![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9239 closed defect (nonchimerax)
Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000011d643e00 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1647 in set_multishadow_view
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 239 in _draw_scene
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 158 in update_graphics_now
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 150 in resizeEvent
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 58 in event
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [30176]
Path: /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.6.1 (1.6.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [30176]
User ID: 501
Date/Time: 2023-06-22 17:04:26.135 -0500
OS Version: macOS 11.7.7 (20G1345)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: 98762940-2B22-C8FA-6D8C-2A42E3831126
Sleep/Wake UUID: F101AFDC-221F-48C2-8669-53E0D7BD09D1
Time Awake Since Boot: 190000 seconds
Time Since Wake: 3400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000013
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff202fe90e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2032d5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20211bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20372d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20282406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff46290096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff4628721c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5f9d1d09 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff4628872d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ec62dba IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ec62bce intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ec695eb glrWriteBufferData + 1369
13 GLEngine 0x00007fff6baa713f glBufferSubData_Exec + 608
14 libffi.dylib 0x00007fff2d9158f5 ffi_call_unix64 + 85
15 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
16 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
17 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
18 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
19 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
20 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
21 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
22 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
23 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
24 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
25 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
26 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
27 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
28 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
29 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
30 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
31 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
32 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
33 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
34 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
35 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
36 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
37 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
38 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
39 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
40 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
41 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
42 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
43 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
44 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
45 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
46 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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48 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
49 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
50 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
51 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
52 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
53 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
54 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
55 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
56 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
57 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
58 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
59 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
60 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
61 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
62 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
63 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
64 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
65 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
66 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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71 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
72 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
73 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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76 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
77 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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89 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
90 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
91 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
92 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
93 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
94 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
95 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
96 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
97 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
98 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
99 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
100 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
101 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
102 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
103 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
104 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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108 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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110 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
111 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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127 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
128 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
129 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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131 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
132 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
133 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
134 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
135 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
136 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
137 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
138 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
139 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
140 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
141 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
142 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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145 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
146 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
147 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
148 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
149 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
150 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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152 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
153 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
154 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
155 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
156 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
157 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
158 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
159 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
160 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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163 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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172 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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183 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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196 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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202 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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210 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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212 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
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509 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
510 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
511 libffi.dylib 0x00007fff2d91522d ffi_call_int + 699
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff203011b2 kevent64 + 10
1 QtWebEngineCore 0x0000000121b593ca 0x11d684000 + 72176586
2 QtWebEngineCore 0x0000000121b5926f 0x11d684000 + 72176239
3 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
4 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
5 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
6 QtWebEngineCore 0x0000000121b06aad 0x11d684000 + 71838381
7 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
8 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
9 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 2:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b14057 0x11d684000 + 71893079
5 QtWebEngineCore 0x0000000121b13b8d 0x11d684000 + 71891853
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff203011b2 kevent64 + 10
1 QtWebEngineCore 0x0000000121b593ca 0x11d684000 + 72176586
2 QtWebEngineCore 0x0000000121b5926f 0x11d684000 + 72176239
3 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
4 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
5 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
6 QtWebEngineCore 0x000000011f33d572 0x11d684000 + 30119282
7 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
8 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
9 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b5271f 0x11d684000 + 72148767
4 QtWebEngineCore 0x0000000121a7de69 0x11d684000 + 71278185
5 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
6 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
7 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
8 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
9 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
10 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 5:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b5271f 0x11d684000 + 72148767
4 QtWebEngineCore 0x0000000121a7de69 0x11d684000 + 71278185
5 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
6 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
7 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
8 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
9 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
10 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 6:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff203011b2 kevent64 + 10
1 QtWebEngineCore 0x0000000121b593ca 0x11d684000 + 72176586
2 QtWebEngineCore 0x0000000121b5926f 0x11d684000 + 72176239
3 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
4 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
5 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
6 QtWebEngineCore 0x000000012477f882 0x11d684000 + 118470786
7 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
8 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
9 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff202facbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032de49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000121b4ae22 0x11d684000 + 72117794
3 QtWebEngineCore 0x0000000123d8d505 0x11d684000 + 108041477
4 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
5 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 8:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b14057 0x11d684000 + 71893079
5 QtWebEngineCore 0x0000000121b13bbd 0x11d684000 + 71891901
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b5271f 0x11d684000 + 72148767
4 QtWebEngineCore 0x0000000121a7de69 0x11d684000 + 71278185
5 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
6 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
7 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
8 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
9 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
10 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121a7de08 0x11d684000 + 71278088
4 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
5 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
6 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
7 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
8 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
9 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 11:: NetworkService
0 libsystem_kernel.dylib 0x00007fff203011b2 kevent64 + 10
1 QtWebEngineCore 0x0000000121b593ca 0x11d684000 + 72176586
2 QtWebEngineCore 0x0000000121b5926f 0x11d684000 + 72176239
3 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
4 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
5 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
6 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
7 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
8 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b5271f 0x11d684000 + 72148767
4 QtWebEngineCore 0x0000000121a7de69 0x11d684000 + 71278185
5 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
6 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
7 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
8 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
9 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
10 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b14057 0x11d684000 + 71893079
5 QtWebEngineCore 0x0000000121b13bed 0x11d684000 + 71891949
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b5271f 0x11d684000 + 72148767
4 QtWebEngineCore 0x0000000121a7de69 0x11d684000 + 71278185
5 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
6 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
7 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
8 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
9 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
10 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 15:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b14057 0x11d684000 + 71893079
5 QtWebEngineCore 0x0000000121b13afd 0x11d684000 + 71891709
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 16:
0 libsystem_kernel.dylib 0x00007fff202facbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2032de49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x00000001105ef23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 17:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20425ebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2042459f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204239ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22db3b7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 18:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b5271f 0x11d684000 + 72148767
4 QtWebEngineCore 0x0000000121a7de69 0x11d684000 + 71278185
5 QtWebEngineCore 0x0000000121af9ff3 0x11d684000 + 71786483
6 QtWebEngineCore 0x0000000121ab1a32 0x11d684000 + 71490098
7 QtWebEngineCore 0x0000000121b20a58 0x11d684000 + 71944792
8 QtWebEngineCore 0x0000000121b20bea 0x11d684000 + 71945194
9 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
10 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b13d0c 0x11d684000 + 71892236
5 QtWebEngineCore 0x0000000121b13b2d 0x11d684000 + 71891757
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 20:
0 libsystem_pthread.dylib 0x00007fff20329420 start_wqthread + 0
Thread 21:
0 libsystem_pthread.dylib 0x00007fff20329420 start_wqthread + 0
Thread 22:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b13d0c 0x11d684000 + 71892236
5 QtWebEngineCore 0x0000000121b13b8d 0x11d684000 + 71891853
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 23:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff202f829a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff202f860c mach_msg + 60
2 QtWebEngineCore 0x0000000121b52933 0x11d684000 + 72149299
3 QtWebEngineCore 0x0000000121b134af 0x11d684000 + 71890095
4 QtWebEngineCore 0x0000000121b13d0c 0x11d684000 + 71892236
5 QtWebEngineCore 0x0000000121b13afd 0x11d684000 + 71891709
6 QtWebEngineCore 0x0000000121b4c458 0x11d684000 + 72123480
7 libsystem_pthread.dylib 0x00007fff2032d8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20329443 thread_start + 15
Thread 24:
0 libsystem_pthread.dylib 0x00007fff20329420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011d643e00 rcx: 0x00007fa9bb055a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007fa9bb055a80 rsp: 0x00007fa9bb055a58
r8: 0x00007fa9bb055f48 r9: 0xeaf4ae616a12bf2f r10: 0x000000011d643e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007fa9bd818518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff202fe90e rfl: 0x0000000000000246 cr2: 0x00007fa9bb39bbe0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
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0x10f787000 - 0x10f9effff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
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0x10fb7e000 - 0x10fb80fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
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0x10fbcd000 - 0x10fbcefff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x10fbd8000 - 0x10fbddfff +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x10fbec000 - 0x10fbf4fff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x10fc02000 - 0x10fc03fff +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x10fc0d000 - 0x10fc0efff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
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0x10fc26000 - 0x10fc26fff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10fc30000 - 0x10fcd1fff +libarrays.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10fcf7000 - 0x10fcfcfff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x10fd06000 - 0x11014dfff +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x1102a6000 - 0x113fb5fff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x114272000 - 0x114389fff +libgfortran.3.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x1143f8000 - 0x11442efff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
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0x7fff334f7000 - 0x7fff33503fff com.apple.IntentsFoundation (1.0 - 1) /System/Library/PrivateFrameworks/IntentsFoundation.framework/Versions/A/IntentsFoundation
0x7fff33504000 - 0x7fff33509fff com.apple.PushKit (1.0 - 1) /System/Library/Frameworks/PushKit.framework/Versions/A/PushKit
0x7fff3350a000 - 0x7fff3353dfff com.apple.C2 (1.3 - 573) /System/Library/PrivateFrameworks/C2.framework/Versions/A/C2
0x7fff3353e000 - 0x7fff3356efff com.apple.QuickLookThumbnailing (1.0 - 135.5) /System/Library/Frameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff3356f000 - 0x7fff33d70fff com.apple.vision.EspressoFramework (1.0 - 256.4.4) /System/Library/PrivateFrameworks/Espresso.framework/Versions/A/Espresso
0x7fff33d71000 - 0x7fff33d88fff com.apple.ANEServices (4.76 - 4.76) /System/Library/PrivateFrameworks/ANEServices.framework/Versions/A/ANEServices
0x7fff33d89000 - 0x7fff33deefff com.apple.proactive.support.ProactiveSupport (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveSupport.framework/Versions/A/ProactiveSupport
0x7fff33def000 - 0x7fff33df9fff com.apple.corerecents (1.0 - 1) /System/Library/PrivateFrameworks/CoreRecents.framework/Versions/A/CoreRecents
0x7fff33dfa000 - 0x7fff33e2bfff com.apple.iCalendar (7.0 - 833) /System/Library/PrivateFrameworks/iCalendar.framework/Versions/A/iCalendar
0x7fff33e2c000 - 0x7fff33e9cfff com.apple.CalendarFoundation (8.0 - 1178.5.2) /System/Library/PrivateFrameworks/CalendarFoundation.framework/Versions/A/CalendarFoundation
0x7fff33e9d000 - 0x7fff33e9ffff com.apple.CoreDuetDebugLogging (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDebugLogging.framework/Versions/A/CoreDuetDebugLogging
0x7fff33ea0000 - 0x7fff33eacfff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff34140000 - 0x7fff34413fff com.apple.spotlight.index (10.7.0 - 2150.29) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
0x7fff3442c000 - 0x7fff3447cfff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff345b3000 - 0x7fff34602fff com.apple.CalDAV (8.0 - 795) /System/Library/PrivateFrameworks/CalDAV.framework/Versions/A/CalDAV
0x7fff34603000 - 0x7fff346a0fff com.apple.CoreSuggestions (1.0 - 1115.519.0.1) /System/Library/PrivateFrameworks/CoreSuggestions.framework/Versions/A/CoreSuggestions
0x7fff346a1000 - 0x7fff3482bfff com.apple.ical.EventKit (3.0 - 1414.5.1) /System/Library/Frameworks/EventKit.framework/Versions/A/EventKit
0x7fff3482c000 - 0x7fff34b01fff com.apple.CalendarPersistence (8.0 - 1071.4.5.2) /System/Library/PrivateFrameworks/CalendarPersistence.framework/Versions/A/CalendarPersistence
0x7fff34b02000 - 0x7fff34b27fff com.apple.CalendarAgentLink (8.0 - 250) /System/Library/PrivateFrameworks/CalendarAgentLink.framework/Versions/A/CalendarAgentLink
0x7fff34b28000 - 0x7fff34b32fff com.apple.RTCReporting (11.85.2 - 11.85.2) /System/Library/PrivateFrameworks/RTCReporting.framework/Versions/A/RTCReporting
0x7fff34cda000 - 0x7fff34cdcfff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff34cf4000 - 0x7fff34d09fff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff34d5f000 - 0x7fff34dcafff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff34e90000 - 0x7fff34e93fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff34edd000 - 0x7fff352d1fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff35309000 - 0x7fff35781fff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff35a7d000 - 0x7fff35a84fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff362c6000 - 0x7fff362f6fff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff362f7000 - 0x7fff36317fff com.apple.MarkupUI (1.0 - 383.6.1) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff36318000 - 0x7fff3632bfff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff3632c000 - 0x7fff3634ffff com.apple.openscripting (1.7 - 190.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff36350000 - 0x7fff36353fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff36354000 - 0x7fff36357fff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff36358000 - 0x7fff3635bfff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff3635c000 - 0x7fff36363fff com.apple.ImageCapture (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff36364000 - 0x7fff37554fff com.apple.JavaScriptCore (16611 - 16611.3.10.1.19) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff375c0000 - 0x7fff376d2fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff376d3000 - 0x7fff37766fff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37767000 - 0x7fff379b1fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff37d4d000 - 0x7fff37dfafff com.apple.accounts.AccountsDaemon (113 - 113) /System/Library/PrivateFrameworks/AccountsDaemon.framework/Versions/A/AccountsDaemon
0x7fff37dfb000 - 0x7fff37dfdfff com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff383ad000 - 0x7fff383bcfff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff383bd000 - 0x7fff384e4fff com.apple.QuickLookUIFramework (5.0 - 928.5) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff388b7000 - 0x7fff3893dfff com.apple.coredav (1.0.1 - 889.0.0.4) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff3893e000 - 0x7fff38993fff com.apple.ExchangeWebServices (8.0 - 814.110.1) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38994000 - 0x7fff389d4fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38ad0000 - 0x7fff38ad0fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff38cb6000 - 0x7fff38ceefff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff38cef000 - 0x7fff38cfbfff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff38cfc000 - 0x7fff38d3ffff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff38d40000 - 0x7fff38d5ffff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff39183000 - 0x7fff39183fff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff39184000 - 0x7fff3918bfff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff3918c000 - 0x7fff3919afff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff3919b000 - 0x7fff391b2fff libAccessibility.dylib (2885.49.1) /usr/lib/libAccessibility.dylib
0x7fff3bbe9000 - 0x7fff3bc0bfff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bc0c000 - 0x7fff3bca3fff com.apple.AirPlaySync (1.0 - 2780.10.4.1.1) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3c834000 - 0x7fff3c8b7fff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3c8b8000 - 0x7fff3c8bbfff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3c8bc000 - 0x7fff3c8bffff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3c9b8000 - 0x7fff3c9b8fff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cb72000 - 0x7fff3cb91fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3ccde000 - 0x7fff3cd34fff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3cd35000 - 0x7fff3cd52fff com.apple.sidecar-core (1.0 - 231.0.3) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cd53000 - 0x7fff3cd56fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d16e000 - 0x7fff3d174fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d2e5000 - 0x7fff3d2fcfff com.apple.SafariServices.framework (16611 - 16611.3.10.1.19) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d4af000 - 0x7fff3d4bafff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d4cf000 - 0x7fff3d4e1fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d4e2000 - 0x7fff3d4e5fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d4fe000 - 0x7fff3d66dfff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d66e000 - 0x7fff3d8c9fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d8ca000 - 0x7fff3d9e0fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3d9e1000 - 0x7fff3d9f2fff com.apple.sidecar-ui (1.0 - 231.0.3) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e015000 - 0x7fff3e077fff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e078000 - 0x7fff3e09dfff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e2e9000 - 0x7fff3e44bfff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e44c000 - 0x7fff3e72dfff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e759000 - 0x7fff3e881fff com.apple.AnnotationKit (1.0 - 383.6.1) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e882000 - 0x7fff3ed22fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ed23000 - 0x7fff3ee0bfff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fb52000 - 0x7fff3fbcffff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40d6a000 - 0x7fff40d6dfff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41192000 - 0x7fff411b0fff libCGInterfaces.dylib (544.6) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42830000 - 0x7fff43590fff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43591000 - 0x7fff436a4fff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff436a5000 - 0x7fff436bdfff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff4373f000 - 0x7fff439b2fff com.apple.RawCamera.bundle (9.10.0 - 1450.3.1) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff4421b000 - 0x7fff4421ffff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45b96000 - 0x7fff45b99fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff46285000 - 0x7fff46290fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff478ba000 - 0x7fff478fbfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48149000 - 0x7fff48164fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5134d000 - 0x7fff5137afff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff5137b000 - 0x7fff51395fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51396000 - 0x7fff51435fff com.apple.Symbolication (12.5 - 64544.70.3) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51625000 - 0x7fff51628fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53cbd000 - 0x7fff53cf3fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff552e9000 - 0x7fff552ecfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5da24000 - 0x7fff5deaffff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5ec48000 - 0x7fff5fc2ffff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff693e1000 - 0x7fff693e5fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6b82c000 - 0x7fff6b832fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6b833000 - 0x7fff6b837fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6b838000 - 0x7fff6b847fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6b848000 - 0x7fff6b84afff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6b84b000 - 0x7fff6b853fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6b854000 - 0x7fff6b887fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6b888000 - 0x7fff6b8c4fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6b8c5000 - 0x7fff6ba58fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6ba59000 - 0x7fff6ba63fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6ba64000 - 0x7fff6bbe1fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bbe2000 - 0x7fff6bc0afff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6cea3000 - 0x7fff6cefbfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6dfa5000 - 0x7fff6dfacfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6dfad000 - 0x7fff6e094fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f22c000 - 0x7fff6f236fff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles
0x7fff6f61a000 - 0x7fff6f62cfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff7394a000 - 0x7fff73955fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73b6b000 - 0x7fff73b83fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77492000 - 0x7fff77499fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 352K 26
CoreAnimation 100K 14
CoreGraphics 12K 2
CoreUI image data 3404K 27
Foundation 16K 1
IOKit 7940K 1
Kernel Alloc Once 8K 1
MALLOC 420.3M 590
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 96K 24
Stack 162.7M 25
Stack Guard 56.0M 1
VM_ALLOCATE 69.9M 106
__DATA 36.7M 645
__DATA_CONST 27.6M 310
__DATA_DIRTY 1710K 213
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 532.0M 270
__OBJC_RO 70.2M 1
__OBJC_RW 2496K 2
__TEXT 679.0M 626
__UNICODE 588K 1
mapped file 278.7M 60
shared memory 2984K 26
=========== ======= =======
TOTAL 2.7G 3000
TOTAL, minus reserved VM space 2.3G 3000
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Updating list of available bundles failed: Internal Server Error
> open "/Users/aprilguoyue/Desktop/6_22_23 ChimeraX Session.cxs"
opened ChimeraX session
> show #2 models
> label height 1.5
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/aprilguoyue/Desktop/6_22_23 ChimeraX Session.cxs"
Log from Thu Jun 22 16:47:04 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/aprilguoyue/Desktop/6_22_23 ChimeraX Session.cxs"
Log from Thu Jun 22 12:26:41 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/aprilguoyue/Desktop/6_21_23_ChimeraX Session (Overlay Chain
> A).cxs"
Log from Wed Jun 21 17:29:19 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/aprilguoyue/Desktop/6_21_23_ChimeraX Session (Overlay Chain
> A).cxs" format session
Log from Wed Jun 21 10:20:30 2023 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Updating list of available bundles failed: Internal Server Error
> open /Users/aprilguoyue/Downloads/Mendoza/Proteins/6e3k.pdb
6e3k.pdb title:
Interferon γ signalling complex with IFNGR1 and IFNGR2 [more info...]
Chain information for 6e3k.pdb #1
---
Chain | Description | UniProt
A B | interferon γ | IFNG_HUMAN 1-133
C D | interferon γ receptor 1 | INGR1_HUMAN 1-229
E I | interferon γ receptor 2 | INGR2_HUMAN 28-247
Non-standard residues in 6e3k.pdb #1
---
BMA — β-D-mannopyranose
CYS — cysteine
EDO — 1,2-ethanediol (ethylene glycol)
MAN — α-D-mannopyranose
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose
> select /C/D
3295 atoms, 3377 bonds, 2 pseudobonds, 418 residues, 2 models selected
> delete atoms (#!1 & sel)
> delete bonds (#!1 & sel)
> select /E/I
3502 atoms, 3605 bonds, 442 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> hide cartoons
> show cartoons
[Repeated 1 time(s)]
> hide atoms
> rename #1 "6e3k Chain A.pdb"
> select /A
1041 atoms, 1060 bonds, 126 residues, 1 model selected
> select /B
1039 atoms, 1056 bonds, 129 residues, 1 model selected
> cartoon hide sel
> select /A
1041 atoms, 1060 bonds, 126 residues, 1 model selected
> color sel blue
> open /Users/aprilguoyue/Downloads/Mendoza/Proteins/AF-P01580-F1-model_v4.pdb
AF-P01580-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for interferon γ (P01580) [more info...]
Chain information for AF-P01580-F1-model_v4.pdb #2
---
Chain | Description | UniProt
A | interferon γ | IFNG_MOUSE 1-155
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A #1/B
Alignment identifier is 1
> sequence chain #2/A
Alignment identifier is 2/A
> undo
> color sel blue
> rename #2 "Mouse Chain A"
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6e3k Chain A.pdb, chain A (#1) with Mouse Chain A, chain A (#2),
sequence alignment score = 324.9
RMSD between 100 pruned atom pairs is 1.073 angstroms; (across all 124 pairs:
2.226)
> select #1/B
1039 atoms, 1056 bonds, 129 residues, 1 model selected
> cartoon sel
> color sel yellow
> select #2/A
1258 atoms, 1280 bonds, 155 residues, 1 model selected
> select #2/A:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:108-151
363 atoms, 368 bonds, 44 residues, 1 model selected
> select #2/A:152
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/A:152-155
35 atoms, 34 bonds, 4 residues, 1 model selected
> select #2/A:146
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:146-150
45 atoms, 44 bonds, 5 residues, 1 model selected
> select #2/A:155
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:151-155
44 atoms, 43 bonds, 5 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-10
73 atoms, 73 bonds, 10 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-26
191 atoms, 194 bonds, 26 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-21
157 atoms, 159 bonds, 21 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-24
177 atoms, 180 bonds, 24 residues, 1 model selected
> select #2/A:3-36,51-59,63-81,88-102,107-118,124-141,144-146
893 atoms, 904 bonds, 110 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-27
199 atoms, 202 bonds, 27 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-26
191 atoms, 194 bonds, 26 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-24
177 atoms, 180 bonds, 24 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-26
191 atoms, 194 bonds, 26 residues, 1 model selected
> select #2/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-25
184 atoms, 187 bonds, 25 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> undo
Undo failed, probably because structures have been modified.
> select #2/A:155
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:151-155
44 atoms, 43 bonds, 5 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2/A:147-148
19 atoms, 18 bonds, 2 residues, 1 model selected
> select #2/A:147-150
39 atoms, 38 bonds, 4 residues, 1 model selected
> select #2/A:142
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:142-150
75 atoms, 75 bonds, 9 residues, 1 model selected
> select #2/A:147
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:147-150
39 atoms, 38 bonds, 4 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2/A:144
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:144-146
21 atoms, 20 bonds, 3 residues, 1 model selected
> select #2/A:145
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:145-146
12 atoms, 11 bonds, 2 residues, 1 model selected
> select #2/A:144
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:144-146
21 atoms, 20 bonds, 3 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> save "/Users/aprilguoyue/Desktop/6_21_23_ChimeraX Session (Overlay Chain
> A).cxs"
——— End of log from Wed Jun 21 10:20:30 2023 ———
opened ChimeraX session
> save "/Users/aprilguoyue/Desktop/6_21_23_ChimeraX Session (Overlay Chain
> A).cxs"
——— End of log from Wed Jun 21 17:29:19 2023 ———
opened ChimeraX session
> select #2/A:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel ball
Changed 9 atom styles
> select #1/A-B:99
12 atoms, 10 bonds, 2 residues, 1 model selected
> select #1/A-B:99
12 atoms, 10 bonds, 2 residues, 1 model selected
> style sel ball
Changed 12 atom styles
> show sel atoms
> style sel stick
Changed 12 atom styles
> select #2/A:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> volume model-spec options
Expected a density maps specifier or a keyword
> select ligand
121 atoms, 125 bonds, 10 residues, 1 model selected
> save "/Users/aprilguoyue/Desktop/6_22_23 ChimeraX Session.cxs"
——— End of log from Thu Jun 22 12:26:41 2023 ———
opened ChimeraX session
> select add #1/B:99@OG
122 atoms, 125 bonds, 11 residues, 1 model selected
> ui tool show Distances
Exactly two atoms must be selected!
> select subtract #1/B:99@OG
121 atoms, 126 bonds, 10 residues, 1 model selected
> select add #1/B:99@OG
122 atoms, 126 bonds, 11 residues, 1 model selected
> select add #1/A:99@OG
123 atoms, 126 bonds, 12 residues, 1 model selected
> select subtract #1/A:99@OG
122 atoms, 125 bonds, 11 residues, 1 model selected
> select add #1/A:99@OG
123 atoms, 125 bonds, 12 residues, 1 model selected
Exactly two atoms must be selected!
> select subtract #1/B:99@OG
122 atoms, 125 bonds, 11 residues, 1 model selected
> select add #1/B:99@OG
123 atoms, 125 bonds, 12 residues, 1 model selected
Exactly two atoms must be selected!
> select subtract #1/B:99@OG
122 atoms, 125 bonds, 11 residues, 1 model selected
Exactly two atoms must be selected!
> select add #1/B:99@OG
123 atoms, 126 bonds, 12 residues, 2 models selected
Exactly two atoms must be selected!
> ui tool show Distances
Exactly two atoms must be selected!
> hide #2 models
> select add #1
2169 atoms, 2211 bonds, 262 residues, 2 models selected
> select subtract #1
1 bond, 1 model selected
Drag select of 2 residues
> style sel & #!1 ball
Changed 19 atom styles
> style sel & #!1 ball
Changed 19 atom styles
> select #1/A-B:99
12 atoms, 10 bonds, 2 residues, 1 model selected
> select #1/A-B:99
12 atoms, 10 bonds, 2 residues, 1 model selected
> select subtract #1/B:99@OG
11 atoms, 8 bonds, 2 residues, 1 model selected
> select add #1/B:99@OG
12 atoms, 8 bonds, 2 residues, 1 model selected
> select subtract #1/A:99
6 atoms, 4 bonds, 1 residue, 1 model selected
> select subtract #1/B:99
Nothing selected
> select add #1/B:99@OG
1 atom, 1 residue, 1 model selected
> select add #1/A:99@OG
2 atoms, 2 residues, 1 model selected
> distance #1/B:99@OG #1/A:99@OG
Distance between 6e3k Chain A.pdb #1/B SER 99 OG and /A SER 99 OG: 16.887Å
> select #1/B
1039 atoms, 1056 bonds, 129 residues, 1 model selected
> hide sel target a
> undo
> cartoon hide sel
> undo
> select #1/A-B:-1
8 atoms, 6 bonds, 2 residues, 1 model selected
> select #1/A-B:-1-1
38 atoms, 36 bonds, 6 residues, 1 model selected
> select #1/A-B:2
16 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/A-B:2
16 atoms, 14 bonds, 2 residues, 1 model selected
> label sel text 1
> select #1/A-B:15
22 atoms, 22 bonds, 2 residues, 1 model selected
> select #1/A-B:15
22 atoms, 22 bonds, 2 residues, 1 model selected
> label sel text 2
> select #1/A-B:19
20 atoms, 20 bonds, 2 residues, 1 model selected
> select #1/A-B:19
20 atoms, 20 bonds, 2 residues, 1 model selected
> label sel text 3
> select #1/A-B:24
16 atoms, 14 bonds, 2 residues, 1 model selected
> label sel text 4
> select #1/A-B:29
22 atoms, 22 bonds, 2 residues, 1 model selected
> select #1/A-B:29
22 atoms, 22 bonds, 2 residues, 1 model selected
> label sel text 5
> select #1/A-B:34
14 atoms, 12 bonds, 2 residues, 1 model selected
> select #1/A-B:34
14 atoms, 12 bonds, 2 residues, 1 model selected
> label sel text 6
> select #1/A-B:38
18 atoms, 16 bonds, 2 residues, 1 model selected
> select #1/A-B:38
18 atoms, 16 bonds, 2 residues, 1 model selected
> label sel text 7
> select #1/A-B:60
22 atoms, 22 bonds, 2 residues, 1 model selected
> select #1/A-B:60
22 atoms, 22 bonds, 2 residues, 1 model selected
> label sel text 8
> select #1/A-B:66
16 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/A-B:66
16 atoms, 14 bonds, 2 residues, 1 model selected
> label sel text 9
> select #1/A-B:81
22 atoms, 22 bonds, 2 residues, 1 model selected
> select #1/A-B:81
22 atoms, 22 bonds, 2 residues, 1 model selected
> label sel text 10
> select #1/A-B:85
16 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/A-B:85
16 atoms, 14 bonds, 2 residues, 1 model selected
> label sel text 11
> select #1/A-B:98
24 atoms, 24 bonds, 2 residues, 1 model selected
> label sel text 12
> select #1/A-B:102
16 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/A-B:102
16 atoms, 14 bonds, 2 residues, 1 model selected
> label sel text 13
> select #1/A-B:119
18 atoms, 16 bonds, 2 residues, 1 model selected
> select #1/A-B:119
18 atoms, 16 bonds, 2 residues, 1 model selected
> label sel text 14
> select add #3.1
18 atoms, 16 bonds, 2 residues, 2 models selected
> select add #3
18 atoms, 16 bonds, 1 pseudobond, 2 residues, 3 models selected
> select subtract #3
18 atoms, 16 bonds, 2 residues, 1 model selected
> select add #3.1
18 atoms, 16 bonds, 2 residues, 2 models selected
> select add #3
18 atoms, 16 bonds, 1 pseudobond, 2 residues, 3 models selected
> select subtract #3
18 atoms, 16 bonds, 2 residues, 1 model selected
> save "/Users/aprilguoyue/Desktop/6_22_23 ChimeraX Session.cxs"
——— End of log from Thu Jun 22 16:47:04 2023 ———
opened ChimeraX session
OpenGL version: 4.1 INTEL-16.5.14
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 3.1 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 512.0.0.0.0
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 11.7.7 (20G1345)
Kernel Version: Darwin 20.6.0
Time since boot: 1:44
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 2 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650 |
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Apple Intel graphics driver crash.
Same reporter, same crash as #9238.