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Opened 2 years ago
Closed 2 years ago
#9412 closed defect (fixed)
No numpy.bool
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.7.dev202307180036 (2023-07-18 00:36:28 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.7.dev202307180036 (2023-07-18)
© 2016-2023 Regents of the University of California. All rights reserved.
> open D:\LAB\Projects\TPR\coloring_session.cxs format session
Log from Thu Jul 13 16:13:38 2023UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
> open D:\LAB\Projects\TPR\coloring_session.cxs format session
Log from Wed Jul 5 13:48:11 2023UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open D:\\\LAB\\\Projects\\\TPR\\\U46619\\\TPR_U46619-refined10.pdb
TPR_U46619-refined10.pdb title:
\--- [more info...]
Chain information for TPR_U46619-refined10.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
R | No description available
Non-standard residues in TPR_U46619-refined10.pdb #1
---
TP4 — (TP4)
> set bgColor white
> ribbon style #1 width 3 thickness 1.5
> lighting soft
> color #1/R maroon target r
> ui tool show "Color Actions"
> color #1/R firebricktarget r
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color #1/R firebrick target r
> color #1/A goldenrod target r
> ui tool show "Color Actions"
> color #1/B darkred see green target r
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color #1/B darkred seegreen target r
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color #1/B dark sea green target r
> color #1/C dark gray target r
> color #1/C gray target r
> color #1/C dark gray target r
> select /L:401@C21
1 atom, 1 residue, 1 model selected
> select /R:92
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select add #1
6896 atoms, 7043 bonds, 1 pseudobond, 934 residues, 2 models selected
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> select clear
> select ::name="TP4"
25 atoms, 26 bonds, 1 residue, 1 model selected
> show sel atoms
> select up
6896 atoms, 7043 bonds, 934 residues, 1 model selected
> select up
6896 atoms, 7043 bonds, 934 residues, 1 model selected
> select up
6896 atoms, 7043 bonds, 934 residues, 1 model selected
> select clear
> size #1:TPR stickRadius 0.4
Changed 0 bond radii
> select /L:401@C9
1 atom, 1 residue, 1 model selected
> select up
25 atoms, 26 bonds, 1 residue, 1 model selected
> size sel stickRadius 0.4
Changed 26 bond radii
> color sel orange
> color sel dark orange
> color sel orange
> color sel byhetero
> select clear
> open D:/LAB/Projects/TPR/iBOP/TPR_IBOP_refined4.pdb
TPR_IBOP_refined4.pdb title:
\--- [more info...]
Chain information for TPR_IBOP_refined4.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
R | No description available
S | No description available
Non-standard residues in TPR_IBOP_refined4.pdb #2
---
IBP — (IBP)
> select add #2
8633 atoms, 8822 bonds, 3 pseudobonds, 1161 residues, 2 models selected
> hide sel atoms
> show sel cartoons
> ribbon style #2 width 3 thickness 1.5
> select clear
> select add #1
6896 atoms, 7043 bonds, 1 pseudobond, 934 residues, 2 models selected
> select clear
> hide #!1 models
> select ::name="IBP"
29 atoms, 31 bonds, 1 residue, 1 model selected
> show sel atoms
> size sel stickRadius 0.4
Changed 31 bond radii
> select clear
> color #2/R maroon target r
> show #!1 models
> hide #!2 models
> select #1/A:126
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
99 atoms, 101 bonds, 12 residues, 1 model selected
> select up
1397 atoms, 1431 bonds, 179 residues, 1 model selected
> select up
1494 atoms, 1527 bonds, 194 residues, 1 model selected
> select up
1766 atoms, 1799 bonds, 229 residues, 1 model selected
> select clear
> color #1/A tan target r
> color #1/A sandy brown target r
> color #1/B #9AE19D target r
> color #1/B #61C9A8 target r
> color #1/B #DDF45B target r
> color #1/B #61C9A8 target r
> save D:/LAB/Projects/TPR/coloring_session.cxs
——— End of log from Wed Jul 5 13:48:11 2023 ———
opened ChimeraX session
> color #R #8E5572 targetb r
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color #R #8E5572
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color #R #8E5572 target r
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color #1/R #8E5572
> color #1/A #EE8434
> color #1/B #5F9EA0
> color #1/C #D0EFB1
> color #1/C #F4E285
> color #1/C ##D4CBE5
> color #1/C #D4CBE5
> select #1/C
365 atoms, 371 bonds, 54 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #d4cbe5ff
> color sel #d5cce6ff
> color sel #d4cbe5ff
> color sel #d0c7e1ff
> color sel #c9c0d9ff
> color sel #c8bfd8ff
> color sel #c5bdd5ff
> color sel #c4bcd4ff
> color sel #c0b8d0ff
> color sel #bfb7cfff
> color sel #beb7ceff
> color sel #bdb5ccff
> color sel #bcb4cbff
> color sel #bbb3caff
> color sel #b9b1c8ff
> color sel #b8b0c8ff
> color sel #b3a9c8ff
> color sel #b1a7c8ff
> color sel #b1a6c8ff
> color sel #b0a5c8ff
> color sel #b2a5c8ff
> color sel #b3a5c8ff
> color sel #b5a5c8ff
> color sel #b6a5c8ff
> color sel #b7a6c8ff
> color sel #baa9c8ff
> color sel #bda9c8ff
> color sel #c0acc8ff
> color sel #c1adc8ff
> color sel #c3adc8ff
> color sel #c4aec8ff
> color sel #c4b0c8ff
> color sel #c3adc8ff
> color sel #c0a9c8ff
> color sel #bea6c8ff
> color sel #baa2c8ff
> color sel #b9a2c8ff
> color sel #b6a1c8ff
> color sel #b3a1c8ff
> color sel #b1a1c8ff
> color sel #ada1c8ff
> color sel #a9a1c8ff
> color sel #a4a1c8ff
> color sel #a2a1c8ff
> color sel #a4a2c8ff
> color sel #a8a2c8ff
> color sel #b2a2c8ff
> color sel #b9a3c8ff
> color sel #bda3c8ff
> color sel #c0a3c8ff
> color sel #c1a3c8ff
> color sel #c0a5c8ff
> color sel #b8a5c8ff
> color sel #b4a5c8ff
> color sel #aea5c8ff
> color sel #aaa5c8ff
> color sel #a7a5c8ff
> color sel #a5a5c8ff
> color sel #a9a6c8ff
> color sel #b1a6c8ff
> color sel #b7a6c8ff
> color sel #bba6c8ff
> color sel #bea6c8ff
> color sel #c1a6c8ff
> color sel #c5a6c8ff
> color sel #c7a7c8ff
> color sel #c8a7c8ff
> color sel #c8a7c7ff
> color sel #c8a7c8ff
> color sel #c8a6c8ff
> color sel #c198c8ff
> color sel #c197c8ff
> color sel #c095c8ff
> color sel #c094c8ff
> color sel #c095c8ff
> color sel #c197c8ff
> color sel #c2a3c8ff
> color sel #c4a3c8ff
> color sel #c5a3c8ff
> color sel #c8a3c5ff
> color sel #c8a3c4ff
> color sel #c8a5c5ff
> color sel #c8a5c6ff
> color sel #c8acc8ff
> color sel #c8adc8ff
> color sel #c8aec8ff
> color sel #c8b0c8ff
> color sel #c8aec8ff
> color sel #c8aac8ff
> color sel #c8a2c7ff
> select clear
> color #1/A sandy brown
> select #1/A:126
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
99 atoms, 101 bonds, 12 residues, 1 model selected
> select up
1397 atoms, 1431 bonds, 179 residues, 1 model selected
> select up
1494 atoms, 1527 bonds, 194 residues, 1 model selected
> select up
1766 atoms, 1799 bonds, 229 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #ff44aaff
> color sel #f4a460ff
> color sel #f7a461ff
> color sel #f5a360ff
> color sel #f4a260ff
> color sel #f0a05eff
> color sel #ec9d5dff
> color sel #ea9c5cff
> color sel #e79a5bff
> color sel #e5985aff
> color sel #e29659ff
> color sel #df9457ff
> color sel #de9457ff
> color sel #dd9357ff
> color sel #dc9256ff
> color sel #da9155ff
> color sel #dc9256ff
> color sel #de9457ff
> color sel #eb9c5cff
> color sel #ee9e5dff
> color sel #ef9f5eff
> color sel #f1a05fff
> color sel #f4a260ff
> color sel #f8a561ff
> color sel #f5a360ff
> color sel #f4a260ff
> color sel #e29659ff
> color sel #df9457ff
> color sel #de9457ff
> color sel #da9155ff
> color sel #d99055ff
> color sel #d89055ff
> select clear
> select #1/C
365 atoms, 371 bonds, 54 residues, 1 model selected
> color sel olive drab
> color sel sea green
> color sel dark khaki
> select clear
> select #1/C:11
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
66 atoms, 65 bonds, 11 residues, 1 model selected
> select up
365 atoms, 371 bonds, 54 residues, 1 model selected
> color sel salmon
> color sel dark salmon
> color sel light salmon
> color sel indigo
> color sel rosy brown
> color sel light coral
> color sel burly wood
> color sel peach puff
> color sel burly wood
> color sel tan
> color sel burly wood
> select clear
> select #1/C
365 atoms, 371 bonds, 54 residues, 1 model selected
> color sel #ddeebbff
> color sel #deb887ff
> color sel #dfb888ff
> color sel #ebc28fff
> color sel #ecc28fff
> color sel #efc591ff
> color sel #f1c692ff
> color sel #f4c994ff
> color sel #f8cc97ff
> color sel #f9cd97ff
> color sel #f8cc97ff
> color sel #f7cb96ff
> color sel #ecc28fff
> color sel #ebc28fff
> color sel #eac18eff
> color sel #e8bf8dff
> color sel #eac18eff
> color sel #ecc28fff
> color sel #f0c692ff
> select #1/R:40
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
181 atoms, 184 bonds, 27 residues, 1 model selected
> select up
2258 atoms, 2318 bonds, 312 residues, 1 model selected
> color sel firebrick
> select clear
> select #1/B dark sea green
Expected a keyword
> color #1/B dark sea green
> color #1/C honeydew
> color #1/C cadet blue
> color #1/C lavender
> set bgColor black
> set bgColor transparent
> set bgColor white
> set bgColor #ffffff00
> color #1/C plum
> color #1/C medium purple
> color #1/C medium orchid
> color #1/C medium slate blue
> color #1/C dark green
> color #1/C olive green
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color #1/C dark olive green
> color #1/B dark olive green
> color #1/C dark sea green
> color #1/B dark sea green
[Repeated 1 time(s)]
> color #1/C dark olive green
> save D:/LAB/Projects/TPR/coloring_session.cxs
——— End of log from Thu Jul 13 16:13:38 2023 ———
opened ChimeraX session
> open 7aue
7aue title:
Melanocortin receptor 4 (MC4R) Gs protein complex [more info...]
Chain information for 7aue #3
---
Chain | Description | UniProt
A | Guanine nucleotide-binding protein G(i) subunit alpha-1,Isoform Gnas-2 of
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short |
A0A3B3ITX3_HUMAN 1-31, GNAS2_HUMAN 32-373
B | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 |
GBB1_HUMAN 19-357
C | AMINOSERINE |
G | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 |
GBG2_HUMAN 1-71
R | Melanocortin receptor 4 | MC4R_HUMAN 1-332
S | scFv16 |
Non-standard residues in 7aue #3
---
ACY — acetic acid
CA — calcium ion
NH2 — amino group
> select add #3
8755 atoms, 8934 bonds, 12 pseudobonds, 1135 residues, 3 models selected
> hide sel atoms
> show sel cartoons
C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\ribbon.py:635: FutureWarning: In the future `np.bool`
will be defined as the corresponding NumPy scalar.
from numpy import bool
Traceback (most recent call last):
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 1880, in
_update_graphics_if_needed
s[i].update_graphics_if_needed()
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 358, in update_graphics_if_needed
self._update_graphics(gc)
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 377, in _update_graphics
self._update_ribbon_graphics(changes)
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 669, in _update_ribbon_graphics
rd.update_ribbon_highlight()
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\ribbon.py", line 635, in update_ribbon_highlight
from numpy import bool
ImportError: cannot import name 'bool' from 'numpy' (C:\Program
Files\ChimeraX_daily\bin\Lib\site-packages\numpy\\__init__.py)
Error processing trigger "graphics update":
ImportError: cannot import name 'bool' from 'numpy' (C:\Program
Files\ChimeraX_daily\bin\Lib\site-packages\numpy\\__init__.py)
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\atomic\ribbon.py", line 635, in update_ribbon_highlight
from numpy import bool
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 457.49
OpenGL renderer: GeForce GTX 1050 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.2
Locale: en_IL.cp1252
Qt version: PyQt6 6.5.1, Qt 6.5.1
Qt runtime version: 6.5.1
Qt platform: windows
Manufacturer: LENOVO
Model: 81FV
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 17,046,917,120
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.2.0
ChimeraX-AddCharge: 1.5.11
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.46.1
ChimeraX-AtomicLibrary: 10.0.8
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.4
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.dev202307180036
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.2
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.2
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.2
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.9
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.30.2
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
comtypes: 1.1.14
contourpy: 1.1.0
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.41.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.9.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.38
imagecodecs: 2023.7.10
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.7
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.3.1
jupyterlab-widgets: 3.0.8
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.3
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.25.1
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
Pillow: 10.0.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.9.1
prompt-toolkit: 3.0.39
psutil: 5.9.5
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.5.1
PyQt6-Qt6: 6.5.1
PyQt6-sip: 13.5.1
PyQt6-WebEngine-commercial: 6.5.0
PyQt6-WebEngine-Qt6: 6.5.1
python-dateutil: 2.8.2
pytz: 2023.3
pywin32: 305
pyzmq: 25.1.0
qtconsole: 5.4.3
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.2
traitlets: 5.9.0
typing-extensions: 4.7.1
tzdata: 2023.3
urllib3: 2.0.3
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.8
WMI: 1.5.1
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → No numpy.bool |
comment:2 by , 2 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed a few days ago. One or two daily builds had this bug after updating to numpy 1.25