module 'collections' has no attribute 'Set'

[david.flesher@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.7.dev202306142048 (2023-06-14 20:48:12 UTC)
Description
Trying to save a pdb file end in error.

Log:
UCSF ChimeraX version: 1.7.dev202306142048 (2023-06-14)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> surface cap false

Log from Thu Jun 29 18:29:24 2023 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.dev202306142048 (2023-06-14)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> cd C:\google_drive_streaming\Other
> computers\main\drive_mirror\gary_brudvig\2022\projects\D170E_mutant_PSII_new\modeling\other_maps\jimin_map_difference\modeling_v2

Expected name of a folder to open/read; a name of 'browse' will bring up a
file browser or a keyword  

> open "C:/google_drive_streaming/Other
> computers/main/drive_mirror/gary_brudvig/2022/projects/D170E_mutant_PSII_new/modeling/other_maps/jimin_map_difference/modeling_v2/jimin_D170E.map"

Opened jimin_D170E.map as #1, grid size 350,350,350, pixel 0.629, shown at
level 0.00157, step 2, values float32  

> open "C:/google_drive_streaming/Other
> computers/main/drive_mirror/gary_brudvig/2022/projects/D170E_mutant_PSII_new/modeling/other_maps/jimin_map_difference/modeling_v2/jimin_diff_scaled.map"

Opened jimin_diff_scaled.map as #2, grid size 350,350,350, pixel 0.629, shown
at level 0.0012, step 2, values float32  

> open "C:/google_drive_streaming/Other
> computers/main/drive_mirror/gary_brudvig/2022/projects/D170E_mutant_PSII_new/modeling/other_maps/jimin_map_difference/modeling_v2/jimin_WT.map"

Opened jimin_WT.map as #3, grid size 350,350,350, pixel 0.629, shown at level
0.00184, step 2, values float32  

> open "C:/google_drive_streaming/Other
> computers/main/drive_mirror/gary_brudvig/2022/projects/D170E_mutant_PSII_new/modeling/other_maps/jimin_map_difference/modeling_v2/D170E_modeling48_jimin_v6.pdb"

Chain information for D170E_modeling48_jimin_v6.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
O | No description available  
Q | No description available  
R | No description available  
T | No description available  
U | No description available  
V | No description available  
X | No description available  
Y | No description available  
Z | No description available  
  

> open "C:/google_drive_streaming/Other
> computers/main/drive_mirror/gary_brudvig/2022/projects/D170E_mutant_PSII_new/modeling/other_maps/jimin_map_difference/modeling_v2/WT_jimin_v5.pdb"

Chain information for WT_jimin_v5.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
O | No description available  
Q | No description available  
R | No description available  
T | No description available  
U | No description available  
V | No description available  
X | No description available  
Y | No description available  
Z | No description available  
  

> select add #4

27316 atoms, 27595 bonds, 735 pseudobonds, 3399 residues, 3 models selected  

> select add #5

54680 atoms, 55126 bonds, 849 pseudobonds, 6905 residues, 5 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.99147,0.07637,-0.1056,8.7541,0.075871,-0.99708,-0.00874,233.26,-0.10596,0.00065358,-0.99437,332.65,#5,0.99147,0.07637,-0.1056,8.7541,0.075871,-0.99708,-0.00874,233.26,-0.10596,0.00065358,-0.99437,332.65

> view matrix models
> #4,0.99147,0.07637,-0.1056,-36.24,0.075871,-0.99708,-0.00874,243.96,-0.10596,0.00065358,-0.99437,280.19,#5,0.99147,0.07637,-0.1056,-36.24,0.075871,-0.99708,-0.00874,243.96,-0.10596,0.00065358,-0.99437,280.19

> view matrix models
> #4,0.99147,0.07637,-0.1056,-39.781,0.075871,-0.99708,-0.00874,236.4,-0.10596,0.00065358,-0.99437,282.58,#5,0.99147,0.07637,-0.1056,-39.781,0.075871,-0.99708,-0.00874,236.4,-0.10596,0.00065358,-0.99437,282.58

> view matrix models
> #4,0.99147,0.07637,-0.1056,-40.573,0.075871,-0.99708,-0.00874,235.27,-0.10596,0.00065358,-0.99437,277.46,#5,0.99147,0.07637,-0.1056,-40.573,0.075871,-0.99708,-0.00874,235.27,-0.10596,0.00065358,-0.99437,277.46

> view matrix models
> #4,0.99459,0.098284,-0.033657,-55.129,0.099778,-0.99395,0.046014,223.15,-0.028931,-0.049123,-0.99837,274.53,#5,0.99459,0.098284,-0.033657,-55.129,0.099778,-0.99395,0.046014,223.15,-0.028931,-0.049123,-0.99837,274.53

> view matrix models
> #4,0.99459,0.098284,-0.033657,-45.795,0.099778,-0.99395,0.046014,226.87,-0.028931,-0.049123,-0.99837,275.22,#5,0.99459,0.098284,-0.033657,-45.795,0.099778,-0.99395,0.046014,226.87,-0.028931,-0.049123,-0.99837,275.22

> view matrix models
> #4,0.95476,0.2893,-0.06885,-58.297,0.2906,-0.9568,0.0095395,204.47,-0.063116,-0.029116,-0.99758,276.93,#5,0.95476,0.2893,-0.06885,-58.297,0.2906,-0.9568,0.0095395,204.47,-0.063116,-0.029116,-0.99758,276.93

> view matrix models
> #4,0.95476,0.2893,-0.06885,-60.371,0.2906,-0.9568,0.0095395,206.04,-0.063116,-0.029116,-0.99758,276.42,#5,0.95476,0.2893,-0.06885,-60.371,0.2906,-0.9568,0.0095395,206.04,-0.063116,-0.029116,-0.99758,276.42

> ui tool show "Fit in Map"

> show sel cartoons

> hide sel atoms

> fitmap #4 inMap #1

Fit molecule D170E_modeling48_jimin_v6.pdb (#4) to map jimin_D170E.map (#1)
using 27316 atoms  
average map value = 0.004373, steps = 116  
shifted from previous position = 5.49  
rotated from previous position = 5.79 degrees  
atoms outside contour = 6550, contour level = 0.0015716  
  
Position of D170E_modeling48_jimin_v6.pdb (#4) relative to jimin_D170E.map
(#1) coordinates:  
Matrix rotation and translation  
0.93324326 0.35924481 0.00042822 -82.17181506  
0.35924494 -0.93324327 -0.00026348 195.35394129  
0.00030498 0.00039973 -0.99999987 264.66833571  
Axis 0.98316911 0.18269774 0.00018594  
Axis point 0.00000000 105.28907372 132.35939823  
Rotation angle (degrees) 179.98067517  
Shift along axis -45.04885586  
  

> fitmap #5 inMap #3

Fit molecule WT_jimin_v5.pdb (#5) to map jimin_WT.map (#3) using 27364 atoms  
average map value = 0.006054, steps = 116  
shifted from previous position = 5.45  
rotated from previous position = 5.77 degrees  
atoms outside contour = 5632, contour level = 0.0018362  
  
Position of WT_jimin_v5.pdb (#5) relative to jimin_WT.map (#3) coordinates:  
Matrix rotation and translation  
0.93326233 0.35919550 0.00000175 -82.06356284  
0.35919550 -0.93326232 0.00014609 195.27038850  
0.00005411 -0.00013571 -0.99999999 264.76834322  
Axis -0.98317418 -0.18267056 -0.00001538  
Axis point 0.00000000 105.26841448 132.37739783  
Rotation angle (degrees) 179.99178864  
Shift along axis 45.00855169  
  

> pwd

Current working directory is: C:\Program Files\ChimeraX_daily\bin  

> cd C:\Users\david\Desktop\Temp\temp_60

Current working directory is: C:\Users\david\Desktop\Temp\temp_60  

> save D170E_modeling48_jimin_v6_EMDB.pdb #4

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 103, in provider_save  
remember_file(session, path, data_format.nicknames[0],  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\filehistory.py", line 230, in remember_file  
h.remember_file(filename, format, models, database = database, file_saved =
file_saved,  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\filehistory.py", line 68, in remember_file  
self.capture_thumbnails_cb()  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\filehistory.py", line 82, in capture_thumbnails_cb  
if models != 'all models':  
^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\orderedset.py", line 73, in __ne__  
if isinstance(other, collections.Set):  
^^^^^^^^^^^^^^^  
AttributeError: module 'collections' has no attribute 'Set'  
  
AttributeError: module 'collections' has no attribute 'Set'  
  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\orderedset.py", line 73, in __ne__  
if isinstance(other, collections.Set):  
^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> save C:/Users/david/Desktop/tmp/tmp.cxs

——— End of log from Thu Jun 29 18:29:24 2023 ———

opened ChimeraX session  

> save D170E_modeling48_jimin_v6_EMDB.pdb #4

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 103, in provider_save  
remember_file(session, path, data_format.nicknames[0],  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\filehistory.py", line 230, in remember_file  
h.remember_file(filename, format, models, database = database, file_saved =
file_saved,  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\filehistory.py", line 68, in remember_file  
self.capture_thumbnails_cb()  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\filehistory.py", line 82, in capture_thumbnails_cb  
if models != 'all models':  
^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\orderedset.py", line 73, in __ne__  
if isinstance(other, collections.Set):  
^^^^^^^^^^^^^^^  
AttributeError: module 'collections' has no attribute 'Set'  
  
AttributeError: module 'collections' has no attribute 'Set'  
  
File "C:\Program Files\ChimeraX_daily\bin\Lib\site-
packages\chimerax\core\orderedset.py", line 73, in __ne__  
if isinstance(other, collections.Set):  
^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 516.94
OpenGL renderer: NVIDIA GeForce GTX 970/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_US.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7A40
OS: Microsoft Windows 10 Home (Build 19045)
Memory: 17,128,370,176
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 3600 6-Core Processor              
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.45.7
    ChimeraX-AtomicLibrary: 10.0.7
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.3
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202306142048
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.2
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.2
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.2
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.29.1
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.1.0
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.40.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2023.3.16
    imagesize: 1.4.1
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.1
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.3
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.6
    PyOpenGL-accelerate: 3.1.6
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.1.0
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.8.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.2
    traitlets: 5.9.0
    typing-extensions: 4.6.3
    tzdata: 2023.3
    urllib3: 2.0.3
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1

[Eric Pettersen]

Hi David,

Thanks for reporting this problem. It was fixed about 6 days ago, so if you get a current daily build then this won't bite you anymore.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab