![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9400 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.4.1-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f3bf5e00 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 190000,
"procRole" : "Background",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 1719,
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"train" : "macOS 13.4.1",
"build" : "22F770820d",
"releaseType" : "User"
},
"captureTime" : "2023-07-18 19:52:42.1112 -0400",
"incident" : "007CEA70-C76A-42C4-BA94-3610159EDCB0",
"pid" : 8940,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-07-18 11:05:17.9567 -0400",
"procStartAbsTime" : 4050447112123,
"procExitAbsTime" : 4711173795510,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"4009FAF6-E9AB-50BF-9F04-0B89775FDB68","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "99DA3F3A-511F-2832-8536-7AEDB6E711CB",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 137,
"sleepWakeUUID" : "5613D3CE-5D29-4642-B2CA-4C7312E53F08",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105554055790568\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600038000000-600040000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/TEST/Downloads/cryosparc_P79_J101_005_volume_map.mrc
Opened cryosparc_P79_J101_005_volume_map.mrc as #1, grid size 416,416,416,
pixel 0.855, shown at level 0.0952, step 2, values float32
> open /Users/TEST/Downloads/cryosparc_P79_J111_007_volume_map.mrc
Opened cryosparc_P79_J111_007_volume_map.mrc as #2, grid size 416,416,416,
pixel 0.855, shown at level 0.0103, step 2, values float32
> volume #2 step 1
> volume #1 step 1
> volume #2 level 0.05815
> volume #2 level 0.06453
> volume #2 level 0.08686
> fitmap #1 inMap #2
Fit map cryosparc_P79_J101_005_volume_map.mrc in map
cryosparc_P79_J111_007_volume_map.mrc using 720258 points
correlation = 0.1977, correlation about mean = -0.01244, overlap = 740.7
steps = 136, shift = 1.03, angle = 1.31 degrees
Position of cryosparc_P79_J101_005_volume_map.mrc (#1) relative to
cryosparc_P79_J111_007_volume_map.mrc (#2) coordinates:
Matrix rotation and translation
0.99978735 0.01366059 -0.01544791 0.43012055
-0.01381461 0.99985548 -0.00990814 4.90106160
0.01531033 0.01011944 0.99983158 -5.42570722
Axis 0.43682331 -0.67087086 -0.59926429
Axis point 348.66496096 0.00000000 18.76428693
Rotation angle (degrees) 1.31357002
Shift along axis 0.15133989
> volume #2 level 0.1347
> ui mousemode right zoom
> volume #2 level 0.08367
> fitmap #1 inMap #2
Fit map cryosparc_P79_J101_005_volume_map.mrc in map
cryosparc_P79_J111_007_volume_map.mrc using 720258 points
correlation = 0.1978, correlation about mean = -0.01243, overlap = 740.7
steps = 144, shift = 0.0186, angle = 0.00918 degrees
Position of cryosparc_P79_J101_005_volume_map.mrc (#1) relative to
cryosparc_P79_J111_007_volume_map.mrc (#2) coordinates:
Matrix rotation and translation
0.99978411 0.01375635 -0.01557256 0.44172032
-0.01391209 0.99985384 -0.00993721 4.93357945
0.01543359 0.01015172 0.99982936 -5.46860748
Axis 0.43522831 -0.67175084 -0.59943901
Axis point 348.47634333 0.00000000 19.16828835
Rotation angle (degrees) 1.32242435
Shift along axis 0.15620973
> volume #2 level 0.09643
> set bgColor white
> volume #1 color darkgrey
> volume #1 color #929292
> volume #1 color silver
> volume #1 color darkgrey
> lighting simple
> graphics silhouettes true
> lighting flat
> lighting soft
> lighting simple
> lighting soft
> hide #!2 models
> show #!2 models
> volume #2 level 0.02943
> open /Users/TEST/Downloads/emd_12245.map
Opened emd_12245.map as #3, grid size 384,384,384, pixel 1.09, shown at level
0.0174, step 2, values float32
> volume #3 step 1
> volume #3 level 0.03549
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.13916,-0.32246,0.9363,99.369,0.92494,0.29541,0.23921,-105.77,-0.35373,0.89931,0.25714,56.798
> view matrix models
> #3,-0.77492,-0.52829,-0.34701,541.7,0.25191,0.24538,-0.93613,291.4,0.57969,-0.81284,-0.057069,260.52
> view matrix models
> #3,0.84968,-0.41805,0.32138,43.653,-0.51896,-0.55494,0.65017,269.37,-0.093457,-0.71922,-0.68847,514.99
> view matrix models
> #3,0.87084,-0.36762,0.32633,28.516,-0.48579,-0.54223,0.68556,252.59,-0.07508,-0.75554,-0.65078,510.23
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.87084,-0.36762,0.32633,8.3644,-0.48579,-0.54223,0.68556,259.14,-0.07508,-0.75554,-0.65078,478.85
> fitmap #3 inMap #1
Fit map emd_12245.map in map cryosparc_P79_J101_005_volume_map.mrc using
256681 points
correlation = 0.8383, correlation about mean = 0.1984, overlap = 1397
steps = 208, shift = 10.8, angle = 16.7 degrees
Position of emd_12245.map (#3) relative to
cryosparc_P79_J101_005_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.96506099 -0.22229703 0.13871311 -0.50927855
-0.23464525 -0.49758080 0.83507781 157.35303654
-0.11661433 -0.83844939 -0.53235676 482.50793320
Axis -0.98853446 0.15081917 -0.00729396
Axis point 0.00000000 213.48631898 198.16635961
Rotation angle (degrees) 122.17034851
Shift along axis 20.71589967
> select subtract #3
Nothing selected
> hide #!1 models
> show #!2 models
> hide #!2 models
> volume #3 level 0.04015
> ui mousemode right zoom
> volume #2 level 0.08367
> volume #2 level 0.05815
> volume #2 level 0.09643
> volume #1 level 0.06773
> volume #1 level 0.094
> open /Users/TEST/Downloads/emd_8621.map
Opened emd_8621.map as #4, grid size 220,220,220, pixel 1.45, shown at level
0.0362, step 1, values float32
> select add #4
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.95548,0.27972,-0.093882,270.11,0.00131,-0.31416,-0.94937,363.28,-0.29506,-0.90723,0.2998,303.38
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.95548,0.27972,-0.093882,275.87,0.00131,-0.31416,-0.94937,362.81,-0.29506,-0.90723,0.2998,323.54
> fitmap #4 inMap #1
Fit map emd_8621.map in map cryosparc_P79_J101_005_volume_map.mrc using 106417
points
correlation = 0.863, correlation about mean = 0.2831, overlap = 579.7
steps = 256, shift = 29.3, angle = 23.5 degrees
Position of emd_8621.map (#4) relative to
cryosparc_P79_J101_005_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.83817720 0.50989467 0.19356240 201.66032416
-0.25878830 -0.05941616 -0.96410494 382.25154923
-0.48009123 -0.85818246 0.18175605 358.37498314
Axis 0.10308044 0.65557863 -0.74805821
Axis point 195.77647846 310.94947222 0.00000000
Rotation angle (degrees) 149.08368721
Shift along axis 3.29783578
> select subtract #4
Nothing selected
> volume #4 level 0.0273
> fitmap #1 inMap #4
Fit map cryosparc_P79_J101_005_volume_map.mrc in map emd_8621.map using 734973
points
correlation = 0.8947, correlation about mean = 0.3414, overlap = 3546
steps = 60, shift = 0.339, angle = 0.115 degrees
Position of cryosparc_P79_J101_005_volume_map.mrc (#1) relative to
emd_8621.map (#4) coordinates:
Matrix rotation and translation
-0.83754988 -0.26068114 -0.48016201 440.46198998
0.51025508 -0.05902794 -0.85799502 227.46858597
0.19532014 -0.96361873 0.18245272 263.99072156
Axis -0.10250502 -0.65553759 0.74817324
Axis point 195.74623296 311.11326600 0.00000000
Rotation angle (degrees) 148.98834867
Shift along axis 3.24702243
> volume #1 level 0.08803
> fitmap #1 inMap #3
Fit map cryosparc_P79_J101_005_volume_map.mrc in map emd_12245.map using
812426 points
correlation = 0.8263, correlation about mean = 0.2734, overlap = 3460
steps = 44, shift = 0.154, angle = 0.188 degrees
Position of cryosparc_P79_J101_005_volume_map.mrc (#1) relative to
emd_12245.map (#3) coordinates:
Matrix rotation and translation
0.96540414 -0.23403933 -0.11498012 93.26961217
-0.22111200 -0.50101222 -0.83671753 483.11572484
0.13821837 0.83319406 -0.53542818 126.60440917
Axis 0.98867062 -0.14990608 0.00765362
Axis point 0.00000000 213.45829718 198.18426579
Rotation angle (degrees) 122.37905635
Shift along axis 20.75992253
> volume #1 level 0.094
> fitmap #1 inMap #3
Fit map cryosparc_P79_J101_005_volume_map.mrc in map emd_12245.map using
734973 points
correlation = 0.8311, correlation about mean = 0.2658, overlap = 3304
steps = 60, shift = 0.0427, angle = 0.0471 degrees
Position of cryosparc_P79_J101_005_volume_map.mrc (#1) relative to
emd_12245.map (#3) coordinates:
Matrix rotation and translation
0.96541174 -0.23410758 -0.11477716 93.23956972
-0.22108919 -0.50170538 -0.83630812 483.15995855
0.13820175 0.83275768 -0.53611093 126.85344304
Axis 0.98867819 -0.14985313 0.00771150
Axis point 0.00000000 213.44072426 198.18735429
Rotation angle (degrees) 122.42548396
Shift along axis 20.75912570
> hide #!3 models
> show #!3 models
> hide #!1 models
> show #!1 models
> volume #1 level 0.09996
> volume #1 level 0.06893
> volume #1 level 0.09041
> volume #4 level 0.02634
> volume #1 level 0.09758
> open /Users/TEST/Downloads/cryosparc_P79_J111_006_volume_map.mrc
Opened cryosparc_P79_J111_006_volume_map.mrc as #5, grid size 416,416,416,
pixel 0.855, shown at level 0.00685, step 2, values float32
> volume #5 level 0.03749
> volume #5 level 0.05111
> volume #2 level 0.07344
> volume #5 level 0.08346
> volume #5 level 0.03409
> volume #5 level 0.04771
> volume #2 level 0.04059
> volume #2 level 0.08658
> volume #1 level 0.07423
> volume #1 level 0.09512
> hide #!2 models
> show #!2 models
> hide #!1 models
> volume #5 step 1
> volume #5 level 0.06376
> open /Users/TEST/Downloads/cryosparc_P79_J106_007_volume_map.mrc
Opened cryosparc_P79_J106_007_volume_map.mrc as #6, grid size 416,416,416,
pixel 0.855, shown at level 0.093, step 2, values float32
> volume flip #6
Opened cryosparc_P79_J106_007_volume_map.mrc z flip as #7, grid size
416,416,416, pixel 0.855, shown at step 1, values float32
> volume #7 level 0.1502
> volume #7 level 0.1426
> volume #7 level 0.1159
> volume #7 level 0.1375
> volume #7 level 0.1121
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> volume #7 level 0.1197
> show #!1 models
> hide #!1 models
> open 6w77
6w77 title:
30S-Inactivated-high-Mg2+ Class A [more info...]
Chain information for 6w77 #8
---
Chain | Description | UniProt
A | RNA (1519-MER) |
C | 30S ribosomal protein S3 | RS3_ECOLI 0-232
D | 30S ribosomal protein S4 | RS4_ECOLI 1-206
E | 30S ribosomal protein S5 | RS5_ECOLI 1-167
F | 30S ribosomal protein S6 | RS6_ECOLI 1-135
H | 30S ribosomal protein S8 | RS8_ECOLI 1-130
I | 30S ribosomal protein S9 | RS9_ECOLI 0-129
J | 30S ribosomal protein S10 | RS10_ECOLI 1-103
K | 30S ribosomal protein S11 | RS11_ECOLI 1-129
L | 30S ribosomal protein S12 | RS12_ECOLI 1-124
M | 30S ribosomal protein S13 | RS13_ECOLI 0-117
N | 30S ribosomal protein S14 | RS14_ECOLI 0-100
O | 30S ribosomal protein S15 | RS15_ECOLI 1-89
P | 30S ribosomal protein S16 | RS16_ECOLI 1-82
Q | 30S ribosomal protein S17 | RS17_ECOLI 1-84
R | 30S ribosomal protein S18 | RS18_ECOLI 1-75
S | 30S ribosomal protein S19 | RS19_ECOLI 0-91
T | 30S ribosomal protein S20 | RS20_ECOLI 1-87
> select add #8
47940 atoms, 52058 bonds, 1470 pseudobonds, 3468 residues, 3 models selected
> view matrix models #8,1,0,0,1.4192,0,1,0,6.6625,0,0,1,25.269
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.33291,-0.59861,0.72859,201.72,-0.54738,0.75183,0.36759,78.29,-0.76782,-0.27644,-0.57796,451.18
> view matrix models
> #8,0.3551,-0.6854,-0.63572,317.3,0.25073,-0.58529,0.77108,81.355,-0.90058,-0.4332,-0.035985,410.5
> fitmap #8 inMap #7
Fit molecule 6w77 (#8) to map cryosparc_P79_J106_007_volume_map.mrc z flip
(#7) using 47940 atoms
average map value = 0.1162, steps = 396
shifted from previous position = 35.1
rotated from previous position = 28 degrees
atoms outside contour = 26758, contour level = 0.11969
Position of 6w77 (#8) relative to cryosparc_P79_J106_007_volume_map.mrc z flip
(#7) coordinates:
Matrix rotation and translation
0.14340578 -0.60715293 -0.78153699 383.46595703
0.65415960 -0.53443194 0.53521741 73.09691753
-0.74263716 -0.58800318 0.32053429 341.81069857
Axis -0.66486657 -0.02302593 0.74660716
Axis point 317.00543107 182.76205916 0.00000000
Rotation angle (degrees) 122.36059226
Shift along axis -1.43850599
> select subtract #8
Nothing selected
> preset cartoons/nucleotides ribbons/slabs
Using preset: Cartoons/Nucleotides / Ribbons/Slabs
Changed 47940 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
nucleotides tube/slab shape box
> show #!1 models
> hide #!1 models
> hide #!8 models
> show #!8 models
> open /Users/TEST/Downloads/cryosparc_P79_J117_004_volume_map.mrc
Opened cryosparc_P79_J117_004_volume_map.mrc as #9, grid size 416,416,416,
pixel 0.855, shown at level 0.00629, step 2, values float32
> volume #9 step 1
> volume #9 level 0.04734
> volume #9 level 0.03365
> volume #9 level 0.122
> hide #!8 models
> show #!8 models
> ui mousemode right zoom
> hide #!8 models
> open /Users/TEST/Downloads/cryosparc_P79_J104_006_volume_map.mrc
Opened cryosparc_P79_J104_006_volume_map.mrc as #10, grid size 416,416,416,
pixel 0.855, shown at level 0.089, step 2, values float32
> volume flip#10
Expected a density maps specifier or a keyword
> volume flip #10
Opened cryosparc_P79_J104_006_volume_map.mrc z flip as #11, grid size
416,416,416, pixel 0.855, shown at step 1, values float32
> volume #11 level 0.1051
> show #!8 models
> volume #11 level 0.08636
> volume #11 level 0.0944
> volume #11 level 0.106
> hide #!8 models
> show #!8 models
> volume #11 level 0.1149
> volume #11 level 0.1167
> volume #11 level 0.1185
> volume #11 level 0.09976
> fitmap #8 inMap #11
Fit molecule 6w77 (#8) to map cryosparc_P79_J104_006_volume_map.mrc z flip
(#11) using 47940 atoms
average map value = 0.08563, steps = 84
shifted from previous position = 0.803
rotated from previous position = 0.721 degrees
atoms outside contour = 29756, contour level = 0.099761
Position of 6w77 (#8) relative to cryosparc_P79_J104_006_volume_map.mrc z flip
(#11) coordinates:
Matrix rotation and translation
0.13750542 -0.59914238 -0.78874624 384.36492554
0.65783974 -0.54008134 0.52493710 75.35478948
-0.74049921 -0.59105031 0.31987557 342.83410914
Axis -0.66364839 -0.02869124 0.74749423
Axis point 316.88645977 184.26768295 0.00000000
Rotation angle (degrees) 122.77559930
Shift along axis -0.97866519
> volume #11 level 0.0694
> volume #11 level 0.08726
> hide #!8 models
> hide #!11 models
> show #!11 models
> volume #11 level 0.1105
> volume #7 level 0.1261
> open /Users/TEST/Downloads/cryosparc_P79_J105_007_volume_map.mrc
Opened cryosparc_P79_J105_007_volume_map.mrc as #12, grid size 416,416,416,
pixel 0.855, shown at level 0.0903, step 2, values float32
> volume flip #12
Opened cryosparc_P79_J105_007_volume_map.mrc z flip as #13, grid size
416,416,416, pixel 0.855, shown at step 1, values float32
> volume #13 level 0.05819
> hide #!11 models
> hide #!7 models
> show #!8 models
> volume #13 level 0.06253
> volume #13 level 0.05733
> volume #13 level 0.05472
> volume #13 level 0.05386
> volume #13 level 0.05125
> volume #13 level 0.04778
> volume #13 level 0.04518
> volume #13 level 0.04171
> volume #13 level 0.04084
> volume #13 level 0.03998
> volume #13 level 0.03911
> volume #13 level 0.03737
> volume #13 level 0.03217
> volume #13 level 0.0287
> volume #13 level 0.0261
> volume #13 level 0.02523
> volume #13 level 0.02696
> volume #13 level 0.03217
> volume #13 level 0.03824
> volume #13 level 0.04084
> volume #13 level 0.04345
> volume #13 level 0.04431
> volume #13 level 0.04605
> volume #13 level 0.04692
> volume #13 level 0.05039
> volume #13 level 0.05125
> volume #13 level 0.05472
> volume #13 level 0.08248
> volume #13 level 0.09029
> volume #13 level 0.04518
> volume #13 level 0.0686
> volume #13 level 0.08075
> volume #13 level 0.05993
> open /Users/TEST/Downloads/cryosparc_P79_J107_008_volume_map.mrc
Opened cryosparc_P79_J107_008_volume_map.mrc as #14, grid size 416,416,416,
pixel 0.855, shown at level 0.0621, step 2, values float32
> volume #13 level 0.07901
> select add #14
2 models selected
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #14,0.9839,0.12292,0.12975,-40.903,0.1761,-0.54254,-0.82136,374.32,-0.030568,0.83099,-0.55545,142.46
> ui mousemode right "translate selected models"
> view matrix models
> #14,0.9839,0.12292,0.12975,-39.884,0.1761,-0.54254,-0.82136,388.3,-0.030568,0.83099,-0.55545,164.28
> ui mousemode right "rotate selected models"
> view matrix models
> #14,0.99512,0.0017941,-0.098622,19.136,-0.063611,-0.75247,-0.65554,436.79,-0.075386,0.65862,-0.74869,235.65
> hide #!8 models
> fitmap #14 inMap #13
Fit map cryosparc_P79_J107_008_volume_map.mrc in map
cryosparc_P79_J105_007_volume_map.mrc z flip using 89966 points
correlation = 0.9187, correlation about mean = 0.5335, overlap = 1251
steps = 92, shift = 3.35, angle = 5.44 degrees
Position of cryosparc_P79_J107_008_volume_map.mrc (#14) relative to
cryosparc_P79_J105_007_volume_map.mrc z flip (#13) coordinates:
Matrix rotation and translation
0.99627514 0.07279333 -0.04622697 -3.04199401
0.02112833 -0.72580852 -0.68757221 424.49404288
-0.08360260 0.68403442 -0.72464301 230.90261151
Axis 0.99892106 0.02722012 -0.03762686
Axis point 0.00000000 166.34652057 199.85752346
Rotation angle (degrees) 136.64283986
Shift along axis -0.17207357
> select subtract #14
Nothing selected
> volume #14 step 1
> volume #14 level 0.08652
> volume #14 level 0.1131
> volume #14 level 0.04991
> volume #14 level 0.0488
> volume #14 level 0.05989
> volume #14 level 0.08985
> show #!8 models
> volume #14 level 0.08652
> volume #14 level 0.05434
> volume #14 level 0.1165
> volume #14 level 0.04214
> volume #14 level 0.122
> hide #!8 models
> volume #14 level 0.132
> show #!8 models
> hide #!8 models
> open /Users/TEST/Downloads/cryosparc_P79_J108_006_volume_map.mrc
Opened cryosparc_P79_J108_006_volume_map.mrc as #15, grid size 416,416,416,
pixel 0.855, shown at level 0.0842, step 2, values float32
> select add #15
2 models selected
> view matrix models
> #15,0.96587,0.021589,-0.25813,50.259,-0.11765,-0.85123,-0.51144,386.65,-0.23077,0.52435,-0.81964,297.89
> view matrix models
> #15,0.91495,-0.33348,-0.22727,105.68,-0.40307,-0.72737,-0.5554,426.56,0.019908,0.59977,-0.79992,239.24
> ui mousemode right "translate selected models"
> view matrix models
> #15,0.91495,-0.33348,-0.22727,106.51,-0.40307,-0.72737,-0.5554,471.13,0.019908,0.59977,-0.79992,236.67
> fitmap #15 inMap #14
Fit map cryosparc_P79_J108_006_volume_map.mrc in map
cryosparc_P79_J107_008_volume_map.mrc using 89917 points
correlation = 0.8803, correlation about mean = 0.6389, overlap = 1275
steps = 292, shift = 7.73, angle = 26.3 degrees
Position of cryosparc_P79_J108_006_volume_map.mrc (#15) relative to
cryosparc_P79_J107_008_volume_map.mrc (#14) coordinates:
Matrix rotation and translation
0.99998794 -0.00458121 -0.00178060 1.04250895
0.00457292 0.99997885 -0.00462839 0.63789362
0.00180177 0.00462020 0.99998773 -1.32219666
Axis 0.68523467 -0.26542075 0.67823688
Axis point 0.00000000 234.85765351 116.57858360
Rotation angle (degrees) 0.38666238
Shift along axis -0.35170946
> select subtract #15
Nothing selected
> volume #15 level 0.05821
> volume #15 level 0.05908
> volume #15 step 1
> volume #15 level 0.08303
> volume #15 level 0.09545
> volume #15 level 0.07593
> open /Users/TEST/Downloads/cryosparc_P79_J109_008_volume_map.mrc
Opened cryosparc_P79_J109_008_volume_map.mrc as #16, grid size 416,416,416,
pixel 0.855, shown at level 0.0591, step 2, values float32
> hide #!14 models
> hide #!15 models
> show #!15 models
> select add #16
2 models selected
> view matrix models #16,1,0,0,78.715,0,1,0,-68.37,0,0,1,6.288
> ui mousemode right "rotate selected models"
> view matrix models
> #16,0.98758,-0.10989,0.11225,79.186,-0.018622,-0.79142,-0.61099,348.44,0.15598,0.60131,-0.78364,199.74
> view matrix models
> #16,0.96928,0.076201,0.23385,29.019,0.18617,-0.84865,-0.49511,299.97,0.16073,0.52344,-0.83677,221.67
> ui mousemode right "translate selected models"
> view matrix models
> #16,0.96928,0.076201,0.23385,-61.453,0.18617,-0.84865,-0.49511,377.98,0.16073,0.52344,-0.83677,239.76
> fitmap #16 inMap #15
Fit map cryosparc_P79_J109_008_volume_map.mrc in map
cryosparc_P79_J108_006_volume_map.mrc using 89946 points
correlation = 0.9271, correlation about mean = 0.6158, overlap = 1126
steps = 260, shift = 15.7, angle = 20.7 degrees
Position of cryosparc_P79_J109_008_volume_map.mrc (#16) relative to
cryosparc_P79_J108_006_volume_map.mrc (#15) coordinates:
Matrix rotation and translation
0.99999475 0.00241106 -0.00216162 -0.17636621
-0.00240772 0.99999589 0.00154862 -0.35403078
0.00216535 -0.00154341 0.99999646 -0.11870404
Axis -0.43084758 -0.60292539 -0.67145464
Axis point -54.61299054 7.06512662 0.00000000
Rotation angle (degrees) 0.20559551
Shift along axis 0.36914548
> select subtract #16
Nothing selected
> volume #16 step 1
> volume #16 level 0.08424
> volume #16 level 0.05732
> volume #16 level 0.09412
> volume #16 level 0.1372
> volume #16 level 0.08873
> volume #16 level 0.08963
> volume #16 level 0.09322
> volume #16 level 0.1004
> volume #16 level 0.1013
> volume #16 level 0.1022
> volume #16 level 0.1013
> volume #16 level 0.09053
> volume #16 level 0.08065
> volume #16 level 0.07706
> volume #16 level 0.07347
> volume #16 level 0.06719
> volume #16 level 0.0645
> volume #16 level 0.05912
> volume #16 level 0.05283
> volume #16 level 0.05014
> volume #16 level 0.04924
> volume #16 level 0.04476
> volume #16 level 0.04206
> volume #16 level 0.04117
> volume #16 level 0.03489
> volume #16 level 0.03399
> volume #16 level 0.0304
> volume #16 level 0.0286
> volume #16 level 0.01514
> volume #16 level 0.01245
> volume #16 level 0.04476
> volume #16 level 0.04565
> volume #16 level 0.04655
> volume #16 level 0.04745
> volume #16 level 0.05553
> volume #16 level 0.05732
> volume #16 level 0.05822
> volume #16 level 0.06271
> show #!15 models
> volume #16 level 0.08065
> volume #16 level 0.09681
> volume #16 level 0.07796
> volume #16 level 0.06809
> volume #16 step 2
> volume #16 step 1
> volume #16 level 0.0986
> show #!8 models
> fitmap #8 inMap #16
Fit molecule 6w77 (#8) to map cryosparc_P79_J109_008_volume_map.mrc (#16)
using 47940 atoms
average map value = 0.05853, steps = 92
shifted from previous position = 2.26
rotated from previous position = 1.89 degrees
atoms outside contour = 35154, contour level = 0.098603
Position of 6w77 (#8) relative to cryosparc_P79_J109_008_volume_map.mrc (#16)
coordinates:
Matrix rotation and translation
0.23472305 -0.57037107 -0.78713525 364.95017907
-0.96874027 -0.07036786 -0.23788781 363.03339958
0.08029529 0.81836736 -0.56905840 146.65551544
Axis 0.74192919 -0.60929600 -0.27982040
Axis point 0.00000000 289.37114109 245.91547306
Rotation angle (degrees) 134.61598044
Shift along axis 8.53518964
> volume #16 level 0.09681
> volume #16 level 0.04745
> volume #16 level 0.09053
> volume #16 level 0.07976
> show #!15 models
> hide #!15 models
> show #!15 models
> volume #15 level 0.08746
> hide #!15 models
> ui mousemode right zoom
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> volume #16 level 0.07886
> volume #16 level 0.09681
> volume #15 level 0.1114
> volume #15 level 0.1034
> volume #15 level 0.07593
> volume #15 level 0.05198
> volume #13 level 0.04605
> volume #13 level 0.09463
> volume #15 level 0.09811
> hide #!15 models
> open /Users/TEST/Downloads/cryosparc_P79_J110_006_volume_map.mrc
Opened cryosparc_P79_J110_006_volume_map.mrc as #17, grid size 416,416,416,
pixel 0.855, shown at level 0.0715, step 2, values float32
> volume flip #17
Opened cryosparc_P79_J110_006_volume_map.mrc z flip as #18, grid size
416,416,416, pixel 0.855, shown at step 1, values float32
> select add #18
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #18,-0.029148,-0.88593,0.46291,236.9,0.99951,-0.031148,0.0033254,-26.337,0.011473,0.46278,0.8864,-51.423
> select subtract #18
Nothing selected
> close #18
> select add #17
2 models selected
> show #!17 models
> view matrix models
> #17,0.91417,0.39615,0.085749,-59.403,0.39446,-0.82087,-0.41302,276.52,-0.093228,0.41139,-0.90668,306.13
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.91417,0.39615,0.085749,-83.881,0.39446,-0.82087,-0.41302,317.56,-0.093228,0.41139,-0.90668,311.77
> hide #!8 models
> fitmap #17 inMap #13
Fit map cryosparc_P79_J110_006_volume_map.mrc in map
cryosparc_P79_J105_007_volume_map.mrc z flip using 89972 points
correlation = 0.9459, correlation about mean = 0.6448, overlap = 1136
steps = 352, shift = 16.5, angle = 28 degrees
Position of cryosparc_P79_J110_006_volume_map.mrc (#17) relative to
cryosparc_P79_J105_007_volume_map.mrc z flip (#13) coordinates:
Matrix rotation and translation
0.99612616 0.06811242 -0.05561803 -1.19716376
0.01173507 -0.72979548 -0.68356480 425.68887782
-0.08714904 0.68026410 -0.72776768 233.30131460
Axis 0.99888023 0.02309359 -0.04129126
Axis point 0.00000000 166.80218869 200.68069983
Rotation angle (degrees) 136.94666269
Shift along axis -0.99844603
> select subtract #17
Nothing selected
> hide #!13 models
> volume #17 step 1
> volume #17 level 0.1034
> volume #17 level 0.05838
> volume #17 level 0.08619
> show #!8 models
> open /Users/TEST/Downloads/cryosparc_P79_J83_009_volume_map.mrc
Opened cryosparc_P79_J83_009_volume_map.mrc as #18, grid size 416,416,416,
pixel 0.855, shown at level 0.0758, step 2, values float32
> volume flip#18
Expected a density maps specifier or a keyword
> volume flip #18
Opened cryosparc_P79_J83_009_volume_map.mrc z flip as #19, grid size
416,416,416, pixel 0.855, shown at step 1, values float32
> volume #19 level 0.1457
> volume #19 level 0.08333
> volume #19 level 0.1133
> volume #19 level 0.06587
> volume #19 level 0.1033
> fitmap #8 inMap #19
Fit molecule 6w77 (#8) to map cryosparc_P79_J83_009_volume_map.mrc z flip
(#19) using 47940 atoms
average map value = 0.08252, steps = 116
shifted from previous position = 0.553
rotated from previous position = 2.51 degrees
atoms outside contour = 33742, contour level = 0.10328
Position of 6w77 (#8) relative to cryosparc_P79_J83_009_volume_map.mrc z flip
(#19) coordinates:
Matrix rotation and translation
0.14646999 -0.61011829 -0.77865408 382.93658222
0.62609573 -0.55224169 0.55048451 76.80457426
-0.76586593 -0.56814144 0.30110564 345.04533905
Axis -0.67094194 -0.00767022 0.74147022
Axis point 319.77230657 178.45145803 0.00000000
Rotation angle (degrees) 123.52721750
Shift along axis -1.67647618
> fitmap #8 inMap #19
Fit molecule 6w77 (#8) to map cryosparc_P79_J83_009_volume_map.mrc z flip
(#19) using 47940 atoms
average map value = 0.08252, steps = 60
shifted from previous position = 0.00721
rotated from previous position = 0.00777 degrees
atoms outside contour = 33745, contour level = 0.10328
Position of 6w77 (#8) relative to cryosparc_P79_J83_009_volume_map.mrc z flip
(#19) coordinates:
Matrix rotation and translation
0.14646590 -0.61001585 -0.77873510 382.94056266
0.62608321 -0.55232553 0.55041463 76.83352954
-0.76587695 -0.56816994 0.30102384 345.06330598
Axis -0.67096237 -0.00771273 0.74145128
Axis point 319.78341604 178.46229280 0.00000000
Rotation angle (degrees) 123.53305026
Shift along axis -1.68367415
> volume #19 level 0.06212
> volume #19 level 0.1033
> volume #19 level 0.09455
> open /Users/TEST/Downloads/cryosparc_P79_J120_007_volume_map.mrc
Opened cryosparc_P79_J120_007_volume_map.mrc as #20, grid size 416,416,416,
pixel 0.855, shown at level 0.0841, step 2, values float32
> select add #20
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #20,0.94748,0.23038,0.22184,-65.904,0.31751,-0.59421,-0.73899,317.14,-0.038432,0.77061,-0.63614,194.52
> volume #20 step 1
> view matrix models
> #20,0.97623,-0.1267,-0.17584,54.84,-0.20847,-0.77075,-0.60207,409.49,-0.059248,0.62442,-0.77884,245.92
> ui mousemode right "translate selected models"
> view matrix models
> #20,0.97623,-0.1267,-0.17584,40.74,-0.20847,-0.77075,-0.60207,449.45,-0.059248,0.62442,-0.77884,249.45
> select subtract #20
Nothing selected
> hide #!8 models
> select add #20
2 models selected
> fitmap #20 inMap #19
Fit map cryosparc_P79_J120_007_volume_map.mrc in map
cryosparc_P79_J83_009_volume_map.mrc z flip using 719835 points
correlation = 0.9269, correlation about mean = 0.6279, overlap = 1.086e+04
steps = 212, shift = 17.8, angle = 14.2 degrees
Position of cryosparc_P79_J120_007_volume_map.mrc (#20) relative to
cryosparc_P79_J83_009_volume_map.mrc z flip (#19) coordinates:
Matrix rotation and translation
0.99487121 0.06899358 -0.07396735 2.82681791
-0.00418084 -0.70259206 -0.71158058 429.16101192
-0.10106336 0.70824028 -0.69870016 226.02248115
Axis 0.99849324 0.01905535 -0.05146012
Axis point 0.00000000 167.31414667 202.79543638
Rotation angle (degrees) 134.68515391
Shift along axis -0.63077131
> select subtract #20
Nothing selected
> hide #!19 models
> volume #20 level 0.1045
> volume #20 color #ff2600
> volume #20 color #ff9300
> volume #13 level 0.09116
> hide #!13 models
> volume #15 level 0.1194
> volume #15 level 0.107
> volume #20 level 0.1045
> show #!8 models
> fitmap #8 inMap #20
Fit molecule 6w77 (#8) to map cryosparc_P79_J120_007_volume_map.mrc (#20)
using 47940 atoms
average map value = 0.09719, steps = 56
shifted from previous position = 0.473
rotated from previous position = 1.13 degrees
atoms outside contour = 28769, contour level = 0.10448
Position of 6w77 (#8) relative to cryosparc_P79_J120_007_volume_map.mrc (#20)
coordinates:
Matrix rotation and translation
0.22413869 -0.56263172 -0.79574326 367.27391727
-0.97105036 -0.05972796 -0.23128705 359.19423253
0.08260131 0.82454717 -0.55973111 142.74226126
Axis 0.73687310 -0.61300200 -0.28503784
Axis point 0.00000000 290.69288526 246.97486691
Rotation angle (degrees) 134.23958198
Shift along axis 9.76054044
> volume #20 level 0.05357
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: MKGP3LL/A
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 8422.121.1
OS Loader Version: 8422.121.1
Software:
System Software Overview:
System Version: macOS 13.4.1 (c) (22F770820d)
Kernel Version: Darwin 22.5.0
Time since boot: 3 days, 3 hours, 32 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Sidecar Display:
Resolution: 2732 x 2048
UI Looks like: 1366 x 1024 @ 60.00Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Mirror: Off
Connection Type: AirPlay
Virtual Device: Yes
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (5)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Status: | accepted → feedback |
|---|
comment:3 by , 2 years ago
Indeed. Then no worries. Thanks! On Wed, Jul 19, 2023 at 12:25 PM ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote: > > > > > >
comment:4 by , 2 years ago
The case where we know this crash happens is if you have ChimeraX full-screen on an external monitor with laptop screen closed, then unplug the external monitor and later open the laptop screen. If you don't have ChimeraX full-screen when you unplug the external monitor we have not seen it crash. Maybe this will help you avoid the crash until we fix it. This is a but in the Qt window toolkit and we hope to fix this crash by updating to a newer Qt version.
comment:5 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | feedback → closed |
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Hi Songzhe,
--Eric