Opened 22 months ago

Closed 21 months ago

#14378 closed defect (nonchimerax)

Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 655

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Thread 0x00007000060a6000 (most recent call first):
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1284 in run
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Current thread 0x00007ff85bd77680 (most recent call first):
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1626 in set_multishadow_view
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 227 in _draw_scene
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 165 in draw
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in 
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


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{
  "uptime" : 12000,
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro15,2",
  "coalitionID" : 3027,
  "osVersion" : {
    "train" : "macOS 13.2.1",
    "build" : "22D68",
    "releaseType" : "User"
  },
  "captureTime" : "2024-01-14 21:56:10.4949 +0100",
  "incident" : "6BC54AB1-CB1F-4671-A75E-93055AB2D251",
  "pid" : 3473,
  "cpuType" : "X86-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2024-01-13 22:18:35.1437 +0100",
  "procStartAbsTime" : 7696304588546,
  "procExitAbsTime" : 12500725993954,
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.3.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.3.0","CFBundleVersion":"1.3.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"4756FBF2-5D21-596E-9C83-222F4986F6F5","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "FD8E30AB-139D-E3D3-98BA-CB41D3FB2F54",
  "throttleTimeout" : 2147483647,
  "wakeTime" : 216,
  "bridgeVersion" : {"build":"20P3045","train":"7.2"},
  "sleepWakeUUID" : "12331A03-71EB-471A-9EA8-63543200FDB5",
  "sip" : "enabled",
  "exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
  "asi" : {"libsystem_c.dylib":["abort() called"]},
  "asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : 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    "arch" : "x86_64",
    "base" : 4597379072,
    "size" : 62603264,
    "uuid" : "9112000d-375c-34f0-9a66-9d68f91a12cd",
    "path" : "\/Applications\/ChimeraX-1.3.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas.0.dylib",
    "name" : "libopenblas.0.dylib"
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    "path" : "\/Applications\/ChimeraX-1.3.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt5\/Qt\/lib\/QtWebEngineCore.framework\/Versions\/5\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
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    "arch" : "x86_64h",
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    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
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    "size" : 2510848,
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    "path" : "\/Applications\/ChimeraX-1.3.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
    "name" : "Python",
    "CFBundleVersion" : "3.9.6"
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],
  "sharedCache" : {
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  "size" : 21474836480,
  "uuid" : "57815a20-af2c-3b56-9006-23abde7962b0"
},
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "61675b89201f677a9a4cbd65",
      "factorPackIds" : {
        "HEALTH_FEATURE_AVAILABILITY" : "65287aa4be905e686a05f0a2"
      },
      "deploymentId" : 240000079
    },
    {
      "rolloutId" : "62699e1ec1ff2978b47f6c3b",
      "factorPackIds" : {
        "SIRI_FIND_MY_CONFIGURATION_FILES" : "652805151bce5442b8d752e1"
      },
      "deploymentId" : 240000031
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/lfu/Downloads/7fik.cif

7fik.cif title:  
The cryo-EM structure of the CR subunit from X. laevis NPC [more info...]  
  
Chain information for 7fik.cif #1  
---  
Chain | Description | UniProt  
A a | MGC83295 protein | Q642R6_XENLA  
B b | Nuclear pore complex protein Nup85 | NUP85_XENLA  
C c | MGC154553 protein | Q05AW3_XENLA  
D d | Nucleoporin SEH1-B | SEH1B_XENLA  
E e | outer Nup160 |  
F f | MGC83926 protein | Q66IZ6_XENLA  
G g | Nuclear pore complex protein Nup98-Nup96 | A0A1L8HBE3_XENLA  
H h | Protein SEC13 homolog | Q6GNX0_XENLA  
I i | Nuclear pore complex protein | A2RV69_XENLA  
J | nuclear pore complex protein Nup133 | A0A1L8H1I9_XENLA  
K L M N O | Nup358 complex, clamps | A0A1L8HGL2_XENLA  
P S p s | Nuclear pore complex protein Nup93 | NUP93_XENLA  
W | Nup155-prov protein | Q7ZWL0_XENLA  
X | Nup98 |  
Y | Nucleoporin Nup88A | Q707N0_XENLA  
j | outer Nup133 | A0A1L8H1I9_XENLA  
  

> sequence chain #1/K#1/L#1/M#1/N#1/O

Alignment identifier is 1  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /L:4-738

3372 atoms, 3362 bonds, 9 pseudobonds, 679 residues, 2 models selected  

> select /M:59-738

3246 atoms, 3238 bonds, 7 pseudobonds, 654 residues, 2 models selected  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /K:8-738

3460 atoms, 3452 bonds, 7 pseudobonds, 697 residues, 2 models selected  

> select /O:13-738

3391 atoms, 3380 bonds, 10 pseudobonds, 683 residues, 2 models selected  

> sequence chain #1/K#1/L#1/M#1/N#1/O

Alignment identifier is 1  

> select /K-O:586-632

1170 atoms, 1165 bonds, 235 residues, 1 model selected  

> select /K-O:586-685

2436 atoms, 2429 bonds, 2 pseudobonds, 489 residues, 2 models selected  

> select /K:8-738/L,N:4-738/M:59-738/O:13-738

16949 atoms, 16903 bonds, 41 pseudobonds, 3414 residues, 2 models selected  

> select /J:69-1138

5029 atoms, 5024 bonds, 4 pseudobonds, 1015 residues, 2 models selected  

> select /J:69-1138

5029 atoms, 5024 bonds, 4 pseudobonds, 1015 residues, 2 models selected  

> sequence chain #1/K#1/L#1/M#1/N#1/O

Alignment identifier is 2  

> sequence chain #1/K#1/L#1/M#1/N#1/O

Alignment identifier is 3  

> sequence chain #1/K#1/L#1/M#1/N#1/O

Alignment identifier is 4  

> sequence chain #1/K#1/L#1/M#1/N#1/O

Alignment identifier is 2  

> open "/Users/lfu/Work/Experiment/cargos/HIV-1 capsid/HIV-1 capsid and FG
> interaction/information/capsid mutant/structure/with CPSF6/capsid/3j3q.cif"

3j3q.cif title:  
Atomic-level structure of the entire HIV-1 capsid [more info...]  
  
Chain information for 3j3q.cif #2  
---  
Chain | Description | UniProt  
0 1 10 11 12 13 14 15 16 17 18 19 1A 1B 1C 1D 1E 1F 1G 1H 1I 1J 1K 1L 1M 1N 1O
1P 1Q 1R 1S 1T 1U 1V 1W 1X 1Y 1Z 1a 1b 1c 1d 1e 1f 1g 1h 1i 1j 1k 1l 1m 1n 1o
1p 1q 1r 1s 1t 1u 1v 1w 1x 1y 1z 2 20 21 22 23 24 25 26 27 28 29 2A 2B 2C 2D
2E 2F 2G 2H 2I 2J 2K 2L 2M 2N 2O 2P 2Q 2R 2S 2T 2U 2V 2W 2X 2Y 2Z 2a 2b 2c 2d
2e 2f 2g 2h 2i 2j 2k 2l 2m 2n 2o 2p 2q 2r 2s 2t 2u 2v 2w 2x 2y 2z 3 30 31 32
33 34 35 36 37 38 39 3A 3B 3C 3D 3E 3F 3G 3H 3I 3J 3K 3L 3M 3N 3O 3P 3Q 3R 3S
3T 3U 3V 3W 3X 3Y 3Z 3a 3b 3c 3d 3e 3f 3g 3h 3i 3j 3k 3l 3m 3n 3o 3p 3q 3r 3s
3t 3u 3v 3w 3x 3y 3z 4 40 41 42 43 44 45 46 47 48 49 4A 4B 4C 4D 4E 4F 4G 4H
4I 4J 4K 4L 4M 4N 4O 4P 4Q 4R 4S 4T 4U 4V 4W 4X 4Y 4Z 4a 4b 4c 4d 4e 4f 4g 4h
4i 4j 4k 4l 4m 4n 4o 4p 4q 4r 4s 4t 4u 4v 4w 4x 4y 4z 5 50 51 52 53 54 55 56
57 58 59 5A 5B 5C 5D 5E 5F 5G 5H 5I 5J 5K 5L 5M 5N 5O 5P 5Q 5R 5S 5T 5U 5V 5W
5X 5Y 5Z 5a 5b 5c 5d 5e 5f 5g 5h 5i 5j 5k 5l 5m 5n 5o 5p 5q 5r 5s 5t 5u 5v 5w
5x 5y 5z 6 60 61 62 63 64 65 66 67 68 69 6A 6B 6C 6D 6E 6F 6G 6H 6I 6J 6K 6L
6M 6N 6O 6P 6Q 6R 6S 6T 6U 6V 6W 6X 6Y 6Z 6a 6b 6c 6d 6e 6f 6g 6h 6i 6j 6k 6l
6m 6n 6o 6p 6q 6r 6s 6t 6u 6v 6w 6x 6y 6z 7 70 71 72 73 74 75 76 77 78 79 7A
7B 7C 7D 7E 7F 7G 7H 7I 7J 7K 7L 7M 7N 7O 7P 7Q 7R 7S 7T 7U 7V 7W 7X 7Y 7Z 7a
7b 7c 7d 7e 7f 7g 7h 7i 7j 7k 7l 7m 7n 7o 7p 7q 7r 7s 7t 7u 7v 7w 7x 7y 7z 8
80 81 82 83 84 85 86 87 88 89 8A 8B 8C 8D 8E 8F 8G 8H 8I 8J 8K 8L 8M 8N 8O 8P
8Q 8R 8S 8T 8U 8V 8W 8X 8Y 8Z 8a 8b 8c 8d 8e 8f 8g 8h 8i 8j 8k 8l 8m 8n 8o 8p
8q 8r 8s 8t 8u 8v 8w 8x 8y 8z 9 90 91 92 93 94 95 96 97 98 99 9A 9B 9C 9D 9E
9F 9G 9H 9I 9J 9K 9L 9M 9N 9O 9P 9Q 9R 9S 9T 9U 9V 9W 9X 9Y 9Z 9a 9b 9c 9d 9e
9f 9g 9h 9i 9j 9k 9l 9m 9n 9o 9p 9q 9r 9s 9t 9u 9v 9w 9x 9y 9z A B C D E F G H
I J K L M N O P Q R S T U V W X Y Z a a0 a1 a2 a3 a4 a5 a6 a7 a8 a9 aA aB aC
aD aE aF aG aH aI aJ aK aL aM aN aO aP aQ aR aS aT aU aV aW aX aY aZ aa ab ac
ad ae af ag ah ai aj ak al am an ao ap aq ar as at au av aw ax ay az b b0 b1
b2 b3 b4 b5 b6 b7 b8 b9 bA bB bC bD bE bF bG bH bI bJ bK bL bM bN bO bP bQ bR
bS bT bU bV bW bX bY bZ ba bb bc bd be bf bg bh bi bj bk bl bm bn bo bp bq br
bs bt bu bv bw bx by bz c c0 c1 c2 c3 c4 c5 c6 c7 c8 c9 cA cB cC cD cE cF cG
cH cI cJ cK cL cM cN cO cP cQ cR cS cT cU cV cW cX cY cZ ca cb cc cd ce cf cg
ch ci cj ck cl cm cn co cp cq cr cs ct cu cv cw cx cy cz d d0 d1 d2 d3 d4 d5
d6 d7 d8 d9 dA dB dC dD dE dF dG dH dI dJ dK dL dM dN dO dP dQ dR dS dT dU dV
dW dX dY dZ da db dc dd de df dg dh di dj dk dl dm dn do dp dq dr ds dt du dv
dw dx dy dz e e0 e1 e2 e3 e4 e5 e6 e7 e8 e9 eA eB eC eD eE eF eG eH eI eJ eK
eL eM eN eO eP eQ eR eS eT eU eV eW eX eY eZ ea eb ec ed ee ef eg eh ei ej ek
el em en eo ep eq er es et eu ev ew ex ey ez f f0 f1 f2 f3 f4 f5 f6 f7 f8 f9
fA fB fC fD fE fF fG fH fI fJ fK fL fM fN fO fP fQ fR fS fT fU fV fW fX fY fZ
fa fb fc fd fe ff fg fh fi fj fk fl fm fn fo fp fq fr fs ft fu fv fw fx fy fz
g g0 g1 g2 g3 g4 g5 g6 g7 g8 g9 gA gB gC gD gE gF gG gH gI gJ gK gL gM gN gO
gP gQ gR gS gT gU gV gW gX gY gZ ga gb gc gd ge gf gg gh gi gj gk gl gm gn go
gp gq gr gs gt gu gv gw gx gy gz h h0 h1 h2 h3 h4 h5 h6 h7 h8 h9 hA hB hC hD
hE hF hG hH hI hJ hK hL hM hN hO hP hQ hR hS hT hU hV hW hX hY hZ ha hb hc hd
he hf hg hh hi hj hk hl hm hn ho hp hq hr hs ht hu hv hw hx hy hz i i0 i1 i2
i3 i4 i5 i6 i7 i8 i9 iA iB iC iD iE iF iG iH iI iJ iK iL iM iN iO iP iQ iR iS
iT iU iV iW iX iY iZ ia ib ic id ie if ig ih ii ij ik il im in io ip iq ir is
it iu iv iw ix iy iz j j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 jA jB jC jD jE jF jG jH
jI jJ jK jL jM jN jO jP jQ jR jS jT jU jV jW jX jY jZ ja jb jc jd je jf jg jh
ji jj jk jl jm jn jo jp jq jr js jt ju jv jw jx jy jz k k0 k1 k2 k3 k4 k5 k6
k7 k8 k9 kA kB kC kD kE kF kG kH kI kJ kK kL kM kN kO kP kQ kR kS kT kU kV kW
kX kY kZ ka kb kc kd ke kf kg kh ki kj kk kl km kn ko kp kq kr ks kt ku kv kw
kx ky kz l l0 l1 l2 l3 l4 l5 l6 l7 l8 l9 lA lB lC lD lE lF lG lH lI lJ lK lL
lM lN lO lP lQ lR la lb lc ld le lf lg lh li lj lk ll lm ln lo lp lq lr ls lt
lu lv lw lx ly lz m n o p q r s t u v w x y z | capsid protein | Q79791_9HIV1  
  

> hide #!1 models


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Volumes/LF-capsid1T/experiment/HIV-1 capsid and FG
> interaction/information/HIV-1 capsid/3J3Y/3j3y.cif" format mmcif

No such file/path: /Volumes/LF-capsid1T/experiment/HIV-1 capsid and FG
interaction/information/HIV-1 capsid/3J3Y/3j3y.cif  




OpenGL version: 4.1 INTEL-20.2.50
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,2
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0)
      OS Loader Version: 564.40.4~66

Software:

    System Software Overview:

      System Version: macOS 13.2.1 (22D68)
      Kernel Version: Darwin 22.3.0
      Time since boot: 2 days, 1 hour, 23 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 655:

      Chipset Model: Intel Iris Plus Graphics 655
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea5
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.5.30
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0

Change History (2)

comment:1 by pett, 21 months ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Graphics hardware encountered an error and was reset

comment:2 by Tom Goddard, 21 months ago

Resolution: → nonchimerax
Status: assigned → closed
Summary: Graphics hardware encountered an error and was reset → Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 655

Apple Intel graphics driver crash.

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