Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007ff847fa08c0 (most recent call first):
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in 
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


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{
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  "procRole" : "Background",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro16,1",
  "coalitionID" : 12118,
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    "build" : "22C65",
    "releaseType" : "User"
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  "captureTime" : "2023-07-21 15:53:03.1352 +1000",
  "incident" : "0F44A0ED-5DCD-4100-BAB6-6C00A12BEB97",
  "pid" : 38229,
  "cpuType" : "X86-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2023-07-20 22:07:10.4903 +1000",
  "procStartAbsTime" : 118429225768779,
  "procExitAbsTime" : 128440691017121,
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
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  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "E54DF0AE-6283-A5D6-C284-4F3DA370B02A",
  "throttleTimeout" : 2147483647,
  "wakeTime" : 15,
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  "sleepWakeUUID" : "EEE6AF2B-5889-4EC3-A53C-2B1265AAE852",
  "sip" : "enabled",
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  "ktriageinfo" : "VM - Waiting on busy page was interrupted\n",
  "vmregioninfo" : "0x18 is not in any region.  Bytes before following region: 140737487306728\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      shared memory            7ffffff00000-7ffffff01000 [    4K] r-x\/r-x SM=SHM  ",
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    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
    "name" : "QtGui"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4968267776,
    "size" : 638976,
    "uuid" : "7175bc4c-ca2f-30b6-9734-062b84bd0ae2",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
    "name" : "libqcocoa.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64h",
    "base" : 140703202852864,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 4825088,
    "uuid" : "beb5fc0b-7196-3c1d-a59a-f62ada98f592",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "1953.300"
  },
  {
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    "arch" : "x86_64",
    "base" : 140703218028544,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.Foundation",
    "size" : 10559479,
    "uuid" : "ab5f8db8-b03b-33b6-98f7-ffaec27a8eab",
    "path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
    "name" : "Foundation",
    "CFBundleVersion" : "1953.300"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703254806528,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.AppKit",
    "size" : 16809984,
    "uuid" : "00f4aa78-a19f-3a8e-9650-9f90b7beefd6",
    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
    "CFBundleVersion" : "2299.30.116"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703283171328,
    "CFBundleShortVersionString" : "1.600.0",
    "CFBundleIdentifier" : "com.apple.SkyLight",
    "size" : 4104180,
    "uuid" : "d7d965b3-c53a-3215-98a0-883823be50b2",
    "path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
    "name" : "SkyLight"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703200894976,
    "size" : 290804,
    "uuid" : "6282e528-6a67-334b-accf-1f8fd89369bd",
    "path" : "\/usr\/lib\/system\/libdispatch.dylib",
    "name" : "libdispatch.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703363887104,
    "CFBundleShortVersionString" : "2.1.1",
    "CFBundleIdentifier" : "com.apple.HIToolbox",
    "size" : 3112958,
    "uuid" : "db45022f-3922-35b3-9a06-377f66ed0fbe",
    "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    "name" : "HIToolbox"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4549931008,
    "CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
    "CFBundleIdentifier" : "org.python.python",
    "size" : 2527232,
    "uuid" : "ef9cc1f4-5991-3213-9a9e-e68c578b6c1b",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
    "name" : "Python",
    "CFBundleVersion" : "3.9.11"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4541829120,
    "CFBundleShortVersionString" : "1.6.1",
    "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
    "size" : 4096,
    "uuid" : "5df621ee-554e-36a8-b448-93b2334e5480",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
    "name" : "ChimeraX",
    "CFBundleVersion" : "1.6.1.0"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703199096832,
    "size" : 609392,
    "uuid" : "bb7a0970-8c62-3dce-a7a2-5cec9c501f11",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5326241792,
    "size" : 174571520,
    "uuid" : "473ca65c-6149-3bfa-a88b-95ac735bcd3b",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4658839552,
    "size" : 64028672,
    "uuid" : "24c9d5c5-4854-3af4-9550-cb0204044dfa",
    "path" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  }
],
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=14.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=14.0G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG backing stores                 11.0M       13 \nCG image                           448K       38 \nColorSync                          248K       29 \nCoreAnimation                      356K       31 \nCoreGraphics                        16K        3 \nCoreUI image data                 4508K       33 \nFoundation                          36K        2 \nIOKit                             23.3M        3 \nKernel Alloc Once                    8K        1 \nMALLOC                            13.3G     1099 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)\nMach message                        16K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        116K       29 \nStack                            150.2M       30 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      203.1M      247 \nVM_ALLOCATE (reserved)           128.0M        1         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            47.7M      766 \n__DATA_CONST                      53.7M      397 \n__DATA_DIRTY                      1833K      230 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__LINKEDIT                       212.9M      150 \n__OBJC_RO                         65.4M        1 \n__OBJC_RW                         1988K        2 \n__TEXT                           934.6M      769 \ndyld private memory                288K        3 \nmapped file                      238.4M       74 \nshared memory                     3524K       34 \n===========                     =======  ======= \nTOTAL                             15.6G     4010 \nTOTAL, minus reserved VM space    15.2G     4010 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "6246d6a916a70b047e454124",
      "factorPackIds" : {

      },
      "deploymentId" : 240000010
    },
    {
      "rolloutId" : "60356660bbe37970735c5624",
      "factorPackIds" : {

      },
      "deploymentId" : 240000027
    }
  ],
  "experiments" : [
    {
      "treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3",
      "experimentId" : "6317d2003d24842ff850182a",
      "deploymentId" : 400000013
    },
    {
      "treatmentId" : "8ca8349c-e2bc-482c-9ca7-3907b48a5341",
      "experimentId" : "648b5a581b04c12d4127bbb6",
      "deploymentId" : 400000001
    }
  ]
},
  "reportNotes" : [
  "dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 6E7F

Summary of feedback from opening 6E7F fetched from pdb  
---  
notes | Fetching compressed mmCIF 6e7f from
http://files.rcsb.org/download/6e7f.cif  
Fetching CCD SO4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif  
  
6e7f title:  
Crystal Structure of Human Inositol Polyphosphate Multikinase (IPMK) Catalytic
Core Domain [more info...]  
  
Chain information for 6e7f #1  
---  
Chain | Description | UniProt  
A B | Inositol polyphosphate multikinase | IPMK_HUMAN 70-363 374-416  
  
Non-standard residues in 6e7f #1  
---  
SO4 — sulfate ion  
  
6e7f mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_defined_assembly  
  

> set bgColor white

> rainbow

> select /B

1963 atoms, 1972 bonds, 2 pseudobonds, 276 residues, 2 models selected  

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

Alignment identifier is 1/B  

> close session

> open /Users/hanadihoblos/Downloads/AF-Q8NFU5-F1-model_v4.pdb

AF-Q8NFU5-F1-model_v4.pdb title:  
Alphafold monomer V2.0 prediction for inositol polyphosphate multikinase
(Q8NFU5) [more info...]  
  
Chain information for AF-Q8NFU5-F1-model_v4.pdb #1  
---  
Chain | Description | UniProt  
A | inositol polyphosphate multikinase | IPMK_HUMAN 1-416  
  

> set bgColor white

> rainbow

Alignment identifier is 1/A  

> select /A:1-3

20 atoms, 19 bonds, 3 residues, 1 model selected  

> select /A:1-157

1226 atoms, 1266 bonds, 157 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-58

427 atoms, 441 bonds, 58 residues, 1 model selected  

> hide sel cartoons

> select /A:415-416

17 atoms, 16 bonds, 2 residues, 1 model selected  

> select /A:301-416

932 atoms, 950 bonds, 116 residues, 1 model selected  

> select /A:416

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:351-416

532 atoms, 543 bonds, 66 residues, 1 model selected  

> select /A:416

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:375-416

339 atoms, 345 bonds, 42 residues, 1 model selected  

> hide sel cartoons

> show sel cartoons

> select /A:151-152

18 atoms, 18 bonds, 2 residues, 1 model selected  

> select /A:151-259

901 atoms, 923 bonds, 109 residues, 1 model selected  

> select /A:387

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:385-387

24 atoms, 24 bonds, 3 residues, 1 model selected  

> hbonds sel reveal true

3 hydrogen bonds found  

> open 6E7F

6e7f title:  
Crystal Structure of Human Inositol Polyphosphate Multikinase (IPMK) Catalytic
Core Domain [more info...]  
  
Chain information for 6e7f #2  
---  
Chain | Description | UniProt  
A B | Inositol polyphosphate multikinase | IPMK_HUMAN 70-363 374-416  
  
Non-standard residues in 6e7f #2  
---  
SO4 — sulfate ion  
  
6e7f mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_defined_assembly  
  

> ui tool show Matchmaker

> matchmaker #!2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker AF-Q8NFU5-F1-model_v4.pdb, chain A (#1) with 6e7f, chain B (#2),
sequence alignment score = 1183.7  
RMSD between 199 pruned atom pairs is 0.641 angstroms; (across all 234 pairs:
2.191)  
  

> matchmaker #!2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker AF-Q8NFU5-F1-model_v4.pdb, chain A (#1) with 6e7f, chain B (#2),
sequence alignment score = 1183.7  
RMSD between 199 pruned atom pairs is 0.641 angstroms; (across all 234 pairs:
2.191)  
  

> select #2/A#2/B

3923 atoms, 3951 bonds, 4 pseudobonds, 544 residues, 2 models selected  

> color (#!2 & sel) medium blue

> color (#!2 & sel) cornflower blue

> select clear

> select #1/A

3328 atoms, 3412 bonds, 3 pseudobonds, 416 residues, 2 models selected  

> color (#!1 & sel) light gray

Destroying pre-existing alignment with identifier 1/A  
Alignment identifier is 1/A  

> select clear

> select Mg

Nothing selected  

> select clear

> color bynucleotide

> select

7251 atoms, 7363 bonds, 7 pseudobonds, 960 residues, 4 models selected  

> color sel bynucleotide

> coulombic sel

The following heavy (non-hydrogen) atoms are missing, which may result in
inaccurate electrostatics:  
6e7f #2/B GLU 172 OE2  
6e7f #2/B GLU 172 CG  
6e7f #2/B GLU 172 CB  
6e7f #2/B GLU 172 CD  
6e7f #2/B GLU 172 OE1  
6e7f #2/A GLU 172 OE2  
6e7f #2/A GLU 172 CG  
6e7f #2/A GLU 172 CB  
6e7f #2/A GLU 172 CD  
6e7f #2/A GLU 172 OE1  

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for AF-Q8NFU5-F1-model_v4.pdb_A SES surface #1.2: minimum,
-18.43, mean -0.54, maximum 14.41  
Coulombic values for 6e7f_A SES surface #2.2: minimum, -20.32, mean -0.85,
maximum 14.03  
Coulombic values for 6e7f_B SES surface #2.3: minimum, -18.16, mean -0.91,
maximum 14.38  
To also show corresponding color key, enter the above coulombic command and
add key true  

> hide sel surfaces

> select ::name="SO4"

15 atoms, 12 bonds, 3 residues, 1 model selected  

> color bfactor sel

15 atoms, 3 residues, atom bfactor range 65.4 to 170  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Assigning partial charges to residue SO4 (net charge -2) with am1-bcc method  
Running ANTECHAMBER command:
/Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/antechamber -ek
qm_theory='AM1', -i
/var/folders/xm/c_0yvjd567bc4mzn7n3bl9340000gn/T/tmpi3iptbof/ante.in.mol2 -fi
mol2 -o
/var/folders/xm/c_0yvjd567bc4mzn7n3bl9340000gn/T/tmpi3iptbof/ante.out.mol2 -fo
mol2 -c bcc -nc -2 -j 5 -s 2 -dr n  
(SO4) ``  
(SO4) `Welcome to antechamber 20.0: molecular input file processor.`  
(SO4) ``  
(SO4) `Info: Finished reading file
(/var/folders/xm/c_0yvjd567bc4mzn7n3bl9340000gn/T/tmpi3iptbof/ante.in.mol2);
atoms read (5), bonds read (4).`  
(SO4) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`  
(SO4) `Running:
/Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/bondtype -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`  
(SO4) ``  
(SO4) ``  
(SO4) `Running:
/Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/atomtype -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff`  
(SO4) `Info: Total number of electrons: 50; net charge: -2`  
(SO4) ``  
(SO4) `Running: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/sqm
-O -i sqm.in -o sqm.out`  
(SO4) ``  
(SO4) `Running:
/Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/am1bcc -i
ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p
/Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/dat/antechamber/BCCPARM.DAT
-s 2 -j 1`  
(SO4) ``  
(SO4) `Running:
/Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/atomtype -f ac -p
bcc -o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC`  
(SO4) ``  
Charges for residue SO4 determined  
Coulombic values for 6e7f_A SES surface #2.4: minimum, -15.22, mean -13.95,
maximum -11.20  
Coulombic values for 6e7f_B SES surface #2.5: minimum, -17.01, mean -15.10,
maximum -11.83  
To also show corresponding color key, enter the above coulombic command and
add key true  

> coulombic sel

Coulombic values for 6e7f_A SES surface #2.4: minimum, -15.22, mean -13.95,
maximum -11.20  
Coulombic values for 6e7f_B SES surface #2.5: minimum, -17.01, mean -15.10,
maximum -11.83  
To also show corresponding color key, enter the above coulombic command and
add key true  

> style sel sphere

Changed 15 atom styles  

> mlp sel

mlp: no amino acids specified  

> mlp sel

mlp: no amino acids specified  

> color sel byhetero

> select clear

> select methyl

476 atoms, 284 residues, 2 models selected  

> select clear

> select Mg

Nothing selected  

> select S

34 atoms, 34 residues, 2 models selected  

> select clear

> select ::name="MET"

160 atoms, 140 bonds, 20 residues, 2 models selected  

> select #1/A:130

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:130

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hbonds sel reveal true

4 hydrogen bonds found  

> hbonds sel reveal true

4 hydrogen bonds found  

> select #1/A:387

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #1/A:385-387

24 atoms, 24 bonds, 3 residues, 1 model selected  

> select #1/A:387

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #1/A:387

5 atoms, 4 bonds, 1 residue, 1 model selected  

Unsupported scale factor (0.000000) detected on Display0  

QPainter::begin: Paint device returned engine == 0, type: 3  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.9.51
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,1
      Processor Name: 8-Core Intel Core i9
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 256 KB
      L3 Cache: 16 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0)
      OS Loader Version: 564.40.4~55

Software:

    System Software Overview:

      System Version: macOS 13.1 (22C65)
      Kernel Version: Darwin 22.2.0
      Time since boot: 5 days, 1 hour, 14 minutes

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0002
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3

    AMD Radeon Pro 5500M:

      Chipset Model: AMD Radeon Pro 5500M
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x7340
      Revision ID: 0x0040
      ROM Revision: 113-D3220E-190
      VBIOS Version: 113-D32206U1-020
      Option ROM Version: 113-D32206U1-020
      EFI Driver Version: 01.A1.190
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 3072 x 1920 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Display Asleep: Yes
          Connection Type: Internal
        LG HDR 4K:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Display Asleep: Yes
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 2.55


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0