
C | Cullin-1 | CUL1_HUMAN
D | Ubiquitin-conjugating enzyme E2 D2 | UB2D2_HUMAN
I | CYS-LYS-LYS-ALA-ARG-HIS-ASP-SEP-GLY |
N | NEDD8 | NEDD8_HUMAN
R | E3 ubiquitin-protein ligase RBX1 | RBX1_HUMAN
S | S-phase kinase-associated protein 1 | SKP1_HUMAN
T | F-box/WD repeat-containing protein 1A | FBW1A_HUMAN
U | Polyubiquitin-C | UBC_HUMAN
Non-standard residues in 6ttu #8
---
ZN \u2014 zinc ion
> select add #8
12746 atoms, 12974 bonds, 25 pseudobonds, 1607 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> select clear
> select #8/I
58 atoms, 57 bonds, 1 pseudobond, 9 residues, 2 models selected
> delete sel
> select #8/T
3085 atoms, 3146 bonds, 2 pseudobonds, 394 residues, 2 models selected
> delete sel
> select #8/S
891 atoms, 903 bonds, 3 pseudobonds, 123 residues, 2 models selected
> delete sel
> ui tool show Matchmaker
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
> hide #!8 models
> hide #!3 models
> show #!8 models
> matchmaker #8/C to #4/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain E (#4) with 6ttu, chain C (#8), sequence
alignment score = 1628.1
RMSD between 309 pruned atom pairs is 1.282 angstroms; (across all 619 pairs:
4.270)
> matchmaker #8/C to #4/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain E (#4) with 6ttu, chain C (#8), sequence
alignment score = 1628.1
RMSD between 309 pruned atom pairs is 1.282 angstroms; (across all 619 pairs:
4.270)
> select #8/C:15-354
2540 atoms, 2582 bonds, 3 pseudobonds, 305 residues, 2 models selected
> delete sel
> select #8/C:703-776
582 atoms, 587 bonds, 1 pseudobond, 70 residues, 2 models selected
> delete sel
> ui tool show Matchmaker
> matchmaker #8/C to #4/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain E (#4) with 6ttu, chain C (#8), sequence
alignment score = 1250.8
RMSD between 194 pruned atom pairs is 1.196 angstroms; (across all 316 pairs:
2.691)
> matchmaker #8/C to #4/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain E (#4) with 6ttu, chain C (#8), sequence
alignment score = 1250.8
RMSD between 194 pruned atom pairs is 1.196 angstroms; (across all 316 pairs:
2.691)
> ui tool show Matchmaker
> matchmaker #8/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with 6ttu, chain R (#8), sequence
alignment score = 466.8
RMSD between 39 pruned atom pairs is 1.214 angstroms; (across all 78 pairs:
14.356)
> matchmaker #8/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with 6ttu, chain R (#8), sequence
alignment score = 466.8
RMSD between 39 pruned atom pairs is 1.214 angstroms; (across all 78 pairs:
14.356)
> ui tool show Matchmaker
> select #8/C
2606 atoms, 2650 bonds, 1 pseudobond, 326 residues, 2 models selected
> delete sel
> close #6
> show #!7 models
> hide #!7 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!1 models
> hide #!1 models
> show #!7 models
> hide #!7 models
> show #!5 models
> hide #!5 models
> select add #4
19807 atoms, 20027 bonds, 1225 residues, 1 model selected
> select add #8
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 4 models selected
> combine sel
Remapping chain ID 'D' in 6ttu #8 to 'F'
Remapping chain ID 'R' in 6ttu #8 to 'S'
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: Corrected atom nomenclature of 21 residues in model #6 to IUPAC-IUB
standards.
> select clear
> clipper associate #3 toModel #6
Opened cryosparc_P9_J635_008_volume_map_sharp.mrc z flip as #6.1.1.1, grid
size 480,480,480, pixel 0.825, shown at step 1, values float32
> open
> /home/pinkie/Documents/Charlotte/2024_01_28/cryosparc_P9_J635_008_volume_map_sharp.mrc
Opened cryosparc_P9_J635_008_volume_map_sharp.mrc as #3, grid size
480,480,480, pixel 0.825, shown at level 0.0194, step 2, values float32
> volume #3 level 0.09358
> volume flip #3
Opened cryosparc_P9_J635_008_volume_map_sharp.mrc z flip as #9, grid size
480,480,480, pixel 0.825, shown at step 1, values float32
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 3 atomic models, 2 maps.
> hide #!6.2 models
> show #!6.2 models
> select add #6.2
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 8 models selected
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 3 atomic models, 2 maps.
> select add #6.2
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 8 models selected
> select add #6
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 15 models selected
> close #6
> hide #!9 models
> select add #4
19807 atoms, 20027 bonds, 1225 residues, 1 model selected
> select add #8
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 4 models selected
> combine sel
Remapping chain ID 'D' in 6ttu #8 to 'F'
Remapping chain ID 'R' in 6ttu #8 to 'S'
> hide #4 models
> select subtract #4
2984 atoms, 3047 bonds, 13 pseudobonds, 380 residues, 3 models selected
> hide #!8 models
> select subtract #8
Nothing selected
> select add #6
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 3 models selected
> show #!9 models
> fitmap #6 inMap #9
Fit molecule combination (#6) to map
cryosparc_P9_J635_008_volume_map_sharp.mrc z flip (#9) using 22791 atoms
average map value = 0.0972, steps = 156
shifted from previous position = 11.3
rotated from previous position = 6.89 degrees
atoms outside contour = 12780, contour level = 0.093576
Position of combination (#6) relative to
cryosparc_P9_J635_008_volume_map_sharp.mrc z flip (#9) coordinates:
Matrix rotation and translation
0.99761374 -0.02131244 -0.06567050 24.02263064
0.01475408 0.99499981 -0.09878107 25.91855777
0.06744740 0.09757645 0.99293992 -32.41202814
Axis 0.81831656 -0.55476655 0.15030663
Axis point 0.00000000 350.66445652 246.92285576
Rotation angle (degrees) 6.89074657
Shift along axis 0.40762520
> select clear
> hide #!6 models
> show #!6 models
> ui tool show Matchmaker
> matchmaker #6/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with combination, chain R (#6),
sequence alignment score = 927
RMSD between 89 pruned atom pairs is 0.000 angstroms; (across all 89 pairs:
0.000)
> matchmaker #6/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with combination, chain R (#6),
sequence alignment score = 927
RMSD between 89 pruned atom pairs is 0.000 angstroms; (across all 89 pairs:
0.000)
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> ui tool show Matchmaker
> close #6
> show #4 models
> show #!8 models
> combine sel
No structures specified
> select add #4
19807 atoms, 20027 bonds, 1225 residues, 1 model selected
> select add #8
22791 atoms, 23074 bonds, 13 pseudobonds, 1605 residues, 4 models selected
> select subtract #8
19807 atoms, 20027 bonds, 1225 residues, 1 model selected
> hide #!8 models
> hide #4 models
> show #4 models
> show #!9 models
> select add #9
19807 atoms, 20027 bonds, 1225 residues, 3 models selected
> fitmap #4 inMap #9
Fit molecule fullmodel-v5.pdb (#4) to map
cryosparc_P9_J635_008_volume_map_sharp.mrc z flip (#9) using 19807 atoms
average map value = 0.1121, steps = 152
shifted from previous position = 10.8
rotated from previous position = 6.89 degrees
atoms outside contour = 9792, contour level = 0.093576
Position of fullmodel-v5.pdb (#4) relative to
cryosparc_P9_J635_008_volume_map_sharp.mrc z flip (#9) coordinates:
Matrix rotation and translation
0.99762593 -0.02091198 -0.06561397 23.93517264
0.01436000 0.99500528 -0.09878407 25.98670381
0.06735202 0.09760733 0.99294336 -32.41050705
Axis 0.81905399 -0.55453714 0.14710244
Axis point 0.00000000 350.60177499 247.72967437
Rotation angle (degrees) 6.88570607
Shift along axis 0.42594157
> select clear
> hide #!9 models
> show #!8 models
> ui tool show Matchmaker
> matchmaker #8/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with 6ttu, chain R (#8), sequence
alignment score = 499.8
RMSD between 39 pruned atom pairs is 1.214 angstroms; (across all 78 pairs:
14.356)
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
> matchmaker #8/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with 6ttu, chain R (#8), sequence
alignment score = 499.8
RMSD between 39 pruned atom pairs is 1.214 angstroms; (across all 78 pairs:
14.356)
> matchmaker #8/R to #4/R pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fullmodel-v5.pdb, chain R (#4) with 6ttu, chain R (#8), sequence
alignment score = 499.8
RMSD between 39 pruned atom pairs is 1.214 angstroms; (across all 78 pairs:
14.356)
> ui tool show Matchmaker
[Repeated 1 time(s)]Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 545.23.08
OpenGL renderer: NVIDIA RTX A5000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_GB.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: NOVATECH LTD
Model: PC-BX25094
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 32 AMD Ryzen Threadripper PRO 3955WX 16-Cores
Cache Size: 512 KB
Memory:
total used free shared buff/cache available
Mem: 251Gi 18Gi 2.4Gi 232Mi 230Gi 230Gi
Swap: 2.0Gi 1.6Gi 438Mi
Graphics:
2b:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41)
Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000]
Kernel driver in use: ast
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2022.9.24
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.19.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.5
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-QScore: 1.0
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 22 months ago
| Component: | Unassigned → Structure Comparison |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → MatchMaker: 'NoneType' object has no attribute 'setChecked' |
comment:2 by , 22 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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