Opened 2 years ago

Closed 2 years ago

#9246 closed defect (duplicate)

Item table column sorting: 'QCxTableModel' object has no attribute 'sourceModel'

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: General Controls Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-13.3.1-arm64-arm-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel 2 .cxs"

Log from Sat Jun 24 00:48:56 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel .cxs"

Log from Sat Jun 24 00:39:15 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel .cxs"

Log from Fri Jun 23 19:45:10 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Updating list of available bundles failed: Internal Server Error  

> open "/Users/nitsanyehishalom/Library/CloudStorage/OneDrive-SharedLibraries-
> Technion/Marx Ailie - Densities/GFP/Structure25.pdb" format pdb

Chain information for Structure25.pdb #1  
---  
Chain | Description  
A B | No description available  
  

> select backbone

1816 atoms, 1812 bonds, 454 residues, 1 model selected  

> hide ~sel

> select /A:145

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

158 atoms, 161 bonds, 19 residues, 1 model selected  

> hide ~sel

[Repeated 1 time(s)]

> hide ~sel ribbons

> show

> show sel

> hide sel ribbons

> select clear

[Repeated 1 time(s)]

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

158 atoms, 161 bonds, 19 residues, 1 model selected  

> select down

6 atoms, 5 bonds, 1 residue, 1 model selected  
Drag select of 33 atoms, 32 bonds  

> help

> select :144-145

30 atoms, 26 bonds, 6 residues, 1 model selected  

> select :144-146

51 atoms, 48 bonds, 9 residues, 1 model selected  

> select :142-143

40 atoms, 38 bonds, 6 residues, 1 model selected  

> select :142-144

57 atoms, 54 bonds, 9 residues, 1 model selected  

> select :142-145

70 atoms, 66 bonds, 12 residues, 1 model selected  

> hide ~sel

> select clear

> dihedral true

Unknown command: dihedral true  

> help

Downloading bundle ChimeraX_QScore-1.0-cp39-cp39-macosx_10_13_universal2.whl  

Errors may have occurred when running pip:  

pip standard error:  
\---  
  
[notice] A new release of pip available: 22.2.2 -> 23.1.2  
[notice] To update, run:
/Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX -m pip install
--upgrade pip  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing
/Users/nitsanyehishalom/Downloads/ChimeraX_QScore-1.0-cp39-cp39-macosx_10_13_universal2.whl  
Requirement already satisfied: ChimeraX-Core>=1.5 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-QScore==1.0) (1.5)  
Installing collected packages: ChimeraX-QScore  
Successfully installed ChimeraX-QScore-1.0  
\---  

Successfully installed ChimeraX-QScore-1.0  
Installed ChimeraX-QScore (1.0)  

> ui tool show "Model-map Q-Score"

> style #1 stick

Changed 3858 atom styles  

> color #1 byhetero

Must select a model and map first!  
[Repeated 1 time(s)]

> label #1 residues attribute phi

> undo

> angle

Missing or invalid "objects" argument: empty atom specifier  

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> angle sel

Must specify exactly 3 atoms/centroids or two measurable objects (e.g.
axes/planes)  

> select :143

23 atoms, 22 bonds, 3 residues, 1 model selected  

> angels sel

Unknown command: angels sel  

> angle sel

Must specify exactly 3 atoms/centroids or two measurable objects (e.g.
axes/planes)  

> select clear

Drag select of 33 atoms, 33 bonds  

> angle sel

Must specify exactly 3 atoms/centroids or two measurable objects (e.g.
axes/planes)  

> select clear

> style ball

Changed 3858 atom styles  

> cartoon style modeHelix tube sides 20

> ui tool show Axes/Planes/Centroids

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select /A:143@N

1 atom, 1 residue, 1 model selected  

> select add /A:143@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:143@C

3 atoms, 1 bond, 1 residue, 1 model selected  

> angle sel

Angle between /A PHE 143 N, /A PHE 143 CA, and /A PHE 143 C: 110.162  

> define plane sel

Plane 'plane' placed at [-21.40533333 25.574 15.30566667] with normal
[-0.48407451 -0.87205193 0.07209225] and radius 1.3  

> define centroid sel

Centroid 'centroid' placed at [-21.40533333 25.574 15.30566667]  
value: None default: None  

> define axis perHelix true name "helix axes"

Axis 'Structure25.pdb #!1/helix axes/chain A helix 1' centered at
[-17.27238126 -1.29708508 32.03992106] with direction [-0.74104052 0.63631348
0.21439241], radius 1.19661, and length 5.35751  
Axis 'Structure25.pdb #!1/helix axes/chain A helix 2' centered at [-21.8315335
0.2968683 28.71759421] with direction [-0.80684425 0.44471499 -0.3888842 ],
radius 1.57558, and length 6.47536  
Axis 'Structure25.pdb #!1/helix axes/chain A helix 3' centered at
[-24.34518934 28.46343548 23.7800401 ] with direction [ 0.64493057 -0.42416072
0.6357297 ], radius 1.53514, and length 6.54968  
Axis 'Structure25.pdb #!1/helix axes/chain A helix 4' centered at
[-19.41641102 10.61622012 26.33971502] with direction [-0.36912945 -0.74637579
-0.55377488], radius 1.18606, and length 5.82732  
Axis 'Structure25.pdb #!1/helix axes/chain A helix 5' centered at [-9.44334259
1.73930308 23.72302123] with direction [0.14072585 0.44156178 0.88612608],
radius 1.54016, and length 10.3001  
Axis 'Structure25.pdb #!1/helix axes/chain A helix 6' centered at
[-14.67182631 6.50902984 31.34476511] with direction [-0.60790279 -0.70686576
0.3616559 ], radius 1.58684, and length 5.65226  
Axis 'Structure25.pdb #!1/helix axes/chain B helix 1' centered at [-9.82953682
24.26426795 -1.730028 ] with direction [-0.84576161 0.33702053 0.41364775],
radius 1.53574, and length 9.46359  
Axis 'Structure25.pdb #!1/helix axes/chain B helix 2' centered at [-29.9510665
3.57270637 0.6565128 ] with direction [ 0.90663197 -0.07806668 -0.41463727],
radius 1.54186, and length 6.44979  
Axis 'Structure25.pdb #!1/helix axes/chain B helix 3' centered at
[-15.26266442 15.38447193 0.91175775] with direction [-0.02827089 0.83810341
0.54477832], radius 1.18643, and length 5.73177  
Axis 'Structure25.pdb #!1/helix axes/chain B helix 4' centered at [-3.04470004
16.69078953 6.99650009] with direction [ 0.09342461 -0.47062789 -0.87737178],
radius 1.52068, and length 10.2336  
Axis 'Structure25.pdb #!1/helix axes/chain B helix 5' centered at [-7.94273645
15.6876803 -2.61308687] with direction [-0.07253961 -0.86943687 0.48868961],
radius 1.5623, and length 6.20119  

> select #1.2

1 model selected  

> select #1.4.11

1 model selected  

> close #1.2-3#1.4.1-11

Either three or four atoms must be selected!  

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@N

2 atoms, 1 residue, 1 model selected  

> select add /A:143@C

3 atoms, 1 residue, 1 model selected  
Choose exactly one axis or plane in table  

> define plane sel color #909090

Plane 'plane' placed at [-21.40533333 25.574 15.30566667] with normal
[-0.48407451 -0.87205193 0.07209225] and radius 1.3  

> select clear

> label hide

Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword  

> hide label

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> help

> label delete

> select #1.2

1 model selected  

> select clear

> select /A:143@C

1 atom, 1 residue, 1 model selected  

> select add /A:144@N

2 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

3 atoms, 2 residues, 1 model selected  

> define plane sel color #909090

Plane 'plane' placed at [-19.11866667 24.97966667 14.887 ] with normal [
0.05701853 -0.68657749 0.72481738] and radius 1.3  

> select clear

value: None default: None  

> define axis #1.2 name normal padding 2.5

Plane normal for plane #1.2 centered at [-21.40533333 25.574 15.30566667] with
direction [-0.48407451 -0.87205193 0.07209225], radius 0.0637005, and length
1.27401  

> undo

> select #1.2.1

1 model selected  

> close #1.2.1

Need to select at least 3 atoms to define a plane  
[Repeated 1 time(s)]

> select /A:143@C

1 atom, 1 residue, 1 model selected  

> select add /A:144@N

2 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

3 atoms, 2 residues, 1 model selected  

> define plane sel color #909090 padding 4 thickness 0.15

Plane 'plane' placed at [-19.11866667 24.97966667 14.887 ] with normal [
0.05701853 -0.68657749 0.72481738] and radius 5.3  

> close #1.3

> select #1.2

1 model selected  

> select clear

> view #1.2 zalign #1.2

> turn y 90 center #1.2

> ui tool show "Side View"

plane #1.1 to plane #1.2: distance: 0.000Å; angle: 51.4°  

> close #1.1-2

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@N

2 atoms, 1 residue, 1 model selected  

> select add /A:143@C

3 atoms, 1 residue, 1 model selected  

> define plane sel color #909090 padding 1 thickness 0.15

Plane 'plane' placed at [-21.40533333 25.574 15.30566667] with normal
[-0.48407451 -0.87205193 0.07209225] and radius 2.3  

> close #1.1

> define plane sel color #909090 padding 1.5 thickness 0.15

Plane 'plane' placed at [-21.40533333 25.574 15.30566667] with normal
[-0.48407451 -0.87205193 0.07209225] and radius 2.8  

> close #1.1

> define plane sel color #909090 padding 1.1 thickness 0.15

Plane 'plane' placed at [-21.40533333 25.574 15.30566667] with normal
[-0.48407451 -0.87205193 0.07209225] and radius 2.4  

> close #1.1

> define plane sel color #909090 padding 0.5 thickness 0.15

Plane 'plane' placed at [-21.40533333 25.574 15.30566667] with normal
[-0.48407451 -0.87205193 0.07209225] and radius 1.8  

> rename #1.1 "Ca plane"

> select subtract /A:143@C

2 atoms, 1 residue, 1 model selected  

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select subtract /A:143@CA

Nothing selected  

> select add /A:144@N

1 atom, 1 bond, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 bond, 2 residues, 1 model selected  

> select add /A:144@CA

3 atoms, 1 bond, 2 residues, 1 model selected  

> select /A:144@N

1 atom, 1 residue, 1 model selected  

> select /A:143@C

1 atom, 1 residue, 1 model selected  

> select add /A:144@N

2 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

3 atoms, 2 residues, 1 model selected  

> define plane sel color #909090 padding 0.5 thickness 0.15

Plane 'plane' placed at [-19.11866667 24.97966667 14.887 ] with normal [
0.05701853 -0.68657749 0.72481738] and radius 1.8  

> color #1.2 #9090909f

> color #1.2 #9090909e

> color #1.2 #9090909d

> color #1.2 #9090909b

> color #1.2 #90909096

> color #1.2 #9090908f

> color #1.2 #9090908b

> color #1.2 #90909086

> color #1.2 #90909081

> color #1.2 #9090907b

> color #1.2 #90909075

> color #1.2 #90909073

> color #1.2 #90909071

> color #1.2 #90909072

> color #1.2 #90909073

> color #1.2 #90909074

> color #1.2 #90909076

> color #1.2 #90909079

> color #1.2 #9090907b

> color #1.2 #9090907d

> color #1.2 #9090907e

> color #1.2 #90909080

> color #1.2 #a1a09680

> color #1.2 #a1a09780

> color #1.2 #a1a09880

> color #1.2 #a19d9c80

> color #1.2 #a19ba180

> color #1.2 #9d98a180

> color #1.2 #9a94a180

> color #1.2 #928ba180

> color #1.2 #8d85a180

> color #1.2 #877fa180

> color #1.2 #847ba180

> color #1.2 #7f75a180

> color #1.2 #796ea180

> color #1.2 #7064a180

> color #1.2 #6a5da180

> color #1.2 #685aa180

> color #1.2 #6254a180

> color #1.2 #5d4ea180

> color #1.2 #5b4ca180

> color #1.2 #5647a180

> color #1.2 #5344a180

> color #1.2 #5142a180

> color #1.2 #4d3ea180

> color #1.2 #4b3ca180

> color #1.2 #4839a180

> color #1.2 #4537a180

> color #1.2 #4335a180

> color #1.2 #4133a180

> color #1.2 #4032a180

> color #1.2 #3f31a180

> color #1.2 #3f32a180

> color #1.2 #3f33a180

> color #1.2 #3e33a180

> color #1.2 #3e34a180

> color #1.2 #3e35a180

> color #1.2 #3d35a180

> color #1.2 #3c36a180

> color #1.2 #3a38a180

> color #1.2 #3938a180

> color #1.2 #393ba180

> color #1.2 #3a3da180

> color #1.2 #3a3ea180

> color #1.2 #3b3fa180

> color #1.2 #3c3fa180

> color #1.2 #3c3ea180

> color #1.2 #3d3ea180

> color #1.2 #3d3da180

> color #1.2 #3e3da180

> color #1.2 #3f3ea180

> color #1.2 #423ea180

> color #1.2 #443fa180

> color #1.2 #4640a180

> color #1.2 #4740a180

> color #1.2 #4841a180

> color #1.2 #4a41a180

> color #1.2 #4c42a180

> color #1.2 #4d42a180

> color #1.2 #4e42a180

> color #1.2 #4e43a180

> color #1.2 #5649a180

> color #1.2 #6256a180

> color #1.2 #6c62a180

> color #1.2 #8781a180

> color #1.2 #9fa19e80

> color #1.2 #9aa18e80

> color #1.2 #98a18480

> color #1.2 #95a17e80

> color #1.2 #94a17d80

> color #1.2 #94a17c80

> color #1.2 #93a17a80

> color #1.2 #8fa17680

> color #1.2 #8ba17380

> color #1.2 #7aa16380

> color #1.2 #6aa15680

> color #1.2 #5aa14980

> color #1.2 #4fa14180

> color #1.2 #40a13580

> color #1.2 #39a13080

> color #1.2 #32a12b80

> color #1.2 #31a12b80

> color #1.2 #2fa12980

> color #1.2 #2ea12980

> color #1.2 #2ea12880

> color #1.2 #2da12880

> color #1.2 #2ea12880

> color #1.2 #2ea12980

> select add #1.1

3 atoms, 2 residues, 2 models selected  

> color #1.1 #9ca19a

> color #1.1 #9ca19c

> color #1.1 #9ca0a1

> color #1.1 #999ca1

> color #1.1 #9498a1

> color #1.1 #8b90a1

> color #1.1 #838aa1

> color #1.1 #8088a1

> color #1.1 #7b84a1

> color #1.1 #737da1

> color #1.1 #6f79a1

> color #1.1 #6b76a1

> color #1.1 #6873a1

> color #1.1 #6671a1

> color #1.1 #6470a1

> color #1.1 #636fa1

> color #1.1 #636ea1

> color #1.1 #626da1

> color #1.1 #616da1

> color #1.1 #626da1

> color #1.1 #626ea1

> color #1.1 #636fa1

> color #1.1 #6471a1

> color #1.1 #6774a1

> color #1.1 #6876a1

> color #1.1 #6978a1

> color #1.1 #6a7aa1

> color #1.1 #6b7ca1

> color #1.1 #6f82a1

> color #1.1 #7187a1

> color #1.1 #7289a1

> color #1.1 #748da1

> color #1.1 #758ea1

> color #1.1 #7692a1

> color #1.1 #7597a1

> color #1.1 #739ba1

> color #1.1 #729da1

> color #1.1 #6fa1a0

> color #1.1 #6da19e

> color #1.1 #6da19d

> color #1.1 #6ca19b

> color #1.1 #6ba19b

> color #1.1 #6aa19b

> color #1.1 #68a19b

> color #1.1 #65a19b

> color #1.1 #5da19b

> color #1.1 #53a199

> color #1.1 #48a196

> color #1.1 #3fa194

> color #1.1 #34a192

> color #1.1 #31a192

> color #1.1 #2ba191

> color #1.1 #29a191

> color #1.1 #28a191

> color #1.1 #27a191

> color #1.1 #26a191

> color #1.1 #25a191

> color #1.1 #24a191

> color #1.1 #23a191

> color #1.1 #22a191

> color #1.1 #22a192

> color #1.1 #21a192

> color #1.1 #20a192

> color #1.1 #1fa192

> color #1.1 #1fa193

> color #1.1 #1fa193fe

> color #1.1 #1fa193f2

> color #1.1 #1fa193d7

> color #1.1 #1fa193be

> color #1.1 #1fa193b5

> color #1.1 #1fa193ac

> color #1.1 #1fa193aa

> color #1.1 #1fa193a7

> color #1.1 #1fa193a3

> color #1.1 #1fa1939f

> color #1.1 #1fa1939e

> color #1.1 #1fa1939b

> color #1.1 #1fa19399

> color #1.1 #1fa19398

> color #1.1 #1fa19397

> color #1.1 #1fa19398

> color #1.1 #1fa19399

> color #1.1 #1fa1939a

> color #1.1 #1fa1939b

> color #1.1 #1fa1939c

> select clear

> select add /A:142@C

1 atom, 1 residue, 1 model selected  

> select add /A:143@N

2 atoms, 2 residues, 1 model selected  

> select add /A:143@CA

3 atoms, 2 residues, 1 model selected  

> select add /A:142@CA

4 atoms, 2 residues, 1 model selected  

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select /A:142@C

1 atom, 1 residue, 1 model selected  

> select add /A:142@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 2 residues, 1 model selected  

> define plane sel color #909090 padding 0.5 thickness 0.15

Plane 'plane' placed at [-23.40666667 26.94866667 15.07466667] with normal
[-0.55887244 -0.64599619 0.51995243] and radius 1.8  

> color #1.3 #909090fe

> color #1.3 #909090e2

> color #1.3 #909090d1

> color #1.3 #909090b5

> color #1.3 #909090a4

> color #1.3 #9090909b

> color #1.3 #90909093

> color #1.3 #9090908c

> color #1.3 #9090908a

> color #1.3 #90909089

> color #1.3 #90909088

> color #1.3 #90909085

> color #1.3 #90909082

> color #1.3 #9090907e

> color #1.3 #90909078

> color #1.3 #90909077

> color #1.3 #90909073

> color #1.3 #90909072

> color #1.3 #90909073

> color #1.3 #90909074

> color #1.3 #90909075

> color #1.3 #90909076

> color #1.3 #90909077

> color #1.3 #90909078

> color #1.3 #90909079

> color #1.3 #9090907a

> color #1.3 #9090907c

> color #1.3 #9090907e

> color #1.3 #90909081

> color #1.3 #90909082

> color #1.3 #90909083

> color #1.3 #93a19083

> color #1.3 #94a18e83

> color #1.3 #96a18983

> color #1.3 #98a17f83

> color #1.3 #9ca17483

> color #1.3 #9ea16b83

> color #1.3 #9fa16683

> color #1.3 #a0a16383

> color #1.3 #9fa16283

> color #1.3 #9fa16183

> color #1.3 #9fa15f83

> color #1.3 #a1a15783

> color #1.3 #a19e4683

> color #1.3 #a19c3f83

> color #1.3 #a19a3783

> color #1.3 #a1983183

> color #1.3 #a1982f83

> color #1.3 #a1972c83

> color #1.3 #a1972b83

> color #1.3 #a1962b83

> color #1.3 #a1962a83

> color #1.3 #a1952a83

> color #1.3 #a1952983

> color #1.3 #a1922483

> color #1.3 #a1912283

> color #1.3 #a1912083

> color #1.3 #a1901f83

> color #1.3 #a18f1e83

> color #1.3 #a1901f83

> color #1.3 #a18f1f83

> color #1.3 #a1902083

> color #1.3 #a1902183

> color #1.3 #a1922483

> color #1.3 #a1942883

> color #1.3 #a1962d83

> color #1.3 #a1983183

> color #1.3 #a19a3483

> color #1.3 #a19a3583

> color #1.3 #a19b3683

> color #1.3 #a19c3783

> color #1.3 #a19d3883

> color #1.3 #a1a03e83

> color #1.3 #a1a14283

> color #1.3 #9fa14483

> color #1.3 #9ea14683

> color #1.3 #9ea14783

> color #1.3 #9ca14483

> color #1.3 #9da14583

> color #1.3 #9ea14683

> color #1.3 #a1a04883

> color #1.3 #a19b4983

> color #1.3 #a18e4b83

> color #1.3 #a1844a83

> color #1.3 #a17e4983

> color #1.3 #a1754683

> color #1.3 #a1744683

> color #1.3 #a1734583

> color #1.3 #a1744583

> color #1.3 #a1764583

> color #1.3 #a1784583

> color #1.3 #a17e4683

> color #1.3 #a1854683

> color #1.3 #a1884683

> color #1.3 #a1924583

> color #1.3 #a1964583

> color #1.3 #a1994583

> color #1.3 #a19a4683

> color #1.3 #a19c4783

> color #1.3 #a19e4983

> color #1.3 #a1a15183

> color #1.3 #a1a15b83

> color #1.3 #a1a16183

> color #1.3 #a19f7783

> color #1.3 #a19c8683

> color #1.3 #a1959783

> color #1.3 #a18fa183

> color #1.3 #9d89a183

> color #1.3 #9379a183

> color #1.3 #8c6ba183

> color #1.3 #8a68a183

> color #1.3 #865fa183

> color #1.3 #865ca183

> color #1.3 #865aa183

> color #1.3 #8653a183

> color #1.3 #864ca183

> color #1.3 #8646a183

> color #1.3 #863fa183

> color #1.3 #873ca183

> color #1.3 #873aa183

> color #1.3 #8739a183

> color #1.3 #8738a183

> color #1.3 #8838a183

> color #1.3 #8938a183

> color #1.3 #8a37a183

> color #1.3 #8d36a183

> color #1.3 #9134a183

> color #1.3 #9432a183

> color #1.3 #9831a183

> color #1.3 #9930a183

> color #1.3 #9a30a183

> color #1.3 #9a2fa183

> color #1.3 #9b30a183

> color #1.3 #9c30a183

> color #1.3 #9d31a183

> color #1.3 #9e32a183

> color #1.3 #a034a183

> color #1.3 #a135a183

> color #1.3 #a135a185

> select clear

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 1 residue, 1 model selected  

> ui tool show Angles/Torsions

> select clear

> set bgColor white

> help

> select add /A:144@CB

1 atom, 1 residue, 1 model selected  

> select add /A:144@CG

2 atoms, 1 residue, 1 model selected  

> select add /A:144@ND2

3 atoms, 1 residue, 1 model selected  
Drag select of 4 atoms, 3 bonds  

> select add /A:144@CB

2 atoms, 3 bonds, 1 residue, 1 model selected  

> hide sel

Drag select of 2 atoms, 1 bonds  

> hide sel

Drag select of 4 atoms, 3 bonds  

> hide sel

> undo

[Repeated 4 time(s)]Drag select of Ca plane, plane, plane, 33 atoms, 33 bonds  

> select /A:145@CA

1 atom, 1 residue, 1 model selected  

> select up

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

158 atoms, 161 bonds, 19 residues, 1 model selected  

> select :142-145

70 atoms, 66 bonds, 12 residues, 1 model selected  

> delete ~sel

> select clear

[Repeated 1 time(s)]

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> label sel

> label delete

> label atoms

> label :143 Ca

Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword  

> label :143 CA

Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword  

> label :143CA

> show label

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show lable

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> label /:143 residues text "{0.phi:.1f},{0.psi:.1f}"

Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword  

> label :143 residues text {0.phi:.1f},{0.psi:.1f}

> label :143 residues text "Phi {0.phi:.1f},Psi {0.psi:.1f}"

> ui mousemode right label

> label delete residues

[Repeated 1 time(s)]

> label :143 residues text "Phi {0.phi:.1f},Psi {0.psi:.1f}"

> ui mousemode right "move label"

> label :143 residues text "Phi {0.phi:.1f}"

> label :143 residues text "Psi {0.psi:.1f}"

> select #1.2

1 model selected  

> color #1.2 #2ea22980

> color #1.2 #2eab2980

> color #1.2 #2eb12980

> color #1.2 #2eb52980

> color #1.2 #2eb92980

> color #1.2 #2ebb2980

> color #1.2 #2ebc2980

> color #1.2 #2ebd2980

> color #1.2 #2ebe2980

> color #1.2 #2ebf2980

> color #1.2 #2ec12980

> color #1.2 #2ec32980

> color #1.2 #2ec42980

> color #1.2 #2ec52980

> color #1.2 #2ec62980

> color #1.2 #2ec72980

> color #1.2 #2ec82980

> color #1.2 #2ece2980

> color #1.2 #2ed82980

> color #1.2 #2ede2980

> color #1.2 #2ee22980

> color #1.2 #2ee62980

> color #1.2 #2ee72980

> select clear

> style stick

Changed 70 atom styles  

> style ball

Changed 70 atom styles  

> nucleotides atoms

> style nucleic stick

Changed 0 atom styles  

> style ball thin

Expected a keyword  

> style ball ringFill thin

Changed 70 atom styles, 12 residue ring styles  

> undo

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:142@CA

2 atoms, 2 residues, 1 model selected  

> ui mousemode right label

> label #1/A:143

> rename #1 angels

> select clear

[Repeated 1 time(s)]

> label #1/A:142

> label delete residues

> ui mousemode right "translate selected atoms"

> ui mousemode right "rotate selected models"

[Repeated 1 time(s)]

> ui mousemode right "translate selected models"

> ui mousemode right translate

> ui mousemode right "play map series"

[Repeated 1 time(s)]

> ui mousemode right "play coordinates"

[Repeated 1 time(s)]

> ui mousemode right minimize

> rename #1.2 ""

ID must be one or more integers separated by '.' characters  
[Repeated 1 time(s)]

> rename #1.2 ""

No visible atoms selected  

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> label sel atoms attribute element

> ui mousemode right "move label"

> ui mousemode right label

> label sel atoms attribute idatm_type

> label sel atoms text Ca

> select /A:143@N

1 atom, 1 residue, 1 model selected  

> label #1/A:142

> ui mousemode right zoom

> ui mousemode right translate

> select /A:143@N

1 atom, 1 residue, 1 model selected  
Height must be a positive number  

> label sel atoms text N

> ui mousemode right "move label"

> select clear

> ui mousemode right label

> label #1/A:143

> ui mousemode right "move label"

> ui mousemode right label

> label delete residues

[Repeated 6 time(s)]

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> label sel atoms

> label delete residues

> ui mousemode right "move label"

> select /A:143@C

1 atom, 1 residue, 1 model selected  

> label sel atoms

Drag select of , 8 of 160 triangles  

> select clear

> select /A:143@O

1 atom, 1 residue, 1 model selected  

> label sel atoms

> select #1.2

1 model selected  

> select clear

> select /A:143@CB

1 atom, 1 residue, 1 model selected  
Drag select of 6 atoms, 6 bonds  

> hide sel

> ui mousemode right label

> select /A:143@CB

1 atom, 1 residue, 1 model selected  

> color sel magenta

> label sel atoms text R

> ui mousemode right "move label"

> select clear

[Repeated 1 time(s)]

> select /A:142@CG

1 atom, 1 residue, 1 model selected  
Drag select of 3 atoms, 3 bonds  

> hide sel

> undo

> select add /A:142@CG

3 atoms, 2 bonds, 1 residue, 1 model selected  

> select subtract /A:142@CG

2 atoms, 1 residue, 1 model selected  

> select add /A:142@CG

3 atoms, 1 residue, 1 model selected  
Drag select of 3 atoms, 3 bonds  

> hide sel

Drag select of 3 atoms, 2 bonds  
[Repeated 1 time(s)]

> hide sel

> hide #!1 models

> show #!1 models

> select /A:142@ND2

1 atom, 1 residue, 1 model selected  

> hide sel

> select /A:142@OD1

1 atom, 1 residue, 1 model selected  

> hide sel

> select /A:142@CG

1 atom, 1 residue, 1 model selected  

> hide sel

> select /A:142@CB

1 atom, 1 residue, 1 model selected  

> color sel magenta

> select clear

[Repeated 1 time(s)]

> ui mousemode right translate

> select add /A:144@CG

1 atom, 1 residue, 1 model selected  

> select add /A:144@CB

2 atoms, 1 residue, 1 model selected  

> hide sel

> select add /A:144@OD1

3 atoms, 1 residue, 1 model selected  

> select add /A:144@ND2

4 atoms, 1 residue, 1 model selected  

> hide sel

> select add /A:145@C

5 atoms, 2 residues, 1 model selected  

> select add /A:145@O

6 atoms, 2 residues, 1 model selected  

> select subtract /A:145@O

5 atoms, 2 residues, 1 model selected  

> undo

[Repeated 9 time(s)]

> select /A:144@CA

1 atom, 1 residue, 1 model selected  

> show sel

> show :144

> select add /A:144@CG

2 atoms, 1 residue, 1 model selected  

> select add /A:144@OD1

3 atoms, 1 residue, 1 model selected  

> select add /A:144@ND2

4 atoms, 1 residue, 1 model selected  

> hide sel

> undo

> select /A:144@CG

1 atom, 1 residue, 1 model selected  

> select /A:144@ND2

1 atom, 1 residue, 1 model selected  

> select /A:144@OD1

1 atom, 1 residue, 1 model selected  

> select add /A:144@CG

2 atoms, 1 residue, 1 model selected  

> select add /A:144@ND2

3 atoms, 1 bond, 1 residue, 1 model selected  

> hide sel

> select /A:144@CB

1 atom, 1 residue, 1 model selected  

> color sel magenta

> select clear

> select add /A:145@C

1 atom, 1 residue, 1 model selected  

> select add /A:145@O

2 atoms, 1 residue, 1 model selected  

> select subtract /A:145@O

1 atom, 1 residue, 1 model selected  

> select /A:145@O

1 atom, 1 residue, 1 model selected  

> hide sel

> select /A:145@C

1 atom, 1 residue, 1 model selected  

> color sel magenta

> select clear

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel .cxs"

> view orient

> undo

> ui tool show "Side View"

Drag select of 9 atoms, 7 bonds  

> delete sel

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel .cxs"

——— End of log from Fri Jun 23 19:45:10 2023 ———

opened ChimeraX session  

> ui tool show Axes/Planes/Centroids

Ca plane #1.1 to #1.2: distance: 0.000Å; angle: 51.4°  
#1.2 to plane #1.3: distance: 0.000Å; angle: 38.0°  
Ca plane #1.1 to #1.2: distance: 0.000Å; angle: 51.4°  
#1.2 to plane #1.3: distance: 0.000Å; angle: 38.0°  

> close #1.1-3

> select add /A:143@N

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1135

2 atoms, 2 residues, 1 model selected  

> select add @@serial_number=1134

3 atoms, 2 residues, 1 model selected  

> select add /A:143@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 1

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.9  

> close #1.1

> define plane sel padding 0.5

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.4  

> color #1.1 #d2b48cec

> color #1.1 #d2b48ceb

> color #1.1 #d2b48ce6

> color #1.1 #d2b48cdb

> color #1.1 #d2b48cce

> color #1.1 #d2b48cb5

> color #1.1 #d2b48ca8

> color #1.1 #d2b48c96

> color #1.1 #d2b48c90

> color #1.1 #d2b48c8b

> color #1.1 #d2b48c88

> color #1.1 #d2b48c81

> color #1.1 #d2b48c7f

> color #1.1 #d2b48c7c

> color #1.1 #d2b48c7b

> color #1.1 #d2b48c7c

> color #1.1 #d2b48c7d

> color #1.1 #d2b48c7e

> color #1.1 #d2b48c7d

> color #1.1 #d2b48c7a

> color #1.1 #d2b48c74

> color #1.1 #d2b48c63

> color #1.1 #d2b48c5e

> color #1.1 #d2b48c57

> color #1.1 #d2b48c54

> color #1.1 #d2b48c52

> color #1.1 #d2b48c4f

> color #1.1 #d2b48c4e

> color #1.1 #d2b48c4d

> color #1.1 #d7cdad4d

> color #1.1 #d7cdae4d

> color #1.1 #d7d0ad4d

> color #1.1 #d0d7a74d

> color #1.1 #b5d7934d

> color #1.1 #83d7684d

> color #1.1 #56d7444d

> color #1.1 #41d73a4d

> color #1.1 #3cd7384d

> color #1.1 #37d7364d

> color #1.1 #31d7404d

> color #1.1 #2dd7484d

> color #1.1 #2dd7494d

> color #1.1 #2ed74a4d

> color #1.1 #2fd74d4d

> color #1.1 #31d7594d

> color #1.1 #32d75d4d

> color #1.1 #36d7614d

> color #1.1 #55d7704d

> color #1.1 #6ad7754d

> color #1.1 #72d7744d

> color #1.1 #7cd7764d

> color #1.1 #8dd77c4d

> color #1.1 #9fd77d4d

> color #1.1 #b2d7774d

> color #1.1 #bdd76a4d

> color #1.1 #c3d7614d

> color #1.1 #d0d74e4d

> color #1.1 #d5d7474d

> color #1.1 #d7d6424d

> color #1.1 #d7d33c4d

> color #1.1 #d7d0384d

> color #1.1 #d7cf354d

> color #1.1 #d7ce344d

> color #1.1 #d7cd324d

> color #1.1 #d7cd354d

> color #1.1 #d7cf434d

> color #1.1 #cdd7794d

> color #1.1 #b6d7984d

> color #1.1 #95d79f4d

> color #1.1 #7ed7a34d

> color #1.1 #70d7a04d

> color #1.1 #68d79d4d

> color #1.1 #5dd79e4d

> color #1.1 #4ed79f4d

> color #1.1 #3ed7a94d

> color #1.1 #32d7ba4d

> color #1.1 #30d7c04d

> color #1.1 #31d7c54d

> color #1.1 #30d7d14d

> color #1.1 #2fd7d44d

> color #1.1 #2fd7d64d

> color #1.1 #30d7d64d

> color #1.1 #31d7d64d

> color #1.1 #32d6d74d

> color #1.1 #34d5d74d

> color #1.1 #36d3d74d

> color #1.1 #38d1d74d

> color #1.1 #3bcfd74d

> color #1.1 #3fcdd74d

> color #1.1 #40cdd74d

> color #1.1 #40ccd74d

> color #1.1 #41cbd74d

> color #1.1 #43c7d74d

> color #1.1 #47c0d74d

> color #1.1 #49bcd74d

> color #1.1 #4abbd74d

> color #1.1 #49bbd74d

> color #1.1 #45b9d74d

> color #1.1 #42b9d74d

> color #1.1 #3db9d74d

> color #1.1 #32bbd74d

> color #1.1 #26bfd74d

> color #1.1 #19c3d74d

> color #1.1 #12c6d74d

> color #1.1 #11c6d74d

> color #1.1 #10c7d74d

> color #1.1 #03cfd74d

> color #1.1 #00d7d34d

> select clear

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 residue, 1 model selected  

> select add /A:144@N

3 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 0.5

Plane 'plane' placed at [-19.68624973 25.13775015 15.13399982] with normal [
0.06672232 -0.739718 0.66960094] and radius 2.4  

> color #1.2 #d7c5a4

> color #1.2 #d7c6a3

> color #1.2 #d7c7a2

> color #1.2 #d7c99f

> color #1.2 #d7d08f

> color #1.2 #d7d77b

> color #1.2 #d1d765

> color #1.2 #cdd754

> color #1.2 #ccd740

> color #1.2 #cbd732

> color #1.2 #ccd72f

> color #1.2 #cbd72a

> color #1.2 #ccd719

> color #1.2 #cdd705

> color #1.2 #cdd700

> color #1.2 #cdd70080

> color #1.2 #cdd7007f

> color #1.2 #cdd7007d

> color #1.2 #cdd70075

> color #1.2 #cdd70070

> color #1.2 #cdd70065

> color #1.2 #cdd7005d

> color #1.2 #cdd7005c

> color #1.2 #cdd7005b

> color #1.2 #cdd7004d

> select clear

> select add /A:143@N

1 atom, 1 residue, 1 model selected  

> select add /A:143@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:143@C

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 1.2

Plane 'plane' placed at [-21.4053332 25.57400004 15.30566661] with normal
[-0.48407413 -0.87205222 0.07209138] and radius 2.5  

> close #1.3

> define plane sel padding 0.5

Plane 'plane' placed at [-21.4053332 25.57400004 15.30566661] with normal
[-0.48407413 -0.87205222 0.07209138] and radius 1.8  

> color #1.3 #d2b48cfe

> color #1.3 #d2b48cfb

> color #1.3 #d2b48cf0

> color #1.3 #d2b48cc8

> color #1.3 #d2b48cb6

> color #1.3 #d2b48c94

> color #1.3 #d2b48c8b

> color #1.3 #d2b48c81

> color #1.3 #d2b48c80

> color #1.3 #d2b48c77

> color #1.3 #d2b48c76

> color #1.3 #d2b48c77

> color #1.3 #d2b48c78

> color #1.3 #d2b48c79

> color #1.3 #d2b48c7b

> color #1.3 #d2b48c7c

> color #1.3 #d2b48c7e

> color #1.3 #d2b48c80

> color #1.3 #d7c99f80

> color #1.3 #d7caa080

> color #1.3 #d7cda280

> color #1.3 #d7d2a780

> color #1.3 #d7d6ab80

> color #1.3 #d2d7b280

> color #1.3 #d1d7b480

> color #1.3 #d1d7b580

> color #1.3 #d1d7b680

> color #1.3 #d0d7b880

> color #1.3 #cfd7bb80

> color #1.3 #cdd7bf80

> color #1.3 #cbd7c580

> color #1.3 #cad7c680

> color #1.3 #c9d7c780

> color #1.3 #c9d7c880

> color #1.3 #c9d7c780

> color #1.3 #c9d7c680

> color #1.3 #c9d7c580

> color #1.3 #cad7c480

> color #1.3 #cbd7c480

> color #1.3 #cfd7c280

> color #1.3 #d3d7c080

> color #1.3 #d7d5bb80

> color #1.3 #d7c2a880

> color #1.3 #d7ba9f80

> color #1.3 #d7b19780

> color #1.3 #d7a98f80

> color #1.3 #d7a88d80

> color #1.3 #d7a78c80

> color #1.3 #d7a38980

> color #1.3 #d79f8580

> color #1.3 #d79b8280

> color #1.3 #d7937a80

> color #1.3 #d78d7480

> color #1.3 #d7856e80

> color #1.3 #d7756180

> color #1.3 #d76f5c80

> color #1.3 #d76b5980

> color #1.3 #d7685780

> color #1.3 #d7695780

> color #1.3 #d7695880

> color #1.3 #d76b5980

> color #1.3 #d7736180

> color #1.3 #d77b6880

> color #1.3 #d7877380

> color #1.3 #d79a8580

> color #1.3 #d7a18c80

> color #1.3 #d7a59080

> color #1.3 #d7a99480

> color #1.3 #d7ac9780

> color #1.3 #d7b19d80

> color #1.3 #d7b6a380

> color #1.3 #d7beae80

> color #1.3 #d7c0b080

> color #1.3 #d7c1b280

> color #1.3 #d7c2b280

> color #1.3 #d7c2b380

> color #1.3 #d7c3b480

> color #1.3 #d7c7b980

> color #1.3 #d7cabd80

> color #1.3 #d7cdc280

> color #1.3 #d7d0c780

> color #1.3 #d7d3cb80

> color #1.3 #d7d4cb80

> color #1.3 #d3d7cb80

> color #1.3 #d3d7cc80

> color #1.3 #d6d7d180

> color #1.3 #d6d0d780

> color #1.3 #c9b8d780

> color #1.3 #c4add780

> color #1.3 #c0a5d780

> color #1.3 #bd9fd780

> color #1.3 #bb9cd780

> color #1.3 #bb9bd780

> color #1.3 #bb9ad780

> color #1.3 #bd99d780

> color #1.3 #bf97d780

> color #1.3 #c293d780

> color #1.3 #c68fd780

> color #1.3 #c98ad780

> color #1.3 #cb87d780

> color #1.3 #cd84d780

> color #1.3 #ce83d780

> color #1.3 #ce84d780

> color #1.3 #cf85d780

> color #1.3 #d186d780

> color #1.3 #d487d780

> color #1.3 #d787d680

> color #1.3 #d787d380

> color #1.3 #d787d080

> color #1.3 #d786d080

> color #1.3 #d786cf80

> color #1.3 #d785ce80

> color #1.3 #d781cb80

> color #1.3 #d77fc980

> color #1.3 #d77cc880

> color #1.3 #d776c680

> color #1.3 #d773c580

> color #1.3 #d770c480

> color #1.3 #d76dc380

> color #1.3 #d76cc380

> color #1.3 #d76cc480

> color #1.3 #d76dc480

> color #1.3 #d76ec580

> color #1.3 #d76fc880

> color #1.3 #d773cc80

> color #1.3 #d777d280

> color #1.3 #d67ad780

> color #1.3 #cd7fd780

> color #1.3 #cc80d780

> color #1.3 #cb81d780

> color #1.3 #ca81d780

> color #1.3 #ca82d780

> color #1.3 #ca85d780

> color #1.3 #ca89d780

> color #1.3 #cb97d780

> color #1.3 #cd9fd780

> color #1.3 #cfa6d780

> color #1.3 #d2add780

> color #1.3 #d5b2d780

> color #1.3 #d7bad280

> color #1.3 #d7bbce80

> color #1.3 #d7b9c880

> color #1.3 #d7b1be80

> color #1.3 #d7adb980

> color #1.3 #d7a6b280

> color #1.3 #d7a3af80

> color #1.3 #d79da880

> color #1.3 #d79aa680

> color #1.3 #d798a480

> color #1.3 #d796a280

> color #1.3 #d792a080

> color #1.3 #d7909e80

> color #1.3 #d78e9d80

> color #1.3 #d7889a80

> color #1.3 #d7859780

> color #1.3 #d7819580

> color #1.3 #d7809580

> color #1.3 #d77f9480

> color #1.3 #d77d9380

> color #1.3 #d7798e80

> color #1.3 #d7728880

> color #1.3 #d7667b80

> color #1.3 #d7627780

> color #1.3 #d7607580

> color #1.3 #d75e7480

> color #1.3 #d75d7480

> color #1.3 #75fabd

> color #1.3 #74fab7

> color #1.3 #75faad

> color #1.3 #74faa9

> color #1.3 #74faa8

> color #1.3 #74fa9d

> color #1.3 #74fa98

> color #1.3 #75fa92

> color #1.3 #75fa8e

> color #1.3 #75fa89

> color #1.3 #75fa8a

> color #1.3 #74fa8a

> color #1.3 #74fa89

[Repeated 1 time(s)]

> color #1.3 #75fb89

> color #1.3 #75fb85

[Repeated 1 time(s)]

> color #1.3 #74fa81

[Repeated 3 time(s)]

> color #1.3 #74f980

> color #1.3 #72f581

> color #1.3 #70f082

> color #1.3 #6de98c

> color #1.3 #6be491

> color #1.3 #6ae392

> color #1.3 #6ae292

> color #1.3 #6ae393

[Repeated 1 time(s)]

> color #1.3 #6ae293

> color #1.3 #69e295

> color #1.3 #69e094

> color #1.3 #67dd95

> color #1.3 #64d693

> color #1.3 #64d595

> color #1.3 #63d494

[Repeated 1 time(s)]

> color #1.3 #63d293

> color #1.3 #61cf91

> color #1.3 #5fcb8e

> color #1.3 #5ec98d

> color #1.3 #5dc58b

> color #1.3 #5cc48b

> color #1.3 #5cc38a

> color #1.3 #5bc189

> color #1.3 #5ac088

> color #1.3 #5abe87

> color #1.3 #59bc85

> color #1.3 #58bc85

[Repeated 1 time(s)]

> color #1.3 #58bb83

> color #1.3 #58bb7a

> color #1.3 #58bc68

> color #1.3 #59be5c

> color #1.3 #5abf58

> color #1.3 #5ac057

> color #1.3 #5ac055

> color #1.3 #5bc155

> color #1.3 #5cc351

> color #1.3 #5cc54d

> color #1.3 #5dc64d

> color #1.3 #5dc64c

> color #1.3 #60cc46

> color #1.3 #62d242

> color #1.3 #64d442

> color #1.3 #66d843

> color #1.3 #68db44

> color #1.3 #69dd44

> color #1.3 #6adf45

> color #1.3 #6de346

> color #1.3 #6de446

> color #1.3 #6ee647

> color #1.3 #6fe948

> color #1.3 #70ea48

> color #1.3 #71ed49

> color #1.3 #72ef49

> color #1.3 #73f14a

> color #1.3 #74f24a

> color #1.3 #76f64b

> color #1.3 #76f84b

[Repeated 1 time(s)]

> color #1.3 #76fa4c

> color #1.3 #76fb4c

> color #1.3 #75fb4c

[Repeated 4 time(s)]

> color #1.3 #75fa4c

> color #1.3 #75fb4d

> color #1.3 #74fa50

> color #1.3 #74fa52

[Repeated 1 time(s)]

> color #1.3 #74fa53

> color #1.3 #74fa53fd

> color #1.3 #74fa53f6

> color #1.3 #74fa53ec

> color #1.3 #74fa53df

> color #1.3 #74fa53ca

> color #1.3 #74fa53c3

> color #1.3 #74fa53bd

> color #1.3 #74fa53b7

> color #1.3 #74fa53b6

> color #1.3 #74fa53b5

> color #1.3 #74fa53b4

> color #1.3 #74fa53b2

> color #1.3 #74fa53af

> color #1.3 #74fa53ac

> color #1.3 #74fa53aa

> color #1.3 #74fa53a6

> color #1.3 #74fa53a2

> color #1.3 #74fa5397

> color #1.3 #74fa5392

> color #1.3 #74fa5390

> color #1.3 #74fa538e

> color #1.3 #74fa538d

> color #1.3 #74fa538c

> color #1.3 #74fa538a

> color #1.3 #74fa5388

> color #1.3 #74fa5386

> color #1.3 #74fa5385

> color #1.3 #74fa5384

> color #1.3 #74fa5383

> color #1.3 #74fa5382

> color #1.3 #74fa5380

> select clear

> lighting flat

> lighting shadows true intensity 0.5

> lighting flat

> lighting full

> lighting soft

> lighting simple

> lighting soft

> graphics silhouettes false

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel .cxs"

> lighting flat

> lighting soft

> color #1.1 #5bdad64d

> color #1.1 #5cdad54d

> color #1.1 #60dad54d

> color #1.1 #72dad54d

> color #1.1 #98d9da4d

> color #1.1 #b0cbda4d

> color #1.1 #b9beda4d

> color #1.1 #c5b6da4d

> color #1.1 #d2a5da4d

> color #1.1 #da8cd44d

> color #1.1 #da64c44d

> color #1.1 #da4dbe4d

> color #1.1 #da47bd4d

> color #1.1 #da47bc4d

> color #1.1 #da48bc4d

> color #1.1 #da4abc4d

> color #1.1 #da4dbc4d

> color #1.1 #da54be4d

> color #1.1 #da6ec64d

> color #1.1 #da79cb4d

> color #1.1 #da7acb4d

> color #1.1 #da7cca4d

> color #1.1 #da7fca4d

> color #1.1 #da81c94d

> color #1.1 #da81ca4d

> color #1.1 #da81ca4f

> color #1.1 #da81ca50

> color #1.1 #da81ca55

> color #1.1 #da81ca58

> color #1.1 #da81ca5c

> color #1.1 #da81ca60

> color #1.1 #da81ca61

> color #1.1 #da81ca62

> color #1.1 #da81ca64

> color #1.1 #da81ca66

> color #1.1 #da81ca67

> color #1.1 #da81ca68

> color #1.1 #da81ca67

> color #1.1 #da81ca65

> color #1.1 #da81ca64

> color #1.1 #da81ca60

> color #1.1 #da81ca5e

> color #1.1 #da81ca5d

> color #1.1 #da81ca5b

> color #1.1 #da81ca56

> color #1.1 #da81ca4f

> color #1.1 #da81ca4c

> color #1.1 #da81ca48

> color #1.1 #da81ca47

> color #1.1 #da81ca44

> color #1.1 #da81ca40

> color #1.1 #da81ca3e

> color #1.1 #da81ca3f

> color #1.1 #da81ca41

> color #1.1 #da81ca42

> color #1.1 #da81ca43

> color #1.1 #da81ca44

> color #1.1 #da81ca45

> color #1.1 #da81ca47

> color #1.1 #da81ca48

> color #1.1 #da81ca49

> color #1.1 #da81ca4a

> color #1.1 #db82ca4a

> color #1.1 #f491e24a

> color #1.1 #f994e74a

> color #1.1 #ff97ec4a

> color #1.2 #d3db494d

> color #1.2 #d2db494d

> color #1.2 #d2db474d

> color #1.2 #d3db454d

> color #1.2 #d4db434d

> color #1.2 #d9db3e4d

> color #1.2 #dbd6394d

> color #1.2 #dbd2354d

> color #1.2 #dbc92d4d

> color #1.2 #dbc1264d

> color #1.2 #dbbd234d

> color #1.2 #dbbb224d

> color #1.2 #dbba224d

> color #1.2 #dbba234d

> color #1.2 #dbb9234d

> color #1.2 #dbba244d

> color #1.2 #dbbb254d

> color #1.2 #dbbc254d

> color #1.2 #dbbd264d

> color #1.2 #dbc3274d

> color #1.2 #dbcb274d

> color #1.2 #dbce284d

> color #1.2 #dbd0284d

> color #1.2 #dbd3284d

> color #1.2 #dcd4294d

> color #1.2 #ede42c4d

> color #1.2 #f3ea2d4d

> color #1.2 #fff62f4d

> color #1.3 #9df47980

> color #1.3 #9ef47a80

> color #1.3 #a0f87c80

> color #1.3 #a3fd7e80

> color #1.3 #a5ff7f80

> color #1.3 #a5ff7f4d

> select /A:144@N

1 atom, 1 residue, 1 model selected  

> ui mousemode right zoom

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/angels normal
> .png" width 936 height 665 supersample 4 transparentBackground true

> color #1.1 #ff97ec4e

> color #1.1 #ff97ec60

> color #1.1 #ff97ec67

> color #1.1 #ff97ec6f

> color #1.1 #ff97ec71

> color #1.1 #ff97ec73

> color #1.1 #ff97ec76

> color #1.1 #ff97ec7a

> color #1.1 #ff97ec7d

> color #1.1 #ff97ec80

> color #1.2 #fff62f51

> color #1.2 #fff62f58

> color #1.2 #fff62f61

> color #1.2 #fff62f6f

> color #1.2 #fff62f73

> color #1.2 #fff62f77

> color #1.2 #fff62f78

> color #1.2 #fff62f7a

> color #1.2 #fff62f7c

> color #1.2 #fff62f7e

> color #1.2 #fff62f81

> color #1.2 #fff62f82

> color #1.2 #fff62f84

> color #1.2 #fff62f83

> color #1.2 #fff62f82

> color #1.3 #a5ff7f4e

> color #1.3 #a5ff7f5b

> color #1.3 #a5ff7f66

> color #1.3 #a5ff7f77

> color #1.3 #a5ff7f7c

> color #1.3 #a5ff7f80

> color #1.3 #a5ff7f88

> color #1.3 #a5ff7f87

> color #1.3 #a5ff7f85

> color #1.3 #a5ff7f84

> color #1.3 #a5ff7f81

> color #1.3 #a5ff7f7d

> color #1.3 #a5ff7f77

> color #1.3 #a5ff7f74

> color #1.3 #c0f99e74

> color #1.3 #c0fa9e74

> color #1.3 #c2fb9f74

> color #1.3 #c4fea174

> color #1.3 #c4ffa274

> color #1.3 #b4ff8d74

> color #1.3 #b4ff8e74

> color #1.3 #b5ff9074

> color #1.3 #b6ff9274

> color #1.3 #b7ff9374

> color #1.3 #b7ff9474

> color #1.3 #b9ff9874

> color #1.3 #b9ff9b74

> color #1.3 #bbffa174

> color #1.3 #bcffa374

> color #1.3 #bdffa574

> color #1.3 #bdffa674

> color #1.3 #bdffa774

> color #1.3 #bcffa774

> color #1.3 #bbffa774

> color #1.3 #baffa774

> color #1.3 #b9ffa674

> color #1.3 #b8ffa674

> color #1.3 #b3ffa574

> color #1.3 #afffa374

> color #1.3 #a9ff9f74

> color #1.3 #a3ff9a74

> color #1.3 #9cff9574

> color #1.3 #96ff8f74

> color #1.3 #8dff8674

> color #1.3 #85ff7c74

> color #1.3 #81ff7774

> color #1.3 #7bff7074

> color #1.3 #78ff6c74

> color #1.3 #76ff6974

> color #1.3 #72ff6374

> color #1.3 #70ff6174

> color #1.3 #70ff6074

> color #1.3 #6fff6074

> color #1.3 #6fff6174

> color #1.3 #70ff6274

> color #1.3 #71ff6274

> color #1.3 #71ff6374

> color #1.3 #72ff6474

> color #1.3 #73ff6574

> color #1.3 #74ff6574

> color #1.3 #74ff6674

> color #1.3 #75ff6674

> color #1.3 #75ff6675

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel .cxs"

——— End of log from Sat Jun 24 00:39:15 2023 ———

opened ChimeraX session  

> color #1 #c7b498ff

> color #1 #484137ff

> color #1 black

> color #1 #00000080

> color #1 #00000097

> color #1 silver

> color #1 #797979ff

> select clear

> color byhetero

> select /A:143@CB

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1137

2 atoms, 2 residues, 1 model selected  

> select add /A:144@CB

3 atoms, 3 residues, 1 model selected  

> select clear

> select add /A:143@CB

1 atom, 1 residue, 1 model selected  

> select add /A:144@CB

2 atoms, 2 residues, 1 model selected  

> select add /A:145@C

3 atoms, 1 bond, 3 residues, 1 model selected  

> select /A:145@C

1 atom, 1 residue, 1 model selected  
Drag select of plane, 18 of 192 triangles  

> select clear

> select /A:145@C

1 atom, 1 residue, 1 model selected  

> select /A:144@CB

1 atom, 1 residue, 1 model selected  

> select add /A:145@C

2 atoms, 2 residues, 1 model selected  

> select add /A:143@CB

3 atoms, 3 residues, 1 model selected  

> color sel magenta

> ui tool show Axes/Planes/Centroids

> color #1.1 #858c80

> color #1.1 #848c80

> color #1.1 #858c7e

> color #1.1 #878c7a

> color #1.1 #888c75

> color #1.1 #898c71

> color #1.1 #8b8c6e

> color #1.1 #8c8c6c

> color #1.1 #8c8b6c

> color #1.1 #8c8b6b

> color #1.1 #8c8b6a

> color #1.1 #8c8b69

> color #1.1 #8c8a67

> color #1.1 #8c8a65

> color #1.1 #8c8963

> color #1.1 #8c8861

> color #1.1 #8c8760

> color #1.1 #8c875f

> color #1.1 #8c865f

> color #1.1 #8c865e

> color #1.1 #8c855e

> color #1.1 #8c855d

> color #1.1 #8c845d

> color #1.1 #8c825b

> color #1.1 #8c8159

> color #1.1 #8c7e55

> color #1.1 #8c7d53

> color #1.1 #8c7c50

> color #1.1 #8c7b4c

> color #1.1 #8c7a49

> color #1.1 #8c7b43

> color #1.1 #8c7b3e

> color #1.1 #8c7c39

> color #1.1 #8c7c2a

> color #1.1 #8c7b24

> color #1.1 #8c7b1e

> color #1.1 #8c7a19

> color #1.1 #8c7a18

> color #1.1 #8c7b18

> color #1.1 #8c7b17

> color #1.1 #8c7b16

> color #1.1 #8c7b13

> color #1.1 #8c7b0d

> color #1.1 #8c7b05

> color #1.1 #8c7c00

> color #1.1 #8c7e00

> color #1.1 #8d7f00

> color #1.1 #958600

> color #1.1 #998a00

> color #1.1 #9a8b00

> color #1.1 #9c8d00

> color #1.1 #9f9000

> color #1.1 #a69600

> color #1.1 #ad9c00

> color #1.1 #b09f00

> color #1.1 #b8a600

> color #1.1 #baa700

> color #1.1 #baa800

> color #1.1 #bba800

> color #1.1 #bdaa00

> color #1.1 #c1ae00

> color #1.1 #cab600

> color #1.1 #d1bc00

> color #1.1 #d5c000

> color #1.1 #d9c400

> color #1.1 #dbc600

> color #1.1 #dbc6007d

> select #1.2

1 model selected  

> color #1.3 #8a8c86

> color #1.3 #8c8c85

> color #1.3 #8c8983

> color #1.3 #8c847f

> color #1.3 #8c7e7a

> color #1.3 #8c7774

> color #1.3 #8c6d6a

> color #1.3 #8c6967

> color #1.3 #8c6664

> color #1.3 #8c6260

> color #1.3 #8c5e5c

> color #1.3 #8c5957

> color #1.3 #8c5351

> color #1.3 #8c4745

> color #1.3 #8c4240

> color #1.3 #8c3f3d

> color #1.3 #8c3c3b

> color #1.3 #8c3b39

> color #1.3 #8c3736

> color #1.3 #8c3634

> color #1.3 #8c3331

> color #1.3 #8c312f

> color #1.3 #8c302e

> color #1.3 #8c2e2c

> color #1.3 #8c2d2b

> color #1.3 #8c2c2b

> color #1.3 #8c2b29

> color #1.3 #8c2826

> color #1.3 #8c2422

> color #1.3 #8c211f

> color #1.3 #8c1f1d

> color #1.3 #8c1e1c

> color #1.3 #8c1d1c

> color #1.3 #8c1e1c

> color #1.3 #8c1f1c

> color #1.3 #8c1f1d

> color #1.3 #8c201e

> color #1.3 #8c211e

> color #1.3 #8c221f

> color #1.3 #8c2321

> color #1.3 #8c2725

> color #1.3 #8c2d2a

> color #1.3 #8c332f

> color #1.3 #8c3935

> color #1.3 #8c3e39

> color #1.3 #8c423c

> color #1.3 #8c453f

> color #1.3 #8c4a43

> color #1.3 #8c544d

> color #1.3 #8c5952

> color #1.3 #8c5c55

> color #1.3 #8c615b

> color #1.3 #8c655e

> color #1.3 #8c6963

> color #1.3 #8c6e67

> color #1.3 #8c7670

> color #1.3 #8c7973

> color #1.3 #8c8079

> color #1.3 #8c837c

> color #1.3 #8c867f

> color #1.3 #8c8a82

> color #1.3 #8c8b83

> color #1.3 #8a8c84

> color #1.3 #858c84

> color #1.3 #828c83

> color #1.3 #818c82

> color #1.3 #808c82

> color #1.3 #7f8c83

> color #1.3 #7e8c83

> color #1.3 #7d8c83

> color #1.3 #7c8c83

> color #1.3 #7b8c84

> color #1.3 #7a8c84

> color #1.3 #7b8c84

> color #1.3 #698c77

> color #1.3 #688c76

> color #1.3 #678c73

> color #1.3 #638c6c

> color #1.3 #5d8c63

> color #1.3 #588c5b

> color #1.3 #538c53

> color #1.3 #518c4f

> color #1.3 #4f8c4b

> color #1.3 #4e8c4a

> color #1.3 #4d8c49

> color #1.3 #4c8c49

> color #1.3 #4c8c48

> color #1.3 #498c45

> color #1.3 #438c3f

> color #1.3 #3c8c38

> color #1.3 #368c31

> color #1.3 #308c2b

> color #1.3 #2d8c27

> color #1.3 #2b8c25

> color #1.3 #2a8c24

> color #1.3 #298c24

> color #1.3 #268c22

> color #1.3 #238c1f

> color #1.3 #208c1d

> color #1.3 #1e8c1b

> color #1.3 #1c8c19

> color #1.3 #1b8c19

> color #1.3 #1b8c18

> color #1.3 #1a8c18

> color #1.3 #1a8c17

> color #1.3 #198c17

> color #1.3 #178c15

> color #1.3 #158c13

> color #1.3 #128c11

> color #1.3 #0f8c0f

> color #1.3 #0c8c0c

> color #1.3 #0a8c0b

> color #1.3 #058c07

> color #1.3 #028c04

> color #1.3 #018c03

> color #1.3 #008c03

> color #1.3 #008c01

> color #1.3 #008d01

> color #1.3 #009701

> color #1.3 #00a202

> color #1.3 #00a602

> color #1.3 #00a702

> color #1.3 #00aa02

> color #1.3 #00ad02

> color #1.3 #00b202

> color #1.3 #00b802

> color #1.3 #00c002

> color #1.3 #00c402

> color #1.3 #00c602

> color #1.3 #00c6027e

> color #1.3 #00c6027d

> select #1.2

1 model selected  

> color #1.2 #888c85

> color #1.2 #888c86

> color #1.2 #8a8c87

> color #1.2 #8c8a89

> color #1.2 #8c8489

> color #1.2 #8c7c8b

> color #1.2 #8c768c

> color #1.2 #896d8c

> color #1.2 #886b8c

> color #1.2 #88698c

> color #1.2 #88688c

> color #1.2 #88678c

> color #1.2 #88658c

> color #1.2 #88618c

> color #1.2 #885e8c

> color #1.2 #885b8c

> color #1.2 #88588c

> color #1.2 #88568c

> color #1.2 #88548c

> color #1.2 #88538c

> color #1.2 #87508c

> color #1.2 #874c8c

> color #1.2 #86488c

> color #1.2 #86458c

> color #1.2 #86438c

> color #1.2 #86418c

> color #1.2 #86408c

> color #1.2 #863d8c

> color #1.2 #85368c

> color #1.2 #842e8c

> color #1.2 #81208c

> color #1.2 #811a8c

> color #1.2 #81198c

> color #1.2 #82198c

> color #1.2 #84178c

> color #1.2 #87138c

> color #1.2 #8a0e8c

> color #1.2 #8c0488

> color #1.2 #8c0086

> color #1.2 #8c0083

> color #1.2 #8c0080

> color #1.2 #8c007f

> color #1.2 #8c007e

> color #1.2 #8e0080

> color #1.2 #950086

> color #1.2 #a90099

> color #1.2 #bc00a9

> color #1.2 #c500b2

> color #1.2 #c900b6

> color #1.2 #ce00ba

> color #1.2 #e100cb

> color #1.2 #fc00e4

> color #1.2 #ff00e6

> color #1.2 #ff00e683

> color #1.2 #ff00e682

> select clear

> select #1.2

1 model selected  

> color #1.2 #ee54e782

> color #1.2 #ee53e682

> color #1.2 #ee51e382

> color #1.2 #ee47d482

> color #1.2 #ee40ce82

> color #1.2 #ee3ac982

> color #1.2 #ee35c582

> color #1.2 #ee31c282

> color #1.2 #ee2fc182

> color #1.2 #ee2ec182

> color #1.2 #ee2dc182

> color #1.2 #ee2ec182

> color #1.2 #ee2fc082

> color #1.2 #ee30c182

> color #1.2 #ee34c382

> color #1.2 #ee38c582

> color #1.2 #ee3cc782

> color #1.2 #ee41ca82

> color #1.2 #ee49ce82

> color #1.2 #ee4dd082

> color #1.2 #ee4fd182

> color #1.2 #ee51d182

> color #1.2 #ee50d082

> color #1.2 #ee4cce82

> color #1.2 #ee47c982

> color #1.2 #ee41c482

> color #1.2 #ee36bd82

> color #1.2 #ee33bb82

> color #1.2 #ee32bb82

> color #1.2 #ee32ba82

> color #1.2 #ee36ba82

> color #1.2 #ee3abc82

> color #1.2 #ee42bf82

> color #1.2 #ee44c082

> color #1.2 #ee46c182

> color #1.2 #ee4ac282

> color #1.2 #ee4cc482

> color #1.2 #ee4fc582

> color #1.2 #ee52c682

> color #1.2 #ee53c682

> color #1.2 #ee54c682

> color #1.2 #ee55c682

> color #1.2 #ee56c682

> color #1.2 #ee59c682

> color #1.2 #ee5dc682

> color #1.2 #ee61c682

> color #1.2 #ee66c682

> color #1.2 #ee69c682

> color #1.2 #ee6dc682

> color #1.2 #ee6fc582

> color #1.2 #ee6fc482

> color #1.2 #ee6ec382

> color #1.2 #ee6dc382

> color #1.2 #ee6bc082

> color #1.2 #ee68bc82

> color #1.2 #ee63b782

> color #1.2 #ee5db182

> color #1.2 #ee58ab82

> color #1.2 #ee54a782

> color #1.2 #ee51a482

> color #1.2 #ee4fa182

> color #1.2 #ee4ea182

> color #1.2 #ee4fa282

> color #1.2 #ee50a282

> color #1.2 #ee50a382

> color #1.2 #ee51a482

> color #1.2 #ee52a682

> color #1.2 #ee53a982

> color #1.2 #ee53aa82

> color #1.2 #ee54ab82

> color #1.2 #ee54ac82

> color #1.2 #ee55ae82

> color #1.2 #ee55af82

> color #1.2 #ee57b482

> color #1.2 #ee58b682

> color #1.2 #ee58b882

> color #1.2 #ee59ba82

> color #1.2 #ee5bbe82

> color #1.2 #ee5bc182

> color #1.2 #ee5cc482

> color #1.2 #ee5dc682

> color #1.2 #ee5dca82

> color #1.2 #ee5dcb82

> color #1.2 #ee5dcc82

> color #1.2 #ee5dcd82

> color #1.2 #ee5dce82

> color #1.2 #ee5ed082

> color #1.2 #ee5ed482

> color #1.2 #ee5fda82

> color #1.2 #ee5fe082

> color #1.2 #ee5fe582

> color #1.2 #ee5ee982

> color #1.2 #ee5eec82

> color #1.2 #ee5eed82

> color #1.2 #ee5dee82

> color #1.2 #ed5eee82

> color #1.2 #ee5eee82

> color #1.2 #ee5fed82

> color #1.2 #ee60ed82

> color #1.2 #ee61ed82

> color #1.2 #ee62ed82

> color #1.2 #ee64ed82

> color #1.2 #ed67ee82

> color #1.2 #ed6bee82

> color #1.2 #ee6fed82

> color #1.2 #ee73ec82

> color #1.2 #ee78e982

> color #1.2 #ee7ae282

> color #1.2 #ee79db82

> color #1.2 #ee74cb82

> color #1.2 #ee71c682

> color #1.2 #ee6ec082

> color #1.2 #ee6dbf82

> color #1.2 #ee6cbe82

> color #1.2 #ee6cbd82

> color #1.2 #ee6cbe82

> color #1.2 #ee6dbf82

> color #1.2 #ee6ec082

> color #1.2 #ee70c282

> color #1.2 #ee71c482

> color #1.2 #ee73c682

> color #1.2 #ee78cc82

> color #1.2 #ee7bcf82

> color #1.2 #ee7dd182

> color #1.2 #ee7ed382

> color #1.2 #ee7fd482

> color #1.2 #ee80d582

> color #1.2 #ee80d682

> color #1.2 #ee82d882

> color #1.2 #ee85dc82

> color #1.2 #ee88e082

> color #1.2 #ee8ce582

> color #1.2 #ee8de682

> color #1.2 #ee8ee782

> color #1.2 #ee8fe682

> color #1.2 #ee90e682

> color #1.2 #ee91e582

> color #1.2 #ee92e582

> color #1.2 #ee95e682

> color #1.2 #ee99e682

> color #1.2 #ee9be682

> color #1.2 #ee9ce582

> color #1.2 #ee9be682

> color #1.2 #ee9ae682

> select #1.3

1 model selected  

> color #1.2 #ee9ee482

> color #1.3 #57c8367d

> color #1.3 #58c8397d

> color #1.3 #5bc83f7d

> color #1.3 #60c8487d

> color #1.3 #63c84f7d

> color #1.3 #66c8547d

> color #1.3 #6ac85c7d

> color #1.3 #6bc85e7d

> color #1.3 #6bc8607d

> color #1.3 #6cc8627d

> color #1.3 #6dc8637d

> color #1.3 #6dc8647d

> color #1.3 #6ec8657d

> color #1.3 #6ec8667d

> color #1.3 #70c8687d

> color #1.3 #74c86d7d

> color #1.3 #79c8737d

> color #1.3 #7dc8777d

> color #1.3 #82c87d7d

> color #1.3 #83c87f7d

> color #1.3 #84c8807d

> color #1.3 #85c8817d

> color #1.3 #86c8827d

> color #1.3 #87c8837d

> color #1.3 #89c8857d

> color #1.3 #8cc8887d

> color #1.3 #91c88d7d

> color #1.3 #93c88f7d

> color #1.3 #94c8907d

> color #1.3 #94c88f7d

> color #1.3 #93c88f7d

> color #1.3 #93c88e7d

> color #1.3 #93c88d7d

> color #1.3 #92c88d7d

> color #1.3 #91c88c7d

> color #1.3 #90c88b7d

> color #1.3 #8fc88a7d

> color #1.3 #8fc8897d

> color #1.3 #8dc8887d

> color #1.3 #8ac8857d

> color #1.3 #87c8827d

> color #1.3 #83c87e7d

> color #1.3 #80c87b7d

> color #1.3 #7ec8797d

> color #1.3 #7dc8787d

> color #1.3 #7cc8777d

> color #1.3 #7cc8787d

> color #1.3 #7dc8787d

> select #1.1

1 model selected  

> color #1.1 #dfce3b7d

> color #1.1 #dfce3c7d

> color #1.1 #dfce407d

> color #1.1 #dfce457d

> color #1.1 #dfcf497d

> color #1.1 #dfcf4d7d

> color #1.1 #dfcf4f7d

> color #1.1 #dfcf517d

> color #1.1 #dfcf537d

> color #1.1 #dfcf547d

> color #1.1 #dfd0587d

> color #1.1 #dfd0597d

> color #1.1 #dfd05b7d

> color #1.1 #dfd05d7d

> color #1.1 #dfd05e7d

> color #1.1 #dfd05f7d

> color #1.1 #dfd0607d

> color #1.1 #dfd0617d

> color #1.1 #dfd1627d

> color #1.1 #dfd2677d

> color #1.1 #dfd2687d

> color #1.1 #dfd26a7d

> color #1.1 #dfd26b7d

> color #1.1 #dfd36c7d

> color #1.1 #dfd36d7d

> color #1.1 #dfd36f7d

> color #1.1 #dfd3707d

> color #1.1 #dfd3727d

> color #1.1 #dfd4757d

> color #1.1 #dfd5767d

> color #1.1 #dfd5777d

> color #1.1 #dfd6787d

> color #1.1 #dfd6797d

> color #1.1 #dfd77a7d

> color #1.1 #dfd87a7d

> color #1.1 #dfd87b7d

> color #1.1 #dfd97b7d

> color #1.1 #dfd97a7d

> color #1.1 #dfd9797d

> color #1.1 #dfd9767d

> select clear

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/angels normal 2
> .png" width 936 height 665 supersample 4 transparentBackground true

> save "/Users/nitsanyehishalom/Desktop/Studys/MS.c./Thesis/Angel 2 .cxs"

——— End of log from Sat Jun 24 00:48:56 2023 ———

opened ChimeraX session  

> delete label

Missing or invalid "atoms" argument: invalid atoms specifier  

> ~ribbon label

> cartoon hide label

Expected an atoms specifier or a keyword  

> ~label

> ui tool show Axes/Planes/Centroids

plane #1.2 to plane #1.3: distance: 0.000Å; angle: 48.6°  

> close #1.1-3

> select /A:143@CB

1 atom, 1 residue, 1 model selected  

> label sel atoms text R1

> ui mousemode right "move label"

> select clear

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select /A:144@CB

1 atom, 1 residue, 1 model selected  

> label sel atoms text R2

> select clear

> select add @@serial_number=1134

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1135

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 2 residues, 1 model selected  

> select add /A:143@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 1.9  

> close #1.2

> define plane sel padding 1

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.9  

> close #1.2

> define plane sel padding 0.8

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.7  

> color #1.2 #797979fe

> color #1.2 #797979ee

> color #1.2 #797979dd

> color #1.2 #797979cd

> color #1.2 #797979b6

> color #1.2 #797979a6

> color #1.2 #7979799f

> color #1.2 #79797999

> color #1.2 #79797993

> color #1.2 #7979798f

> color #1.2 #7979798d

> color #1.2 #79797989

> color #1.2 #79797988

> color #1.2 #79797986

> color #1.2 #79797985

> color #1.2 #79797984

> color #1.2 #79797985

> color #1.2 #79797986

> color #1.2 #79797987

> select clear

> select add /A:145@N

1 atom, 1 residue, 1 model selected  

> select add /A:144@C

2 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

3 atoms, 2 residues, 1 model selected  

> select add /A:144@N

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-17.8210001 23.99000025 14.84599996] with normal
[-0.65557133 -0.44475159 -0.61026409] and radius 2.6  

> color #1.3 #909090fe

> color #1.3 #909090f9

> color #1.3 #909090ef

> color #1.3 #909090c1

> color #1.3 #909090b5

> color #1.3 #909090aa

> color #1.3 #909090a1

> color #1.3 #9090909d

> color #1.3 #90909099

> color #1.3 #90909096

> color #1.3 #90909094

> color #1.3 #90909093

> color #1.3 #90909092

> color #1.3 #90909090

> color #1.3 #9090908c

> color #1.3 #9090908b

> color #1.3 #90909087

> color #1.3 #90909083

> color #1.3 #90909082

> ui mousemode right translate

> select add /A:143@N

5 atoms, 3 residues, 1 model selected  

> select clear

> select /A:143@N

1 atom, 1 residue, 1 model selected  

> select add /A:143@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:143@C

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-21.4053332 25.57400004 15.30566661] with normal
[-0.48407413 -0.87205222 0.07209138] and radius 2.1  

> color #1.5 #79797990

> color #1.5 #7979798f

> color #1.5 #7979798e

> color #1.5 #7979798d

> color #1.5 #79797989

> color #1.5 #79797987

> color #1.5 #79797983

> color #1.5 #79797982

> color #1.5 #79797981

> color #1.5 #79797982

> color #1.5 #868c8682

> color #1.5 #868c8582

> color #1.5 #858c8482

> color #1.5 #848c8382

> color #1.5 #838c7e82

> color #1.5 #828c7882

> color #1.5 #828c7182

> color #1.5 #828c6c82

> color #1.5 #828c6782

> color #1.5 #838c6282

> color #1.5 #848c5e82

> color #1.5 #858c5782

> color #1.5 #858c5582

> color #1.5 #878c4e82

> color #1.5 #8a8c4082

> color #1.5 #8b8c3982

> color #1.5 #8c8b3582

> color #1.5 #8c892f82

> color #1.5 #8c872882

> color #1.5 #8c862682

> color #1.5 #8c862382

> color #1.5 #8c852382

> color #1.5 #8c852282

> color #1.5 #8c842282

> color #1.5 #8c842082

> color #1.5 #8c841f82

> color #1.5 #8c841e82

> color #1.5 #8c831d82

> color #1.5 #8c831c82

> color #1.5 #8c831b82

> color #1.5 #8c831a82

> color #1.5 #8c831982

> color #1.5 #8c831882

> color #1.5 #8c831782

> color #1.5 #8c831682

> color #1.5 #8c821482

> color #1.5 #8c821382

> color #1.5 #8c821282

> color #1.5 #8c821182

> color #1.5 #8c840582

> color #1.5 #8c860682

> color #1.5 #8c8a0982

> color #1.5 #868c0d82

> color #1.5 #778c1482

> color #1.5 #678c1982

> color #1.5 #5d8c1b82

> color #1.5 #538c1b82

> color #1.5 #4e8c1a82

> color #1.5 #458c1682

> color #1.5 #3c8c1082

> color #1.5 #368c0c82

> color #1.5 #328c0982

> color #1.5 #2f8c0782

> color #1.5 #278c0382

> color #1.5 #228c0082

> color #1.5 #248c0082

> color #1.5 #228c0082

> color #1.5 #1f8c0082

> color #1.5 #208c0282

> color #1.5 #228c0482

> color #1.5 #298c1282

> color #1.5 #338c2182

> color #1.5 #428c3682

> color #1.5 #598c5182

> color #1.5 #658c5e82

> color #1.5 #6b8c6382

> color #1.5 #6c8c6482

> color #1.5 #6d8c6582

> color #1.5 #6e8c6682

> color #1.5 #6f8c6682

> color #1.5 #718c6882

> color #1.5 #738c6a82

> color #1.5 #768c6c82

> color #1.5 #778c6d82

> color #1.5 #768c6c82

> color #1.5 #758c6c82

> color #1.5 #758c6b82

> color #1.5 #748c6b82

> color #1.5 #738c6a82

> color #1.5 #738c6982

> color #1.5 #728c6982

> color #1.5 #718c6882

> color #1.5 #6f8c6782

> color #1.5 #6e8c6582

> color #1.5 #6a8c6382

> color #1.5 #688c6082

> color #1.5 #678c6082

> color #1.5 #678c5f82

> color #1.5 #668c5f82

> color #1.5 #668c5e82

> color #1.5 #658c5e82

> color #1.5 #658c5d82

> color #1.5 #648c5c82

> color #1.5 #648c5b82

> color #1.5 #618c5982

> color #1.5 #5e8c5582

> color #1.5 #5a8c5282

> color #1.5 #588c4f82

> color #1.5 #578c4f82

> color #1.5 #578c4e82

> color #1.5 #578c4f82

> color #1.5 #588d4f82

> color #1.5 #5b925282

> color #1.5 #639e5982

> color #1.5 #6dae6282

> color #1.5 #71b66682

> color #1.5 #72b76782

> color #1.5 #73b96882

> color #1.5 #73b86782

> color #1.5 #72b86782

> select #1.2

1 model selected  

> color #1.2 #8c868887

> color #1.2 #8c868987

> color #1.2 #8c858987

> color #1.2 #8c858a87

> color #1.2 #8c848a87

> color #1.2 #8c838b87

> color #1.2 #8c828b87

> color #1.2 #8c828c87

> color #1.2 #8b818c87

> color #1.2 #8b7f8c87

> color #1.2 #8a7f8c87

> color #1.2 #8a7d8c87

> color #1.2 #897d8c87

> color #1.2 #897c8c87

> color #1.2 #897b8c87

> color #1.2 #897a8c87

> color #1.2 #88798c87

> color #1.2 #88778c87

> color #1.2 #88768c87

> color #1.2 #88758c87

> color #1.2 #88748c87

> color #1.2 #88738c87

> color #1.2 #88728c87

> color #1.2 #88718c87

> color #1.2 #88708c87

> color #1.2 #886e8c87

> color #1.2 #886d8c87

> color #1.2 #886c8c87

> color #1.2 #886b8c87

> color #1.2 #886a8c87

> color #1.2 #88698c87

> color #1.2 #88688c87

> color #1.2 #88678c87

> color #1.2 #88668c87

> color #1.2 #8c699087

> color #1.2 #936e9787

> color #1.2 #9b74a087

> color #1.2 #a179a687

> color #1.2 #a67cab87

> color #1.2 #a77dac87

> color #1.2 #a97eae87

> color #1.2 #aa80b087

> color #1.2 #ab80b187

> color #1.2 #ae83b487

> color #1.2 #b386b887

> color #1.2 #b588bb87

> color #1.2 #b588ba87

> color #1.2 #b487ba87

> select clear

> select #1.3

1 model selected  

> color #1.3 #9da19282

> color #1.3 #9da19182

> color #1.3 #9da19082

> color #1.3 #9ea18e82

> color #1.3 #9ea18c82

> color #1.3 #a0a18882

> color #1.3 #a0a18782

> color #1.3 #a1a18682

> color #1.3 #a1a18482

> color #1.3 #a1a18082

> color #1.3 #a1a07c82

> color #1.3 #a19f7982

> color #1.3 #a19f7882

> color #1.3 #a19f7782

> color #1.3 #a19f7582

> color #1.3 #a19e7282

> color #1.3 #a19e7182

> color #1.3 #a19e7082

> color #1.3 #a19e6d82

> color #1.3 #a19f6982

> color #1.3 #a19f6782

> color #1.3 #a19e6582

> color #1.3 #a19f6482

> color #1.3 #a19e6482

> color #1.3 #a19e6382

> color #1.3 #a19e6282

> color #1.3 #a19e5f82

> color #1.3 #a19d5b82

> color #1.3 #a19d5a82

> color #1.3 #a19c5982

> color #1.3 #a19d5982

> color #1.3 #b3ae6282

> color #1.3 #bdb76882

> color #1.3 #c7c16d82

> color #1.3 #ccc57082

> color #1.3 #cec77182

> color #1.3 #cec87182

> color #1.3 #cfc87282

> color #1.3 #cfc97282

> color #1.3 #d5cf7582

> color #1.3 #ddd67982

> color #1.3 #ded77a82

> color #1.3 #e0d97b82

> select clear

> select /A:144@C

1 atom, 1 residue, 1 model selected  

> select add #1.3

1 atom, 1 residue, 2 models selected  

> select clear

> select add /A:144@C

1 atom, 1 residue, 1 model selected  

> select add /A:144@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:144@N

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-18.20399984 24.4393336 14.95166651] with normal
[-0.61916877 -0.45669455 -0.63879584] and radius 2.1  

> close #1.7

> select clear

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 residue, 1 model selected  

> select add /A:144@N

3 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-19.68624973 25.13775015 15.13399982] with normal [
0.06672232 -0.739718 0.66960094] and radius 2.7  

> select clear

> select #1.2

1 model selected  

> close #1.2

> color #1.7 #797979fe

> color #1.7 #797979f2

> color #1.7 #797979e7

> color #1.7 #797979c7

> color #1.7 #797979bd

> color #1.7 #797979af

> color #1.7 #797979a4

> color #1.7 #7979799f

> color #1.7 #7979799c

> color #1.7 #79797999

> color #1.7 #79797996

> color #1.7 #79797992

> color #1.7 #7979798f

> color #1.7 #7979798c

> color #1.7 #7979798a

> color #1.7 #79797988

> color #1.7 #79797987

> color #1.7 #79797986

> color #1.7 #79797985

> color #1.7 #79797984

> color #1.7 #79797983

> color #1.7 #79797982

> color #1.7 #79797980

> color #1.7 #79797975

> color #1.7 #79797974

> color #1.7 #79797972

> color #1.7 #79797971

> color #1.7 #79797972

> color #1.7 #79797973

> color #1.7 #79797974

> color #1.7 #79797976

> color #1.7 #79797979

> color #1.7 #7979797b

> color #1.7 #7979797c

> color #1.7 #7979797d

> color #1.7 #7979797e

> color #1.7 #79797980

> color #1.7 #79797973

> color #1.7 #7979796e

> color #1.7 #7979796a

> color #1.7 #79797964

> color #1.7 #79797961

> color #1.7 #7979795e

> color #1.7 #7979795a

> color #1.7 #79797956

> color #1.7 #79797953

> color #1.7 #79797951

> color #1.7 #79797950

> color #1.7 #7979794f

> color #1.7 #7979794d

> color #1.7 #7979794c

> color #1.7 #7979794d

> color #1.7 #79797953

> color #1.7 #79797952

> select @@serial_number=1137

1 atom, 1 residue, 1 model selected  

> color sel magenta

> select clear

> select #1.7

1 model selected  

> close #1.7

> select #1.5

1 model selected  

> close #1.5

> select add /A:143@C

1 atom, 1 residue, 1 model selected  

> select clear

> select add /A:144@CA

1 atom, 1 residue, 1 model selected  

> select clear

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 residue, 1 model selected  

> select add /A:144@N

3 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-19.68624973 25.13775015 15.13399982] with normal [
0.06672232 -0.739718 0.66960094] and radius 2.7  

> select clear

> color #1.2 #797979fd

> color #1.2 #797979f4

> color #1.2 #797979e3

> color #1.2 #797979c3

> color #1.2 #797979bc

> color #1.2 #797979af

> color #1.2 #797979a8

> color #1.2 #797979a5

> color #1.2 #797979a2

> color #1.2 #797979a0

> color #1.2 #7979799f

> color #1.2 #7979799e

> color #1.2 #7979799d

> color #1.2 #7979799a

> color #1.2 #79797997

> color #1.2 #79797996

> color #1.2 #7979798d

> color #1.2 #79797985

> color #1.2 #79797981

> color #1.2 #7979797f

> color #1.2 #7979797e

> color #1.2 #7979797d

> color #1.2 #7979797c

> color #1.2 #7979797b

> color #1.2 #7979797a

> select add /A:143@C

1 atom, 1 residue, 1 model selected  

> select add /A:143@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-21.4053332 25.57400004 15.30566661] with normal
[-0.48407413 -0.87205222 0.07209138] and radius 2.1  

> color #1.5 #79797985

> color #1.5 #8c8b8685

> color #1.5 #8c8b8585

> color #1.5 #8b8c8385

> color #1.5 #878c7b85

> color #1.5 #808c6c85

> color #1.5 #7d8c6685

> color #1.5 #718c5185

> color #1.5 #6c8c4b85

> color #1.5 #6b8c4985

> color #1.5 #688c4685

> color #1.5 #668c4585

> color #1.5 #658c4585

> color #1.5 #648c4585

> color #1.5 #638c4585

> color #1.5 #618c4585

> color #1.5 #5e8c4485

> color #1.5 #5a8c4285

> color #1.5 #578c4185

> color #1.5 #538c3f85

> color #1.5 #518c3e85

> color #1.5 #508c3d85

> color #1.5 #4e8c3c85

> color #1.5 #4d8c3b85

> color #1.5 #4c8c3a85

> color #1.5 #4b8c3a85

> select add /A:144@CA

4 atoms, 2 residues, 1 model selected  

> select add /A:144@C

5 atoms, 2 residues, 1 model selected  

> select add /A:145@N

6 atoms, 3 residues, 1 model selected  

> select clear

> select add /A:145@N

1 atom, 1 residue, 1 model selected  

> select add /A:144@C

2 atoms, 2 residues, 1 model selected  

> select subtract /A:144@C

1 atom, 1 residue, 1 model selected  

> select add /A:144@CA

2 atoms, 1 bond, 2 residues, 1 model selected  

> select add /A:144@C

3 atoms, 1 bond, 2 residues, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-17.40433375 23.55533346 14.73433336] with normal
[0.70446608 0.43958588 0.5572179 ] and radius 2.1  

> select #1.2

1 model selected  

> select clear

> color #1.7 #8c8886

> color #1.7 #8c8a84

> color #1.7 #8c8c82

> color #1.7 #838c76

> color #1.7 #7f8c70

> color #1.7 #768c63

> color #1.7 #6f8c58

> color #1.7 #6b8c52

> color #1.7 #668c4b

> color #1.7 #648c49

> color #1.7 #608c46

> color #1.7 #5d8c43

> color #1.7 #5a8c41

> color #1.7 #5a8c40

> color #1.7 #588c3e

> color #1.7 #558c3c

> color #1.7 #518c39

> color #1.7 #4d8c37

> color #1.7 #498c34

> color #1.7 #458c31

> color #1.7 #428c30

> color #1.7 #408c2e

> color #1.7 #3f8c2e

> color #1.7 #3e8c2d

> color #1.7 #3c8c2d

> color #1.7 #3c8c2c

> color #1.7 #3a8c2c

> color #1.7 #398c2b

> color #1.7 #388c2b

> color #1.7 #378c2b

> color #1.7 #378c2a

> color #1.7 #368c2a

> color #1.7 #368c2b

> color #1.7 #378c2b

> color #1.7 #388c2c

> color #1.7 #3b8c2e

> color #1.7 #468c37

> color #1.7 #4c8c3c

> color #1.7 #5c8c48

> color #1.7 #6e8c57

> color #1.7 #808c62

> color #1.7 #8a8c66

> color #1.7 #8c8567

> color #1.7 #8c7e66

> color #1.7 #8c7964

> color #1.7 #8c7763

> color #1.7 #8c7561

> color #1.7 #8c6f5e

> color #1.7 #8c6c5b

> color #1.7 #8c6859

> color #1.7 #8c6256

> color #1.7 #8c5e53

> color #1.7 #8c584f

> color #1.7 #8c4e4a

> color #1.7 #8c4946

> color #1.7 #8c4442

> color #1.7 #8c3d3d

> color #1.7 #8c3739

> color #1.7 #8c3537

> color #1.7 #8c3336

> color #1.7 #8c3236

> color #1.7 #8c3135

> color #1.7 #8c3034

> color #1.7 #8c2f34

> color #1.7 #8c2e33

> color #1.7 #8c2f33

> color #1.7 #8c2f34

> color #1.7 #8c3034

> color #1.7 #8c3035

> color #1.7 #b33e44

> color #1.7 #be4148

> color #1.7 #bf4248

> color #1.7 #c04249

> color #1.7 #c14249

> color #1.7 #c24349

> color #1.7 #c4434a

> color #1.7 #c4444a

> color #1.7 #c4444a7d

> select #1.2

1 model selected  

> select add #1.3

2 models selected  

> close #1.2-3,5,7

> select add @@serial_number=1134

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1135

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 2 residues, 1 model selected  

> select clear

> select add @@serial_number=1133

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1134

2 atoms, 1 residue, 1 model selected  

> select add @@serial_number=1135

3 atoms, 1 residue, 1 model selected  

> select add /A:143@N

4 atoms, 2 residues, 1 model selected  

> select @@serial_number=1134

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1135

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 2 residues, 1 model selected  

> select add /A:143@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 0.8

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.7  

> close #1.2

> define plane sel padding 0.8 thickness 0.05

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.7  

> close #1.2

> define plane sel padding -0.2 thickness 0.05

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 1.7  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.4  

> close #1.3

> close #1.2

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-22.90225029 26.61450005 15.27474999] with normal
[-0.59150971 -0.64289728 0.48662033] and radius 2.4  

> select clear

> select add @@serial_number=1134

1 atom, 1 residue, 1 model selected  

> select add @@serial_number=1135

2 atoms, 1 bond, 1 residue, 1 model selected  

> select add @@serial_number=1133

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-24.31100019 27.76733335 15.14633338] with normal
[-0.55131359 -0.66745785 0.50055303] and radius 1.8  

> select clear

> select add #1.2

1 model selected  

> select add #1.3

2 models selected  

> color #1.2 #7979797b

> color #1.2 #7979797a

> color #1.3 #858c75

> color #1.3 #868c74

> color #1.3 #888c70

> color #1.3 #8c8b67

> color #1.3 #8c875c

> color #1.3 #8c8553

> color #1.3 #8c8448

> color #1.3 #8c8542

> color #1.3 #8c853e

> color #1.3 #8c863c

> color #1.3 #8c863b

> color #1.3 #8c863b86

> color #1.3 #8c863b87

> select clear

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 1 residue, 1 model selected  

> select clear

> select add /A:143@C

1 atom, 1 residue, 1 model selected  

> select add /A:143@CA

2 atoms, 1 bond, 1 residue, 1 model selected  

> select add /A:143@N

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-21.4053332 25.57400004 15.30566661] with normal
[-0.48407413 -0.87205222 0.07209138] and radius 1.8  

> close #1.2-3,5

> select clear

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@N

2 atoms, 1 residue, 1 model selected  

> select add /A:143@C

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-21.4053332 25.57400004 15.30566661] with normal
[-0.48407413 -0.87205222 0.07209138] and radius 1.8  

> select clear

> color #1.2 #868c87

> color #1.2 #858c85

> color #1.2 #878c80

> color #1.2 #888c77

> color #1.2 #898c6f

> color #1.2 #898c6c

> color #1.2 #898c6a

> color #1.2 #888c65

> color #1.2 #888c5d

> color #1.2 #898c4f

> color #1.2 #8a8c47

> color #1.2 #8c8a3b

> color #1.2 #8c8833

> color #1.2 #8c872f

> color #1.2 #8c872e

> color #1.2 #8c872e7b

> color #1.2 #8c872e7a

> select add /A:143@CA

1 atom, 1 residue, 1 model selected  

> select add /A:143@C

2 atoms, 1 residue, 1 model selected  

> select add /A:144@N

3 atoms, 2 residues, 1 model selected  

> select add /A:144@CA

4 atoms, 2 residues, 1 model selected  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-19.68624973 25.13775015 15.13399982] with normal [
0.06672232 -0.739718 0.66960094] and radius 2.4  

> color #1.3 #868c80

> color #1.3 #868c7f

> color #1.3 #838c7c

> color #1.3 #7f8c77

> color #1.3 #7d8c75

> color #1.3 #798c70

> color #1.3 #758c6c

> color #1.3 #738c69

> color #1.3 #708c67

> color #1.3 #6f8c66

> color #1.3 #6f8c65

> color #1.3 #6e8c65

> color #1.3 #6d8c65

> color #1.3 #6c8c64

> color #1.3 #6b8c64

> color #1.3 #6a8c64

> color #1.3 #698c64

> color #1.3 #698c647e

> color #1.3 #698c647d

> select clear

> select add /A:144@N

1 atom, 1 residue, 1 model selected  

> select add /A:144@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:144@C

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-18.20399984 24.4393336 14.95166651] with normal
[-0.61916877 -0.45669455 -0.63879584] and radius 1.8  

> color #1.5 #808c83

> color #1.5 #818c82

> color #1.5 #818c81

> color #1.5 #828c81

> color #1.5 #848c7f

> color #1.5 #848c7d

> color #1.5 #848c79

> color #1.5 #838c77

> color #1.5 #838c71

> color #1.5 #828c70

> color #1.5 #828c6f

> color #1.5 #828c6d

> color #1.5 #838c6a

> color #1.5 #838c67

> color #1.5 #838c64

> color #1.5 #838c61

> color #1.5 #838c60

> color #1.5 #828c60

> color #1.5 #818c60

> color #1.5 #7d8c61

> color #1.5 #7a8c61

> color #1.5 #778c61

> color #1.5 #748c61

> color #1.5 #738c60

> color #1.5 #708c5f

> color #1.5 #6c8c5d

> color #1.5 #6b8c5c

> color #1.5 #668c5b

> color #1.5 #648c59

> color #1.5 #628c58

> color #1.5 #608c57

> color #1.5 #5c8c55

> color #1.5 #588c53

> color #1.5 #578c53

> color #1.5 #528c50

> color #1.5 #508c4f

> color #1.5 #4c8c50

> color #1.5 #488c52

> color #1.5 #448c53

> color #1.5 #438c53

> color #1.5 #408c54

> color #1.5 #3f8c54

> color #1.5 #3e8c54

> color #1.5 #3f8c54

> color #1.5 #408c53

> color #1.5 #418c53

> color #1.5 #418c52

> color #1.5 #428c52

> color #1.5 #438c52

> color #1.5 #438c51

> color #1.5 #448c51

> color #1.5 #458c51

> color #1.5 #478c50

> color #1.5 #488c50

> color #1.5 #498c4f

> color #1.5 #4b8c4f

> color #1.5 #528c4f

> color #1.5 #568c50

> color #1.5 #628c54

> color #1.5 #698c56

> color #1.5 #718c57

> color #1.5 #748c57

> color #1.5 #7b8c57

> color #1.5 #808c56

> color #1.5 #848c55

> color #1.5 #888c53

> color #1.5 #8b8c51

> color #1.5 #8c8c51

> color #1.5 #8c894f

> color #1.5 #8c874e

> color #1.5 #8c844c

> color #1.5 #8c824a

> color #1.5 #8c7f47

> color #1.5 #8c7d44

> color #1.5 #8c793f

> color #1.5 #8c773b

> color #1.5 #8c7539

> color #1.5 #8c7335

> color #1.5 #8c7232

> color #1.5 #8c712e

> color #1.5 #8c702c

> color #1.5 #8c702b

> color #1.5 #8c712b

> color #1.5 #8c712a

> color #1.5 #8c7229

> color #1.5 #8c7329

> color #1.5 #8c732a

> color #1.5 #8c742a

> color #1.5 #8c752b

> color #1.5 #8c762c

> color #1.5 #8c772d

> color #1.5 #8c792e

> color #1.5 #8c7a2f

> color #1.5 #8c7b30

> color #1.5 #8c7b31

> color #1.5 #8c7c31

> color #1.5 #8c7d31

> color #1.5 #8c7e32

> color #1.5 #8c7f33

> color #1.5 #8c8034

> color #1.5 #8c8135

> color #1.5 #8c8134

> color #1.5 #8c8234

> color #1.5 #8c8235

> color #1.5 #8c8336

> color #1.5 #8c853c

> color #1.5 #8c853f

> color #1.5 #8c8541

> color #1.5 #8c8643

> color #1.5 #8c8543

> color #1.5 #8c85437f

> color #1.5 #8c854380

> select clear

> select #1.2

1 model selected  

> select clear

> select /A:144@CA

1 atom, 1 residue, 1 model selected  

> select add #1.3

1 atom, 1 residue, 2 models selected  

> select /A:143@CA

1 atom, 1 residue, 1 model selected  

> select clear

> select #1.5

1 model selected  

> close #1.5

> select add /A:144@CA

1 atom, 1 residue, 1 model selected  

> select add /A:144@C

2 atoms, 1 residue, 1 model selected  

> select add /A:145@N

3 atoms, 2 residues, 1 model selected  

> select add /A:145@CA

4 atoms, 2 residues, 1 model selected  

> select clear

> style stick

Changed 61 atom styles  

> undo

> style stick

Changed 61 atom styles  

> select /A:144@CA

1 atom, 1 residue, 1 model selected  

> select subtract /A:144@CA

Nothing selected  

> select /A:144@CA

1 atom, 1 residue, 1 model selected  

> style sel ball

Changed 1 atom style  

> undo

[Repeated 4 time(s)]

> style sel ball

Changed 1 atom style  

> select clear

> style ball

Changed 61 atom styles  

> select add /A:144@C

1 atom, 1 residue, 1 model selected  

> select add /A:144@CA

2 atoms, 1 residue, 1 model selected  

> select add /A:144@N

3 atoms, 1 residue, 1 model selected  

> define plane sel padding 0.5 thickness 0.05

Plane 'plane' placed at [-18.20399984 24.4393336 14.95166651] with normal
[-0.61916877 -0.45669455 -0.63879584] and radius 1.8  

> color #1.5 #878c88

> color #1.5 #888c88

> color #1.5 #8a8c88

> color #1.5 #8c8b87

> color #1.5 #8c7a77

> color #1.5 #8c716e

> color #1.5 #8c6663

> color #1.5 #8c605c

> color #1.5 #8c5a57

> color #1.5 #8c5653

> color #1.5 #8c5652

> color #1.5 #8c5552

> color #1.5 #8c5551

> color #1.5 #8c5552

> color #1.5 #8c5652

> color #1.5 #8c5653

> color #1.5 #8c5753

> color #1.5 #8c5855

> color #1.5 #8c5955

> color #1.5 #8c5a56

> color #1.5 #8c5b57

> color #1.5 #8c5c58

> color #1.5 #8c5e5a

> color #1.5 #8c5f5b

> color #1.5 #8c5f5c

> color #1.5 #8c615d

> color #1.5 #8c625e

> color #1.5 #8c6360

> color #1.5 #8c6460

> color #1.5 #8c6461

> color #1.5 #8c6662

> color #1.5 #8c6663

> color #1.5 #8c6763

> color #1.5 #8c6963

> color #1.5 #8c6c60

> color #1.5 #8c6e5d

> color #1.5 #8c7059

> color #1.5 #8c754f

> color #1.5 #8c764b

> color #1.5 #8c7748

> color #1.5 #8c7846

> color #1.5 #8c7a41

> color #1.5 #8c7a40

> color #1.5 #8c7a3f

> color #1.5 #8c7a3e

> color #1.5 #8c7a3d

> color #1.5 #8c7a3c

> color #1.5 #8c7b3c

> color #1.5 #8c7b3b

> color #1.5 #8c7c3a

> color #1.5 #8c7d39

> color #1.5 #8c7e39

> color #1.5 #8c7f38

> color #1.5 #8c8037

> color #1.5 #8c8135

> color #1.5 #8c8233

> color #1.5 #8c8430

> color #1.5 #8c862c

> color #1.5 #8c8928

> color #1.5 #8c8927

> color #1.5 #8c8a26

> color #1.5 #8c8a27

> color #1.5 #8c8a28

> color #1.5 #8c8a29

> color #1.5 #8c8a2a

> color #1.5 #8c8a2b

> color #1.5 #8c8a2c

> color #1.5 #8c8a2e

> color #1.5 #8c8a2f

> color #1.5 #8c8933

> color #1.5 #8c8936

> color #1.5 #8c883e

> color #1.5 #8c8848

> color #1.5 #8c8755

> color #1.5 #8c856b

> color #1.5 #8c8476

> color #1.5 #8c837e

> color #1.5 #8c8382

> color #1.5 #8c8384

> color #1.5 #8c8485

> color #1.5 #8c8487

> color #1.5 #8c8589

> color #1.5 #8a848c

> color #1.5 #807c8c

> color #1.5 #78758c

> color #1.5 #71708c

> color #1.5 #6b6a8c

> color #1.5 #65648c

> color #1.5 #5e5e8c

> color #1.5 #5a5a8c

> color #1.5 #57588c

> color #1.5 #53558c

> color #1.5 #50528c

> color #1.5 #4b4d8c

> color #1.5 #484b8c

> color #1.5 #47498c

> color #1.5 #45488c

> color #1.5 #44478c

> color #1.5 #44468c

> color #1.5 #43468c

> color #1.5 #43458c

> color #1.5 #43468c

> color #1.5 #44468c

> color #1.5 #44478c

> color #1.5 #45478c

> color #1.5 #45488c

> color #1.5 #46488c

> color #1.5 #47498c

> color #1.5 #474a8c

> color #1.5 #484a8c

> color #1.5 #474a8c

> color #1.5 #47498c

> color #1.5 #46498c

> color #1.5 #46488c

> color #1.5 #45488c

> color #1.5 #45478c

> color #1.5 #44478c

> color #1.5 #44468c

> color #1.5 #43468c

> color #1.5 #44468c

> color #1.5 #44478c

> color #1.5 #45478c

> color #1.5 #45488c

> color #1.5 #46488c

> color #1.5 #46498c

> color #1.5 #47498c

> color #1.5 #474a8c

> color #1.5 #484a8c

> color #1.5 #484b8c

> color #1.5 #484c8c

> color #1.5 #494d8c

> color #1.5 #4a4f8c

> color #1.5 #4c548c

> color #1.5 #4d5c8c

> color #1.5 #4d618c

> color #1.5 #4c638c

> color #1.5 #496a8c

> color #1.5 #466e8c

> color #1.5 #44728c

> color #1.5 #40768c

> color #1.5 #3f778c

> color #1.5 #3f788c

> color #1.5 #3e798c

> color #1.5 #3e7a8c

> color #1.5 #3e7b8c

> color #1.5 #3e7c8c

> color #1.5 #3d7d8c

> color #1.5 #3d7e8c

> color #1.5 #3c7f8c

> color #1.5 #3c818c

> color #1.5 #3b838c

> color #1.5 #3b848c

> color #1.5 #39858c

> color #1.5 #37878c

> color #1.5 #36878c

> color #1.5 #34898c

> color #1.5 #328a8c

> color #1.5 #318a8c

> color #1.5 #308a8c

> color #1.5 #2f8a8c

> color #1.5 #2f8b8c

> color #1.5 #308b8c

> color #1.5 #318b8c

> color #1.5 #328b8c

> color #1.5 #338b8c

> color #1.5 #348b8c

> color #1.5 #358b8c

> color #1.5 #368b8c

> color #1.5 #378b8c

> color #1.5 #388b8c

> color #1.5 #398b8c

> color #1.5 #3a8b8c

> color #1.5 #3a8c8c

> color #1.5 #3a8c8b

> color #1.5 #3a8c8a

> color #1.5 #3b8c8a

> color #1.5 #3b8c89

> color #1.5 #3b8c88

> color #1.5 #3c8c88

> color #1.5 #4eb7b2

> color #1.5 #52bfba

> color #1.5 #53c2bd

> color #1.5 #54c4bf

> color #1.5 #55c7c2

> color #1.5 #59d0ca

> color #1.5 #5edbd5

> color #1.5 #65ece6

> color #1.5 #67f0ea

> color #1.5 #68f3ed

> color #1.5 #68f4ed

> color #1.5 #68f4ee

> color #1.5 #69f5ee

> color #1.5 #69f6ef

> color #1.5 #6cfef7

> color #1.5 #6dfff8

> color #1.5 #6dfff87e

> color #1.5 #6dfff87d

> select clear

> select #1.3

1 model selected  

> color #1.3 #819b7b7d

> color #1.3 #87a2817d

> color #1.3 #8eab877d

> color #1.3 #9bbb947d

> color #1.3 #a4c69d7d

> color #1.3 #b0d4a87d

> color #1.3 #b6dcae7d

> color #1.3 #bde4b57d

> color #1.3 #c2e9b97d

> color #1.3 #c4edbc7d

> color #1.3 #cbf4c27d

> color #1.3 #cdf7c47d

> color #1.3 #cffac67d

> color #1.3 #d3fec97d

> color #1.3 #d3ffca7d

> select clear

> select #1.2

1 model selected  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #9c984c7a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #9d994c7a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #aea9547a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #c1bc5d7a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #d1cb657a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #e5de6f7a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #ece5727a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #f2eb757a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #fbf4797a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #fef77b7a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  

> color #1.2 #fff87b7a

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Model Number: Z15G000MKAE/A
      Chip: Apple M1 Pro
      Total Number of Cores: 8 (6 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 8422.100.650
      OS Loader Version: 8422.100.650

Software:

    System Software Overview:

      System Version: macOS 13.3.1 (a) (22E772610a)
      Kernel Version: Darwin 22.4.0
      Time since boot: 19 days, 20 hours, 51 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.19.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-QScore: 1.0
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Component: Unassigned → General Controls
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Item table column sorting: 'QCxTableModel' object has no attribute 'sourceModel'

comment:2 by Eric Pettersen, 2 years ago

Resolution: → duplicate
Status: accepted → closed

Fixed on 3/9/23

Note: See TracTickets for help on using tickets.