glDrawBuffer: invalid operation

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-6.5.0-14-generic-x86_64-with-glibc2.38
ChimeraX Version: 1.7rc202311220128 (2023-11-22 01:28:33 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.7rc202311220128 (2023-11-22)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 6u5z format mmcif fromDatabase pdb

6u5z title:  
Cryo-EM structure of E. coli LonA S679A [more info...]  
  
Chain information for 6u5z #1  
---  
Chain | Description | UniProt  
A B C D E F | Lon protease | C3TLS2_ECOLX 1-784  
  

> show atoms

> hide atoms

> show cartoons

> open /home/azinas/Projects/Lon/Lon-LarA-max.pdb

Chain information for Lon-LarA-max.pdb #2  
---  
Chain | Description  
A C D E F | No description available  
B | No description available  
L | No description available  
  

> show cartoons

> hide atoms

> color #1 #c64600ff

> color #1 coral

> color #1 #968cc7ff

> color #2 #33d17aff

> color #2 #efe09bff

> select add #1

24606 atoms, 24972 bonds, 3174 residues, 1 model selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.96647,-0.25661,-0.0089855,39.479,-0.25521,-0.96388,0.076215,280.9,-0.028218,-0.071366,-0.99705,303.19

> view matrix models
> #1,0.97582,0.021246,0.21754,-31.257,0.01102,-0.99878,0.048114,254.96,0.2183,-0.044553,-0.97487,264.37

> view matrix models
> #1,0.9946,0.10002,0.027595,-16.487,0.10367,-0.96909,-0.22388,278.51,0.004349,0.22553,-0.97423,256.51

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.9946,0.10002,0.027595,68.494,0.10367,-0.96909,-0.22388,371.96,0.004349,0.22553,-0.97423,348.08

> view matrix models
> #1,0.9946,0.10002,0.027595,71.289,0.10367,-0.96909,-0.22388,368.41,0.004349,0.22553,-0.97423,348.21

> view matrix models
> #1,0.9946,0.10002,0.027595,76.695,0.10367,-0.96909,-0.22388,366.46,0.004349,0.22553,-0.97423,342.55

> ui tool show Matchmaker

> matchmaker #1/A to #2/B pairing ss

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with 6u5z, chain A (#1), sequence
alignment score = 1822.3  
RMSD between 213 pruned atom pairs is 1.244 angstroms; (across all 528 pairs:
4.285)  
  

> view matrix models
> #1,0.50125,0.82487,-0.2614,90.711,0.84108,-0.53544,-0.076802,191.95,-0.20332,-0.18136,-0.96217,410.56

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.90597,0.27979,-0.3177,118.08,0.277,-0.9593,-0.054912,317.98,-0.32013,-0.038255,-0.9466,404.63

> view matrix models
> #1,0.99328,-0.11464,-0.015647,114.82,-0.11154,-0.98467,0.13409,344.39,-0.03078,-0.13145,-0.99085,385.71

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.99328,-0.11464,-0.015647,112.86,-0.11154,-0.98467,0.13409,339.19,-0.03078,-0.13145,-0.99085,387.37

> view matrix models
> #1,0.99328,-0.11464,-0.015647,112.24,-0.11154,-0.98467,0.13409,336.42,-0.03078,-0.13145,-0.99085,393.07

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.  

> select subtract #1

Nothing selected  

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.  

> open /home/azinas/Projects/Lon/cryosparc_P7_J290_009_volume_map.mrc

Summary of feedback from opening
/home/azinas/Projects/Lon/cryosparc_P7_J290_009_volume_map.mrc  
---  
notes | open kw {}  
  
Opened cryosparc_P7_J290_009_volume_map.mrc as #3, grid size 448,448,448,
pixel 1.21, shown at level 0.0605, step 2, values float32  

> select add #2

25829 atoms, 26224 bonds, 3339 residues, 1 model selected  

> select add #1

50435 atoms, 51196 bonds, 6513 residues, 2 models selected  

> view matrix models
> #1,0.99328,-0.11464,-0.015647,199.14,-0.11154,-0.98467,0.13409,363.04,-0.03078,-0.13145,-0.99085,451.38,#2,1,0,0,86.893,0,1,0,26.614,0,0,1,58.311

> view matrix models
> #1,0.99328,-0.11464,-0.015647,162.27,-0.11154,-0.98467,0.13409,379.71,-0.03078,-0.13145,-0.99085,443.63,#2,1,0,0,50.021,0,1,0,43.286,0,0,1,50.563

> view matrix models
> #1,0.99328,-0.11464,-0.015647,166.51,-0.11154,-0.98467,0.13409,382.41,-0.03078,-0.13145,-0.99085,449.43,#2,1,0,0,54.268,0,1,0,45.988,0,0,1,56.361

> volume #3 step 1

> volume #3 level 0.1729

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.76347,-0.63559,-0.11459,280.8,-0.55624,-0.73728,0.38342,370.05,-0.32819,-0.22899,-0.91644,489.83,#2,0.833,0.52533,0.17359,-57.671,-0.47398,0.83944,-0.26587,245.35,-0.28539,0.13919,0.94825,102.31

> view matrix models
> #1,0.78144,-0.55714,0.28097,208.91,-0.62022,-0.64419,0.4476,356.58,-0.068378,-0.52404,-0.84894,484.48,#2,0.83567,0.49912,-0.22922,37.297,-0.54921,0.76351,-0.33974,294.9,0.0054424,0.4098,0.91216,-12.536

> view matrix models
> #1,0.75582,-0.57157,0.31945,208.36,-0.65476,-0.66344,0.36212,376.29,0.0049604,-0.48286,-0.87568,473.7,#2,0.81127,0.52134,-0.26466,45.932,-0.57997,0.77486,-0.25144,279.54,0.073986,0.35748,0.93098,-20.807

> select subtract #2

24606 atoms, 24972 bonds, 3174 residues, 1 model selected  

> select add #3

24606 atoms, 24972 bonds, 3174 residues, 3 models selected  

> fitmap #1 inMap #3

Fit molecule 6u5z (#1) to map cryosparc_P7_J290_009_volume_map.mrc (#3) using
24606 atoms  
average map value = 0.1823, steps = 192  
shifted from previous position = 13  
rotated from previous position = 20.3 degrees  
atoms outside contour = 13374, contour level = 0.17292  
  
Position of 6u5z (#1) relative to cryosparc_P7_J290_009_volume_map.mrc (#3)
coordinates:  
Matrix rotation and translation  
0.89763698 -0.40231755 0.17996793 185.38287969  
-0.43428791 -0.87699524 0.20560499 409.90031649  
0.07511252 -0.26271652 -0.96194500 448.90386054  
Axis -0.97368180 0.21800365 -0.06646920  
Axis point 0.00000000 253.33101271 190.78415211  
Rotation angle (degrees) 166.08453683  
Shift along axis -120.98245329  
  

> select subtract #1

2 models selected  

> select add #2

25829 atoms, 26224 bonds, 3339 residues, 3 models selected  

> fitmap #2 inMap #3

Fit molecule Lon-LarA-max.pdb (#2) to map cryosparc_P7_J290_009_volume_map.mrc
(#3) using 25829 atoms  
average map value = 0.2185, steps = 116  
shifted from previous position = 7.65  
rotated from previous position = 4.68 degrees  
atoms outside contour = 10363, contour level = 0.17292  
  
Position of Lon-LarA-max.pdb (#2) relative to
cryosparc_P7_J290_009_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.78323429 0.57674751 -0.23217742 28.25439846  
-0.61865551 0.76005404 -0.19895532 284.20952510  
0.06172040 0.29946647 0.95210841 -14.27226863  
Axis 0.37529584 -0.22129577 -0.90010067  
Axis point 413.90900353 80.90830452 0.00000000  
Rotation angle (degrees) 41.60860500  
Shift along axis -39.44412873  
  

> select subtract #2

2 models selected  

> select subtract #3

Nothing selected  

> hide #1 models

> hide #!3 models

> color #2 bychain

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb

Chain information for
test_642d3_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_002_alphafold2_multimer_v3_model_3_seed_001.pdb

Chain information for
test_642d3_unrelaxed_rank_002_alphafold2_multimer_v3_model_3_seed_001.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_003_alphafold2_multimer_v3_model_4_seed_001.pdb

Chain information for
test_642d3_unrelaxed_rank_003_alphafold2_multimer_v3_model_4_seed_001.pdb #6  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_000.pdb

Chain information for
test_642d3_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_000.pdb #7  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb

Chain information for
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb #8  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_000.pdb

Chain information for
test_642d3_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_000.pdb #9  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_007_alphafold2_multimer_v3_model_2_seed_001.pdb

Chain information for
test_642d3_unrelaxed_rank_007_alphafold2_multimer_v3_model_2_seed_001.pdb #10  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_008_alphafold2_multimer_v3_model_3_seed_000.pdb

Chain information for
test_642d3_unrelaxed_rank_008_alphafold2_multimer_v3_model_3_seed_000.pdb #11  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_009_alphafold2_multimer_v3_model_1_seed_000.pdb

Chain information for
test_642d3_unrelaxed_rank_009_alphafold2_multimer_v3_model_1_seed_000.pdb #12  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open
> /home/azinas/Downloads/a/test_642d3_unrelaxed_rank_010_alphafold2_multimer_v3_model_1_seed_001.pdb

Chain information for
test_642d3_unrelaxed_rank_010_alphafold2_multimer_v3_model_1_seed_001.pdb #13  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> ui tool show Matchmaker

> matchmaker #4-13 to #2/A pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb,
chain A (#4), sequence alignment score = 2685.4  
RMSD between 171 pruned atom pairs is 1.211 angstroms; (across all 542 pairs:
6.182)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_002_alphafold2_multimer_v3_model_3_seed_001.pdb,
chain A (#5), sequence alignment score = 2685.4  
RMSD between 172 pruned atom pairs is 1.205 angstroms; (across all 542 pairs:
5.291)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_003_alphafold2_multimer_v3_model_4_seed_001.pdb,
chain A (#6), sequence alignment score = 2685.4  
RMSD between 177 pruned atom pairs is 1.224 angstroms; (across all 542 pairs:
6.128)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#7), sequence alignment score = 2675.8  
RMSD between 173 pruned atom pairs is 1.214 angstroms; (across all 542 pairs:
5.926)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2681.8  
RMSD between 178 pruned atom pairs is 1.230 angstroms; (across all 542 pairs:
5.575)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#9), sequence alignment score = 2681.8  
RMSD between 164 pruned atom pairs is 1.192 angstroms; (across all 542 pairs:
5.181)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_007_alphafold2_multimer_v3_model_2_seed_001.pdb,
chain A (#10), sequence alignment score = 2678.8  
RMSD between 169 pruned atom pairs is 1.187 angstroms; (across all 542 pairs:
5.113)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_008_alphafold2_multimer_v3_model_3_seed_000.pdb,
chain A (#11), sequence alignment score = 2678.2  
RMSD between 169 pruned atom pairs is 1.198 angstroms; (across all 542 pairs:
5.354)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_009_alphafold2_multimer_v3_model_1_seed_000.pdb,
chain A (#12), sequence alignment score = 2679.4  
RMSD between 172 pruned atom pairs is 1.206 angstroms; (across all 542 pairs:
4.919)  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_010_alphafold2_multimer_v3_model_1_seed_001.pdb,
chain A (#13), sequence alignment score = 2682.4  
RMSD between 173 pruned atom pairs is 1.188 angstroms; (across all 542 pairs:
4.792)  
  

> hide #2 models

> show #2 models

> matchmaker #4-13 to #2/B pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb,
chain A (#4), sequence alignment score = 2660.1  
RMSD between 173 pruned atom pairs is 1.286 angstroms; (across all 540 pairs:
4.188)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_002_alphafold2_multimer_v3_model_3_seed_001.pdb,
chain A (#5), sequence alignment score = 2660.1  
RMSD between 216 pruned atom pairs is 1.385 angstroms; (across all 540 pairs:
3.371)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_003_alphafold2_multimer_v3_model_4_seed_001.pdb,
chain A (#6), sequence alignment score = 2660.1  
RMSD between 170 pruned atom pairs is 1.271 angstroms; (across all 540 pairs:
4.160)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#7), sequence alignment score = 2663.7  
RMSD between 176 pruned atom pairs is 1.301 angstroms; (across all 540 pairs:
3.865)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2656.5  
RMSD between 214 pruned atom pairs is 1.423 angstroms; (across all 540 pairs:
3.482)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#9), sequence alignment score = 2656.5  
RMSD between 216 pruned atom pairs is 1.387 angstroms; (across all 540 pairs:
3.411)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_007_alphafold2_multimer_v3_model_2_seed_001.pdb,
chain A (#10), sequence alignment score = 2656.5  
RMSD between 219 pruned atom pairs is 1.381 angstroms; (across all 540 pairs:
3.335)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_008_alphafold2_multimer_v3_model_3_seed_000.pdb,
chain A (#11), sequence alignment score = 2652.9  
RMSD between 212 pruned atom pairs is 1.393 angstroms; (across all 540 pairs:
3.445)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_009_alphafold2_multimer_v3_model_1_seed_000.pdb,
chain A (#12), sequence alignment score = 2667.3  
RMSD between 219 pruned atom pairs is 1.341 angstroms; (across all 540 pairs:
3.142)  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_010_alphafold2_multimer_v3_model_1_seed_001.pdb,
chain A (#13), sequence alignment score = 2660.1  
RMSD between 237 pruned atom pairs is 1.365 angstroms; (across all 540 pairs:
3.210)  
  

> hide #13 models

> show #13 models

> hide #2 models

> show #2 models

> hide #2 models

> matchmaker #4 to #2/A pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb,
chain A (#4), sequence alignment score = 2685.4  
RMSD between 171 pruned atom pairs is 1.211 angstroms; (across all 542 pairs:
6.182)  
  

> matchmaker #5 to #2/B pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_002_alphafold2_multimer_v3_model_3_seed_001.pdb,
chain A (#5), sequence alignment score = 2660.1  
RMSD between 216 pruned atom pairs is 1.385 angstroms; (across all 540 pairs:
3.371)  
  

> matchmaker #6 to #2/C pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain C (#2) with
test_642d3_unrelaxed_rank_003_alphafold2_multimer_v3_model_4_seed_001.pdb,
chain A (#6), sequence alignment score = 2667.4  
RMSD between 261 pruned atom pairs is 1.372 angstroms; (across all 542 pairs:
3.057)  
  

> matchmaker #7 to #2/D pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain D (#2) with
test_642d3_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#7), sequence alignment score = 2685.4  
RMSD between 306 pruned atom pairs is 1.260 angstroms; (across all 542 pairs:
2.534)  
  

> matchmaker #8 to #2/E pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain E (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2483.2  
RMSD between 228 pruned atom pairs is 1.318 angstroms; (across all 542 pairs:
3.669)  
  

> matchmaker #9 to #2/F pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain F (#2) with
test_642d3_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#9), sequence alignment score = 2679.1  
RMSD between 303 pruned atom pairs is 1.335 angstroms; (across all 542 pairs:
2.596)  
  

> show #2 models

> hide #2 models

> show #2 models

> hide #13 models

> hide #12 models

> hide #11 models

> hide #10 models

> hide #9 models

> hide #8 models

> hide #7 models

> hide #6 models

> hide #5 models

> show #5 models

> hide #4 models

> hide #2 models

> show #2 models

> color #2 #f6f5f4ff

> show #4 models

> hide #5 models

> show #5 models

> hide #4 models

> show #6 models

> hide #5 models

> color #6 #c061cbff

> show #7 models

> hide #6 models

> show #8 models

> hide #7 models

> show #9 models

> matchmaker #9 to #2/A pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain A (#2) with
test_642d3_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#9), sequence alignment score = 2681.8  
RMSD between 164 pruned atom pairs is 1.192 angstroms; (across all 542 pairs:
5.181)  
  

> matchmaker #10 to #2/B pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_007_alphafold2_multimer_v3_model_2_seed_001.pdb,
chain A (#10), sequence alignment score = 2656.5  
RMSD between 219 pruned atom pairs is 1.381 angstroms; (across all 540 pairs:
3.335)  
  

> matchmaker #11 to #2/C pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain C (#2) with
test_642d3_unrelaxed_rank_008_alphafold2_multimer_v3_model_3_seed_000.pdb,
chain A (#11), sequence alignment score = 2673.4  
RMSD between 287 pruned atom pairs is 1.319 angstroms; (across all 542 pairs:
2.821)  
  

> matchmaker #12 to #2/D pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain D (#2) with
test_642d3_unrelaxed_rank_009_alphafold2_multimer_v3_model_1_seed_000.pdb,
chain A (#12), sequence alignment score = 2682.4  
RMSD between 340 pruned atom pairs is 1.287 angstroms; (across all 542 pairs:
2.443)  
  

> matchmaker #13 to #2/E pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain E (#2) with
test_642d3_unrelaxed_rank_010_alphafold2_multimer_v3_model_1_seed_001.pdb,
chain A (#13), sequence alignment score = 2477.2  
RMSD between 236 pruned atom pairs is 1.326 angstroms; (across all 542 pairs:
3.521)  
  

> hide #8 models

> show #8 models

> hide #9 models

> show #9 models

> hide #9 models

> show #10 models

> show #11 models

> show #12 models

> show #13 models

> hide #12 models

> hide #11 models

> hide #10 models

> matchmaker #8 to #2/D pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain D (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2678.2  
RMSD between 329 pruned atom pairs is 1.293 angstroms; (across all 542 pairs:
2.501)  
  

> matchmaker #8 to #2/B pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain B (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2656.5  
RMSD between 214 pruned atom pairs is 1.423 angstroms; (across all 540 pairs:
3.482)  
  

> matchmaker #8 to #2/F pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain F (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2679.1  
RMSD between 287 pruned atom pairs is 1.235 angstroms; (across all 542 pairs:
2.581)  
  

> matchmaker #8 to #2/E pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Lon-LarA-max.pdb, chain E (#2) with
test_642d3_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_001.pdb,
chain A (#8), sequence alignment score = 2483.2  
RMSD between 228 pruned atom pairs is 1.318 angstroms; (across all 542 pairs:
3.669)  
  

> hide #8 models

> select add #13

6852 atoms, 6956 bonds, 888 residues, 1 model selected  

> color sel bychain

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/updateloop.py", line 84, in draw_new_frame  
view.draw(check_for_changes = False)  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/view.py", line 188, in draw  
self._draw_scene(camera, drawings)  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/view.py", line 226, in _draw_scene  
shadow, multishadow = self._compute_shadowmaps(opaque_drawings,
transparent_drawings, camera)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/view.py", line 623, in _compute_shadowmaps  
shadow_enabled = r.shadow.use_shadow_map(camera, shadow_drawings)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1482, in use_shadow_map  
shadow_map = self._finish_rendering_shadowmap() # Depth texture  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1512, in
_finish_rendering_shadowmap  
fb = r.pop_framebuffer()  
^^^^^^^^^^^^^^^^^^^  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 764, in pop_framebuffer  
fb.activate()  
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 2313, in activate  
GL.glDrawBuffer(self._draw_buffer)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  




OpenGL version: 3.3.0 NVIDIA 535.146.02
OpenGL renderer: NVIDIA GeForce RTX 4090/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:0
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7D67
OS: Ubuntu 23.10 Mantic Minotaur
Architecture: 64bit ELF
Virtual Machine: none
CPU: 32 AMD Ryzen 9 7950X 16-Core Processor
Cache Size: 1024 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           124Gi        24Gi        29Gi       438Mi        73Gi       100Gi
	Swap:            9Gi       3.5Mi         9Gi

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation AD102 [GeForce RTX 4090] [10de:2684] (rev a1)	
	Subsystem: NVIDIA Corporation AD102 [GeForce RTX 4090] [10de:16f3]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.13.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.12
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.22.2
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7rc202311220128
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.7rc1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.13
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MorphOT: 0.1
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NIHPresets: 1.1.17
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.3
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.2.1
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-QScore: 1.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.45.0
    funcparserlib: 2.0.0a0
    glfw: 2.6.3
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.5.0
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    mrcfile: 1.5.0
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.7
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 10.0.1
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.0.0
    progressbar2: 4.3.2
    prompt-toolkit: 3.0.41
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    python-utils: 3.8.1
    pytz: 2023.3.post1
    pyzmq: 25.1.1
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.3
    traitlets: 5.9.0
    typing-extensions: 4.8.0
    tzdata: 2023.3
    urllib3: 2.1.0
    wcwidth: 0.2.12
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

[Tom Goddard]

Error resetting to draw back buffer on to render to main window after computing opengl shadow maps. Seems like the OpenGL context for the main window was lost. Maybe switched user so ChimeraX no longer had permission on the console?