![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9443 closed defect (nonchimerax)
Graphics crash, macOS 11.7.7, Iris Plus Graphics 650
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x0000000115179e00 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 497 in swap_buffers
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 191 in draw
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [6311]
Path: /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.6.1 (1.6.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [6311]
User ID: 501
Date/Time: 2023-07-23 14:37:12.958 -0500
OS Version: macOS 11.7.7 (20G1345)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: 98762940-2B22-C8FA-6D8C-2A42E3831126
Sleep/Wake UUID: B463797B-9FBA-4217-BED4-7A5C436622F1
Time Awake Since Boot: 900000 seconds
Time Since Wake: 12000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2042390e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff204525bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20336bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20497d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff203a7406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff463b5096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff463ac21c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5faf6d09 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff463ad72d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ed87dba IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ed87bce intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5eead9f8 gldPresentFramebufferData + 120
13 GLEngine 0x00007fff6bba4a91 glSwap_Exec + 97
14 com.apple.opengl 0x00007fff6b96a2eb CGLFlushDrawable + 59
15 com.apple.AppKit 0x00007fff230c9300 -[NSOpenGLContext flushBuffer] + 20
16 libqcocoa.dylib 0x0000000114966743 0x1148ee000 + 493379
17 QtGui 0x0000000112f63584 QOpenGLContext::swapBuffers(QSurface*) + 212
18 QtGui.abi3.so 0x000000011356550f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95
19 org.python.python 0x000000010630871d cfunction_call + 125
20 org.python.python 0x00000001062c95b7 _PyObject_MakeTpCall + 359
21 org.python.python 0x00000001063a1e9c call_function + 876
22 org.python.python 0x000000010639f2a2 _PyEval_EvalFrameDefault + 25554
23 org.python.python 0x00000001063a2b03 _PyEval_EvalCode + 2611
24 org.python.python 0x00000001062c9cb1 _PyFunction_Vectorcall + 289
25 org.python.python 0x00000001063a1e0c call_function + 732
26 org.python.python 0x000000010639f27e _PyEval_EvalFrameDefault + 25518
27 org.python.python 0x00000001062c9d28 function_code_fastcall + 104
28 org.python.python 0x00000001063a1e0c call_function + 732
29 org.python.python 0x000000010639f27e _PyEval_EvalFrameDefault + 25518
30 org.python.python 0x00000001063a2b03 _PyEval_EvalCode + 2611
31 org.python.python 0x00000001062c9cb1 _PyFunction_Vectorcall + 289
32 org.python.python 0x00000001062cbd6a method_vectorcall + 202
33 org.python.python 0x00000001063a1e0c call_function + 732
34 org.python.python 0x000000010639f3e8 _PyEval_EvalFrameDefault + 25880
35 org.python.python 0x00000001062c9d28 function_code_fastcall + 104
36 org.python.python 0x00000001063a1e0c call_function + 732
37 org.python.python 0x000000010639f27e _PyEval_EvalFrameDefault + 25518
38 org.python.python 0x00000001062c9d28 function_code_fastcall + 104
39 org.python.python 0x00000001062cbdb2 method_vectorcall + 274
40 QtCore.abi3.so 0x000000010f8dd298 PyQtSlot::call(_object*, _object*) const + 40
41 QtCore.abi3.so 0x000000010f8dd19a PyQtSlot::invoke(void**, _object*, void*, bool) const + 362
42 QtCore.abi3.so 0x000000010f8de1a5 PyQtSlotProxy::unislot(void**) + 85
43 QtCore.abi3.so 0x000000010f8de11a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
44 QtCore 0x000000010fbc72be 0x10fb0a000 + 774846
45 QtCore 0x000000010fbdb80a QTimer::timerEvent(QTimerEvent*) + 202
46 QtCore.abi3.so 0x000000010f7cf9a9 sipQTimer::timerEvent(QTimerEvent*) + 121
47 QtCore 0x000000010fbbf52d QObject::event(QEvent*) + 109
48 QtCore.abi3.so 0x000000010f7cf82a sipQTimer::event(QEvent*) + 186
49 QtWidgets 0x00000001125e29c7 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
50 QtWidgets 0x00000001125e390c QApplication::notify(QObject*, QEvent*) + 508
51 QtWidgets.abi3.so 0x0000000112131186 sipQApplication::notify(QObject*, QEvent*) + 230
52 QtCore 0x000000010fb7812a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
53 QtCore 0x000000010fd01c21 QTimerInfoList::activateTimers() + 993
54 libqcocoa.dylib 0x0000000114903aa5 0x1148ee000 + 88741
55 com.apple.CoreFoundation 0x00007fff2054acdc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
56 com.apple.CoreFoundation 0x00007fff2054ac44 __CFRunLoopDoSource0 + 180
57 com.apple.CoreFoundation 0x00007fff2054aa26 __CFRunLoopDoSources0 + 340
58 com.apple.CoreFoundation 0x00007fff205493ec __CFRunLoopRun + 893
59 com.apple.CoreFoundation 0x00007fff205489ac CFRunLoopRunSpecific + 563
60 com.apple.HIToolbox 0x00007fff287941f3 RunCurrentEventLoopInMode + 292
61 com.apple.HIToolbox 0x00007fff28793f55 ReceiveNextEventCommon + 587
62 com.apple.HIToolbox 0x00007fff28793cf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
63 com.apple.AppKit 0x00007fff22d52ad2 _DPSNextEvent + 864
64 com.apple.AppKit 0x00007fff22d512a5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
65 com.apple.AppKit 0x00007fff22d435c9 -[NSApplication run] + 586
66 libqcocoa.dylib 0x0000000114904753 0x1148ee000 + 91987
67 QtCore 0x000000010fb814b6 QEventLoop::exec(QFlags) + 486
68 QtCore 0x000000010fb78725 QCoreApplication::exec() + 133
69 QtWidgets.abi3.so 0x000000011221d54a meth_QApplication_exec(_object*, _object*) + 90
70 org.python.python 0x000000010630871d cfunction_call + 125
71 org.python.python 0x00000001062c95b7 _PyObject_MakeTpCall + 359
72 org.python.python 0x00000001063a1e9c call_function + 876
73 org.python.python 0x000000010639f2a2 _PyEval_EvalFrameDefault + 25554
74 org.python.python 0x00000001062c9d28 function_code_fastcall + 104
75 org.python.python 0x00000001062cbd6a method_vectorcall + 202
76 org.python.python 0x00000001063a1e0c call_function + 732
77 org.python.python 0x000000010639f2a2 _PyEval_EvalFrameDefault + 25554
78 org.python.python 0x00000001063a2b03 _PyEval_EvalCode + 2611
79 org.python.python 0x00000001062c9cb1 _PyFunction_Vectorcall + 289
80 org.python.python 0x00000001063a1e0c call_function + 732
81 org.python.python 0x000000010639f34b _PyEval_EvalFrameDefault + 25723
82 org.python.python 0x00000001063a2b03 _PyEval_EvalCode + 2611
83 org.python.python 0x0000000106398dab PyEval_EvalCode + 139
84 org.python.python 0x0000000106395c12 builtin_exec + 626
85 org.python.python 0x0000000106308023 cfunction_vectorcall_FASTCALL + 195
86 org.python.python 0x00000001063a1e0c call_function + 732
87 org.python.python 0x000000010639f34b _PyEval_EvalFrameDefault + 25723
88 org.python.python 0x00000001063a2b03 _PyEval_EvalCode + 2611
89 org.python.python 0x00000001062c9cb1 _PyFunction_Vectorcall + 289
90 org.python.python 0x00000001063a1e0c call_function + 732
91 org.python.python 0x000000010639f34b _PyEval_EvalFrameDefault + 25723
92 org.python.python 0x00000001063a2b03 _PyEval_EvalCode + 2611
93 org.python.python 0x00000001062c9cb1 _PyFunction_Vectorcall + 289
94 org.python.python 0x0000000106408870 pymain_run_module + 208
95 org.python.python 0x0000000106407f87 Py_RunMain + 1431
96 org.python.python 0x000000010640858f pymain_main + 223
97 org.python.python 0x000000010640849b Py_Main + 43
98 edu.ucsf.cgl.ChimeraX 0x000000010627cdc8 main + 120
99 libdyld.dylib 0x00007fff2046df3d start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff204261b2 kevent64 + 10
1 QtWebEngineCore 0x000000011968f3ca 0x1151ba000 + 72176586
2 QtWebEngineCore 0x000000011968f26f 0x1151ba000 + 72176239
3 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
4 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
5 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
6 QtWebEngineCore 0x000000011963caad 0x1151ba000 + 71838381
7 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
8 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
9 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001196494af 0x1151ba000 + 71890095
4 QtWebEngineCore 0x000000011964a057 0x1151ba000 + 71893079
5 QtWebEngineCore 0x0000000119649afd 0x1151ba000 + 71891709
6 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
7 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff204261b2 kevent64 + 10
1 QtWebEngineCore 0x000000011968f3ca 0x1151ba000 + 72176586
2 QtWebEngineCore 0x000000011968f26f 0x1151ba000 + 72176239
3 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
4 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
5 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
6 QtWebEngineCore 0x0000000116e73572 0x1151ba000 + 30119282
7 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
8 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
9 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x000000011968871f 0x1151ba000 + 72148767
4 QtWebEngineCore 0x00000001195b3e69 0x1151ba000 + 71278185
5 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
6 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
7 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
8 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
9 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
10 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001196494af 0x1151ba000 + 71890095
4 QtWebEngineCore 0x000000011964a057 0x1151ba000 + 71893079
5 QtWebEngineCore 0x0000000119649b8d 0x1151ba000 + 71891853
6 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
7 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x000000011968871f 0x1151ba000 + 72148767
4 QtWebEngineCore 0x00000001195b3e69 0x1151ba000 + 71278185
5 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
6 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
7 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
8 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
9 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
10 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff204261b2 kevent64 + 10
1 QtWebEngineCore 0x000000011968f3ca 0x1151ba000 + 72176586
2 QtWebEngineCore 0x000000011968f26f 0x1151ba000 + 72176239
3 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
4 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
5 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
6 QtWebEngineCore 0x000000011c2b5882 0x1151ba000 + 118470786
7 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
8 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
9 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff2041fcbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20452e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000119680e22 0x1151ba000 + 72117794
3 QtWebEngineCore 0x000000011b8c3505 0x1151ba000 + 108041477
4 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
5 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 9:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001196494af 0x1151ba000 + 71890095
4 QtWebEngineCore 0x000000011964a057 0x1151ba000 + 71893079
5 QtWebEngineCore 0x0000000119649bbd 0x1151ba000 + 71891901
6 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
7 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x000000011968871f 0x1151ba000 + 72148767
4 QtWebEngineCore 0x00000001195b3e69 0x1151ba000 + 71278185
5 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
6 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
7 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
8 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
9 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
10 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001195b3e08 0x1151ba000 + 71278088
4 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
5 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
6 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
7 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
8 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
9 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x00007fff204261b2 kevent64 + 10
1 QtWebEngineCore 0x000000011968f3ca 0x1151ba000 + 72176586
2 QtWebEngineCore 0x000000011968f26f 0x1151ba000 + 72176239
3 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
4 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
5 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
6 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
7 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
8 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x000000011968871f 0x1151ba000 + 72148767
4 QtWebEngineCore 0x00000001195b3e69 0x1151ba000 + 71278185
5 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
6 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
7 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
8 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
9 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
10 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001196494af 0x1151ba000 + 71890095
4 QtWebEngineCore 0x000000011964a057 0x1151ba000 + 71893079
5 QtWebEngineCore 0x0000000119649bed 0x1151ba000 + 71891949
6 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
7 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x000000011968871f 0x1151ba000 + 72148767
4 QtWebEngineCore 0x00000001195b3e69 0x1151ba000 + 71278185
5 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
6 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
7 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
8 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
9 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
10 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 16:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001196494af 0x1151ba000 + 71890095
4 QtWebEngineCore 0x000000011964a057 0x1151ba000 + 71893079
5 QtWebEngineCore 0x0000000119649afd 0x1151ba000 + 71891709
6 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
7 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 17:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2054aebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2054959f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff205489ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22ed8b7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 18:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x000000011968871f 0x1151ba000 + 72148767
4 QtWebEngineCore 0x00000001195b3e69 0x1151ba000 + 71278185
5 QtWebEngineCore 0x000000011962fff3 0x1151ba000 + 71786483
6 QtWebEngineCore 0x00000001195e7a32 0x1151ba000 + 71490098
7 QtWebEngineCore 0x0000000119656a58 0x1151ba000 + 71944792
8 QtWebEngineCore 0x0000000119656bea 0x1151ba000 + 71945194
9 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
10 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x00007fff2041d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2041d60c mach_msg + 60
2 QtWebEngineCore 0x0000000119688933 0x1151ba000 + 72149299
3 QtWebEngineCore 0x00000001196494af 0x1151ba000 + 71890095
4 QtWebEngineCore 0x0000000119649d0c 0x1151ba000 + 71892236
5 QtWebEngineCore 0x0000000119649b2d 0x1151ba000 + 71891757
6 QtWebEngineCore 0x0000000119682458 0x1151ba000 + 72123480
7 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff2041fcbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20452e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x00000001070f323f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204528fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2044e443 thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff2044e420 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff2044e420 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff2044e420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000115179e00 rcx: 0x00007f9766155a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007f9766155a80 rsp: 0x00007f9766155a58
r8: 0x00007f9766155f48 r9: 0x059d12667d100cc1 r10: 0x0000000115179e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007f9768430518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2042390e rfl: 0x0000000000000246 cr2: 0x00007f9766391be0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
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0x7fff437ca000 - 0x7fff437e2fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43864000 - 0x7fff43ad7fff com.apple.RawCamera.bundle (9.10.0 - 1450.3.1) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44340000 - 0x7fff44344fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45cbb000 - 0x7fff45cbefff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff463aa000 - 0x7fff463b5fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff479df000 - 0x7fff47a20fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff4826e000 - 0x7fff48289fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff51472000 - 0x7fff5149ffff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff514a0000 - 0x7fff514bafff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff514bb000 - 0x7fff5155afff com.apple.Symbolication (12.5 - 64544.70.3) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff5174a000 - 0x7fff5174dfff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53de2000 - 0x7fff53e18fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff5540e000 - 0x7fff55411fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5db49000 - 0x7fff5dfd4fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5ed6d000 - 0x7fff5fd54fff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff69506000 - 0x7fff6950afff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6b951000 - 0x7fff6b957fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6b958000 - 0x7fff6b95cfff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6b95d000 - 0x7fff6b96cfff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6b96d000 - 0x7fff6b96ffff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6b970000 - 0x7fff6b978fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6b979000 - 0x7fff6b9acfff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6b9ad000 - 0x7fff6b9e9fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6b9ea000 - 0x7fff6bb7dfff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bb7e000 - 0x7fff6bb88fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bb89000 - 0x7fff6bd06fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bd07000 - 0x7fff6bd2ffff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6cfc8000 - 0x7fff6d020fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e0ca000 - 0x7fff6e0d1fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e0d2000 - 0x7fff6e1b9fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f73f000 - 0x7fff6f751fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73a6f000 - 0x7fff73a7afff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73c90000 - 0x7fff73ca8fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff775b7000 - 0x7fff775befff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=13.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=13.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 372K 26
CoreAnimation 100K 13
CoreGraphics 12K 2
CoreUI image data 3056K 24
Foundation 32K 2
IOKit 7940K 1
Kernel Alloc Once 8K 1
MALLOC 13.4G 741
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 92K 23
Stack 154.7M 24
Stack Guard 56.0M 1
VM_ALLOCATE 85.0M 103
__DATA 36.4M 636
__DATA_CONST 27.6M 309
__DATA_DIRTY 1707K 212
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.9M 265
__OBJC_RO 70.2M 1
__OBJC_RW 2496K 2
__TEXT 676.7M 621
__UNICODE 588K 1
mapped file 278.4M 60
shared memory 2956K 23
=========== ======= =======
TOTAL 15.6G 3121
TOTAL, minus reserved VM space 15.3G 3121
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/aprilguoyue/Desktop/outputs/Image_thhhl_0.pdb
Chain information for Image_thhhl_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> select add #1
1244 atoms, 1241 bonds, 1 pseudobond, 311 residues, 2 models selected
> color (#!1 & sel) lime
> select subtract #1
Nothing selected
> open 6e3k
6e3k title:
Interferon γ signalling complex with IFNGR1 and IFNGR2 [more info...]
Chain information for 6e3k #2
---
Chain | Description | UniProt
A B | Interferon gamma | IFNG_HUMAN 1-133
C D | Interferon gamma receptor 1 | INGR1_HUMAN 1-229
E I | Interferon gamma receptor 2 | INGR2_HUMAN 28-247
Non-standard residues in 6e3k #2
---
BMA — beta-D-mannopyranose
CYS — cysteine
EDO — 1,2-ethanediol (ethylene glycol)
MAN — alpha-D-mannopyranose
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose
> show cartoons
> hide atoms
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Image_thhhl_0.pdb, chain A (#1) with 6e3k, chain C (#2), sequence
alignment score = 1031.3
RMSD between 206 pruned atom pairs is 0.168 angstroms; (across all 207 pairs:
0.266)
> select #2/E#2/I
3502 atoms, 3605 bonds, 442 residues, 1 model selected
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/aprilguoyue/Desktop/outputs/Image_thhhl_0.pdb
Chain information for Image_thhhl_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
OpenGL version: 4.1 INTEL-16.5.14
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 3.1 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 512.0.0.0.0
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 11.7.7 (20G1345)
Kernel Version: Darwin 20.6.0
Time since boot: 30 days 21:21
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 2 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.7.7, Iris Plus Graphics 650 |
Note:
See TracTickets
for help on using tickets.
Apple Intel graphics driver crash.
Unfortunately Apple's Intel graphics drivers are unstable and crash. Nothing we can do to fix this. The Apple M1/M2 graphics driver are very stable. Details here
https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#maccrash