Opened 2 years ago
Closed 2 years ago
#9339 closed defect (nonchimerax)
Cannot allocate memory to encode movie
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-6.2.0-10011-tuxedo-x86_64-with-glibc2.35
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3jc8 format mmcif fromDatabase pdb
3jc8 title:
Architectural model of the type IVa pilus machine in a piliated state [more
info...]
Chain information for 3jc8 #1
---
Chain | Description | UniProt
A1 A2 A3 A4 A5 A6 A7 A8 A9 Aa Ab Ac Ad Ae Af Ag Ah Ai Aj Ak Al Am An Ao Ap Aq
Ar As At Au Av Aw Ax Ay Az | PilA |
Ba Bb Bc Bd Be Bf | Type IV-A pilus assembly ATPase PilB | Q1D098_MYXXD 1-566
Ca Cb | Type 4 fimbrial assembly protein PilC | Q1D0A0_MYXXD 1-417
Ma Mb Mc Md Me Mf Mg Mh Mi Mj Mk Ml | Type IV pilus biogenesis protein PilM |
Q1D0B0_MYXXD 1-395
Na Nb Nc Nd Ne Nf Ng Nh Ni Nj Nk Nl | PilN | Q306N5_MYXXD 1-225
Oa Ob Oc Od Oe Of Og Oh Oi Oj Ok Ol | PilO | Q306N4_MYXXD 1-205
Pa Pb Pc Pd Pe Pf Pg Ph Pi Pj Pk Pl | PilP | Q306N3_MYXXD 1-172
Qa Qb Qc Qd Qe Qf Qg Qh Qi Qj Qk Ql | PilQ | Q9ZFG1_MYXXD 1-901
Ta Tb Tc Td Te Tf Tg Th Ti Tj Tk Tl | LysM domain protein | Q1D813_MYXXD 1-411
> movie encode /home/hunter/Videos/mymovie.mp4
No frames have been recorded
> view orient
> view name p1
> view name p2
> view name p3
> view name p4
> view name p5
> view name p6
> view name p7
> view name p8
> view orient
> view name p9
> fly p1 p2 p3 p4 p5 p6 p7 p8 p9
> movie record
> split
Split 3jc8 (#1) into 115 models
Chain information for 3jc8 A1 #1.1
---
Chain | Description
A1 | No description available
Chain information for 3jc8 A2 #1.2
---
Chain | Description
A2 | No description available
Chain information for 3jc8 A3 #1.3
---
Chain | Description
A3 | No description available
Chain information for 3jc8 A4 #1.4
---
Chain | Description
A4 | No description available
Chain information for 3jc8 A5 #1.5
---
Chain | Description
A5 | No description available
Chain information for 3jc8 A6 #1.6
---
Chain | Description
A6 | No description available
Chain information for 3jc8 A7 #1.7
---
Chain | Description
A7 | No description available
Chain information for 3jc8 A8 #1.8
---
Chain | Description
A8 | No description available
Chain information for 3jc8 A9 #1.9
---
Chain | Description
A9 | No description available
Chain information for 3jc8 Aa #1.10
---
Chain | Description
Aa | No description available
Chain information for 3jc8 Ab #1.11
---
Chain | Description
Ab | No description available
Chain information for 3jc8 Ac #1.12
---
Chain | Description
Ac | No description available
Chain information for 3jc8 Ad #1.13
---
Chain | Description
Ad | No description available
Chain information for 3jc8 Ae #1.14
---
Chain | Description
Ae | No description available
Chain information for 3jc8 Af #1.15
---
Chain | Description
Af | No description available
Chain information for 3jc8 Ag #1.16
---
Chain | Description
Ag | No description available
Chain information for 3jc8 Ah #1.17
---
Chain | Description
Ah | No description available
Chain information for 3jc8 Ai #1.18
---
Chain | Description
Ai | No description available
Chain information for 3jc8 Aj #1.19
---
Chain | Description
Aj | No description available
Chain information for 3jc8 Ak #1.20
---
Chain | Description
Ak | No description available
Chain information for 3jc8 Al #1.21
---
Chain | Description
Al | No description available
Chain information for 3jc8 Am #1.22
---
Chain | Description
Am | No description available
Chain information for 3jc8 An #1.23
---
Chain | Description
An | No description available
Chain information for 3jc8 Ao #1.24
---
Chain | Description
Ao | No description available
Chain information for 3jc8 Ap #1.25
---
Chain | Description
Ap | No description available
Chain information for 3jc8 Aq #1.26
---
Chain | Description
Aq | No description available
Chain information for 3jc8 Ar #1.27
---
Chain | Description
Ar | No description available
Chain information for 3jc8 As #1.28
---
Chain | Description
As | No description available
Chain information for 3jc8 At #1.29
---
Chain | Description
At | No description available
Chain information for 3jc8 Au #1.30
---
Chain | Description
Au | No description available
Chain information for 3jc8 Av #1.31
---
Chain | Description
Av | No description available
Chain information for 3jc8 Aw #1.32
---
Chain | Description
Aw | No description available
Chain information for 3jc8 Ax #1.33
---
Chain | Description
Ax | No description available
Chain information for 3jc8 Ay #1.34
---
Chain | Description
Ay | No description available
Chain information for 3jc8 Az #1.35
---
Chain | Description
Az | No description available
Chain information for 3jc8 Ba #1.36
---
Chain | Description
Ba | No description available
Chain information for 3jc8 Bb #1.37
---
Chain | Description
Bb | No description available
Chain information for 3jc8 Bc #1.38
---
Chain | Description
Bc | No description available
Chain information for 3jc8 Bd #1.39
---
Chain | Description
Bd | No description available
Chain information for 3jc8 Be #1.40
---
Chain | Description
Be | No description available
Chain information for 3jc8 Bf #1.41
---
Chain | Description
Bf | No description available
Chain information for 3jc8 Ca #1.42
---
Chain | Description
Ca | No description available
Chain information for 3jc8 Cb #1.43
---
Chain | Description
Cb | No description available
Chain information for 3jc8 Ma #1.44
---
Chain | Description
Ma | No description available
Chain information for 3jc8 Mb #1.45
---
Chain | Description
Mb | No description available
Chain information for 3jc8 Mc #1.46
---
Chain | Description
Mc | No description available
Chain information for 3jc8 Md #1.47
---
Chain | Description
Md | No description available
Chain information for 3jc8 Me #1.48
---
Chain | Description
Me | No description available
Chain information for 3jc8 Mf #1.49
---
Chain | Description
Mf | No description available
Chain information for 3jc8 Mg #1.50
---
Chain | Description
Mg | No description available
Chain information for 3jc8 Mh #1.51
---
Chain | Description
Mh | No description available
Chain information for 3jc8 Mi #1.52
---
Chain | Description
Mi | No description available
Chain information for 3jc8 Mj #1.53
---
Chain | Description
Mj | No description available
Chain information for 3jc8 Mk #1.54
---
Chain | Description
Mk | No description available
Chain information for 3jc8 Ml #1.55
---
Chain | Description
Ml | No description available
Chain information for 3jc8 Na #1.56
---
Chain | Description
Na | No description available
Chain information for 3jc8 Nb #1.57
---
Chain | Description
Nb | No description available
Chain information for 3jc8 Nc #1.58
---
Chain | Description
Nc | No description available
Chain information for 3jc8 Nd #1.59
---
Chain | Description
Nd | No description available
Chain information for 3jc8 Ne #1.60
---
Chain | Description
Ne | No description available
Chain information for 3jc8 Nf #1.61
---
Chain | Description
Nf | No description available
Chain information for 3jc8 Ng #1.62
---
Chain | Description
Ng | No description available
Chain information for 3jc8 Nh #1.63
---
Chain | Description
Nh | No description available
Chain information for 3jc8 Ni #1.64
---
Chain | Description
Ni | No description available
Chain information for 3jc8 Nj #1.65
---
Chain | Description
Nj | No description available
Chain information for 3jc8 Nk #1.66
---
Chain | Description
Nk | No description available
Chain information for 3jc8 Nl #1.67
---
Chain | Description
Nl | No description available
Chain information for 3jc8 Oa #1.68
---
Chain | Description
Oa | No description available
Chain information for 3jc8 Ob #1.69
---
Chain | Description
Ob | No description available
Chain information for 3jc8 Oc #1.70
---
Chain | Description
Oc | No description available
Chain information for 3jc8 Od #1.71
---
Chain | Description
Od | No description available
Chain information for 3jc8 Oe #1.72
---
Chain | Description
Oe | No description available
Chain information for 3jc8 Of #1.73
---
Chain | Description
Of | No description available
Chain information for 3jc8 Og #1.74
---
Chain | Description
Og | No description available
Chain information for 3jc8 Oh #1.75
---
Chain | Description
Oh | No description available
Chain information for 3jc8 Oi #1.76
---
Chain | Description
Oi | No description available
Chain information for 3jc8 Oj #1.77
---
Chain | Description
Oj | No description available
Chain information for 3jc8 Ok #1.78
---
Chain | Description
Ok | No description available
Chain information for 3jc8 Ol #1.79
---
Chain | Description
Ol | No description available
Chain information for 3jc8 Pa #1.80
---
Chain | Description
Pa | No description available
Chain information for 3jc8 Pb #1.81
---
Chain | Description
Pb | No description available
Chain information for 3jc8 Pc #1.82
---
Chain | Description
Pc | No description available
Chain information for 3jc8 Pd #1.83
---
Chain | Description
Pd | No description available
Chain information for 3jc8 Pe #1.84
---
Chain | Description
Pe | No description available
Chain information for 3jc8 Pf #1.85
---
Chain | Description
Pf | No description available
Chain information for 3jc8 Pg #1.86
---
Chain | Description
Pg | No description available
Chain information for 3jc8 Ph #1.87
---
Chain | Description
Ph | No description available
Chain information for 3jc8 Pi #1.88
---
Chain | Description
Pi | No description available
Chain information for 3jc8 Pj #1.89
---
Chain | Description
Pj | No description available
Chain information for 3jc8 Pk #1.90
---
Chain | Description
Pk | No description available
Chain information for 3jc8 Pl #1.91
---
Chain | Description
Pl | No description available
Chain information for 3jc8 Qa #1.92
---
Chain | Description
Qa | No description available
Chain information for 3jc8 Qb #1.93
---
Chain | Description
Qb | No description available
Chain information for 3jc8 Qc #1.94
---
Chain | Description
Qc | No description available
Chain information for 3jc8 Qd #1.95
---
Chain | Description
Qd | No description available
Chain information for 3jc8 Qe #1.96
---
Chain | Description
Qe | No description available
Chain information for 3jc8 Qf #1.97
---
Chain | Description
Qf | No description available
Chain information for 3jc8 Qg #1.98
---
Chain | Description
Qg | No description available
Chain information for 3jc8 Qh #1.99
---
Chain | Description
Qh | No description available
Chain information for 3jc8 Qi #1.100
---
Chain | Description
Qi | No description available
Chain information for 3jc8 Qj #1.101
---
Chain | Description
Qj | No description available
Chain information for 3jc8 Qk #1.102
---
Chain | Description
Qk | No description available
Chain information for 3jc8 Ql #1.103
---
Chain | Description
Ql | No description available
Chain information for 3jc8 Ta #1.104
---
Chain | Description
Ta | No description available
Chain information for 3jc8 Tb #1.105
---
Chain | Description
Tb | No description available
Chain information for 3jc8 Tc #1.106
---
Chain | Description
Tc | No description available
Chain information for 3jc8 Td #1.107
---
Chain | Description
Td | No description available
Chain information for 3jc8 Te #1.108
---
Chain | Description
Te | No description available
Chain information for 3jc8 Tf #1.109
---
Chain | Description
Tf | No description available
Chain information for 3jc8 Tg #1.110
---
Chain | Description
Tg | No description available
Chain information for 3jc8 Th #1.111
---
Chain | Description
Th | No description available
Chain information for 3jc8 Ti #1.112
---
Chain | Description
Ti | No description available
Chain information for 3jc8 Tj #1.113
---
Chain | Description
Tj | No description available
Chain information for 3jc8 Tk #1.114
---
Chain | Description
Tk | No description available
Chain information for 3jc8 Tl #1.115
---
Chain | Description
Tl | No description available
> fly p1 p2
> crossfade: hide ~/Ba-Cd
Unknown command: crossfade: hide ~/Ba-Cd
> crossfade: hide ~/Ba-Cb
Unknown command: crossfade: hide ~/Ba-Cb
> crossfade
> hide ~/Ba-Cb
> ui mousemode right "mark center"
> roll 2 180
Expected an axis vector or a keyword
> roll x 2 180
> roll y 2 180
> crossfade
> show ~/Ba-Cb
> fly p2 p3
> fly p3 p4
> fly p4 p5
> fly p5 p6
> fly p6 p7
> fly p7 p8
> roll y 2 180
> roll x 2 180
> roll z 2 180
> fly p8 p9
> movie encode /home/hunter/Videos/movie.mp4
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute
cmd.run(cmd_text)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/movie/moviecmd.py", line 185, in movie_encode
encode_op(session, output[-1], format, quality, qscale, bitrate,
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/movie/moviecmd.py", line 243, in encode_op
movie.start_encoding(output, f['ffmpeg_name'], output_size, f['ffmpeg_codec'],
"yuv420p", f['size_restriction'],
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/movie/movie.py", line 320, in start_encoding
self.encoder.run(Status_Reporter())
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/movie/encode.py", line 231, in run
p = Popen(self.arg_list, stdin=DEVNULL, stdout=PIPE, stderr=PIPE)
File "/usr/lib/ucsf-chimerax/lib/python3.9/subprocess.py", line 951, in
__init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "/usr/lib/ucsf-chimerax/lib/python3.9/subprocess.py", line 1754, in
_execute_child
self.pid = _posixsubprocess.fork_exec(
OSError: [Errno 12] Cannot allocate memory
OSError: [Errno 12] Cannot allocate memory
File "/usr/lib/ucsf-chimerax/lib/python3.9/subprocess.py", line 1754, in
_execute_child
self.pid = _posixsubprocess.fork_exec(
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 535.54.03
OpenGL renderer: NVIDIA GeForce RTX 3050 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_GB.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=plasma
XDG_SESSION_DESKTOP=KDE
XDG_CURRENT_DESKTOP=KDE
DISPLAY=:0
Manufacturer: ASUSTeK COMPUTER INC.
Model: Vivobook_ASUSLaptop K6502HC_K6502HC
OS: TUXEDO OS 22.04 jammy
Architecture: 64bit
Virtual Machine: detection failed
CPU: 16 11th Gen Intel(R) Core(TM) i9-11900H @ 2.50GHz
Cache Size: 24576 KB
Memory:
MemTotal: 16050716 kB
MemFree: 4044996 kB
MemAvailable: 6888748 kB
Graphics:
unknown
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Cannot allocate memory to encode movie |
comment:2 by , 2 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
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Linux gave a memory allocation error trying to fork ffmpeg to encode a movie. It does not look like ChimeraX was taking much memory. The system has 16 GB and supposedly had 4 GB free.