'Segmentation' object has no attribute 'map_path'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-6.7.0-gentoo-x86_64-AMD_Ryzen_9_5900X_12-Core_Processor-with-glibc2.38
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
note | /home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/superqt/collapsible/_collapsible.py:4: PythonQtWarning: Selected
binding 'pyqt5' could not be found; falling back to 'pyqt6'  
from qtpy.QtCore import (  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /home/adrian/MPI/fmg1/J203_010_flex_map_deepEM.seg

Traceback (most recent call last):  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/dialog.py", line 334, in _qt_safe  
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 131, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 213, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 513, in collated_open  
return remember_data_format()  
^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 484, in remember_data_format  
models, status = func(*func_args, **func_kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/__init__.py", line 45, in open  
return open_segmentation(session, path, file_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/segfile.py", line 116, in open_segmentation  
seg = read_segmentation(session, path, open = False)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/segfile.py", line 317, in read_segmentation  
v = map_for_segmentation(session, s.map_path)  
^^^^^^^^^^  
AttributeError: 'Segmentation' object has no attribute 'map_path'  
  
AttributeError: 'Segmentation' object has no attribute 'map_path'  
  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/segfile.py", line 317, in read_segmentation  
v = map_for_segmentation(session, s.map_path)  
^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open /home/adrian/MPI/fmg1/J203_010_flex_map_deepEM.mrc format mrc

Opened J203_010_flex_map_deepEM.mrc as #1, grid size 420,420,420, pixel 0.955,
shown at level 0.00047, step 2, values float32  

> volume #1 level 0.02394

> volume #1 level 0.01053

> volume #1 step 1

> ui tool show "Segment Map"

> volume #1 level 0.01762

Segmenting J203_010_flex_map_deepEM.mrc, density threshold 0.017623  
Only showing 60 of 75 regions.  
Showing 60 of 75 region surfaces  
13754 watershed regions, grouped to 75 regions  
Showing J203_010_flex_map_deepEM.seg - 75 regions, 60 surfaces  

> close #1

> ui mousemode right select

Drag select of 17295, 4445 of 36600 triangles, 17312, 18025 of 23680
triangles, 17287, 16373 of 16392 triangles  
Grouped 3 regions  
Drag select of 17263, 17307, 53025 of 53036 triangles, 17264, 44522 of 44600
triangles, 17274, 30604 of 38604 triangles, 17278, 17656 of 38952 triangles,
17303, 77 of 31716 triangles, 17292, 3117 of 35244 triangles, 17280, 28342 of
28996 triangles, 17277, 17275, 17289, 17284, 6030 of 21952 triangles, 17301,
640 of 21008 triangles, 17141, 17308, 17297, 17299, 1348 of 17056 triangles,
17198, 7874 of 11968 triangles, 16466, 17233  
Drag select of 17263, 42880 of 61044 triangles, 17307, 29299 of 53036
triangles, 17264, 27242 of 44600 triangles, 17274, 2057 of 38604 triangles,
17278, 27868 of 38952 triangles, 17292, 4295 of 35244 triangles, 17280, 10332
of 28996 triangles, 17277, 25400 of 28768 triangles, 17275, 18958 of 26616
triangles, 17289, 15038 of 24328 triangles, 17141, 17308, 17297, 17198, 23 of
11968 triangles, 16466, 17233, 6297 of 10508 triangles  
Grouped 16 regions  
Drag select of 17304, 222 of 28336 triangles, 17316, 2699 of 363620 triangles  
Grouped 2 regions  
Drag select of 17305, 15437 of 56336 triangles, 17291, 11534 of 45124
triangles, 17296, 17302, 17272, 36634 of 40612 triangles, 17300, 31084 of
31172 triangles, 17311, 8506 of 27168 triangles, 17294, 19154 of 27208
triangles, 17201, 10308 of 17936 triangles, 17237, 7725 of 14240 triangles,
17122, 13064 of 13224 triangles, 17142, 823 of 10480 triangles  
Grouped 12 regions  
Drag select of 17150, 1943 of 18412 triangles, 17318, 15716 of 299452
triangles  
Grouped 2 regions  
Drag select of 17306, 16318 of 52092 triangles, 17121, 35426 of 35676
triangles, 17303, 27279 of 31716 triangles, 17314, 23091 of 25640 triangles,
17181, 14687 of 22048 triangles, 17221, 17319, 66316 of 314708 triangles  
Grouped 7 regions  
Drag select of 17284, 8675 of 21952 triangles, 17310, 10696 of 25840
triangles, 17265, 25260 of 27676 triangles, 17301, 19104 of 21008 triangles,
17279, 3919 of 22100 triangles, 17309, 20667 of 20676 triangles, 17267, 17268,
18 of 19332 triangles, 17299, 4034 of 17056 triangles, 17317, 281 of 384392
triangles  
Grouped 10 regions  
Drag select of 17270, 1280 of 83176 triangles, 17281, 5999 of 35368 triangles,
17147, 6304 of 18392 triangles, 17193, 9301 of 16260 triangles  
Grouped 4 regions  
Drag select of 17266, 20 of 125840 triangles  
Drag select of 17266, 544 of 125840 triangles  
Ungrouped to 12 regions  
Drag select of 17282, 4064 of 20100 triangles, 17321, 3445 of 547436
triangles, 17133, 699 of 45804 triangles, 17180, 3465 of 10864 triangles  
Drag select of 17285, 2228 of 21516 triangles, 17282, 16 of 20100 triangles,
17321, 4707 of 547436 triangles  
Grouped 3 regions  
Drag select of 17269, 33764 of 35532 triangles, 17273, 9002 of 10524
triangles, 17242, 11322 of 12460 triangles, 16665, 8202 of 10500 triangles,
17127, 3624 of 9480 triangles, 17236, 354 of 25724 triangles, 17262, 2894 of
12552 triangles, 17260, 3357 of 8404 triangles  
Grouped 8 regions  
Drag select of 17298, 22959 of 58236 triangles, 17286, 41 of 41680 triangles,
17320, 41719 of 459324 triangles  
Grouped 3 regions  
Drag select of 17322, 651 of 143944 triangles  
Drag select of 17322, 1371 of 143944 triangles  
Ungrouped to 4 regions  
Drag select of 17270, 388 of 83176 triangles  
Ungrouped to 7 regions  

> select #2.8

1 model selected  
Ungrouped to 27 regions  
Drag select of 16775, 17161, 2828 of 9124 triangles, 17180, 6015 of 10864
triangles, 17257, 56 of 628 triangles, 17323, 4225 of 577400 triangles, 17193,
3075 of 16260 triangles, 17163, 2377 of 42796 triangles, 17135, 9492 of 27216
triangles, 17204, 17187, 1196 of 3176 triangles, 17186, 4286 of 7920
triangles, 16704, 70 of 6784 triangles, 17038, 1416 of 2716 triangles, 17007,
236 of 4168 triangles, 16851, 268 of 3396 triangles  
Drag select of 17193, 2181 of 16260 triangles, 17163, 277 of 42796 triangles,
17135, 4654 of 27216 triangles, 17204, 17187, 878 of 3176 triangles, 17186,
3149 of 7920 triangles  
Drag select of 17163, 173 of 42796 triangles  
Ungrouped to 21 regions, but did not show all surfaces, see Options  
Drag select of 16775, 17161, 965 of 9124 triangles, 17180, 5737 of 10864
triangles, 17257, 22 of 628 triangles, 17323, 3295 of 577400 triangles, 17193,
7318 of 16260 triangles, 17135, 9355 of 27216 triangles, 17204, 17187, 1513 of
3176 triangles, 17186, 5128 of 7920 triangles, 17038, 426 of 2716 triangles,
17007, 69 of 4168 triangles, 16507, 1517 of 5316 triangles  
Grouped 13 regions  
Drag select of 17147, 5097 of 18392 triangles, 17281, 17816 of 35368
triangles, 16731, 181 of 6028 triangles, 17326, 5921 of 655472 triangles  
Grouped 4 regions  
Drag select of 17212, 3003 of 8064 triangles, 17327, 17714 of 709448 triangles  
Grouped 2 regions  
Drag select of 17328, 1061 of 711196 triangles  

> select clear

[Repeated 1 time(s)]Drag select of 17328, 5596 of 711196 triangles  
Ungrouped to 2 regions  
Drag select of 17327, 1245 of 709448 triangles  
Ungrouped to 4 regions  
Ungrouped to 26 regions, but did not show all surfaces, see Options  
Drag select of 17212, 2455 of 8064 triangles, 16562, 3764 of 8028 triangles,
17159, 6095 of 20404 triangles, 15129, 1267 of 1728 triangles, 14270, 783 of
1188 triangles, 14271, 681 of 2548 triangles, 15682, 125 of 1528 triangles,
17186, 2663 of 7920 triangles, 17193, 15169 of 16260 triangles, 17135, 246 of
27216 triangles  
Grouped 10 regions  
Drag select of 16541, 1922 of 5044 triangles, 16888, 3127 of 3804 triangles,
17329, 25559 of 80612 triangles  
Grouped 3 regions  
Drag select of 17323, 6596 of 577400 triangles, 17180, 3022 of 10864 triangles  
Grouped 2 regions  
Drag select of 17007, 1293 of 4168 triangles, 17038, 348 of 2716 triangles,
17331, 5629 of 587896 triangles  
Grouped 3 regions  
Drag select of 433, 16862, 110 of 2200 triangles, 17332, 4368 of 593576
triangles  
Grouped 3 regions  
Drag select of 17161, 58 of 9124 triangles  
Drag select of 16744, 399 of 5260 triangles, 16872, 349 of 2548 triangles,
16851, 82 of 3396 triangles, 17161, 16 of 9124 triangles, 17333, 868 of 595120
triangles  
Grouped 4 regions  
Drag select of 17161, 1463 of 9124 triangles, 17334, 3133 of 601928 triangles  
Grouped 2 regions  
Drag select of 17324, 6006 of 99772 triangles  
Ungrouped to 8 regions  
Drag select of 17236, 45 of 25724 triangles  
Ungrouped to 11 regions  
Drag select of 17204, 1412 of 1604 triangles, 17330, 2882 of 88696 triangles  
Grouped 2 regions  
Drag select of 14280, 25 of 688 triangles, 5556, 17336, 8723 of 90280
triangles  
Drag select of 14280, 656 of 688 triangles, 5556, 286 of 480 triangles, 17336,
5295 of 90280 triangles  
Grouped 3 regions  
Drag select of 17325, 218 of 535172 triangles, 16667, 138 of 3696 triangles  
Grouped 2 regions  
Drag select of 16665, 2493 of 10500 triangles, 17269, 25167 of 35532
triangles, 17260, 2779 of 8404 triangles, 17242, 9100 of 12460 triangles,
17262, 2573 of 12552 triangles, 17273, 8110 of 10524 triangles  
Grouped 6 regions  
Drag select of 17127, 1218 of 9480 triangles, 17339, 1796 of 73844 triangles  
Grouped 2 regions  

> color #2 #b2b2b250

> undo

[Repeated 1 time(s)]Drag select of 17335, 7064 of 608328 triangles  

> view #2 clip false

Drag select of 16645, 162 of 3716 triangles, 16992, 39 of 1732 triangles,
17335, 284 of 608328 triangles, 17337, 50 of 90732 triangles  
Select a density map in the Segment map field  

> open /home/adrian/MPI/fmg1/J203_010_flex_map_deepEM.seg format segger

Traceback (most recent call last):  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/widgets/htmlview.py", line 353, in intercept  
chimerax_intercept(*args, view=view, session=session)  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/widgets/htmlview.py", line 455, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 375, in thread_safe  
func(*args, **kw)  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/widgets/htmlview.py", line 446, in defer  
cxcmd(session, topic)  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/ui/widgets/htmlview.py", line 464, in cxcmd  
run(session, cmd)  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 131, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 213, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 513, in collated_open  
return remember_data_format()  
^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 484, in remember_data_format  
models, status = func(*func_args, **func_kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/__init__.py", line 45, in open  
return open_segmentation(session, path, file_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/segfile.py", line 116, in open_segmentation  
seg = read_segmentation(session, path, open = False)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/segfile.py", line 317, in read_segmentation  
v = map_for_segmentation(session, s.map_path)  
^^^^^^^^^^  
AttributeError: 'Segmentation' object has no attribute 'map_path'  
  
AttributeError: 'Segmentation' object has no attribute 'map_path'  
  
File "/home/adrian/bin/chimerax-1.7.1/lib/python3.11/site-
packages/chimerax/segger/segfile.py", line 317, in read_segmentation  
v = map_for_segmentation(session, s.map_path)  
^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 535.154.05
OpenGL renderer: NVIDIA GeForce RTX 3070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_GB.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=wayland
DESKTOP_SESSION=plasma
XDG_SESSION_DESKTOP=plasma
XDG_CURRENT_DESKTOP=KDE
WAYLAND_DISPLAY=wayland-0
DISPLAY=:0
Manufacturer: System manufacturer
Model: System Product Name
OS: Gentoo 2.14 n/a
Architecture: 64bit ELF
Virtual Machine: none
CPU: 24 AMD Ryzen 9 5900X 12-Core Processor
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            62Gi        11Gi        21Gi       1.6Gi        31Gi        51Gi
	Swap:           39Gi       8.6Mi        39Gi

Graphics:
	0b:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA104 [GeForce RTX 3070 Lite Hash Rate] [10de:2488] (rev a1)	
	Subsystem: Micro-Star International Co., Ltd. [MSI] GA104 [GeForce RTX 3070 Lite Hash Rate] [1462:3904]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
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    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
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    nibabel: 5.0.1
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    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
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    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
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    py-cpuinfo: 9.0.0
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    PyOpenGL-accelerate: 3.1.7
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    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
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    pytz: 2023.3.post1
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    requests: 2.31.0
    scipy: 1.11.1
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    sfftk-rw: 0.7.3
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    sphinxcontrib-blockdiag: 3.0.0
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    sphinxcontrib-htmlhelp: 2.0.5
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    sphinxcontrib-serializinghtml: 1.1.10
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    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
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    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

[Tom Goddard]

The error is because the saved Segger segmentation (.seg) does not contain the attribute giving the path to the map that was segmented. This happens when the user segments the map, then closes the map, then saves the segmentation. The .seg reader should handle this but currently raises an error.

[Tom Goddard]

Fixed.

Made segmentation reader handle missing map_path attribute.