![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9376 closed defect (can't reproduce)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-12.5-arm64-arm-64bit
ChimeraX Version: 1.6rc202304072249 (2023-04-07 22:49:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000102d04580 (most recent call first):
File "/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 1300000,
"procLaunch" : "2023-07-10 11:47:08.5932 +0200",
"procRole" : "Background",
"version" : 2,
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"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"procStartAbsTime" : 33030430072826,
"coalitionID" : 122451,
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"captureTime" : "2023-07-10 19:16:52.3138 +0200",
"incident" : "0610B993-6937-45A5-BD42-8AD28197508F",
"bug_type" : "309",
"pid" : 72129,
"procExitAbsTime" : 33459909123524,
"translated" : false,
"cpuType" : "ARM-64",
"procName" : "ChimeraX",
"procPath" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.6-rc2023.04.07.app\/Contents\/MacOS\/ChimeraX",
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F3322CE2-C3C9-D6D1-944C-287162EF24E9",
"wakeTime" : 3,
"sleepWakeUUID" : "25CFC518-1A11-4F97-806A-0BA9DF6E74BF",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105555129532392\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600078000000-600080000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105555129532392\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600078000000-600080000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
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===== Log before crash start =====
UCSF ChimeraX version: 1.6rc202304072249 (2023-04-07)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/karlaivettedelaobecerra/Downloads/cryosparc_P25_J586_005_volume_map_sharp(1).mrc
> /Users/karlaivettedelaobecerra/Downloads/cryosparc_P25_J607_006_volume_map_sharp.mrc.download
Unrecognized file suffix '.download'
> open
> /Users/karlaivettedelaobecerra/Downloads/cryosparc_P25_J586_005_volume_map_sharp(1).mrc
Opened cryosparc_P25_J586_005_volume_map_sharp(1).mrc as #1, grid size
420,420,420, pixel 1.04, shown at level 0.0438, step 2, values float32
> volume #1 level 0.08587
> volume #1 step 1
> surface dust #1 size 5
> volume flip #1
Opened cryosparc_P25_J586_005_volume_map_sharp(1).mrc z flip as #2, grid size
420,420,420, pixel 1.04, shown at step 1, values float32
> surface dust #2 size 5
> volume #2 level 0.1023
> open
> /Users/karlaivettedelaobecerra/Downloads/cryosparc_P25_J607_006_volume_map_sharp.mrc
Opened cryosparc_P25_J607_006_volume_map_sharp.mrc as #3, grid size
420,420,420, pixel 1.04, shown at level 0.0456, step 2, values float32
> volume #3 level 0.1089
> surface dust #3 size 5
> volume flip #3
Opened cryosparc_P25_J607_006_volume_map_sharp.mrc z flip as #4, grid size
420,420,420, pixel 1.04, shown at step 1, values float32
> surface dust #4 size 5
> volume #4 level 0.1492
> open
> /Users/karlaivettedelaobecerra/Downloads/cryosparc_P3_J115_map_sharp.mrc
Opened cryosparc_P3_J115_map_sharp.mrc as #5, grid size 380,380,380, pixel
1.04, shown at level 0.133, step 2, values float32
> surface dust #5 size 5
> volume #5 level 0.282
> ui mousemode right "translate selected models"
> volume #5 step 1
> ui mousemode right "translate selected models"
> select #5
2 models selected
> view matrix models
> #5,0.2991,-0.065605,0.95196,-48.688,0.40309,0.91294,-0.063733,-47.382,-0.8649,0.40279,0.29951,232.13
> view matrix models
> #5,-0.3825,0.62041,0.68468,4.6574,0.34925,0.78313,-0.51452,80.628,-0.85541,0.04232,-0.51622,467.49
> view matrix models
> #5,-0.99734,0.0093992,-0.072245,395.9,0.041266,0.89011,-0.45387,106.57,0.06004,-0.45564,-0.88814,464.46
> view matrix models
> #5,-0.47163,0.87735,-0.088502,131.15,0.51322,0.19149,-0.83662,229.47,-0.71706,-0.44,-0.54058,538.96
> view matrix models
> #5,-0.93123,-0.22113,0.28968,353.27,-0.35582,0.72355,-0.5915,243.09,-0.0788,-0.6539,-0.75247,501.41
> view matrix models
> #5,-0.80524,-0.3737,-0.46037,512.72,-0.02971,0.80086,-0.59812,167.04,0.59221,-0.46795,-0.65598,317.1
> view matrix models
> #5,-0.99925,0.033332,-0.019663,380.84,0.038058,0.75423,-0.65551,174.83,-0.0070189,-0.65577,-0.75493,488.51
> view matrix models
> #5,-0.6376,0.63727,-0.43284,280.03,0.75453,0.40327,-0.51774,76.832,-0.15538,-0.6567,-0.73797,513.65
> view matrix models
> #5,-0.8623,-0.14318,0.48573,284.73,-0.30347,0.91399,-0.26932,130.12,-0.40539,-0.37964,-0.83159,527.4
> view matrix models
> #5,-0.48783,0.6642,-0.56645,273.59,0.86715,0.29411,-0.40194,52.486,-0.10037,-0.68727,-0.71943,505.18
> view matrix models
> #5,0.89708,-0.28861,-0.33459,144.15,-0.22788,-0.95093,0.20928,376.77,-0.37858,-0.11149,-0.91883,488.5
> view matrix models
> #5,-0.12665,-0.83944,-0.52848,486.43,-0.94793,-0.05452,0.31377,320.5,-0.2922,0.5407,-0.78883,319.49
> view matrix models
> #5,-0.88694,0.42698,0.17617,243.17,0.43983,0.66427,0.6044,-143.83,0.14104,0.61355,-0.77696,219.96
> view matrix models
> #5,0.056283,0.94728,-0.31542,63.116,0.76482,0.16216,0.6235,-113.25,0.64178,-0.27633,-0.71538,282.87
> view matrix models
> #5,0.98385,0.16329,-0.073334,-13.309,0.15622,-0.58326,0.79712,111.42,0.087388,-0.7957,-0.59935,465.41
> view matrix models
> #5,0.98776,0.02599,-0.15382,28.957,0.13223,-0.66265,0.73716,143.65,-0.082772,-0.74848,-0.65798,500.98
> view matrix models
> #5,0.32525,-0.94319,0.067862,297.22,-0.27806,-0.026802,0.96019,53.87,-0.90382,-0.33117,-0.27098,498.36
> view matrix models
> #5,-0.92874,0.020253,0.37017,289.71,0.23995,0.79398,0.55858,-121.1,-0.2826,0.6076,-0.74226,295.18
> view matrix models
> #5,-0.9185,0.026763,-0.39452,443.69,-0.27629,0.67032,0.68872,-25.057,0.28288,0.74159,-0.60829,133.41
> view matrix models
> #5,-0.83302,0.55324,0.0021968,244.26,0.35875,0.53714,0.7634,-136.46,0.42116,0.63671,-0.64593,134.86
> view matrix models
> #5,0.46816,0.20301,0.86001,-113.98,0.68567,0.53045,-0.49848,61.555,-0.55739,0.82305,0.10913,131.3
> view matrix models
> #5,0.98549,-0.15218,-0.075228,47.583,0.0605,0.7289,-0.68194,180.85,0.15861,0.66749,0.72753,-103.07
> view matrix models
> #5,0.98714,0.0035167,0.15979,-31.061,0.095907,0.78674,-0.60979,148.08,-0.12786,0.61728,0.77629,-48.504
> hide #!5 models
> show #!5 models
> select add #4
4 models selected
> select subtract #5
2 models selected
> view matrix models
> #4,0.76169,0.42371,0.4902,-140.96,-0.47062,0.88179,-0.03092,138.13,-0.44535,-0.20715,0.87106,172.27
> view matrix models
> #4,0.13043,-0.76151,0.6349,220.51,0.48894,0.60649,0.62698,-162.93,-0.86251,0.22865,0.45144,265.35
> view matrix models
> #4,-0.52894,-0.78135,0.33124,439.43,0.47828,0.047968,0.8769,-96.693,-0.70105,0.62225,0.34833,168.08
> view matrix models
> #4,-0.8715,-0.22865,0.43383,378.43,0.44676,-0.0054201,0.89463,-82.132,-0.2022,0.97349,0.10687,33.159
> view matrix models
> #4,0.42826,-0.69943,0.57217,153.51,0.66958,0.67082,0.31885,-150.97,-0.60684,0.24657,0.75561,138.12
> view matrix models
> #4,0.95381,-0.12881,0.27138,-20.889,0.0848,0.98211,0.16813,-51.667,-0.28818,-0.13735,0.94767,105.47
> view matrix models
> #4,0.95381,-0.12881,0.27138,-23.666,0.0848,0.98211,0.16813,-82.732,-0.28818,-0.13735,0.94767,102.27
> view matrix models
> #4,0.82953,-0.36219,0.42509,20.522,0.31012,0.93177,0.18874,-127.59,-0.46444,-0.024738,0.88526,131.91
> ui tool show "Fit in Map"
> fitmap #4 inMap #5
Fit map cryosparc_P25_J607_006_volume_map_sharp.mrc z flip in map
cryosparc_P3_J115_map_sharp.mrc using 134794 points
correlation = 0.2702, correlation about mean = 0.03503, overlap = 3168
steps = 200, shift = 15.2, angle = 18.4 degrees
Position of cryosparc_P25_J607_006_volume_map_sharp.mrc z flip (#4) relative
to cryosparc_P3_J115_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
0.76602184 -0.48904106 0.41719225 45.70939273
0.13578071 0.75746359 0.63860200 -142.47683111
-0.62831054 -0.43253642 0.64663599 313.23586998
Axis -0.66038982 0.64458467 0.38522186
Axis point 0.00000000 415.36758302 379.48917222
Rotation angle (degrees) 54.19272103
Shift along axis -1.35909320
> select subtract #4
Nothing selected
> select add #4
2 models selected
> view matrix models
> #4,0.56762,-0.64628,0.51003,105.72,0.62968,0.7399,0.23677,-169.39,-0.53039,0.18676,0.82693,112.34
> view matrix models
> #4,0.56762,-0.64628,0.51003,103.38,0.62968,0.7399,0.23677,-170.18,-0.53039,0.18676,0.82693,116.99
> view matrix models
> #4,0.55411,-0.63064,0.54338,95.958,0.60341,0.75396,0.25971,-172.14,-0.57347,0.18397,0.7983,133.5
> select subtract #4
Nothing selected
> select add #4
2 models selected
> view matrix models
> #4,0.5615,-0.62216,0.54556,92.03,0.63846,0.74515,0.19267,-163.77,-0.5264,0.24013,0.81563,107.27
> fitmap #4 inMap #5
Fit map cryosparc_P25_J607_006_volume_map_sharp.mrc z flip in map
cryosparc_P3_J115_map_sharp.mrc using 134794 points
correlation = 0.6551, correlation about mean = 0.5075, overlap = 1.064e+04
steps = 116, shift = 2.96, angle = 10.6 degrees
Position of cryosparc_P25_J607_006_volume_map_sharp.mrc z flip (#4) relative
to cryosparc_P3_J115_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
0.55139264 -0.69251920 0.46517020 124.95715885
0.28478213 0.68034856 0.67529621 -165.29879559
-0.78413347 -0.23988120 0.57235628 328.89157802
Axis -0.49975926 0.68221862 0.53368383
Axis point 370.85389861 0.00000000 88.69409980
Rotation angle (degrees) 66.29368234
Shift along axis 0.30570367
> select subtract #4
Nothing selected
> volume #4 level 0.198
> volume #4 level 0.138
> ui mousemode right "translate selected models"
> select add #2
2 models selected
> view matrix models
> #2,0.98473,-0.061847,0.16271,-18.435,0.019394,0.96791,0.25054,-51.253,-0.17298,-0.24356,0.95434,99.66
> view matrix models
> #2,0.57855,-0.64207,0.50302,121.6,0.70143,0.70639,0.094918,-117.13,-0.41627,0.29792,0.85905,61.772
> view matrix models
> #2,0.57855,-0.64207,0.50302,120.05,0.70143,0.70639,0.094918,-130.58,-0.41627,0.29792,0.85905,47.487
> view matrix models
> #2,0.57855,-0.64207,0.50302,113.38,0.70143,0.70639,0.094918,-154.71,-0.41627,0.29792,0.85905,66.249
> fitmap #2 inMap #4
Fit map cryosparc_P25_J586_005_volume_map_sharp(1).mrc z flip in map
cryosparc_P25_J607_006_volume_map_sharp.mrc z flip using 220423 points
correlation = 0.9863, correlation about mean = 0.9347, overlap = 1.102e+04
steps = 184, shift = 11.6, angle = 11.1 degrees
Position of cryosparc_P25_J586_005_volume_map_sharp(1).mrc z flip (#2)
relative to cryosparc_P25_J607_006_volume_map_sharp.mrc z flip (#4)
coordinates:
Matrix rotation and translation
0.99999654 -0.00239110 0.00110154 0.25185571
0.00239181 0.99999693 -0.00064576 -0.39536263
-0.00109999 0.00064839 0.99999919 0.15020937
Axis 0.23868688 0.40603898 0.88213430
Axis point 170.87602222 101.87971456 0.00000000
Rotation angle (degrees) 0.15532857
Shift along axis 0.03208685
> volume #2 level 0.1174
> select subtract #2
Nothing selected
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #5 level 0.1754
> show #!2 models
> hide #!2 models
> volume #5 level 0.282
> volume #5 level 0.1691
> volume #5 level 0.2381
Unsupported scale factor (0.000000) detected on Display1
> open /Users/karlaivettedelaobecerra/Desktop/20230306-c3convREF22.pdb
Chain information for 20230306-c3convREF22.pdb #6
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
F | No description available
G | No description available
H | No description available
> hide #5-6 target a
> cartoon #5-6
> select /F:287
6 atoms, 5 bonds, 1 residue, 1 model selected
> view matrix models #6,1,0,0,-8.6116,0,1,0,-24.381,0,0,1,-70.507
Drag select of 74 residues
Drag select of 125 residues
> view matrix models
> #6,-0.85259,-0.20941,-0.47879,529.5,0.52258,-0.34347,-0.78035,328.03,-0.001041,-0.91552,0.40227,258.87
> view matrix models
> #6,0.89711,-0.43385,0.083524,92.81,-0.40366,-0.728,0.55415,332.19,-0.17961,-0.53085,-0.82822,466.6
> view matrix models
> #6,0.89711,-0.43385,0.083524,97.105,-0.40366,-0.728,0.55415,324.17,-0.17961,-0.53085,-0.82822,540.06
> view matrix models
> #6,0.90776,-0.3963,0.13755,75.254,-0.40868,-0.76151,0.50308,343.61,-0.094627,-0.51288,-0.85323,523.34
> view matrix models
> #6,0.90776,-0.3963,0.13755,73.653,-0.40868,-0.76151,0.50308,333.63,-0.094627,-0.51288,-0.85323,520.58
> fitmap #6 inMap #4
Fit molecule 20230306-c3convREF22.pdb (#6) to map
cryosparc_P25_J607_006_volume_map_sharp.mrc z flip (#4) using 30024 atoms
average map value = 0.1077, steps = 344
shifted from previous position = 24.2
rotated from previous position = 29.3 degrees
atoms outside contour = 19640, contour level = 0.13798
Position of 20230306-c3convREF22.pdb (#6) relative to
cryosparc_P25_J607_006_volume_map_sharp.mrc z flip (#4) coordinates:
Matrix rotation and translation
0.55627597 -0.34166344 0.75751115 34.47320150
-0.70314512 -0.67934549 0.20994439 483.78617896
0.44288146 -0.64942729 -0.61814255 382.83538934
Axis -0.87337924 0.31975808 -0.36737375
Axis point 0.00000000 304.95827689 110.55152651
Rotation angle (degrees) 150.52914123
Shift along axis -16.05730889
> fitmap #6 inMap #5
Fit molecule 20230306-c3convREF22.pdb (#6) to map
cryosparc_P3_J115_map_sharp.mrc (#5) using 30024 atoms
average map value = 0.559, steps = 40
shifted from previous position = 0.107
rotated from previous position = 0.0971 degrees
atoms outside contour = 7346, contour level = 0.2381
Position of 20230306-c3convREF22.pdb (#6) relative to
cryosparc_P3_J115_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
0.99971508 -0.01901478 -0.01442887 -13.41554518
-0.01981887 -0.99813151 -0.05779888 431.83887957
-0.01330288 0.05806838 -0.99822397 404.99304006
Axis 0.99992871 -0.00971726 -0.00693926
Axis point 0.00000000 209.98486155 208.70774124
Rotation angle (degrees) 176.67855101
Shift along axis -20.42123163
> volume #5 color #ffb2ff80
> view matrix models
> #6,0.98467,-0.013002,-0.17396,21.463,0.088399,-0.8225,0.56185,241.81,-0.15038,-0.56862,-0.80874,533.85
> fitmap #6 inMap #5
Fit molecule 20230306-c3convREF22.pdb (#6) to map
cryosparc_P3_J115_map_sharp.mrc (#5) using 30024 atoms
average map value = 0.5591, steps = 56
shifted from previous position = 2.3
rotated from previous position = 0.00992 degrees
atoms outside contour = 7351, contour level = 0.2381
Position of 20230306-c3convREF22.pdb (#6) relative to
cryosparc_P3_J115_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
0.99971339 -0.01914430 -0.01437507 -13.39873883
-0.01994638 -0.99812319 -0.05789853 431.88948106
-0.01323967 0.05816867 -0.99821897 404.94860164
Axis 0.99992828 -0.00978161 -0.00691000
Axis point 0.00000000 210.00029855 208.69731479
Rotation angle (degrees) 176.67281133
Shift along axis -20.42054848
> select add #6
30024 atoms, 30641 bonds, 9 pseudobonds, 3812 residues, 2 models selected
> select subtract #6
Nothing selected
> show #5-6 target ab
> style #5-6 stick
Changed 30024 atom styles
> volume #5 level 0.2882
> color #5-6 byhetero
> open
> "/Users/karlaivettedelaobecerra/Library/Containers/com.apple.mail/Data/Library/Mail
> Downloads/31DF5541-D7BD-4B9C-99D6-9B5197D0A987/2023C3convModelAngfittedP3J115-coot-0.pdb"
Summary of feedback from opening
/Users/karlaivettedelaobecerra/Library/Containers/com.apple.mail/Data/Library/Mail
Downloads/31DF5541-D7BD-4B9C-99D6-9B5197D0A987/2023C3convModelAngfittedP3J115-coot-0.pdb
---
warning | PDB SEQRES record for chain E is incomplete. Ignoring input sequence
records as basis for sequence.
Chain information for 2023C3convModelAngfittedP3J115-coot-0.pdb #7
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
> open /Users/karlaivettedelaobecerra/Desktop/20230306-c3convREF22.pdb
Chain information for 20230306-c3convREF22.pdb #8
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
F | No description available
G | No description available
H | No description available
> hide #!8 models
> hide #!6 models
> hide #!5 models
> hide #7 target a
> cartoon #7
> coulombic #!7
The following heavy (non-hydrogen) atoms are missing, which may result in
inaccurate electrostatics:
2023C3convModelAngfittedP3J115-coot-0.pdb #7/F PRO 508 OXT
2023C3convModelAngfittedP3J115-coot-0.pdb #7/B THR 654 OXT
2023C3convModelAngfittedP3J115-coot-0.pdb #7/C LEU 250 OXT
Traceback (most recent call last):
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/toolbar/tool.py", line 205, in callback
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 386, in run_provider
return api._api_caller.run_provider(api, session, name, mgr, **kw)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/__init__.py", line 1289, in run_provider
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/__init__.py", line 52, in run_provider
shortcuts.run_provider(session, name)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 1335, in run_provider
keyboard_shortcuts(session).try_shortcut(name)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 390, in try_shortcut
self.run_shortcut(keys)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 408, in run_shortcut
sc.run(self.session, status = self._enabled)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 327, in run
f(s)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 61, in func_plus_tip
func(cmd + " %s")(session)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 570, in run_expanded_command
run(session, cmd)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/shortcuts/shortcuts.py", line 513, in run
run_command(session, command, **kw)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/coulombic/cmd.py", line 88, in cmd_coulombic
assign_charges(session, needs_assignment, his_scheme, charge_method,
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/coulombic/coulombic.py", line 84, in assign_charges
cmd_addh(session, addh_structures, hbond=hbond)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/addh/cmd.py", line 66, in cmd_addh
add_h_func(session, structures, template=template, in_isolation=in_isolation,
**prot_schemes)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/addh/cmd.py", line 173, in hbond_add_hydrogens
add_hydrogens(session, atoms, type_info_for_atom, naming_schemas,
hydrogen_totals,
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/addh/hbond.py", line 248, in add_hydrogens
hbonds = find_hbonds(session, s_list, dist_slop=rec_dist_slop,
angle_slop=rec_angle_slop)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/hbonds/hbond.py", line 574, in find_hbonds
donor_hyds = hyd_positions(donor_atom)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/hbonds/hydpos.py", line 77, in hyd_positions
bond_positions(heavy_loc, geom, bond_len, bonded_locs, coplanar=coplanar))
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/bond_geom.py", line 73, in bond_positions
return planar_pos(bondee, bonded, bond_len, coplanar, toward, away, toward2,
away2)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/bond_geom.py", line 129, in planar_pos
pos = angle_pos(bondee, cur_bonded[0], bond_len, 120.0, coplanar)
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/bond_geom.py", line 231, in angle_pos
raise ValueError("More than 2 coplanar positions specified!")
ValueError: More than 2 coplanar positions specified!
ValueError: More than 2 coplanar positions specified!
File
"/private/var/folders/qn/1085xfxs3g15rmlh3q7t_w8w0000gn/T/AppTranslocation/176412EF-9F6E-400C-B8EB-4832EC1F9ACD/d/ChimeraX-1.6-rc2023.04.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/bond_geom.py", line 231, in angle_pos
raise ValueError("More than 2 coplanar positions specified!")
See log for complete Python traceback.
Unsupported scale factor (0.000000) detected on Display0
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6rc202304072249 (2023-04-07)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/karlaivettedelaobecerra/Documents/For_Mac/C5PAPER/C5B3G8_FINAL/C5-UC5Nb1-UC5Nb2.pdb
Chain information for C5-UC5Nb1-UC5Nb2.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
> open
> /Users/karlaivettedelaobecerra/Downloads/C5-UC5Nb1-UC5Nb2-Final1-coot-0.pdb
Chain information for C5-UC5Nb1-UC5Nb2-Final1-coot-0.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> open
> /Users/karlaivettedelaobecerra/Documents/For_Mac/C5PAPER/C5B3G8_FINAL/C5-UC5Nb1-UC5Nb2-Final1-coot-0.pdb
Chain information for C5-UC5Nb1-UC5Nb2-Final1-coot-0.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 7459.141.1
OS Loader Version: 7459.141.1
Software:
System Software Overview:
System Version: macOS 12.5 (21G72)
Kernel Version: Darwin 21.6.0
Time since boot: 147 days 4:58
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
HP E272q:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9
ChimeraX-AddH: 2.2.4
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6rc202304072249
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.2
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.3.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.2.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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