![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 23, 2023:
- 11:50 PM Ticket #9444 (MemoryError opening mmCIF) created by
- […]
- 12:37 PM Ticket #9443 (Graphics crash, macOS 11.7.7, Iris Plus Graphics 650) created by
- […]
- 11:05 AM Ticket #9442 (Crash deleting tool) created by
- […]
- 9:32 AM Ticket #9441 (MemoryError saving map in session) created by
- […]
- 3:11 AM Ticket #9440 (Add Charge failure) created by
- […]
- 3:11 AM Ticket #9439 (Add Charge failure) created by
- […]
- 3:11 AM Ticket #9438 (Add Charge failure) created by
- […]
- 1:06 AM Ticket #9437 (DICOM: bits_allocated is None) created by
- […]
- 12:39 AM Ticket #9436 (MemoryError opening mmCIF) created by
- […]
Jul 22, 2023:
- 8:04 PM Ticket #9435 (StarMap: 'NoneType' object has no attribute 'strip') created by
- […] wsl install.PNG
- 6:02 PM Ticket #9434 (glClear: invalid framebuffer operation) created by
- […]
- 11:33 AM Ticket #9433 (Crash showing Rapid Access at startup) created by
- […]
- 6:27 AM Ticket #9432 (Crash during garbage collection) created by
- […]
Jul 21, 2023:
- 6:16 PM Dev2023-7-24 edited by
- (diff)
- 6:00 PM Ticket #9431 (Restoring VR session on Mac ARM fails) closed by
- fixed: Fixed. The problem is the pyopenvr PyPi package ChimeraX uses to talk …
- 5:45 PM Ticket #9431 (Restoring VR session on Mac ARM fails) created by
- […]
- 5:35 PM Ticket #9430 (Save VTK data in sessions) closed by
- fixed: Fixed. The VTK file reader did not mark the VTK models to have their …
- 5:30 PM Ticket #9430 (Save VTK data in sessions) created by
- […]
- 3:25 PM Ticket #9429 (BlastProtein failed: 'bytes' object has no attribute 'items') created by
- […]
- 2:16 PM Ticket #9428 (Alphafold2 collab notebook error message) closed by
- can't reproduce: I've seen this error before and it is a bug in Google Colab, but some …
- 1:59 PM Ticket #9426 (glClear: invalid framebuffer operation) closed by
- nonchimerax: External monitor Qt problem. Please don't continue reporting this as …
- 1:28 PM Ticket #9428 (Alphafold2 collab notebook error message) created by
- […] [[Image(...)]]
- 1:21 PM Ticket #9425 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Songzhe, Thanks for reporting this problem. We find it happens …
- 1:17 PM 2023-7-20 edited by
- (diff)
- 12:49 PM Ticket #9427 (Allow setting directory to save images with snapshot toolbar button) closed by
- fixed: Done. I added a snapshot command. It does the same things as …
- 12:47 PM Ticket #9420 (Showing single plane of .nii file gives traceback) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/6a0b07004cb62374c25022d5645e80 …
- 12:42 PM Ticket #9427 (Allow setting directory to save images with snapshot toolbar button) created by
- […]
- 11:55 AM Ticket #9426 (glClear: invalid framebuffer operation) created by
- […]
- 10:51 AM Ticket #9423 ("swapaa interactive" for non-rotamer res type produces traceback) closed by
- fixed
- 10:28 AM Ticket #9425 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 9:00 AM Ticket #9422 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 12:58 AM Ticket #9424 (Crash saving session) created by
- […]
- 12:21 AM Ticket #9423 ("swapaa interactive" for non-rotamer res type produces traceback) created by
- […]
Jul 20, 2023:
- 11:27 PM Ticket #9422 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:41 PM Ticket #9418 (ISOLDE: various simulation-related problems) closed by
- duplicate
- 5:40 PM Ticket #9417 (ISOLDE: various simulation-related problems) closed by
- duplicate
- 5:27 PM Ticket #9421 (Should we update to Qt 6.5 which requires macOS 11?) created by
- […]
- 4:26 PM Ticket #9420 (Showing single plane of .nii file gives traceback) created by
- […]
- 4:11 PM Ticket #9394 (using Segmentations tool to create a segmentation and then saving ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/a3d3e5db24fa62d689ca38030d09d2 …
- 4:06 PM Ticket #9395 (clicking "Remove" on Segmentations tool to remove the existing ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/0da22ae1d412a456a9ce9e15d3c184 …
- 4:05 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/176154b00cfa4f61318185787d9919 …
- 3:53 PM Ticket #9419 (SEG models opened from files should appear in Segmentation menu) created by
- 2:46 PM Ticket #9418 (ISOLDE: various simulation-related problems) created by
- […]
- 2:16 PM Ticket #9417 (ISOLDE: various simulation-related problems) created by
- […]
- 2:03 PM NIAID2023 edited by
- (diff)
- 2:01 PM NIAID2023 edited by
- (diff)
- 1:54 PM NIAID2023 edited by
- (diff)
- 1:49 PM Ticket #9416 (ISOLDE: various simulation-related problems) created by
- […]
- 1:26 PM NIAID2023 edited by
- (diff)
- 12:45 PM Ticket #9415 (Trouble with a daily build installing a plugin) closed by
- duplicate: Hi Barry, The way plugins get installed in the daily build changed …
- 11:00 AM Ticket #9409 (Crash handling QTimer callback) closed by
- duplicate: Duplicate of #9414
- 10:47 AM Ticket #9412 (No numpy.bool) closed by
- fixed: Fixed a few days ago. One or two daily builds had this bug after …
- 10:47 AM Ticket #9413 (Destroy tool status bar: wrapped C/C++ object of type QScreen has been ...) closed by
- duplicate: Hi Barbara, Thanks for reporting this problem. I'm pretty sure it's …
- 10:33 AM Ticket #9411 (Crash showing save dialog on Linux) closed by
- can't reproduce
- 9:47 AM Ticket #9415 (Trouble with a daily build installing a plugin) created by
- […]
- 8:20 AM Ticket #9414 (Crash emitting color_pause signal) created by
- […]
- 7:02 AM Ticket #9413 (Destroy tool status bar: wrapped C/C++ object of type QScreen has been ...) created by
- […]
- 6:50 AM Ticket #9412 (No numpy.bool) created by
- […]
- 5:52 AM Ticket #9411 (Crash showing save dialog on Linux) created by
- […]
Jul 19, 2023:
- 8:07 PM Ticket #9388 (Blank HTML widgets in daily build) closed by
- fixed: Fixed. Added Apple notarization entitlement …
- 3:20 PM Ticket #9405 (Allow reading and writing 16-bit float MRC files) closed by
- fixed: Done. In ChimeraX daily builds dated July 19, 2023 and later. …
- 2:33 PM Ticket #9410 (mmCIF writing vs. blank chain IDs) created by
- […]
- 1:24 PM Ticket #9409 (Crash handling QTimer callback) created by
- […]
- 1:20 PM Ticket #9408 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: The ChimeraX error is because you have a defective graphics driver. …
- 1:08 PM Ticket #9408 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 1:00 PM Ticket #9407 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Looks like a defective OpenGL driver.
- 12:21 PM Ticket #9407 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 11:33 AM Ticket #9406 (SEQCROW during session restore: local variable 'model' referenced ...) created by
- […]
- 10:46 AM Ticket #9400 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:40 AM Ticket #9405 (Allow reading and writing 16-bit float MRC files) created by
- From: Ricardo Righetto via ChimeraX-users …
- 10:14 AM Ticket #9404 ('center' arg when opening small molecules) created by
- […]
- 9:26 AM Ticket #9401 (Windows fatal exception: access violation) closed by
- can't reproduce
- 9:14 AM Ticket #9399 (No space left on device) closed by
- duplicate
- 9:12 AM Ticket #9393 (UnicodeDecodeError opening PDB file) closed by
- duplicate
- 7:57 AM Ticket #9403 (Crash opening mmCIF file) created by
- […]
- 7:44 AM Ticket #9402 (Crash opening mmCIF file) created by
- […]
- 5:47 AM Ticket #9401 (Windows fatal exception: access violation) created by
- […]
Jul 18, 2023:
- 7:08 PM Ticket #9400 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:47 PM Ticket #9399 (No space left on device) created by
- […]
- 6:28 PM WikiStart edited by
- (diff)
- 4:57 PM Ticket #9292 (wrapped C/C++ object of type ChainListWidget has been deleted) closed by
- fixed: Fix: …
- 3:19 PM Ticket #9392 (No Report a Bug button with Qt 6.5.1 on Mac) closed by
- fixed: Fixed. Forced use of non-native QErrorMessage dialog on Mac.
- 2:41 PM Ticket #9398 (issues opening 4D heart ultrasound data from Rubinstein) created by
- […]
- 2:33 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) created by
- SEG models should be suppressed from the Segmentations dialog "Models" …
- 2:28 PM Ticket #9396 (Automatically set volume step to 1 on newly opened segmentations) created by
- Most of the time, click-drag with segmentation cursor in slice view …
- 2:23 PM Ticket #9395 (clicking "Remove" on Segmentations tool to remove the existing ...) created by
- […]
- 2:22 PM Ticket #9394 (using Segmentations tool to create a segmentation and then saving ...) created by
- […]
- 1:34 PM Ticket #9393 (UnicodeDecodeError opening PDB file) created by
- […]
- 12:21 PM Dev2023-7-24 created by
- 12:20 PM 2023-7-20 created by
- 12:19 PM DeveloperMeetings edited by
- (diff)
- 11:29 AM Ticket #9391 (ImportError: cannot import name 'float' from 'numpy') closed by
- fixed: Fixed. Found 4 places in code: fit in map, cage builder, measure …
- 11:22 AM Ticket #9392 (No Report a Bug button with Qt 6.5.1 on Mac) created by
- […]
- 11:22 AM Ticket #9391 (ImportError: cannot import name 'float' from 'numpy') created by
- […]
- 11:10 AM Ticket #9390 (Qt WebEngine initialized in nogui offscreen mode) created by
- While Qt needs to be initialized in nogui offscreen mode to be able to …
- 9:32 AM Ticket #9389 (H add to O5') created by
- […]
- 9:31 AM Ticket #9385 (Crash in event loop) closed by
- can't reproduce
- 9:27 AM Ticket #9388 (Blank HTML widgets in daily build) created by
- […] Screen Shot 2023-07-18 at 9.26.49 AM.png
- 7:00 AM Ticket #9387 (ESPALOMA-based parameter estimation) created by
- […] v7n_from_chimerax_mol2.png
Jul 17, 2023:
- 5:37 PM Ticket #9386 (ImportError: cannot import name 'bool' from 'numpy') closed by
- fixed: Fixed. Updated to numpy 1.25 today and it no longer has numpy.bool. …
- 5:30 PM Ticket #9386 (ImportError: cannot import name 'bool' from 'numpy') created by
- […]
- 4:08 PM Dev2023-7-17 edited by
- (diff)
- 3:38 PM Ticket #9385 (Crash in event loop) created by
- […]
- 1:48 PM Ticket #9379 (ViewDockX data not in session) closed by
- fixed: Hi Sabrina, With further investigation I have determined that this is …
- 12:03 PM Ticket #9383 (~surf vs. surface model display) closed by
- not a bug: This is how it works in Chimera and has always worked in ChimeraX. I …
- 11:46 AM Ticket #9384 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:31 AM Ticket #9381 (Failed reading bytes from IMOD file) closed by
- can't reproduce: File might be truncated, or the file contains unexpected data. No way …
- 11:31 AM Ticket #9382 (color by attr: '<' not supported between instances of 'NoneType' and ...) closed by
- fixed
- 5:24 AM Ticket #9384 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:10 AM Ticket #9383 (~surf vs. surface model display) created by
- […]
- 4:27 AM Ticket #9382 (color by attr: '<' not supported between instances of 'NoneType' and ...) created by
- […]
Jul 15, 2023:
- 12:55 PM Ticket #9373 (Attempt to update StarMap from Toolshed: Cannot allocate memory) closed by
- limitation: Fix will be in 1.7.
- 7:42 AM Ticket #9381 (Failed reading bytes from IMOD file) created by
- […]
- 5:38 AM Ticket #9380 (StarMap: 'NoneType' object has no attribute 'strip') created by
- […]
- 2:19 AM Ticket #9379 (ViewDockX data not in session) created by
- […] 3r2u_dockview_n_activesite.cxs
Jul 14, 2023:
- 12:45 PM Ticket #9325 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Reproduced in #9378
- 12:27 PM Ticket #9378 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:33 AM Ticket #9357 (Coloring AlphaFold PAE domains: IndexError: index 907 is out of bounds ...) closed by
- fixed: Fixed. Added a clear error message that PAE domains cannot be colored …
- 11:31 AM Ticket #9374 (glClear: invalid framebuffer operation) closed by
- nonchimerax: Same error reported by same user 4 times now #9334, #9342, #9355. As …
- 11:22 AM Ticket #9377 (User's file systems suddenly became read-only) closed by
- nonchimerax
- 11:19 AM Ticket #9367 (Closing one of the orthoplane views and reopening them makes the GUI slow) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/b6b729b23edd30783bf76f3515625b …
- 11:14 AM Ticket #9376 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 11:10 AM Ticket #9375 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 11:05 AM Ticket #9372 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- duplicate
- 10:31 AM Ticket #9377 (User's file systems suddenly became read-only) created by
- […]
- 8:05 AM Ticket #9376 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:39 AM Ticket #9375 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 5:22 AM Ticket #9374 (glClear: invalid framebuffer operation) created by
- […]
- 1:15 AM Ticket #9373 (Attempt to update StarMap from Toolshed: Cannot allocate memory) created by
- […]
Jul 13, 2023:
- 8:20 PM Ticket #9372 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) created by
- […]
- 5:10 PM Ticket #9136 (Can't login to Trac from Chrome on Windows) closed by
- fixed: So the problem is that your account expired. The bug is that you …
- 3:45 PM Ticket #9371 (Option for "combine" to combine chains) created by
- Though chains may be already be combined by forming the appropriate …
- 3:39 PM 2023-7-13 edited by
- (diff)
- 3:37 PM 2023-7-13 edited by
- (diff)
- 3:35 PM Ticket #9370 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 3:34 PM Ticket #9369 (Crash showing save dialog) closed by
- can't reproduce
- 3:30 PM 2023-7-13 edited by
- (diff)
- 3:30 PM 2023-7-13 edited by
- (diff)
- 3:27 PM Ticket #9368 (Crash converting to Hybrid-36) closed by
- can't reproduce
- 3:23 PM Ticket #9366 (QOpenGLContext::makeCurrent() called with non-opengl surface) closed by
- nonchimerax: The Qt window toolkit used by ChimeraX is not functioning probably …
- 3:15 PM Ticket #9365 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 12:06 AM Ticket #9370 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jul 12, 2023:
- 11:36 PM Ticket #9369 (Crash showing save dialog) created by
- […]
- 8:39 PM Ticket #9368 (Crash converting to Hybrid-36) created by
- […]
- 5:23 PM Ticket #9367 (Closing one of the orthoplane views and reopening them makes the GUI slow) created by
- 3:13 PM Ticket #9346 (DICOM segmentations: glError regarding glGetIntegerv when segmenting ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/e9204c03461f560a9c02daa89b970c …
- 3:01 PM Ticket #9359 (ChimeraX bug report submission) closed by
- fixed
- 2:29 PM Ticket #9366 (QOpenGLContext::makeCurrent() called with non-opengl surface) created by
- […] ChimeraX.png
- 12:15 PM Ticket #9365 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 12:03 PM Ticket #9356 (Altloc Explorer: 'AltlocExplorerTool' object has no attribute 'all_layout') closed by
- fixed: In tomorrow's build
- 11:22 AM Ticket #9358 (QDial now requires int, not float) closed by
- fixed: Hi, Thanks for reporting this problem. I have committed a fix and it …
- 10:46 AM Ticket #9364 (Crashed in QTabBar::paintEvent()) created by
- […]
- 10:34 AM Ticket #9363 (Graphics crash, macOS 13.4.1, Radeon Pro Vega 64) closed by
- nonchimerax: Apple AMD graphics driver crash. Unfortunately Apple AMD and Intel …
- 10:29 AM Ticket #9348 (ISOLDE: 'NoneType' object has no attribute 'sim_construct') closed by
- fixed: Tristan can't log into Trac (#9136), so closing this on his behalf.
- 10:24 AM Ticket #9362 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 9:48 AM Ticket #9355 (glClear: invalid framebuffer operation) closed by
- duplicate: Same error, same reporter as #9342. Dual display Mac Qt window …
- 9:42 AM Ticket #9361 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 9:40 AM Ticket #9360 (Crash in event loop) closed by
- can't reproduce
- 8:20 AM Ticket #9363 (Graphics crash, macOS 13.4.1, Radeon Pro Vega 64) created by
- […]
- 7:48 AM Ticket #9362 (Crash showing Rapid Access at startup) created by
- […]
- 5:11 AM Ticket #9361 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:01 AM Ticket #9360 (Crash in event loop) created by
- […]
- 12:27 AM Ticket #9359 (ChimeraX bug report submission) created by
- […]
Jul 11, 2023:
- 5:23 PM Ticket #9358 (QDial now requires int, not float) created by
- […] 1by4_Na_1.pdb
- 2:20 PM Ticket #9357 (Coloring AlphaFold PAE domains: IndexError: index 907 is out of bounds ...) created by
- […]
- 1:12 PM Ticket #6762 (matchmaker showAlignment tries to calculate CA RMSD header for nucleic ...) closed by
- fixed: Nucleic alignments now use C4' instead of C-alpha for RMSD header.
- 1:07 PM Ticket #9356 (Altloc Explorer: 'AltlocExplorerTool' object has no attribute 'all_layout') created by
- […]
- 12:37 PM Ticket #9355 (glClear: invalid framebuffer operation) created by
- […]
- 11:42 AM Ticket #9354 (Crash processing QTimer) closed by
- can't reproduce
- 11:39 AM Ticket #9352 (Matchmaker failure) closed by
- not a bug: Hi Johannes, If you need to get MatchMaker to basically ignore the …
- 11:26 AM Ticket #9354 (Crash processing QTimer) created by
- […]
- 10:29 AM Ticket #9353 (PICKLUSTER: Attempted to add model Atomic interactions interface #2 to ...) created by
- […]
- 9:26 AM Ticket #9351 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:19 AM Ticket #9347 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:49 AM Dev2023-7-17 created by
- 8:48 AM 2023-7-13 created by
- 8:47 AM DeveloperMeetings edited by
- (diff)
- 8:21 AM Ticket #9352 (Matchmaker failure) created by
- […]
- 8:08 AM Ticket #9351 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:03 AM Ticket #9350 (Clipper/ISOLDE version conflict) created by
- […]
- 6:48 AM Ticket #9349 (Open XYZ: list index out of range) created by
- […]
- 1:45 AM Ticket #9348 (ISOLDE: 'NoneType' object has no attribute 'sim_construct') created by
- […]
Jul 10, 2023:
- 9:32 PM Ticket #9347 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:40 PM Ticket #9346 (DICOM segmentations: glError regarding glGetIntegerv when segmenting ...) created by
- No idea why, works on macOS, but after we create the first 2D …
- 4:38 PM Dev2023-7-10 edited by
- (diff)
- 4:21 PM Dev2023-7-10 edited by
- (diff)
- 3:19 PM Dev2023-7-10 edited by
- (diff)
- 3:07 PM Dev2023-7-10 edited by
- (diff)
- 3:05 PM Dev2023-7-10 edited by
- (diff)
- 3:00 PM Dev2023-7-10 edited by
- (diff)
- 3:00 PM Dev2023-7-10 created by
- 2:59 PM DeveloperMeetings edited by
- (diff)
- 2:59 PM DeveloperMeetings edited by
- (diff)
- 2:58 PM Ticket #9345 (Diagnostic messages on startup on Mac) closed by
- fixed: I …
- 2:18 PM Ticket #9328 (Histogram widget: operands could not be broadcast together with shapes) closed by
- fixed: Fix: …
- 12:36 PM Ticket #9345 (Diagnostic messages on startup on Mac) created by
- […]
- 12:04 PM Ticket #9344 (Wide data throws off orthoplane views) created by
- A CT scan that is much wider than it is tall displays properly on the …
- 10:40 AM Ticket #9341 (Many OpenGL-related errors) closed by
- nonchimerax: These ChimeraX errors on startup mean your Windows graphics driver is …
- 10:35 AM Ticket #9342 (glClear: invalid framebuffer operation) closed by
- nonchimerax: Same bug from same reporter as #9334. The warning at startup says …
- 10:29 AM Ticket #9339 (Cannot allocate memory to encode movie) closed by
- nonchimerax: Linux gave a memory allocation error trying to fork ffmpeg to encode a …
- 10:26 AM Ticket #9334 (glClear: invalid framebuffer operation) closed by
- nonchimerax: These OpenGL graphics errors are either a problem in the Qt window …
- 10:14 AM Ticket #9343 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Linux
- 10:01 AM Ticket #9338 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.2.5
- 9:57 AM Ticket #9337 (PY_SSIZE_T_CLEAN macro must be defined for '#' formats) closed by
- duplicate: Hi Ulrich, Thanks for reporting this problem. It was fixed about …
- 9:38 AM Ticket #9336 (Cannot show side view / no toolbar) closed by
- duplicate: Same mail delivery problems as with the other tickets
- 9:32 AM Ticket #9333 (Web service failure) closed by
- not a bug: Trying to use old Opal services
- 9:25 AM Ticket #9330 (Cannot show side view) closed by
- duplicate: Duplicate of #9331
- 6:01 AM Ticket #9343 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:51 AM Ticket #9342 (glClear: invalid framebuffer operation) created by
- […]
- 4:21 AM Ticket #9341 (Many OpenGL-related errors) created by
- […] Chimera-X.PNG
- 12:41 AM Ticket #9340 (Unknown crash) created by
- […]
Jul 9, 2023:
- 11:37 PM Ticket #9339 (Cannot allocate memory to encode movie) created by
- […]
- 9:01 PM Ticket #9338 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 4:31 PM Ticket #9327 (unitcell issues) closed by
- fixed: Fixed in July 9, 2023 daily build. The unit cell tool looked for …
- 8:53 AM Ticket #9337 (PY_SSIZE_T_CLEAN macro must be defined for '#' formats) created by
- […]
- 8:48 AM Ticket #9336 (Cannot show side view / no toolbar) created by
- […]
Jul 8, 2023:
- 10:53 PM Ticket #9335 (MemoryError opening mmCIF) created by
- […]
- 9:19 AM Ticket #9334 (glClear: invalid framebuffer operation) created by
- […]
- 2:44 AM Ticket #9333 (Web service failure) created by
- […]
Jul 7, 2023:
- 4:17 PM Ticket #9322 (Download DICOM: NameError: name 'api_call_headers' is not defined) closed by
- fixed: Should be fixed tomorrow. I updated tcia_utils to 1.5.1
- 3:21 PM Ticket #9243 (Bundles not installing) closed by
- fixed: Should be working tomorrow, closing because the other ticket was opened.
- 3:19 PM Ticket #9332 (Support multimask segmentations) created by
- As reported by Selina, SEG models in NSCLC-Radiomics-Interobserver1 …
- 3:19 PM Ticket #9191 ('devel install' going into system Python) closed by
- fixed: Should be fixed in tomorrow's build.
- 12:26 PM Ticket #9323 (OpenGL texture was not deleted before graphics.Texture destroyed) closed by
- nonchimerax: This is an OpenGL error in glTexImage3D trying to make a very large 2 …
- 12:18 PM Ticket #9325 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) reopened by
- There is an identical crash that gives the same stack trace in the Qt …
- 11:58 AM Ticket #9329 (Crash in event loop) closed by
- can't reproduce
- 11:51 AM Ticket #9326 (Crash drawing QTabBar) closed by
- can't reproduce: Mac, single display
- 11:48 AM Ticket #9325 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:05 AM Ticket #9331 (Cannot show side view / no toolbar) created by
- […]
- 11:04 AM Ticket #9330 (Cannot show side view) created by
- […]
- 8:18 AM Ticket #9329 (Crash in event loop) created by
- […]
- 6:48 AM Ticket #9328 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 4:55 AM Ticket #9327 (unitcell issues) created by
- […]
- 3:37 AM Ticket #9326 (Crash drawing QTabBar) created by
- […]
- 2:32 AM Ticket #9325 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:28 AM Ticket #9324 (Crash opening session) created by
- […]
- 12:08 AM Ticket #9323 (OpenGL texture was not deleted before graphics.Texture destroyed) created by
- […]
Jul 6, 2023:
- 4:12 PM 2023-7-6 edited by
- (diff)
- 3:30 PM Ticket #9322 (Download DICOM: NameError: name 'api_call_headers' is not defined) created by
- […]
- 3:26 PM Ticket #9315 (DICOM: no guardrails on Segmentation cursor size?) closed by
- fixed: This has actually been fixed since yesterday's daily build! Unless …
- 3:15 PM Ticket #9321 (DICOM: restore_snapshot for {Volume,VolumeImage} returned None) created by
- The DICOM bundle never actually returns grids to ChimeraX's various …
- 3:08 PM Ticket #9311 (Cannot save Patient class in session) closed by
- fixed: Should be fixed in tomorrow's daily build.
- 2:55 PM Ticket #9320 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 2:53 PM Ticket #9319 (Toolbar and windows alignment) closed by
- not a bug: Hi Loc, I'm not sure how you managed to do this without realizing it, …
- 2:38 PM Ticket #9318 (Crash creating QWebEngineProfile) closed by
- can't reproduce: 1.2.5
- 2:36 PM Ticket #9317 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 2:34 PM Ticket #9316 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 2:29 PM Ticket #9312 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 2:10 PM NIAID2023 edited by
- (diff)
- 1:56 PM NIAID2023 edited by
- (diff)
- 1:48 PM NIAID2023 edited by
- (diff)
- 12:54 PM Ticket #9309 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 12:52 PM Ticket #9308 (Opening AlphaFold JSON as MOLE) closed by
- duplicate
- 12:24 PM Ticket #9304 (Graphics crash, macOS 11.4, Radeon Pro 580) closed by
- nonchimerax: Apple AMD graphics driver crash.
- 11:00 AM Ticket #9307 (Crash parsing atom spec) closed by
- duplicate
- 10:59 AM Ticket #9306 ("Set" no longer directly in collections module) closed by
- duplicate
- 10:57 AM Ticket #9305 (Crash in event loop) closed by
- can't reproduce
- 10:51 AM Ticket #9300 (Attribute assignment problem) closed by
- not a bug: Hi Martha, The value you are assigning to residue 348 is just ".", …
- 10:40 AM Ticket #9299 (Crash in _cleanup) closed by
- duplicate: We no longer use _cleanup
- 10:38 AM Ticket #9298 (Crash querying unknown window frame margins) closed by
- can't reproduce
- 10:29 AM Ticket #9320 (Crash showing Rapid Access at startup) created by
- […]
- 9:53 AM Ticket #9319 (Toolbar and windows alignment) created by
- […] [[Image(...)]] …
- 8:47 AM Ticket #9318 (Crash creating QWebEngineProfile) created by
- […]
- 3:57 AM Ticket #9317 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:10 AM Ticket #9316 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jul 5, 2023:
- 6:52 PM Ticket #9315 (DICOM: no guardrails on Segmentation cursor size?) created by
- […]
- 2:19 PM Ticket #9302 (clicking Add on the Segmentations dialog for medical images gave traceback) closed by
- fixed: That seems to have solved it.
- 1:01 PM Ticket #9314 (ISOLDE: No template for residue type) created by
- […]
- 12:43 PM Ticket #9294 (Version info out of date) closed by
- fixed: The bug was using the date the author made the commit instead of the …
- 12:05 PM Ticket #9313 (Automatically color bypolymer when large structure opened) closed by
- fixed
- 12:00 PM Ticket #9313 (Automatically color bypolymer when large structure opened) created by
- […]
- 11:16 AM Ticket #9312 (Crash showing Rapid Access at startup) created by
- […]
- 10:46 AM Ticket #9303 (in DICOM slice views, honor zoom and translation mousemodes) closed by
- duplicate: Continuing in #9147
- 10:43 AM Dev2023-7-9 created by
- 10:42 AM 2023-7-6 created by
- 10:40 AM DeveloperMeetings edited by
- (diff)
- 10:40 AM Ticket #9301 (DICOM: starting Segmentations tool without medical image data open ...) closed by
- fixed: These tracebacks should be solved by …
- 9:52 AM Ticket #9311 (Cannot save Patient class in session) created by
- […]
- 7:08 AM Ticket #9310 (Chain type wrong when edited structure reopened) created by
- […] Description I saved the attached mmCIF after doing some …
- 7:00 AM Ticket #9309 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:30 AM Ticket #9308 (Opening AlphaFold JSON as MOLE) created by
- […]
- 2:35 AM Ticket #9307 (Crash parsing atom spec) created by
- […]
- 1:39 AM Ticket #9306 ("Set" no longer directly in collections module) created by
- […]
- 1:18 AM Ticket #9305 (Crash in event loop) created by
- […]
- 12:32 AM Ticket #9304 (Graphics crash, macOS 11.4, Radeon Pro 580) created by
- […]
Jul 4, 2023:
- 9:00 AM Ticket #9303 (in DICOM slice views, honor zoom and translation mousemodes) created by
- ... unless they are assigned to left-mouse which I assume is reserved …
- 8:51 AM Ticket #9302 (clicking Add on the Segmentations dialog for medical images gave traceback) created by
- […]
- 8:09 AM Ticket #9301 (DICOM: starting Segmentations tool without medical image data open ...) created by
- […]
- 6:16 AM Ticket #9300 (Attribute assignment problem) created by
- […] XIAP_afbenign.defattr
- 2:57 AM Ticket #9299 (Crash in _cleanup) created by
- […]
- 12:00 AM Ticket #9298 (Crash querying unknown window frame margins) created by
- […]
Jul 3, 2023:
- 5:26 PM Ticket #9296 (Crash registering webcam command) closed by
- can't reproduce: 1.2.5
- 5:01 PM Ticket #9297 (ISOLDE: graph: edges should be a n x 2 array of unsigned ints) created by
- […]
- 4:17 PM Dev2023-7-3 edited by
- (diff)
- 3:34 PM Ticket #9296 (Crash registering webcam command) created by
- […]
- 3:12 PM Dev2023-7-3 edited by
- (diff)
- 12:39 PM Ticket #9295 (Linux nightly build broken, libxkbfile.so.1: cannot open shared object file) created by
- I guess the Linux build machine (singularity image?) changed. So the …
- 12:25 PM Ticket #9294 (Version info out of date) created by
- Elaine: I am using features that are clearly brand new, like Zach's …
- 11:45 AM Ticket #9283 (NaN im map data) closed by
- nonchimerax: I believe this ChimeraX error means one of the data files you opened …
- 11:36 AM Ticket #9282 (OpenGL out of memory error) closed by
- nonchimerax: The OpenGL error code 1285 is out of memory and the buffer being …
- 11:03 AM Ticket #9291 (Crash in event loop) closed by
- can't reproduce: Linux
- 11:02 AM Ticket #9290 (Crash opening PDB file) closed by
- can't reproduce
- 11:01 AM Ticket #9289 (Show backbone atoms) closed by
- not a bug: Hi Amsyar, By default showing a cartoon/ribbon will suppress the …
- 10:52 AM Ticket #9288 (Restore new session in old ChimeraX) closed by
- limitation
- 10:51 AM Ticket #9287 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac, not dual display when reported
- 10:49 AM Ticket #9286 (Crash painting QTabBar) closed by
- can't reproduce: Mac dual display Report didn't include log from crash, so don't know …
- 10:25 AM Ticket #9281 (Issue in Atom Structure color retrieval) closed by
- not a bug: Hi Ivan, Models don't really have a "color" attribute per se. Their …
- 3:55 AM Ticket #9293 (MemoryError opening mmCIF) created by
- […]
- 12:38 AM Ticket #9292 (wrapped C/C++ object of type ChainListWidget has been deleted) created by
- […]
Jul 2, 2023:
- 8:34 PM Ticket #9291 (Crash in event loop) created by
- […]
- 7:35 PM Ticket #9290 (Crash opening PDB file) created by
- […]
- 7:20 PM Ticket #9289 (Show backbone atoms) created by
- […] 3vus E. coli PgaB.pdb
- 6:46 PM Ticket #9288 (Restore new session in old ChimeraX) created by
- […]
- 4:54 PM Ticket #9287 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jul 1, 2023:
- 11:36 PM Ticket #9286 (Crash painting QTabBar) created by
- […]
- 1:20 PM Ticket #9285 (MemoryError opening mmCIF) created by
- […]
Jun 30, 2023:
- 10:59 PM Ticket #9284 (AssertionError parsing toolshed command) created by
- […]
- 9:01 PM Ticket #9283 (NaN im map data) created by
- […]
- 7:55 PM Ticket #9282 (OpenGL out of memory error) created by
- […]
- 1:16 PM Ticket #9281 (Issue in Atom Structure color retrieval) created by
- […] color issue.png
- 9:33 AM Ticket #9280 (Crash handling event) closed by
- can't reproduce
- 9:30 AM Ticket #9279 (No space left on device) closed by
- nonchimerax: Hi Faye, You have run out of free space on your F: drive. You need …
- 9:25 AM Ticket #9280 (Crash handling event) created by
- […]
- 9:18 AM Ticket #9279 (No space left on device) created by
- […]
- 8:44 AM Ticket #9277 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax
- 5:27 AM Ticket #9278 (toolshed plugin upload - disk quota exeeded) created by
- […] Screenshot 2023-06-30 135637.png
- 4:06 AM Ticket #9277 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Jun 29, 2023:
- 7:21 PM 2023-6-29 edited by
- (diff)
- 7:11 PM Ticket #9270 (300 dpi) closed by
- not a bug: This mailing list discussion talks about how to save an image to get a …
- 6:44 PM Ticket #9276 (Add maxPae option to alphafold contacts command) closed by
- fixed: Done. By default there is no maxPae value and all the contacts within …
- 6:43 PM Ticket #9276 (Add maxPae option to alphafold contacts command) created by
- […]
- 6:27 PM Ticket #9275 (Alphafold contacts command using default range 0-1) closed by
- fixed: Fixed. Now uses default range 0-30.
- 6:25 PM Ticket #9275 (Alphafold contacts command using default range 0-1) created by
- […]
- 4:34 PM Ticket #9271 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 3:35 PM Ticket #9274 (Seg brush modes) created by
- We have a simple paintbrush for drawing segmentations, it would be …
- 3:30 PM Ticket #9273 (module 'collections' has no attribute 'Set') created by
- […]
- 10:58 AM 2023-6-29 edited by
- (diff)
- 10:55 AM Ticket #9272 (Bundles not installing) created by
- […]
- 8:51 AM Ticket #9269 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Probable graphics driver problem
- 6:42 AM Ticket #9271 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:08 AM Ticket #9270 (300 dpi) created by
- […]
- 1:00 AM Ticket #9269 (Crash showing Rapid Access at startup) created by
- […]
Jun 28, 2023:
- 11:42 PM Ticket #9268 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:05 PM Ticket #9263 (Labels truncated) closed by
- fixed: Fixed. I worked around this Qt 6.4 bug by adding 4 pixels to the …
- 1:38 PM Ticket #9267 (make build-from-scratch fails on Linux) created by
- Build fails on Ubuntu 22.04 trying right at the start doing distclean. …
- 11:59 AM Ticket #9265 (AlphaFold: Error running shell script install_openmm.sh) closed by
- fixed: Fixed. No need to update ChimeraX -- the fix is in the Colab …
- 9:38 AM Ticket #9266 (Crash in event loop) closed by
- can't reproduce
- 9:31 AM Ticket #9266 (Crash in event loop) created by
- […]
- 9:23 AM Ticket #9265 (AlphaFold: Error running shell script install_openmm.sh) created by
- […]
- 9:14 AM Ticket #9264 (MemoryError open mmCIF) created by
- […]
- 2:25 AM Ticket #9259 (Problems with starting 1.6.1 version on Ubuntu 22.04 LTS) closed by
- limitation: Wonderful! Glad to hear that it is working. Thank you for letting us …
- 1:59 AM Ticket #9263 (Labels truncated) created by
- […] Screenshot from 2023-06-28 09-53-13.png
Jun 27, 2023:
- 10:15 PM Ticket #9262 (Crash in event loop) created by
- […]
- 1:20 PM Ticket #9261 (Crash in event loop) closed by
- can't reproduce: This ChimeraX crash was in the Qt window toolkit event loop, not in …
- 11:45 AM Ticket #8946 (KeyError: 'patients') closed by
- fixed: I think this has been fixed in more recent daily builds. I wrapped the …
- 11:18 AM Ticket #9261 (Crash in event loop) created by
- […]
- 11:14 AM Ticket #9151 (KeyError handling AlphaFold predict Blast results) closed by
- duplicate: This has been fixed in 1.6(and by extension 1.6.1)
- 11:07 AM Dev2023-7-3 created by
- 11:06 AM 2023-6-29 created by
- 11:05 AM DeveloperMeetings edited by
- (diff)
- 6:46 AM Ticket #9260 (Drawing hung?) created by
- […]
- 3:51 AM Ticket #9259 (Problems with starting 1.6.1 version on Ubuntu 22.04 LTS) created by
- […]
Jun 26, 2023:
- 5:14 PM Ticket #9258 (Combine sessions) created by
- The idea would be that if a flag is given to the open command …
- 3:49 PM Dev2023-6-26 edited by
- (diff)
- 12:16 PM Ticket #9254 (Modeller failure) closed by
- not a bug: Hi Maria, The web services architecture that ChimeraX uses has …
- 12:09 PM Ticket #9257 ("toolshed uninstall" w/o bundle name → traceback) created by
- […]
- 11:55 AM Ticket #9256 (saving NMR ensemble pdb with [NAME] only saves last structure) created by
- saving NMR ensemble pdb with [NAME] only saves last structure …
- 11:34 AM Ticket #9252 (Crash in event loop) closed by
- can't reproduce
- 11:17 AM Ticket #9248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:15 AM Ticket #9247 (Failed to create NSOpenGLContext) closed by
- limitation: Weird, but okay.
- 10:59 AM Ticket #9246 (Item table column sorting: 'QCxTableModel' object has no attribute ...) closed by
- duplicate: Fixed on 3/9/23
- 10:46 AM Ticket #9245 (Crash in chain.existing_residues) closed by
- can't reproduce: Possibly already fixed; would definitely need the PDB file to reproduce.
- 10:26 AM Ticket #9255 (Installing bundle nukes Tools menu) created by
- […]
- 9:33 AM Ticket #9254 (Modeller failure) created by
- […]
- 1:11 AM Ticket #9253 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jun 25, 2023:
- 11:40 PM Ticket #9252 (Crash in event loop) created by
- […]
- 7:43 PM Ticket #9251 (MemoryError opening mmCIF) created by
- […]
- 6:11 PM Ticket #9250 (MemoryError opening mmCIF) created by
- […]
- 8:41 AM Ticket #9249 (SEQCROW: session save: 'OrbitalGrid' object has no attribute 'data') created by
- […]
Jun 24, 2023:
- 7:41 AM Ticket #9248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:44 AM Ticket #9247 (Failed to create NSOpenGLContext) created by
- […]
- 2:26 AM Ticket #9246 (Item table column sorting: 'QCxTableModel' object has no attribute ...) created by
- […]
Jun 23, 2023:
- 4:38 PM Ticket #6511 (Focus on sequence selection) closed by
- fixed: Okay, now if you bring up the context menu over a sequence, there will …
- 2:22 PM Ticket #9245 (Crash in chain.existing_residues) created by
- […]
- 11:45 AM Ticket #9244 (AttributeError: module 'collections' has no attribute 'Set') closed by
- fixed
- 11:33 AM Ticket #9244 (AttributeError: module 'collections' has no attribute 'Set') created by
- […]
- 11:25 AM Ticket #9241 (Save MRC: could not broadcast input array) closed by
- worksforme: I tested the same steps: open map, z flip, close original map, save …
- 10:58 AM Ticket #9239 (Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash. Same reporter, same crash as #9238.
- 10:57 AM Ticket #9238 (Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 9:06 AM Ticket #9243 (Bundles not installing) created by
- […]
- 7:58 AM Ticket #9242 (Crash starting simulation) created by
- […]
- 4:39 AM Ticket #9241 (Save MRC: could not broadcast input array) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
